AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724210 MtrunA17_Chr5g0415301 75.385 325 11 3 1 275 1 306 6.42e-157 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724210 AT1G10417.2 47.782 293 114 2 1 254 1 293 2.26e-74 232
Msa0724210 AT1G10417.3 48.117 239 102 1 38 254 59 297 3.85e-61 198
Msa0724210 AT1G10417.1 48.117 239 102 1 38 254 97 335 1.09e-59 197
Msa0724210 AT1G10417.4 48.117 239 102 1 38 254 97 335 1.47e-59 197

Find 58 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAGCTCGAATGTCCATTT+TGG 0.229436 5_1:-22505126 None:intergenic
ACTCATCTTACAGAGGTTTC+AGG 0.250922 5_1:+22501515 Msa0724210:CDS
CTTTATCTTTGACAATGTTC+TGG 0.282120 5_1:-22500801 None:intergenic
TAACCGAAGTTCGAGATCTA+AGG 0.283589 5_1:+22498858 Msa0724210:CDS
TAAAGAAGAGAGACAGAAAT+TGG 0.305113 5_1:+22499477 Msa0724210:CDS
GTTTGCGGTATGCTCCAAAA+TGG 0.333502 5_1:+22505112 Msa0724210:three_prime_UTR
GAGACAGAAATTGGAGAGAA+AGG 0.341865 5_1:+22499486 Msa0724210:CDS
ATATGAAGATAGAAGATATT+AGG 0.354714 5_1:+22502440 Msa0724210:CDS
ACAAGAACTGCAGGGTGAAT+TGG 0.359919 5_1:+22499447 Msa0724210:intron
TCACCTTCAGAAAACTATAT+TGG 0.373394 5_1:+22501338 Msa0724210:CDS
GGAAACTGTCAAAAGGTATA+TGG 0.373590 5_1:+22504938 Msa0724210:intron
GTGGCTAAAATAAAACTATA+CGG 0.384325 5_1:+22505049 Msa0724210:exon
CACAGACCTAAGAAACAAAC+TGG 0.396922 5_1:+22501110 Msa0724210:CDS
TTGTCTACGTTGGCTAATAA+TGG 0.396946 5_1:-22505238 None:intergenic
GAATAAGCAGAAAGAGTTGA+AGG 0.429608 5_1:+22499629 Msa0724210:CDS
CAAGAGCTCTCCCGGTCATC+GGG 0.439375 5_1:-22505026 None:intergenic
CCGATGACCGGGAGAGCTCT+TGG 0.451213 5_1:+22505027 Msa0724210:CDS
ACCTTTGTTTACCCGATGAC+CGG 0.455864 5_1:+22505015 Msa0724210:CDS
GTCAATGAAGGTGAAGTCAT+TGG 0.459333 5_1:+22505090 Msa0724210:three_prime_UTR
GGAAAACCTGGATTAGAAGA+TGG 0.461210 5_1:-22498982 None:intergenic
CTCATCTTACAGAGGTTTCA+GGG 0.465498 5_1:+22501516 Msa0724210:CDS
GTTCACTTGAAAACAAAGAT+AGG 0.468522 5_1:+22500680 Msa0724210:CDS
TCAGTCCTTTGAGATATAGT+TGG 0.473245 5_1:-22504119 None:intergenic
CCAAGAGCTCTCCCGGTCAT+CGG 0.476282 5_1:-22505027 None:intergenic
AAGGCTTTACGTAATGAAGT+TGG 0.484234 5_1:+22501483 Msa0724210:intron
TGAATAGCTTACTTCAGTCC+AGG 0.493890 5_1:+22499658 Msa0724210:CDS
TACCCTTAGATCTCGAACTT+CGG 0.494712 5_1:-22498861 None:intergenic
TTAGCCACCAAGAGCTCTCC+CGG 0.497463 5_1:-22505034 None:intergenic
ATTATTTGATTCTATAGAGA+AGG 0.505158 5_1:+22500744 Msa0724210:CDS
ATCTCAAAGGACTGACAGAA+AGG 0.521452 5_1:+22504127 Msa0724210:CDS
CCTTTGTTTACCCGATGACC+GGG 0.522862 5_1:+22505016 Msa0724210:CDS
GTCAAAGATAAAGAAGAAGT+TGG 0.527883 5_1:+22500811 Msa0724210:CDS
ATTTGATTCTATAGAGAAGG+AGG 0.540704 5_1:+22500747 Msa0724210:CDS
ACAACACCATCTTCTAATCC+AGG 0.541306 5_1:+22498976 Msa0724210:CDS
TAATTTAATTTCAGACAAAG+AGG 0.544715 5_1:+22501380 Msa0724210:CDS
GTGGATGATGATTCAGAGTT+GGG 0.548667 5_1:+22505213 Msa0724210:three_prime_UTR
GTATGTAGGAAACTGTCAAA+AGG 0.558220 5_1:+22504931 Msa0724210:intron
GAATAGCTTACTTCAGTCCA+GGG 0.560439 5_1:+22499659 Msa0724210:CDS
AACCGAAGTTCGAGATCTAA+GGG 0.565135 5_1:+22498859 Msa0724210:CDS
GACAATTGACATTATCTACC+AGG 0.565479 5_1:-22505185 None:intergenic
TCAGAAAACTATATTGGCAA+AGG 0.574990 5_1:+22501344 Msa0724210:CDS
AATAAGCAGAAAGAGTTGAA+GGG 0.576372 5_1:+22499630 Msa0724210:CDS
CAATCATTAGCAGTCAATGA+AGG 0.577053 5_1:+22505078 Msa0724210:three_prime_UTR
ATGACCGGGAGAGCTCTTGG+TGG 0.583302 5_1:+22505030 Msa0724210:CDS
TAGAAGATGGTGTTGTTCAG+TGG 0.585006 5_1:-22498969 None:intergenic
TGTGGATGATGATTCAGAGT+TGG 0.591904 5_1:+22505212 Msa0724210:three_prime_UTR
TACAACCAACTATATCTCAA+AGG 0.601313 5_1:+22504114 Msa0724210:CDS
TCTGAATCATCATCCACACT+TGG 0.601923 5_1:-22505207 None:intergenic
GAGAATTTATCTTCTCTGAG+AGG 0.618426 5_1:-22500714 None:intergenic
CCCGGTCATCGGGTAAACAA+AGG 0.619006 5_1:-22505016 None:intergenic
TGTTACTAATATGAATGAAG+AGG 0.620183 5_1:+22501542 Msa0724210:CDS
GGTGAGGAGCAACTTAGATG+TGG 0.620760 5_1:+22504959 Msa0724210:CDS
AAGATGGTGTTGTTCAGTGG+CGG 0.623407 5_1:-22498966 None:intergenic
CTGTCAAAAGGTATATGGTG+AGG 0.624467 5_1:+22504943 Msa0724210:CDS
AAGGTGAAGTCATTGGTTTG+CGG 0.639344 5_1:+22505097 Msa0724210:three_prime_UTR
GCTTAAGACTCATCTTACAG+AGG 0.643186 5_1:+22501508 Msa0724210:CDS
