AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0673460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0673460 MtrunA17_Chr4g0014101 100.000 109 0 0 1 109 239 347 5.37e-71 215
Msa0673460 MtrunA17_Chr4g0014141 60.550 109 43 0 1 109 232 340 6.10e-34 119
Msa0673460 MtrunA17_Chr4g0014161 59.406 101 41 0 1 101 234 334 3.20e-29 107
Msa0673460 MtrunA17_Chr4g0014111 75.556 45 9 1 1 43 241 285 1.84e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0673460 AT1G33970.1 51.042 96 47 0 1 96 233 328 1.07e-24 95.9
Msa0673460 AT1G33970.2 51.042 96 47 0 1 96 233 328 1.07e-24 95.9
Msa0673460 AT1G33970.4 51.042 96 47 0 1 96 233 328 1.07e-24 95.9
Msa0673460 AT1G33970.5 51.042 96 47 0 1 96 233 328 1.07e-24 95.9

Find 21 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGCAAGCGAGGTGATAA+GGG 0.358423 4_4:+19781516 Msa0673460:CDS
ACAAAGAAAGGTTGATTCCT+TGG 0.386870 4_4:+19779696 Msa0673460:CDS
GTAGATTGAGTCAAAGTTGA+AGG 0.398135 4_4:+19781350 Msa0673460:intron
ACTCCGCAAGCGAGGTGATA+AGG 0.415841 4_4:+19781515 Msa0673460:CDS
AGCAGAAGACAGTGCAAAGT+TGG 0.445685 4_4:+19781428 Msa0673460:CDS
GCATATGCAGCAAACATATG+AGG 0.468304 4_4:+19779756 Msa0673460:CDS
TACAAGGCTTGAGAAACAAT+TGG 0.506471 4_4:+19781380 Msa0673460:CDS
AGAAAGGTTGATTCCTTGGA+AGG 0.509028 4_4:+19779700 Msa0673460:CDS
TCCTTCTGAATATCCTTCCA+AGG 0.521923 4_4:-19779713 None:intergenic
GCTAAAACATATTACTGAGA+TGG 0.577150 4_4:+19779783 Msa0673460:CDS
CTTGCTACTAGATCATAGAA+TGG 0.577281 4_4:-19781547 None:intergenic
ACGATGAAATACGAAAACTA+AGG 0.582337 4_4:+19781466 Msa0673460:CDS
CATGAAGAACTCCGCAAGCG+AGG 0.587165 4_4:+19781507 Msa0673460:CDS
ACTGCATAGAGAACAAAGAA+AGG 0.590070 4_4:+19779684 Msa0673460:CDS
TCCTTGGAAGGATATTCAGA+AGG 0.590769 4_4:+19779712 Msa0673460:CDS
AGTTGAAGGAGGCAACTACA+AGG 0.610652 4_4:+19781364 Msa0673460:CDS
TCCGCAAGCGAGGTGATAAG+GGG 0.625525 4_4:+19781517 Msa0673460:CDS
ACTAAGGAAGCATCTTGAGA+AGG 0.630580 4_4:+19781482 Msa0673460:CDS
GATTGAGTCAAAGTTGAAGG+AGG 0.654673 4_4:+19781353 Msa0673460:intron
CCGCAAGCGAGGTGATAAGG+GGG 0.671834 4_4:+19781518 Msa0673460:CDS
CGCAAGCGAGGTGATAAGGG+GGG 0.685418 4_4:+19781519 Msa0673460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGACATTTTATTTTATTTTT+TGG + chr4_4:19779882-19779901 Msa0673460:intron 10.0%
!!! ATTTAGATTTTATCAAAAAT+TGG + chr4_4:19780947-19780966 Msa0673460:intron 10.0%
!!! TGACATTTTATTTTATTTTT+TGG + chr4_4:19779882-19779901 Msa0673460:intron 10.0%
!!! ATTTAGATTTTATCAAAAAT+TGG + chr4_4:19780947-19780966 Msa0673460:intron 10.0%
!! TTTAATAAGGAAAACAATTA+TGG + chr4_4:19780281-19780300 Msa0673460:intron 15.0%
!!! ATTCAATTTTTACATTATCT+AGG - chr4_4:19780578-19780597 None:intergenic 15.0%
!! TTTAATAAGGAAAACAATTA+TGG + chr4_4:19780281-19780300 Msa0673460:intron 15.0%
!!! ATTCAATTTTTACATTATCT+AGG - chr4_4:19780578-19780597 None:intergenic 15.0%
!! TCAAAAAATATAGACAGAAA+AGG - chr4_4:19779811-19779830 None:intergenic 20.0%
!! CTAACTTAATAAGAAAGTTT+AGG + chr4_4:19779950-19779969 Msa0673460:intron 20.0%
!! CTAACTTAATAAGAAAGTTT+AGG + chr4_4:19779950-19779969 Msa0673460:intron 20.0%
!! AGTATCAGAAATTAAGTAAT+GGG + chr4_4:19780131-19780150 Msa0673460:intron 20.0%
!!! TATATTCTTTTTGCATTTCA+TGG + chr4_4:19780158-19780177 Msa0673460:intron 20.0%
!!! ATATTCTTTTTGCATTTCAT+GGG + chr4_4:19780159-19780178 Msa0673460:intron 20.0%
!!! AACATTAAATAGCCATTTTT+TGG + chr4_4:19780215-19780234 Msa0673460:intron 20.0%
!!! TTGTTTTCCTTATTAAAAGT+TGG - chr4_4:19780278-19780297 None:intergenic 20.0%
!! ATAAATTATCAAACCAAGTT+TGG + chr4_4:19780474-19780493 Msa0673460:intron 20.0%
!!! AATTTTTACATTATCTAGGA+AGG - chr4_4:19780574-19780593 None:intergenic 20.0%
!! AAATATTGAAATGTGCATTA+GGG + chr4_4:19780655-19780674 Msa0673460:intron 20.0%
!!! TAGATTTTATCAAAAATTGG+AGG + chr4_4:19780950-19780969 Msa0673460:intron 20.0%
!! TTTGTGTTTGATCAATTATA+TGG + chr4_4:19781323-19781342 Msa0673460:intron 20.0%
!! TCAAAAAATATAGACAGAAA+AGG - chr4_4:19779811-19779830 None:intergenic 20.0%
!! CTAACTTAATAAGAAAGTTT+AGG + chr4_4:19779950-19779969 Msa0673460:intron 20.0%
!! CTAACTTAATAAGAAAGTTT+AGG + chr4_4:19779950-19779969 Msa0673460:intron 20.0%
!! AGTATCAGAAATTAAGTAAT+GGG + chr4_4:19780131-19780150 Msa0673460:intron 20.0%
!!! TATATTCTTTTTGCATTTCA+TGG + chr4_4:19780158-19780177 Msa0673460:intron 20.0%
!!! ATATTCTTTTTGCATTTCAT+GGG + chr4_4:19780159-19780178 Msa0673460:intron 20.0%
!!! AACATTAAATAGCCATTTTT+TGG + chr4_4:19780215-19780234 Msa0673460:intron 20.0%
!!! TTGTTTTCCTTATTAAAAGT+TGG - chr4_4:19780278-19780297 None:intergenic 20.0%
!! ATAAATTATCAAACCAAGTT+TGG + chr4_4:19780474-19780493 Msa0673460:intron 20.0%
!!! AATTTTTACATTATCTAGGA+AGG - chr4_4:19780574-19780593 None:intergenic 20.0%
!! AAATATTGAAATGTGCATTA+GGG + chr4_4:19780655-19780674 Msa0673460:intron 20.0%
!!! TAGATTTTATCAAAAATTGG+AGG + chr4_4:19780950-19780969 Msa0673460:intron 20.0%
!! TTTGTGTTTGATCAATTATA+TGG + chr4_4:19781323-19781342 Msa0673460:intron 20.0%