TAATGTCAATTGTCCAAGTG+TGG 0.645416 5_1:+22505194 Msa0724210:three_prime_UTR
AAACAAACTGGAAAACAAAG+AGG 0.646544 5_1:+22501122 Msa0724210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTTATTTTTTT+TGG + chr5_1:22500573-22500592 Msa0724210:intron 0.0%
!!! TTTTTGATTTTTGAAAAAAT+GGG + chr5_1:22500627-22500646 Msa0724210:intron 10.0%
!! AAATAAATTTAAGAAATGAA+AGG + chr5_1:22503688-22503707 Msa0724210:intron 10.0%
!!! ATGGATTTTTATATACTTTA+TGG - chr5_1:22499078-22499097 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTGGAAA+AGG + chr5_1:22499543-22499562 Msa0724210:intron 15.0%
!!! GTTTTTTTTTTTTTGGAAAA+GGG + chr5_1:22499544-22499563 Msa0724210:intron 15.0%
!! CAATTAGAAAACAATAAAAA+CGG - chr5_1:22499725-22499744 None:intergenic 15.0%
!!! TCAAAAATTTTAATTACCTT+TGG + chr5_1:22500281-22500300 Msa0724210:intron 15.0%
!!! GTTTTTGATTTTTGAAAAAA+TGG + chr5_1:22500626-22500645 Msa0724210:intron 15.0%
!!! AATTTTTTTCATCTTTTTCT+AGG + chr5_1:22501572-22501591 Msa0724210:intron 15.0%
!! TAATGTACAATAGAAATATA+TGG + chr5_1:22501825-22501844 Msa0724210:intron 15.0%
!! AGAAAGAAAGAAAAAAAATT+GGG - chr5_1:22501981-22502000 None:intergenic 15.0%
!! AATTCATATAATATTTCCAA+CGG - chr5_1:22502113-22502132 None:intergenic 15.0%
!! ATATCAATAATAAATGCAAA+AGG + chr5_1:22502213-22502232 Msa0724210:intron 15.0%
!!! AATATTGGTTTATAAAGAAT+AGG - chr5_1:22502726-22502745 None:intergenic 15.0%
!! TTATAATACAATAATCAAGT+TGG - chr5_1:22502993-22503012 None:intergenic 15.0%
!! AACTTGATTATTGTATTATA+AGG + chr5_1:22502992-22503011 Msa0724210:intron 15.0%
!! CTATTATTATATACCAATAA+AGG + chr5_1:22503514-22503533 Msa0724210:intron 15.0%
!! TCATTACATATTAAAATCTA+TGG + chr5_1:22503759-22503778 Msa0724210:intron 15.0%
!!! CTTGAATACTAAAAATATTT+TGG + chr5_1:22503992-22504011 Msa0724210:intron 15.0%
!! TAAAATTTCTTATACTTCTA+GGG - chr5_1:22504755-22504774 None:intergenic 15.0%
!!! TTTTCCAAAATTCTTCAATT+AGG + chr5_1:22498999-22499018 Msa0724210:intron 20.0%
!!! AAAACCTAATTGAAGAATTT+TGG - chr5_1:22499006-22499025 None:intergenic 20.0%
!!! TGAGTGTGTTTTTTTTTTTT+TGG + chr5_1:22499537-22499556 Msa0724210:intron 20.0%
!! TTCTATTAGAACCTAATAAA+GGG - chr5_1:22499793-22499812 None:intergenic 20.0%
!! TTTCTATTAGAACCTAATAA+AGG - chr5_1:22499794-22499813 None:intergenic 20.0%
!! ATCATGTTAATTGAAAATCA+CGG + chr5_1:22499849-22499868 Msa0724210:intron 20.0%
!! AGTTATATATACACAAATAC+TGG + chr5_1:22499894-22499913 Msa0724210:intron 20.0%
!! TTTGCCTAATCTTAAAATTT+GGG - chr5_1:22500195-22500214 None:intergenic 20.0%
!!! TTAAAATTTTTGAGTTGAGA+GGG - chr5_1:22500274-22500293 None:intergenic 20.0%
!!! ATTAAAATTTTTGAGTTGAG+AGG - chr5_1:22500275-22500294 None:intergenic 20.0%
!! AAATTCTAATCCAAAATCTT+GGG - chr5_1:22500496-22500515 None:intergenic 20.0%
!! AAAATTCTAATCCAAAATCT+TGG - chr5_1:22500497-22500516 None:intergenic 20.0%
!!! AAGATTTTGGATTAGAATTT+TGG + chr5_1:22500496-22500515 Msa0724210:intron 20.0%
!!! TTTTTTGGAAATTCTGATTA+TGG + chr5_1:22500588-22500607 Msa0724210:intron 20.0%
!! AAAATCAAAAACACATTCAA+AGG - chr5_1:22500618-22500637 None:intergenic 20.0%
!! ATTATTTGATTCTATAGAGA+AGG + chr5_1:22500744-22500763 Msa0724210:CDS 20.0%
!! AAAATGTAGAATAGAACAAA+GGG - chr5_1:22501019-22501038 None:intergenic 20.0%
!! TAAAATGTAGAATAGAACAA+AGG - chr5_1:22501020-22501039 None:intergenic 20.0%
!!! TAATTTAATTTCAGACAAAG+AGG + chr5_1:22501380-22501399 Msa0724210:CDS 20.0%
!!! ATTGTTAACTTTTGTTTGTT+AGG + chr5_1:22501621-22501640 Msa0724210:intron 20.0%
!! TAATTTCATATGAAAAGAAC+CGG - chr5_1:22501726-22501745 None:intergenic 20.0%
!!! TAGTGAATTAGTTATTTTTC+TGG + chr5_1:22501901-22501920 Msa0724210:intron 20.0%
!!! TTTTTCTGGTAAATGTAAAT+AGG + chr5_1:22501915-22501934 Msa0724210:intron 20.0%
!! GAGAAAGAAAGAAAAAAAAT+TGG - chr5_1:22501982-22502001 None:intergenic 20.0%
!!! ATTTTATCTGCTTTGTAAAT+TGG + chr5_1:22502049-22502068 Msa0724210:intron 20.0%
!!! TTTTATCTGCTTTGTAAATT+GGG + chr5_1:22502050-22502069 Msa0724210:intron 20.0%
!! ATATGAAGATAGAAGATATT+AGG + chr5_1:22502440-22502459 Msa0724210:CDS 20.0%
!! AAAATAAAACCAAAATCAAC+AGG - chr5_1:22502601-22502620 None:intergenic 20.0%
!!! TCTAGTTTTGTTTTGAAATT+TGG - chr5_1:22502647-22502666 None:intergenic 20.0%