! CAGTATCAGAAATTAAGTAA+TGG + chr4_4:19780130-19780149 Msa0673460:intron 25.0%
!! ATGTTTGTTACAAATTCACA+AGG - chr4_4:19780200-19780219 None:intergenic 25.0%
! AATAAGGAAAACAATTATGG+AGG + chr4_4:19780284-19780303 Msa0673460:intron 25.0%
! ATAAGGAAAACAATTATGGA+GGG + chr4_4:19780285-19780304 Msa0673460:intron 25.0%
! TAGCAAAATGAATTCACTTT+GGG + chr4_4:19780601-19780620 Msa0673460:intron 25.0%
! GAAATATTGAAATGTGCATT+AGG + chr4_4:19780654-19780673 Msa0673460:intron 25.0%
! GTTCAAATATACTCTATTCT+TGG - chr4_4:19780821-19780840 None:intergenic 25.0%
! TGAGATGAAAAAAGAACTTA+TGG + chr4_4:19781025-19781044 Msa0673460:intron 25.0%
!! TATACCAAGCTTTATCAAAA+TGG + chr4_4:19781051-19781070 Msa0673460:intron 25.0%
! TATGCTTATACATTCTACTT+TGG + chr4_4:19781193-19781212 Msa0673460:intron 25.0%
! TTCTAAGCTTGAACTATATT+TGG + chr4_4:19781219-19781238 Msa0673460:intron 25.0%
! CAGTATCAGAAATTAAGTAA+TGG + chr4_4:19780130-19780149 Msa0673460:intron 25.0%
!! ATGTTTGTTACAAATTCACA+AGG - chr4_4:19780200-19780219 None:intergenic 25.0%
! AATAAGGAAAACAATTATGG+AGG + chr4_4:19780284-19780303 Msa0673460:intron 25.0%
! ATAAGGAAAACAATTATGGA+GGG + chr4_4:19780285-19780304 Msa0673460:intron 25.0%
! TAGCAAAATGAATTCACTTT+GGG + chr4_4:19780601-19780620 Msa0673460:intron 25.0%
! GAAATATTGAAATGTGCATT+AGG + chr4_4:19780654-19780673 Msa0673460:intron 25.0%
! GTTCAAATATACTCTATTCT+TGG - chr4_4:19780821-19780840 None:intergenic 25.0%
! TGAGATGAAAAAAGAACTTA+TGG + chr4_4:19781025-19781044 Msa0673460:intron 25.0%
!! TATACCAAGCTTTATCAAAA+TGG + chr4_4:19781051-19781070 Msa0673460:intron 25.0%
! TATGCTTATACATTCTACTT+TGG + chr4_4:19781193-19781212 Msa0673460:intron 25.0%
! TTCTAAGCTTGAACTATATT+TGG + chr4_4:19781219-19781238 Msa0673460:intron 25.0%
GCTAAAACATATTACTGAGA+TGG + chr4_4:19779783-19779802 Msa0673460:CDS 30.0%
AAACAGTACACACCAAAAAA+TGG - chr4_4:19780230-19780249 None:intergenic 30.0%
! GTACGAACCAACTTTTAATA+AGG + chr4_4:19780268-19780287 Msa0673460:intron 30.0%
ATCTCATTGTTTATTCCTTG+TGG - chr4_4:19780317-19780336 None:intergenic 30.0%
AACTGCCAATAACTAATCTA+CGG - chr4_4:19780340-19780359 None:intergenic 30.0%
CATCTTGATCATAAATCTCA+AGG + chr4_4:19780502-19780521 Msa0673460:intron 30.0%
CTAGCAAAATGAATTCACTT+TGG + chr4_4:19780600-19780619 Msa0673460:intron 30.0%
CATAACTCATTACAAACTCA+TGG - chr4_4:19780725-19780744 None:intergenic 30.0%
AGTTATGAAAACTGCAAGAT+GGG + chr4_4:19780738-19780757 Msa0673460:intron 30.0%