!!! ATGAAACAACATATTTTTCA+TGG + chr5_1:22503153-22503172 Msa0724210:intron 20.0%
!!! AGAATTTTTAGCTTAATTTC+AGG + chr5_1:22503886-22503905 Msa0724210:intron 20.0%
!! AATCATTCTATTAACACATT+TGG - chr5_1:22504039-22504058 None:intergenic 20.0%
!! AAAATGTTCAAGTAACAATA+TGG - chr5_1:22504311-22504330 None:intergenic 20.0%
!! CTAAAATTTCTTATACTTCT+AGG - chr5_1:22504756-22504775 None:intergenic 20.0%
!! GAAATCAATATAATAACCTT+TGG + chr5_1:22504869-22504888 Msa0724210:intron 20.0%
!! AATTTCAGTAACTCCATTTT+TGG - chr5_1:22498806-22498825 None:intergenic 25.0%
!!! GACGGATTTTATATAGTTTA+AGG + chr5_1:22499274-22499293 Msa0724210:intron 25.0%
! CAAAAATTGCATACAAAGAA+AGG - chr5_1:22499382-22499401 None:intergenic 25.0%
!!! TGATTTTGGTTTTGTAATGT+AGG + chr5_1:22499572-22499591 Msa0724210:intron 25.0%
!! TATTAGGTTCTAATAGAAAG+TGG + chr5_1:22499795-22499814 Msa0724210:intron 25.0%
!!! AATAGAAAGTGGTTTTACAT+TGG + chr5_1:22499806-22499825 Msa0724210:intron 25.0%
! TCATTATGGTTCATACAATA+GGG - chr5_1:22499955-22499974 None:intergenic 25.0%
! TTCATTATGGTTCATACAAT+AGG - chr5_1:22499956-22499975 None:intergenic 25.0%
! GAATTTCTAACACTTCATTA+TGG - chr5_1:22499969-22499988 None:intergenic 25.0%
! CTTTGCCTAATCTTAAAATT+TGG - chr5_1:22500196-22500215 None:intergenic 25.0%
!!! TAAAATTTTTGAGTTGAGAG+GGG - chr5_1:22500273-22500292 None:intergenic 25.0%
! AATTCTAATCCAAAATCTTG+GGG - chr5_1:22500495-22500514 None:intergenic 25.0%
! GAATATCACTAAAACAAAGA+AGG + chr5_1:22500529-22500548 Msa0724210:intron 25.0%
!! GTTTTATATCAAGCATATTC+TGG + chr5_1:22500771-22500790 Msa0724210:CDS 25.0%
!!! TTGGTAAGTAGTTTTTTTAC+TGG + chr5_1:22500830-22500849 Msa0724210:intron 25.0%
! AATATGCAATGAAATTTCTG+TGG - chr5_1:22500897-22500916 None:intergenic 25.0%
! AAAGGAAAGACAAAAATAAC+TGG - chr5_1:22500920-22500939 None:intergenic 25.0%
! GCATTTGAAAAAGAATTTGT+TGG + chr5_1:22500981-22501000 Msa0724210:CDS 25.0%
!!! TGATATGTTCTAGAACAAAA+AGG - chr5_1:22501092-22501111 None:intergenic 25.0%
! ATATATCTTCTATTTGAGCT+TGG - chr5_1:22501224-22501243 None:intergenic 25.0%
! TGTTACTAATATGAATGAAG+AGG + chr5_1:22501542-22501561 Msa0724210:CDS 25.0%
! GTTTATTTCAAAGATATACG+AGG + chr5_1:22501681-22501700 Msa0724210:intron 25.0%
! ATTTAGATCACTAAGATCAA+AGG - chr5_1:22501866-22501885 None:intergenic 25.0%
! TTTATCTGCTTTGTAAATTG+GGG + chr5_1:22502051-22502070 Msa0724210:intron 25.0%
!! ATCTTCATATCTCTTTTTCT+TGG - chr5_1:22502430-22502449 None:intergenic 25.0%
! GAAAGAAAATAATACTCTGT+TGG + chr5_1:22502526-22502545 Msa0724210:intron 25.0%
! TATGAATGAAATGAAATGAG+TGG - chr5_1:22502901-22502920 None:intergenic 25.0%
! AATAATAATGTCTCTTTCCT+AGG + chr5_1:22502925-22502944 Msa0724210:intron 25.0%
! ATTATTGTATTATAAGGCAC+AGG + chr5_1:22502998-22503017 Msa0724210:intron 25.0%
!!! TAGTTGTTGTTTGTATAATC+AGG - chr5_1:22503074-22503093 None:intergenic 25.0%
!! ATTGCAGAAAACTGTAATTT+TGG - chr5_1:22503272-22503291 None:intergenic 25.0%
! CTCAAAAGTTTCAGAAAAAA+GGG + chr5_1:22503352-22503371 Msa0724210:intron 25.0%
! TCAAAAGTTTCAGAAAAAAG+GGG + chr5_1:22503353-22503372 Msa0724210:intron 25.0%
!!! TTATTTTTGCAAAGTGAGTT+TGG + chr5_1:22503393-22503412 Msa0724210:intron 25.0%
! TCCTAGATTTCTTCATAAAT+CGG - chr5_1:22503490-22503509 None:intergenic 25.0%
! TTATATACCAATAAAGGTTG+TGG + chr5_1:22503520-22503539 Msa0724210:intron 25.0%
! ACGACTTATTTCATTATGTA+AGG + chr5_1:22503726-22503745 Msa0724210:intron 25.0%
! CGACTTATTTCATTATGTAA+GGG + chr5_1:22503727-22503746 Msa0724210:intron 25.0%
!! TTTTGTCAGTGATCTAATTT+AGG + chr5_1:22503913-22503932 Msa0724210:intron 25.0%
! ACAATATCCATCAATTTACA+CGG - chr5_1:22504188-22504207 None:intergenic 25.0%
! CTACTAGAAGAATGAATAAA+GGG - chr5_1:22504547-22504566 None:intergenic 25.0%
! CTTTATTCATTCTTCTAGTA+GGG + chr5_1:22504546-22504565 Msa0724210:intron 25.0%
!! TTCATCTTTTAATGAACGTA+TGG + chr5_1:22504986-22505005 Msa0724210:CDS 25.0%
!! TCATCTTTTAATGAACGTAT+GGG + chr5_1:22504987-22505006 Msa0724210:CDS 25.0%
! GTGGCTAAAATAAAACTATA+CGG + chr5_1:22505049-22505068 Msa0724210:exon 25.0%
! TGAACTAGATTAAAAAATCC+TGG + chr5_1:22505167-22505186 Msa0724210:three_prime_UTR 25.0%
AGAAGAAACGGAATTGAAAT+TGG - chr5_1:22498910-22498929 None:intergenic 30.0%