GTAGGAAAAAAAGAAGATTG+AGG + chr4_4:19780760-19780779 Msa0673460:intron 30.0%
ACAATTTCTACAGAGTAGAA+TGG + chr4_4:19780872-19780891 Msa0673460:intron 30.0%
CAATTTCTACAGAGTAGAAT+GGG + chr4_4:19780873-19780892 Msa0673460:intron 30.0%
CAAAATCAAACATTGTACGA+GGG - chr4_4:19781001-19781020 None:intergenic 30.0%
!! CTATCCATTTTGATAAAGCT+TGG - chr4_4:19781058-19781077 None:intergenic 30.0%
! CAAGCTTTATCAAAATGGAT+AGG + chr4_4:19781056-19781075 Msa0673460:intron 30.0%
GGAGATAAAATTAAATTCGC+AGG + chr4_4:19781077-19781096 Msa0673460:intron 30.0%
TACGCAAATATACTGTTTGT+TGG - chr4_4:19781122-19781141 None:intergenic 30.0%
GTCATGCGAATATTATTTAG+AGG - chr4_4:19781253-19781272 None:intergenic 30.0%
ACGATGAAATACGAAAACTA+AGG + chr4_4:19781466-19781485 Msa0673460:CDS 30.0%
GCTAAAACATATTACTGAGA+TGG + chr4_4:19779783-19779802 Msa0673460:CDS 30.0%
AAACAGTACACACCAAAAAA+TGG - chr4_4:19780230-19780249 None:intergenic 30.0%
! GTACGAACCAACTTTTAATA+AGG + chr4_4:19780268-19780287 Msa0673460:intron 30.0%
ATCTCATTGTTTATTCCTTG+TGG - chr4_4:19780317-19780336 None:intergenic 30.0%
AACTGCCAATAACTAATCTA+CGG - chr4_4:19780340-19780359 None:intergenic 30.0%
CATCTTGATCATAAATCTCA+AGG + chr4_4:19780502-19780521 Msa0673460:intron 30.0%
CTAGCAAAATGAATTCACTT+TGG + chr4_4:19780600-19780619 Msa0673460:intron 30.0%
CATAACTCATTACAAACTCA+TGG - chr4_4:19780725-19780744 None:intergenic 30.0%
AGTTATGAAAACTGCAAGAT+GGG + chr4_4:19780738-19780757 Msa0673460:intron 30.0%
GTAGGAAAAAAAGAAGATTG+AGG + chr4_4:19780760-19780779 Msa0673460:intron 30.0%
ACAATTTCTACAGAGTAGAA+TGG + chr4_4:19780872-19780891 Msa0673460:intron 30.0%
CAATTTCTACAGAGTAGAAT+GGG + chr4_4:19780873-19780892 Msa0673460:intron 30.0%
CAAAATCAAACATTGTACGA+GGG - chr4_4:19781001-19781020 None:intergenic 30.0%
!! CTATCCATTTTGATAAAGCT+TGG - chr4_4:19781058-19781077 None:intergenic 30.0%
! CAAGCTTTATCAAAATGGAT+AGG + chr4_4:19781056-19781075 Msa0673460:intron 30.0%
GGAGATAAAATTAAATTCGC+AGG + chr4_4:19781077-19781096 Msa0673460:intron 30.0%
TACGCAAATATACTGTTTGT+TGG - chr4_4:19781122-19781141 None:intergenic 30.0%
GTCATGCGAATATTATTTAG+AGG - chr4_4:19781253-19781272 None:intergenic 30.0%
ACGATGAAATACGAAAACTA+AGG + chr4_4:19781466-19781485 Msa0673460:CDS 30.0%
ACTGCATAGAGAACAAAGAA+AGG + chr4_4:19779684-19779703 Msa0673460:CDS 35.0%
! ACAAAGAAAGGTTGATTCCT+TGG + chr4_4:19779696-19779715 Msa0673460:CDS 35.0%
TATATACATGCATGACTGCA+TGG + chr4_4:19779921-19779940 Msa0673460:intron 35.0%
CTGCAATGAATGCAACTATT+TGG - chr4_4:19780048-19780067 None:intergenic 35.0%
TCATTGCAGTTAGCTATTGT+TGG + chr4_4:19780059-19780078 Msa0673460:intron 35.0%
! TTTTGCATTTCATGGGTCAT+AGG + chr4_4:19780166-19780185 Msa0673460:intron 35.0%
TTACAAATTCACAAGGCCAT+TGG - chr4_4:19780193-19780212 None:intergenic 35.0%
! GAGATCCGTAGATTAGTTAT+TGG + chr4_4:19780332-19780351 Msa0673460:intron 35.0%
TAGTTATTGGCAGTTCCTAT+AGG + chr4_4:19780345-19780364 Msa0673460:intron 35.0%
!! AGAACTTTTGGTAGCTAAGT+AGG + chr4_4:19780372-19780391 Msa0673460:intron 35.0%
!! GAACTTTTGGTAGCTAAGTA+GGG + chr4_4:19780373-19780392 Msa0673460:intron 35.0%
!! AACTTTTGGTAGCTAAGTAG+GGG + chr4_4:19780374-19780393 Msa0673460:intron 35.0%
TAAGTAGGGGAAATTGTACT+GGG + chr4_4:19780387-19780406 Msa0673460:intron 35.0%
!! GATCTACTTGCATTTTGATC+AGG - chr4_4:19780435-19780454 None:intergenic 35.0%
TGCAAGTAGATCTTGATCAA+TGG + chr4_4:19780443-19780462 Msa0673460:intron 35.0%
GCAAGTAGATCTTGATCAAT+GGG + chr4_4:19780444-19780463 Msa0673460:intron 35.0%
TACATTATCTAGGAAGGAGT+TGG - chr4_4:19780568-19780587 None:intergenic 35.0%
CATTACAAACTCATGGAATC+AGG - chr4_4:19780718-19780737 None:intergenic 35.0%
GAGTTATGAAAACTGCAAGA+TGG + chr4_4:19780737-19780756 Msa0673460:intron 35.0%
CCAAAATCAAACATTGTACG+AGG - chr4_4:19781002-19781021 None:intergenic 35.0%
!! CCTCGTACAATGTTTGATTT+TGG + chr4_4:19780999-19781018 Msa0673460:intron 35.0%
GTAGATTGAGTCAAAGTTGA+AGG + chr4_4:19781350-19781369 Msa0673460:intron 35.0%
TACAAGGCTTGAGAAACAAT+TGG + chr4_4:19781380-19781399 Msa0673460:CDS 35.0%
ACTGCATAGAGAACAAAGAA+AGG + chr4_4:19779684-19779703 Msa0673460:CDS 35.0%
! ACAAAGAAAGGTTGATTCCT+TGG + chr4_4:19779696-19779715 Msa0673460:CDS 35.0%
TATATACATGCATGACTGCA+TGG + chr4_4:19779921-19779940 Msa0673460:intron 35.0%
CTGCAATGAATGCAACTATT+TGG - chr4_4:19780048-19780067 None:intergenic 35.0%
TCATTGCAGTTAGCTATTGT+TGG + chr4_4:19780059-19780078 Msa0673460:intron 35.0%
! TTTTGCATTTCATGGGTCAT+AGG + chr4_4:19780166-19780185 Msa0673460:intron 35.0%
TTACAAATTCACAAGGCCAT+TGG - chr4_4:19780193-19780212 None:intergenic 35.0%
! GAGATCCGTAGATTAGTTAT+TGG + chr4_4:19780332-19780351 Msa0673460:intron 35.0%
TAGTTATTGGCAGTTCCTAT+AGG + chr4_4:19780345-19780364 Msa0673460:intron 35.0%
!! AGAACTTTTGGTAGCTAAGT+AGG + chr4_4:19780372-19780391 Msa0673460:intron 35.0%
!! GAACTTTTGGTAGCTAAGTA+GGG + chr4_4:19780373-19780392 Msa0673460:intron 35.0%
!! AACTTTTGGTAGCTAAGTAG+GGG + chr4_4:19780374-19780393 Msa0673460:intron 35.0%