!! TTGAAGAATTTTGGAAAACC+TGG - chr5_1:22498997-22499016 None:intergenic 30.0%
ACTCGTTGGTACTAAATTAA+TGG - chr5_1:22499097-22499116 None:intergenic 30.0%
GTCTCTGCTATTAAAATGTT+GGG - chr5_1:22499248-22499267 None:intergenic 30.0%
TGTCTCTGCTATTAAAATGT+TGG - chr5_1:22499249-22499268 None:intergenic 30.0%
AATAGCAGAGACAAAATTGA+CGG + chr5_1:22499256-22499275 Msa0724210:intron 30.0%
CTTAGAGACTAAATTGAAGA+TGG + chr5_1:22499322-22499341 Msa0724210:intron 30.0%
TAGTTTAGGGACTAAATTGA+TGG + chr5_1:22499350-22499369 Msa0724210:intron 30.0%
TAAAGAAGAGAGACAGAAAT+TGG + chr5_1:22499477-22499496 Msa0724210:CDS 30.0%
!!! GGAAAAGGGATTATTGATTT+TGG + chr5_1:22499558-22499577 Msa0724210:intron 30.0%
AATAAGCAGAAAGAGTTGAA+GGG + chr5_1:22499630-22499649 Msa0724210:CDS 30.0%
! AAATTTTGTGATTGCTTACG+AGG + chr5_1:22499683-22499702 Msa0724210:CDS 30.0%
!!! GTCTGTTGTTTTTACATAGA+TGG + chr5_1:22499918-22499937 Msa0724210:intron 30.0%
!! TTTTACATAGATGGTGTTAG+AGG + chr5_1:22499927-22499946 Msa0724210:intron 30.0%
CTAATCTTAAAATTTGGGCT+GGG - chr5_1:22500190-22500209 None:intergenic 30.0%
TTAAACGAGTAAAGTATGAG+AGG + chr5_1:22500230-22500249 Msa0724210:intron 30.0%
! TTACCTTTGGTAGTTCAATT+TGG + chr5_1:22500294-22500313 Msa0724210:intron 30.0%
TTTCAGTTATGCTCAAATTC+AGG - chr5_1:22500337-22500356 None:intergenic 30.0%
AGCATAACTGAAATAGATGA+GGG + chr5_1:22500344-22500363 Msa0724210:intron 30.0%
AGAAGGCTCATACTTTATAT+TGG + chr5_1:22500546-22500565 Msa0724210:intron 30.0%
!! TTTGAAAAAATGGGTTACAC+AGG + chr5_1:22500636-22500655 Msa0724210:intron 30.0%
GTTCACTTGAAAACAAAGAT+AGG + chr5_1:22500680-22500699 Msa0724210:CDS 30.0%
ATTTGATTCTATAGAGAAGG+AGG + chr5_1:22500747-22500766 Msa0724210:CDS 30.0%
CTTTATCTTTGACAATGTTC+TGG - chr5_1:22500804-22500823 None:intergenic 30.0%
GTCAAAGATAAAGAAGAAGT+TGG + chr5_1:22500811-22500830 Msa0724210:CDS 30.0%
!! TGTTTTCCAGTTTGTTTCTT+AGG - chr5_1:22501119-22501138 None:intergenic 30.0%
AAACAAACTGGAAAACAAAG+AGG + chr5_1:22501122-22501141 Msa0724210:CDS 30.0%
!!! TCTATCCTTTTTTCTTGACT+CGG - chr5_1:22501148-22501167 None:intergenic 30.0%
TGATATAGATAACTATTCCG+TGG - chr5_1:22501255-22501274 None:intergenic 30.0%
TCACCTTCAGAAAACTATAT+TGG + chr5_1:22501338-22501357 Msa0724210:CDS 30.0%
! TTGCCAATATAGTTTTCTGA+AGG - chr5_1:22501344-22501363 None:intergenic 30.0%
TCAGAAAACTATATTGGCAA+AGG + chr5_1:22501344-22501363 Msa0724210:CDS 30.0%
! CCTTTGGATTATTTTCGAAA+AGG - chr5_1:22501467-22501486 None:intergenic 30.0%
! CCTTTTCGAAAATAATCCAA+AGG + chr5_1:22501464-22501483 Msa0724210:intron 30.0%
ACTAATATGAATGAAGAGGT+AGG + chr5_1:22501546-22501565 Msa0724210:intron 30.0%
! TTCATCTTTTTCTAGGTAGA+AGG + chr5_1:22501579-22501598 Msa0724210:intron 30.0%
! TCATCTTTTTCTAGGTAGAA+GGG + chr5_1:22501580-22501599 Msa0724210:intron 30.0%
AAAGATATACGAGGACAATA+AGG + chr5_1:22501690-22501709 Msa0724210:intron 30.0%
TTCAATCTTGAGAACTAACA+AGG - chr5_1:22502276-22502295 None:intergenic 30.0%
! ATGAGAATAACTTTTTGTCC+TGG - chr5_1:22502354-22502373 None:intergenic 30.0%
AAGTATCTGTCTGAACTTAT+AGG + chr5_1:22502490-22502509 Msa0724210:intron 30.0%
!!! TAACTCATTCCTGTTGATTT+TGG + chr5_1:22502589-22502608 Msa0724210:intron 30.0%
GAGTTGTAGGAACAAAATAT+TGG - chr5_1:22502741-22502760 None:intergenic 30.0%
CTATATCTCTCATCATGAAT+TGG - chr5_1:22502767-22502786 None:intergenic 30.0%
CAATTCATGATGAGAGATAT+AGG + chr5_1:22502765-22502784 Msa0724210:intron 30.0%
AAACCTGTCTATTTGCAATA+AGG - chr5_1:22502867-22502886 None:intergenic 30.0%
GTTTAGCAAATACTAGCAAT+TGG + chr5_1:22503211-22503230 Msa0724210:intron 30.0%
!!! CCTTTTTTCTGAAACTTTTG+AGG - chr5_1:22503354-22503373 None:intergenic 30.0%
CCTCAAAAGTTTCAGAAAAA+AGG + chr5_1:22503351-22503370 Msa0724210:intron 30.0%
! CTATCATCTGTATCTTTTGA+TGG + chr5_1:22503610-22503629 Msa0724210:intron 30.0%
TAGTCATCACTCTTTGAATT+TGG + chr5_1:22503840-22503859 Msa0724210:intron 30.0%
GTGTTAATAGAATGATTCAC+TGG + chr5_1:22504042-22504061 Msa0724210:intron 30.0%
TACAACCAACTATATCTCAA+AGG + chr5_1:22504114-22504133 Msa0724210:CDS 30.0%
TAATTTATTTATGCTCCCAC+AGG + chr5_1:22504162-22504181 Msa0724210:intron 30.0%
TACGTTGTATATTTAGCTGT+AGG + chr5_1:22504334-22504353 Msa0724210:intron 30.0%
CCTACTAGAAGAATGAATAA+AGG - chr5_1:22504548-22504567 None:intergenic 30.0%
CCTTTATTCATTCTTCTAGT+AGG + chr5_1:22504545-22504564 Msa0724210:intron 30.0%
CGGTGGAAAAATATTATTTG+AGG - chr5_1:22504645-22504664 None:intergenic 30.0%
GAAGTTAGAGGAAGAAGAAA+CGG - chr5_1:22498922-22498941 None:intergenic 35.0%
CCTGAAAAAGTTGAAGTTAG+AGG - chr5_1:22498934-22498953 None:intergenic 35.0%
!! CCTCTAACTTCAACTTTTTC+AGG + chr5_1:22498931-22498950 Msa0724210:intron 35.0%
! TCGCTGTTTCGATGAATTAA+CGG + chr5_1:22499042-22499061 Msa0724210:intron 35.0%
TGAAGATGGAGTGATAGTTT+AGG + chr5_1:22499336-22499355 Msa0724210:intron 35.0%
GAAGATGGAGTGATAGTTTA+GGG + chr5_1:22499337-22499356 Msa0724210:intron 35.0%
TTTGAGAATAGAAGCAGAAG+CGG + chr5_1:22499398-22499417 Msa0724210:intron 35.0%
TAGAAAGATACAAGAACTGC+AGG + chr5_1:22499438-22499457 Msa0724210:intron 35.0%
AGAAAGATACAAGAACTGCA+GGG + chr5_1:22499439-22499458 Msa0724210:intron 35.0%
AGAAATTGGAGAGAAAGGTT+TGG + chr5_1:22499491-22499510 Msa0724210:intron 35.0%
GAAATTGGAGAGAAAGGTTT+GGG + chr5_1:22499492-22499511 Msa0724210:intron 35.0%
AAATTGGAGAGAAAGGTTTG+GGG + chr5_1:22499493-22499512 Msa0724210:intron 35.0%
GAATAAGCAGAAAGAGTTGA+AGG + chr5_1:22499629-22499648 Msa0724210:CDS 35.0%
! AGCAATCACAAAATTTTCCC+TGG - chr5_1:22499679-22499698 None:intergenic 35.0%
CTACTAGTGTTCCCTTTATT+AGG + chr5_1:22499779-22499798 Msa0724210:intron 35.0%
ACTTTATACACGCACTACAT+AGG - chr5_1:22500120-22500139 None:intergenic 35.0%
TGTAGTGCGTGTATAAAGTT+TGG + chr5_1:22500121-22500140 Msa0724210:intron 35.0%
GTAGTGCGTGTATAAAGTTT+GGG + chr5_1:22500122-22500141 Msa0724210:intron 35.0%
CCTAATCTTAAAATTTGGGC+TGG - chr5_1:22500191-22500210 None:intergenic 35.0%
!!! CCAGCCCAAATTTTAAGATT+AGG + chr5_1:22500188-22500207 Msa0724210:intron 35.0%
GAGCATAACTGAAATAGATG+AGG + chr5_1:22500343-22500362 Msa0724210:intron 35.0%
GATAACCATGCAATGAAATC+AGG + chr5_1:22500386-22500405 Msa0724210:intron 35.0%
CATATCCTGATTTCATTGCA+TGG - chr5_1:22500394-22500413 None:intergenic 35.0%
AGAGCAAAAGTTGAGTTAGT+AGG + chr5_1:22500463-22500482 Msa0724210:intron 35.0%
GAGAATTTATCTTCTCTGAG+AGG - chr5_1:22500717-22500736 None:intergenic 35.0%
GACCAGCTTGAAAAACAAAA+TGG + chr5_1:22500947-22500966 Msa0724210:CDS 35.0%
!!! GTCCATTTTGTTTTTCAAGC+TGG - chr5_1:22500952-22500971 None:intergenic 35.0%
CTTGAAAAACAAAATGGACC+AGG + chr5_1:22500953-22500972 Msa0724210:CDS 35.0%
AAGATATATCCATACCACCA+CGG + chr5_1:22501235-22501254 Msa0724210:intron 35.0%
TATAGATAACTATTCCGTGG+TGG - chr5_1:22501252-22501271 None:intergenic 35.0%
ACTTCATTACGTAAAGCCTT+TGG - chr5_1:22501483-22501502 None:intergenic 35.0%
AAGGCTTTACGTAATGAAGT+TGG + chr5_1:22501483-22501502 Msa0724210:intron 35.0%
AATATGAATGAAGAGGTAGG+TGG + chr5_1:22501549-22501568 Msa0724210:intron 35.0%
TTCATATGAAAAGAACCGGA+GGG - chr5_1:22501722-22501741 None:intergenic 35.0%
TTTCATATGAAAAGAACCGG+AGG - chr5_1:22501723-22501742 None:intergenic 35.0%
!! GAACAGAAGAAAGGCATTAA+AGG - chr5_1:22501756-22501775 None:intergenic 35.0%
GAGAAATGAGAACAGAAGAA+AGG - chr5_1:22501765-22501784 None:intergenic 35.0%
CTGGTAAATGTAAATAGGAC+CGG + chr5_1:22501920-22501939 Msa0724210:intron 35.0%
GCTAGAAAAGTAGTTATCTC+CGG - chr5_1:22501942-22501961 None:intergenic 35.0%
ATTGGGAAAAATGTGATCCA+GGG - chr5_1:22501964-22501983 None:intergenic 35.0%
AATTGGGAAAAATGTGATCC+AGG - chr5_1:22501965-22501984 None:intergenic 35.0%
TCTTGAGAACTAACAAGGAA+TGG - chr5_1:22502271-22502290 None:intergenic 35.0%
!!! TGCAAAGCTTGTTTTATTCC+AGG + chr5_1:22502333-22502352 Msa0724210:intron 35.0%
ATAATACTCTGTTGGAGACA+AGG + chr5_1:22502534-22502553 Msa0724210:intron 35.0%
!!! AGACAAGGCATGTCTTTTTT+TGG + chr5_1:22502549-22502568 Msa0724210:intron 35.0%
!!! AAGGCATGTCTTTTTTTGGT+TGG + chr5_1:22502553-22502572 Msa0724210:intron 35.0%
CATGAATTGGTATGAGTTGT+AGG - chr5_1:22502754-22502773 None:intergenic 35.0%
AACACTATGGATTTCTCATC+AGG - chr5_1:22502803-22502822 None:intergenic 35.0%
AAATCCATAGTGTTTCGATG+AGG + chr5_1:22502809-22502828 Msa0724210:intron 35.0%
AATCCATAGTGTTTCGATGA+GGG + chr5_1:22502810-22502829 Msa0724210:intron 35.0%
TCACCTTATTGCAAATAGAC+AGG + chr5_1:22502861-22502880 Msa0724210:intron 35.0%
ATAATGTCTCTTTCCTAGGA+TGG + chr5_1:22502929-22502948 Msa0724210:intron 35.0%