TAAGTAGGGGAAATTGTACT+GGG + chr4_4:19780387-19780406 Msa0673460:intron 35.0%
!! GATCTACTTGCATTTTGATC+AGG - chr4_4:19780435-19780454 None:intergenic 35.0%
TGCAAGTAGATCTTGATCAA+TGG + chr4_4:19780443-19780462 Msa0673460:intron 35.0%
GCAAGTAGATCTTGATCAAT+GGG + chr4_4:19780444-19780463 Msa0673460:intron 35.0%
TACATTATCTAGGAAGGAGT+TGG - chr4_4:19780568-19780587 None:intergenic 35.0%
CATTACAAACTCATGGAATC+AGG - chr4_4:19780718-19780737 None:intergenic 35.0%
GAGTTATGAAAACTGCAAGA+TGG + chr4_4:19780737-19780756 Msa0673460:intron 35.0%
CCAAAATCAAACATTGTACG+AGG - chr4_4:19781002-19781021 None:intergenic 35.0%
!! CCTCGTACAATGTTTGATTT+TGG + chr4_4:19780999-19781018 Msa0673460:intron 35.0%
GTAGATTGAGTCAAAGTTGA+AGG + chr4_4:19781350-19781369 Msa0673460:intron 35.0%
TACAAGGCTTGAGAAACAAT+TGG + chr4_4:19781380-19781399 Msa0673460:CDS 35.0%
! AGAAAGGTTGATTCCTTGGA+AGG + chr4_4:19779700-19779719 Msa0673460:CDS 40.0%
TCCTTGGAAGGATATTCAGA+AGG + chr4_4:19779712-19779731 Msa0673460:CDS 40.0%
TCCTTCTGAATATCCTTCCA+AGG - chr4_4:19779716-19779735 None:intergenic 40.0%
GCATATGCAGCAAACATATG+AGG + chr4_4:19779756-19779775 Msa0673460:CDS 40.0%
! CCAAAAGTTCTGACTCCTAT+AGG - chr4_4:19780363-19780382 None:intergenic 40.0%
! CCTATAGGAGTCAGAACTTT+TGG + chr4_4:19780360-19780379 Msa0673460:intron 40.0%
CTAAGTAGGGGAAATTGTAC+TGG + chr4_4:19780386-19780405 Msa0673460:intron 40.0%
TCAAGATGTGATGCCAAACT+TGG - chr4_4:19780490-19780509 None:intergenic 40.0%
!! GAATTCACTTTGGGTTGAGA+TGG + chr4_4:19780610-19780629 Msa0673460:intron 40.0%
ATGAAAACTGCAAGATGGGT+AGG + chr4_4:19780742-19780761 Msa0673460:intron 40.0%
! CTGAAGTTCTGACTCTTGTT+GGG + chr4_4:19780783-19780802 Msa0673460:intron 40.0%
CAGGAGAAACTATCAAGAGT+AGG + chr4_4:19781096-19781115 Msa0673460:intron 40.0%
GATTGAGTCAAAGTTGAAGG+AGG + chr4_4:19781353-19781372 Msa0673460:intron 40.0%
!! ACTAAGGAAGCATCTTGAGA+AGG + chr4_4:19781482-19781501 Msa0673460:CDS 40.0%
! AGAAAGGTTGATTCCTTGGA+AGG + chr4_4:19779700-19779719 Msa0673460:CDS 40.0%
TCCTTGGAAGGATATTCAGA+AGG + chr4_4:19779712-19779731 Msa0673460:CDS 40.0%
TCCTTCTGAATATCCTTCCA+AGG - chr4_4:19779716-19779735 None:intergenic 40.0%
GCATATGCAGCAAACATATG+AGG + chr4_4:19779756-19779775 Msa0673460:CDS 40.0%
! CCAAAAGTTCTGACTCCTAT+AGG - chr4_4:19780363-19780382 None:intergenic 40.0%
! CCTATAGGAGTCAGAACTTT+TGG + chr4_4:19780360-19780379 Msa0673460:intron 40.0%
CTAAGTAGGGGAAATTGTAC+TGG + chr4_4:19780386-19780405 Msa0673460:intron 40.0%