TGAACAAAATCTTCCATCCT+AGG - chr5_1:22502945-22502964 None:intergenic 35.0%
! GCCGATTTATGAAGAAATCT+AGG + chr5_1:22503486-22503505 Msa0724210:intron 35.0%
ATACCAATAAAGGTTGTGGT+TGG + chr5_1:22503524-22503543 Msa0724210:intron 35.0%
! TCATCTGTATCTTTTGATGG+AGG + chr5_1:22503613-22503632 Msa0724210:intron 35.0%
TGTAATGATTAGACAGCAAG+TGG + chr5_1:22503647-22503666 Msa0724210:intron 35.0%
GTAATGATTAGACAGCAAGT+GGG + chr5_1:22503648-22503667 Msa0724210:intron 35.0%
TGGACAGAACAGTTAAACTA+TGG + chr5_1:22503779-22503798 Msa0724210:intron 35.0%
TTTCAAAAACCAAATGTCCC+TGG - chr5_1:22503866-22503885 None:intergenic 35.0%
! GTCTGTACTCTCTATTTTCA+AGG + chr5_1:22503946-22503965 Msa0724210:intron 35.0%
!!! TGGCTTGCTTCAATCTTTTT+TGG + chr5_1:22504086-22504105 Msa0724210:intron 35.0%
!! TCAGTCCTTTGAGATATAGT+TGG - chr5_1:22504122-22504141 None:intergenic 35.0%
ATGCATGTGTCGTCTATTAT+GGG + chr5_1:22504370-22504389 Msa0724210:intron 35.0%
CATTCTTCTAGTAGGGAATA+TGG + chr5_1:22504553-22504572 Msa0724210:intron 35.0%
! ACCTTTGGCTTAAGATTGAT+TGG + chr5_1:22504884-22504903 Msa0724210:intron 35.0%
ACCAATCAATCTTAAGCCAA+AGG - chr5_1:22504888-22504907 None:intergenic 35.0%
GTATGTAGGAAACTGTCAAA+AGG + chr5_1:22504931-22504950 Msa0724210:intron 35.0%
! GGAAACTGTCAAAAGGTATA+TGG + chr5_1:22504938-22504957 Msa0724210:intron 35.0%
CAATCATTAGCAGTCAATGA+AGG + chr5_1:22505078-22505097 Msa0724210:three_prime_UTR 35.0%
! TAAAGCTCGAATGTCCATTT+TGG - chr5_1:22505129-22505148 None:intergenic 35.0%
GACAATTGACATTATCTACC+AGG - chr5_1:22505188-22505207 None:intergenic 35.0%
TAATGTCAATTGTCCAAGTG+TGG + chr5_1:22505194-22505213 Msa0724210:three_prime_UTR 35.0%
TAACCGAAGTTCGAGATCTA+AGG + chr5_1:22498858-22498877 Msa0724210:CDS 40.0%
AACCGAAGTTCGAGATCTAA+GGG + chr5_1:22498859-22498878 Msa0724210:CDS 40.0%
TACCCTTAGATCTCGAACTT+CGG - chr5_1:22498864-22498883 None:intergenic 40.0%
! ATTGGCGTTGGAGAAGAAAA+TGG - chr5_1:22498892-22498911 None:intergenic 40.0%
AACGGAATTGAAATTGGCGT+TGG - chr5_1:22498904-22498923 None:intergenic 40.0%
!! TAGAAGATGGTGTTGTTCAG+TGG - chr5_1:22498972-22498991 None:intergenic 40.0%
ACAACACCATCTTCTAATCC+AGG + chr5_1:22498976-22498995 Msa0724210:CDS 40.0%
! GGAAAACCTGGATTAGAAGA+TGG - chr5_1:22498985-22499004 None:intergenic 40.0%
GAGACAGAAATTGGAGAGAA+AGG + chr5_1:22499486-22499505 Msa0724210:CDS 40.0%
TGAATAGCTTACTTCAGTCC+AGG + chr5_1:22499658-22499677 Msa0724210:CDS 40.0%
GAATAGCTTACTTCAGTCCA+GGG + chr5_1:22499659-22499678 Msa0724210:CDS 40.0%
TAGAAATTCCGCCTTCATTG+CGG + chr5_1:22499980-22499999 Msa0724210:intron 40.0%
ATTGACACCCAACACAATGA+AGG - chr5_1:22500062-22500081 None:intergenic 40.0%
TTCATTGTGTTGGGTGTCAA+TGG + chr5_1:22500061-22500080 Msa0724210:intron 40.0%
TCATTGTGTTGGGTGTCAAT+GGG + chr5_1:22500062-22500081 Msa0724210:intron 40.0%
AAAACCACCTTGTAAGGTGA+GGG - chr5_1:22500151-22500170 None:intergenic 40.0%
CCTTACAAAACCACCTTGTA+AGG - chr5_1:22500157-22500176 None:intergenic 40.0%
!!! CCTTACAAGGTGGTTTTGTA+AGG + chr5_1:22500154-22500173 Msa0724210:intron 40.0%
CAGCCAAATTGAACTACCAA+AGG - chr5_1:22500300-22500319 None:intergenic 40.0%
!!! AGTAGTTTTTTTACTGGCGC+AGG + chr5_1:22500836-22500855 Msa0724210:intron 40.0%
! GTTCGAAGCATGCATACTTT+TGG + chr5_1:22500858-22500877 Msa0724210:intron 40.0%
TCAAGCTGGTCACTGAATAA+AGG - chr5_1:22500938-22500957 None:intergenic 40.0%
!!! CTTTTTCAAATGCTGAGACC+TGG - chr5_1:22500974-22500993 None:intergenic 40.0%
CACAGACCTAAGAAACAAAC+TGG + chr5_1:22501110-22501129 Msa0724210:CDS 40.0%
ATAACTATTCCGTGGTGGTA+TGG - chr5_1:22501247-22501266 None:intergenic 40.0%
GCTTAAGACTCATCTTACAG+AGG + chr5_1:22501508-22501527 Msa0724210:CDS 40.0%
ACTCATCTTACAGAGGTTTC+AGG + chr5_1:22501515-22501534 Msa0724210:CDS 40.0%
CTCATCTTACAGAGGTTTCA+GGG + chr5_1:22501516-22501535 Msa0724210:CDS 40.0%
ACAATAAGGAATACTCCCTC+CGG + chr5_1:22501704-22501723 Msa0724210:intron 40.0%
!! GATAACTACTTTTCTAGCCC+TGG + chr5_1:22501944-22501963 Msa0724210:intron 40.0%
TTTCCCTCATCGAAACACTA+TGG - chr5_1:22502816-22502835 None:intergenic 40.0%
GGTGCTTCTTTCGTTATTTG+CGG - chr5_1:22503251-22503270 None:intergenic 40.0%
!!! GTGAGTTTGGTTTTCTTGAG+TGG + chr5_1:22503406-22503425 Msa0724210:intron 40.0%
ATGCCAACCACAACCTTTAT+TGG - chr5_1:22503530-22503549 None:intergenic 40.0%
ATCCGAAATTCCTCACTCAA+CGG - chr5_1:22503571-22503590 None:intergenic 40.0%
TTGAGTGAGGAATTTCGGAT+TGG + chr5_1:22503571-22503590 Msa0724210:intron 40.0%
TGAGTGAGGAATTTCGGATT+GGG + chr5_1:22503572-22503591 Msa0724210:intron 40.0%
GTTAAACTATGGTGAGTCAC+AGG + chr5_1:22503790-22503809 Msa0724210:intron 40.0%
AAAGAGTGATGACTACAGTG+GGG - chr5_1:22503835-22503854 None:intergenic 40.0%
CAAAGAGTGATGACTACAGT+GGG - chr5_1:22503836-22503855 None:intergenic 40.0%
TCAAAGAGTGATGACTACAG+TGG - chr5_1:22503837-22503856 None:intergenic 40.0%
ATCACTCTTTGAATTTGGCC+AGG + chr5_1:22503845-22503864 Msa0724210:intron 40.0%
TCACTCTTTGAATTTGGCCA+GGG + chr5_1:22503846-22503865 Msa0724210:intron 40.0%
TATATGCCTGCTTATTCTGC+TGG + chr5_1:22504066-22504085 Msa0724210:intron 40.0%
ATCTCAAAGGACTGACAGAA+AGG + chr5_1:22504127-22504146 Msa0724210:CDS 40.0%
CATGCATGTGTCGTCTATTA+TGG + chr5_1:22504369-22504388 Msa0724210:intron 40.0%
TGCATGTGTCGTCTATTATG+GGG + chr5_1:22504371-22504390 Msa0724210:intron 40.0%
ATTGCTGCATCTACAGTGTT+GGG - chr5_1:22504411-22504430 None:intergenic 40.0%
GCAGGGTTTCGAAAAATTGT+TGG + chr5_1:22504476-22504495 Msa0724210:intron 40.0%
! ATATTTTTCCACCGCAACTG+CGG + chr5_1:22504651-22504670 Msa0724210:intron 40.0%
TAAACGTTCGAATCTGACGA+AGG + chr5_1:22504702-22504721 Msa0724210:intron 40.0%
! CTGTCAAAAGGTATATGGTG+AGG + chr5_1:22504943-22504962 Msa0724210:CDS 40.0%
GTCAATGAAGGTGAAGTCAT+TGG + chr5_1:22505090-22505109 Msa0724210:three_prime_UTR 40.0%
!! AAGGTGAAGTCATTGGTTTG+CGG + chr5_1:22505097-22505116 Msa0724210:three_prime_UTR 40.0%
TCTGAATCATCATCCACACT+TGG - chr5_1:22505210-22505229 None:intergenic 40.0%
TGTGGATGATGATTCAGAGT+TGG + chr5_1:22505212-22505231 Msa0724210:three_prime_UTR 40.0%
GTGGATGATGATTCAGAGTT+GGG + chr5_1:22505213-22505232 Msa0724210:three_prime_UTR 40.0%
!! AAGATGGTGTTGTTCAGTGG+CGG - chr5_1:22498969-22498988 None:intergenic 45.0%
! ACGTCTTTGATCAGAGGTGT+TGG - chr5_1:22499126-22499145 None:intergenic 45.0%
ATAGAAGCAGAAGCGGAATG+AGG + chr5_1:22499405-22499424 Msa0724210:intron 45.0%
ACAAGAACTGCAGGGTGAAT+TGG + chr5_1:22499447-22499466 Msa0724210:intron 45.0%
CTCCGTACCTTCATTGTGTT+GGG + chr5_1:22500052-22500071 Msa0724210:intron 45.0%
CACCCAACACAATGAAGGTA+CGG - chr5_1:22500057-22500076 None:intergenic 45.0%
TCCCACATTGCGTAGAGATA+TGG + chr5_1:22500094-22500113 Msa0724210:intron 45.0%
GCCATATCTCTACGCAATGT+GGG - chr5_1:22500098-22500117 None:intergenic 45.0%
CAAAACCACCTTGTAAGGTG+AGG - chr5_1:22500152-22500171 None:intergenic 45.0%
GTAAAGTATGAGAGGAAGCG+TGG + chr5_1:22500238-22500257 Msa0724210:intron 45.0%
! AGGTTTACGCCCCAAGATTT+TGG + chr5_1:22500483-22500502 Msa0724210:intron 45.0%
AGAGGCCGAGTCAAGAAAAA+AGG + chr5_1:22501140-22501159 Msa0724210:CDS 45.0%
CTCAGAACTTGAAGCAAAGC+TGG + chr5_1:22501173-22501192 Msa0724210:intron 45.0%
GAACTTGAAGCAAAGCTGGA+CGG + chr5_1:22501177-22501196 Msa0724210:intron 45.0%
AACTTGAAGCAAAGCTGGAC+GGG + chr5_1:22501178-22501197 Msa0724210:intron 45.0%
AAAGGTTGTGGTTGGCATAC+TGG + chr5_1:22503532-22503551 Msa0724210:intron 45.0%
CTCCGTTGAGTGAGGAATTT+CGG + chr5_1:22503566-22503585 Msa0724210:intron 45.0%
TGAATTTGGCCAGGGACATT+TGG + chr5_1:22503854-22503873 Msa0724210:intron 45.0%
CATCAATTTACACGGCCTGT+GGG - chr5_1:22504180-22504199 None:intergenic 45.0%
CATTGCTGCATCTACAGTGT+TGG - chr5_1:22504412-22504431 None:intergenic 45.0%
AAGTTCACGAGCACACAAGT+AGG - chr5_1:22504447-22504466 None:intergenic 45.0%
!! TGCTCGTGAACTTGCTGTAA+TGG + chr5_1:22504454-22504473 Msa0724210:intron 45.0%
!! GTGAACTTGCTGTAATGGCA+GGG + chr5_1:22504459-22504478 Msa0724210:intron 45.0%
TGGTCATCGCATAATCCAAG+CGG + chr5_1:22504904-22504923 Msa0724210:intron 45.0%
ATCCAAGCGGGATTGTATGT+AGG + chr5_1:22504917-22504936 Msa0724210:intron 45.0%
TTCCTACATACAATCCCGCT+TGG - chr5_1:22504922-22504941 None:intergenic 45.0%
! ACCTTTGTTTACCCGATGAC+CGG + chr5_1:22505015-22505034 Msa0724210:CDS 45.0%
GTTTGCGGTATGCTCCAAAA+TGG + chr5_1:22505112-22505131 Msa0724210:three_prime_UTR 45.0%
!! GAATATTAAATAAAATAAAA+AGG - chr5_1:22500417-22500436 None:intergenic 5.0%
CCAGACACGTCTTTGATCAG+AGG - chr5_1:22499132-22499151 None:intergenic 50.0%