TCAAGATGTGATGCCAAACT+TGG - chr4_4:19780490-19780509 None:intergenic 40.0%
!! GAATTCACTTTGGGTTGAGA+TGG + chr4_4:19780610-19780629 Msa0673460:intron 40.0%
ATGAAAACTGCAAGATGGGT+AGG + chr4_4:19780742-19780761 Msa0673460:intron 40.0%
! CTGAAGTTCTGACTCTTGTT+GGG + chr4_4:19780783-19780802 Msa0673460:intron 40.0%
CAGGAGAAACTATCAAGAGT+AGG + chr4_4:19781096-19781115 Msa0673460:intron 40.0%
GATTGAGTCAAAGTTGAAGG+AGG + chr4_4:19781353-19781372 Msa0673460:intron 40.0%
!! ACTAAGGAAGCATCTTGAGA+AGG + chr4_4:19781482-19781501 Msa0673460:CDS 40.0%
!!! GTTTTGACTCGATGTCGCTT+AGG + chr4_4:19780083-19780102 Msa0673460:intron 45.0%
TTCATGGGTCATAGGTCCAA+TGG + chr4_4:19780174-19780193 Msa0673460:intron 45.0%
!! TATGGAGGGTATCTTCCACA+AGG + chr4_4:19780299-19780318 Msa0673460:intron 45.0%
TAGGGGAAATTGTACTGGGA+AGG + chr4_4:19780391-19780410 Msa0673460:intron 45.0%
! AGGAAGGAGTTGGTTGAGTA+AGG - chr4_4:19780558-19780577 None:intergenic 45.0%
TGCATTAGGGATCAGAATGC+AGG + chr4_4:19780668-19780687 Msa0673460:intron 45.0%
! GCTGAAGTTCTGACTCTTGT+TGG + chr4_4:19780782-19780801 Msa0673460:intron 45.0%
! AAGTTCTGACTCTTGTTGGG+TGG + chr4_4:19780786-19780805 Msa0673460:intron 45.0%
! AGTTCTGACTCTTGTTGGGT+GGG + chr4_4:19780787-19780806 Msa0673460:intron 45.0%
AGTTGAAGGAGGCAACTACA+AGG + chr4_4:19781364-19781383 Msa0673460:CDS 45.0%
AGCAGAAGACAGTGCAAAGT+TGG + chr4_4:19781428-19781447 Msa0673460:CDS 45.0%
!!! GTTTTGACTCGATGTCGCTT+AGG + chr4_4:19780083-19780102 Msa0673460:intron 45.0%
TTCATGGGTCATAGGTCCAA+TGG + chr4_4:19780174-19780193 Msa0673460:intron 45.0%
!! TATGGAGGGTATCTTCCACA+AGG + chr4_4:19780299-19780318 Msa0673460:intron 45.0%
TAGGGGAAATTGTACTGGGA+AGG + chr4_4:19780391-19780410 Msa0673460:intron 45.0%
! AGGAAGGAGTTGGTTGAGTA+AGG - chr4_4:19780558-19780577 None:intergenic 45.0%
TGCATTAGGGATCAGAATGC+AGG + chr4_4:19780668-19780687 Msa0673460:intron 45.0%
! GCTGAAGTTCTGACTCTTGT+TGG + chr4_4:19780782-19780801 Msa0673460:intron 45.0%
! AAGTTCTGACTCTTGTTGGG+TGG + chr4_4:19780786-19780805 Msa0673460:intron 45.0%
! AGTTCTGACTCTTGTTGGGT+GGG + chr4_4:19780787-19780806 Msa0673460:intron 45.0%
AGTTGAAGGAGGCAACTACA+AGG + chr4_4:19781364-19781383 Msa0673460:CDS 45.0%
AGCAGAAGACAGTGCAAAGT+TGG + chr4_4:19781428-19781447 Msa0673460:CDS 45.0%
GTTCTGACTCTTGTTGGGTG+GGG + chr4_4:19780788-19780807 Msa0673460:intron 50.0%
TTCTGACTCTTGTTGGGTGG+GGG + chr4_4:19780789-19780808 Msa0673460:intron 50.0%
GTTCTGACTCTTGTTGGGTG+GGG + chr4_4:19780788-19780807 Msa0673460:intron 50.0%
TTCTGACTCTTGTTGGGTGG+GGG + chr4_4:19780789-19780808 Msa0673460:intron 50.0%
CATGAAGAACTCCGCAAGCG+AGG + chr4_4:19781507-19781526 Msa0673460:CDS 55.0%
ACTCCGCAAGCGAGGTGATA+AGG + chr4_4:19781515-19781534 Msa0673460:CDS 55.0%
CTCCGCAAGCGAGGTGATAA+GGG + chr4_4:19781516-19781535 Msa0673460:CDS 55.0%
TCCGCAAGCGAGGTGATAAG+GGG + chr4_4:19781517-19781536 Msa0673460:CDS 55.0%
CATGAAGAACTCCGCAAGCG+AGG + chr4_4:19781507-19781526 Msa0673460:CDS 55.0%
ACTCCGCAAGCGAGGTGATA+AGG + chr4_4:19781515-19781534 Msa0673460:CDS 55.0%
CTCCGCAAGCGAGGTGATAA+GGG + chr4_4:19781516-19781535 Msa0673460:CDS 55.0%
TCCGCAAGCGAGGTGATAAG+GGG + chr4_4:19781517-19781536 Msa0673460:CDS 55.0%
GACTCTTGTTGGGTGGGGGA+AGG + chr4_4:19780793-19780812 Msa0673460:intron 60.0%
CCCCCTTATCACCTCGCTTG+CGG - chr4_4:19781521-19781540 None:intergenic 60.0%
CCGCAAGCGAGGTGATAAGG+GGG + chr4_4:19781518-19781537 Msa0673460:CDS 60.0%
CGCAAGCGAGGTGATAAGGG+GGG + chr4_4:19781519-19781538 Msa0673460:CDS 60.0%
GACTCTTGTTGGGTGGGGGA+AGG + chr4_4:19780793-19780812 Msa0673460:intron 60.0%
CCCCCTTATCACCTCGCTTG+CGG - chr4_4:19781521-19781540 None:intergenic 60.0%
CCGCAAGCGAGGTGATAAGG+GGG + chr4_4:19781518-19781537 Msa0673460:CDS 60.0%
CGCAAGCGAGGTGATAAGGG+GGG + chr4_4:19781519-19781538 Msa0673460:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 19779679 19781557 19779679 ID=Msa0673460;Name=Msa0673460
chr4_4 mRNA 19779679 19781557 19779679 ID=Msa0673460-mRNA-1;Parent=Msa0673460;Name=Msa0673460-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|109
chr4_4 exon 19779679 19779804 19779679 ID=Msa0673460-mRNA-1:exon:5741;Parent=Msa0673460-mRNA-1
chr4_4 exon 19781354 19781557 19781354 ID=Msa0673460-mRNA-1:exon:5742;Parent=Msa0673460-mRNA-1
chr4_4 CDS 19779679 19779804 19779679 ID=Msa0673460-mRNA-1:cds;Parent=Msa0673460-mRNA-1
chr4_4 CDS 19781354 19781557 19781354 ID=Msa0673460-mRNA-1:cds;Parent=Msa0673460-mRNA-1
Gene Sequence

>Msa0673460

ATGAAACTGCATAGAGAACAAAGAAAGGTTGATTCCTTGGAAGGATATTCAGAAGGACAAATATCAGAGCTTAAAAAGCATATGCAGCAAACATATGAGGAGCAGCTAAAACATATTACTGAGATGATTGAGTCAAAGTTGAAGGAGGCAACTACAAGGCTTGAGAAACAATTGGCAGAAGAGCAAGCTGCAAGACTAAGAGCAGAAGACAGTGCAAAGTTGGCTCAAAAGAAATCAGACGATGAAATACGAAAACTAAGGAAGCATCTTGAGAAGGCGCATGAAGAACTCCGCAAGCGAGGTGATAAGGGGGGTTGTGCCATTCTATGA

Protein sequence

>Msa0673460

MKLHREQRKVDSLEGYSEGQISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEKQLAEEQAARLRAEDSAKLAQKKSDDEIRKLRKHLEKAHEELRKRGDKGGCAIL*