CCTCTGATCAAAGACGTGTC+TGG + chr5_1:22499129-22499148 Msa0724210:intron 50.0%
CTGATCAAAGACGTGTCTGG+TGG + chr5_1:22499132-22499151 Msa0724210:intron 50.0%
!! GAGCTAAGAAGCACTGACAC+CGG - chr5_1:22499226-22499245 None:intergenic 50.0%
!! CATTTGGGTTGCCTTCACTG+CGG + chr5_1:22500028-22500047 Msa0724210:intron 50.0%
! CCAACACAATGAAGGTACGG+AGG - chr5_1:22500054-22500073 None:intergenic 50.0%
CCTCCGTACCTTCATTGTGT+TGG + chr5_1:22500051-22500070 Msa0724210:intron 50.0%
TTGTGTTGGGTGTCAATGGG+TGG + chr5_1:22500065-22500084 Msa0724210:intron 50.0%
GGCCATATCTCTACGCAATG+TGG - chr5_1:22500099-22500118 None:intergenic 50.0%
ACTTGAAGCAAAGCTGGACG+GGG + chr5_1:22501179-22501198 Msa0724210:intron 50.0%
GCACTGCAATACAACTCCGT+TGG + chr5_1:22502094-22502113 Msa0724210:intron 50.0%
GGTTGGCATACTGGTGCAAA+AGG + chr5_1:22503541-22503560 Msa0724210:intron 50.0%
AAAAGGTCCTCCGTTGAGTG+AGG + chr5_1:22503558-22503577 Msa0724210:intron 50.0%
CGAAATTCCTCACTCAACGG+AGG - chr5_1:22503568-22503587 None:intergenic 50.0%
AGCAAGCCAGCAGAATAAGC+AGG - chr5_1:22504075-22504094 None:intergenic 50.0%
CCATCAATTTACACGGCCTG+TGG - chr5_1:22504181-22504200 None:intergenic 50.0%
CCACAGGCCGTGTAAATTGA+TGG + chr5_1:22504178-22504197 Msa0724210:intron 50.0%
!! CGTGAACTTGCTGTAATGGC+AGG + chr5_1:22504458-22504477 Msa0724210:intron 50.0%
AATTGCAGACACCGCAGTTG+CGG - chr5_1:22504665-22504684 None:intergenic 50.0%
CAACTGCGGTGTCTGCAATT+GGG + chr5_1:22504665-22504684 Msa0724210:intron 50.0%
AACTGCGGTGTCTGCAATTG+GGG + chr5_1:22504666-22504685 Msa0724210:intron 50.0%
! ACTTCTAGGGACACATGCGA+AGG - chr5_1:22504742-22504761 None:intergenic 50.0%
GGTCATCGCATAATCCAAGC+GGG + chr5_1:22504905-22504924 Msa0724210:intron 50.0%
GGTGAGGAGCAACTTAGATG+TGG + chr5_1:22504959-22504978 Msa0724210:CDS 50.0%
! CCTTTGTTTACCCGATGACC+GGG + chr5_1:22505016-22505035 Msa0724210:CDS 50.0%
!! GGTGTTGGTGCTACACTCGT+TGG - chr5_1:22499111-22499130 None:intergenic 55.0%
CAGTGTCCGTGTTCTGTGTC+CGG + chr5_1:22499204-22499223 Msa0724210:intron 55.0%
CTGACACCGGACACAGAACA+CGG - chr5_1:22499213-22499232 None:intergenic 55.0%
ATGCCGCAATCAGGTGGCTA+GGG - chr5_1:22500011-22500030 None:intergenic 55.0%
AATGCCGCAATCAGGTGGCT+AGG - chr5_1:22500012-22500031 None:intergenic 55.0%
AGCCACCTGATTGCGGCATT+TGG + chr5_1:22500012-22500031 Msa0724210:intron 55.0%
GCCACCTGATTGCGGCATTT+GGG + chr5_1:22500013-22500032 Msa0724210:intron 55.0%
ACCCAAATGCCGCAATCAGG+TGG - chr5_1:22500017-22500036 None:intergenic 55.0%
GCAACCCAAATGCCGCAATC+AGG - chr5_1:22500020-22500039 None:intergenic 55.0%
GCAACTGCGGTGTCTGCAAT+TGG + chr5_1:22504664-22504683 Msa0724210:intron 55.0%
CCCGGTCATCGGGTAAACAA+AGG - chr5_1:22505019-22505038 None:intergenic 55.0%
TTAGCCACCAAGAGCTCTCC+CGG - chr5_1:22505037-22505056 None:intergenic 55.0%
CGGACACAGAACACGGACAC+TGG - chr5_1:22499206-22499225 None:intergenic 60.0%
GCAATCAGGTGGCTAGGGGT+GGG - chr5_1:22500006-22500025 None:intergenic 60.0%
CACCCCTAGCCACCTGATTG+CGG + chr5_1:22500005-22500024 Msa0724210:intron 60.0%
TGCCGCAATCAGGTGGCTAG+GGG - chr5_1:22500010-22500029 None:intergenic 60.0%
TGGGCAGCCCTCACCTTACA+AGG + chr5_1:22500141-22500160 Msa0724210:intron 60.0%
GCAGCCCTCACCTTACAAGG+TGG + chr5_1:22500144-22500163 Msa0724210:intron 60.0%
CAAGAGCTCTCCCGGTCATC+GGG - chr5_1:22505029-22505048 None:intergenic 60.0%
CCAAGAGCTCTCCCGGTCAT+CGG - chr5_1:22505030-22505049 None:intergenic 60.0%
ATGACCGGGAGAGCTCTTGG+TGG + chr5_1:22505030-22505049 Msa0724210:CDS 60.0%
CTAGGGGTGGGCCGCAATGA+AGG - chr5_1:22499994-22500013 None:intergenic 65.0%
CGCAATCAGGTGGCTAGGGG+TGG - chr5_1:22500007-22500026 None:intergenic 65.0%
AGGTACGGAGGCCGCAGTGA+AGG - chr5_1:22500042-22500061 None:intergenic 65.0%
TGCAGACACCGCAGTTGCGG+TGG - chr5_1:22504662-22504681 None:intergenic 65.0%
CCGATGACCGGGAGAGCTCT+TGG + chr5_1:22505027-22505046 Msa0724210:CDS 65.0%
GGGGTGGGCCGCAATGAAGG+CGG - chr5_1:22499991-22500010 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 22498798 22505246 22498798 ID=Msa0724210;Name=Msa0724210
chr5_1 mRNA 22498798 22505246 22498798 ID=Msa0724210-mRNA-1;Parent=Msa0724210;Name=Msa0724210-mRNA-1;_AED=0.19;_eAED=0.19;_QI=11|0.75|0.69|1|0.66|0.69|13|185|329
chr5_1 exon 22498798 22498880 22498798 ID=Msa0724210-mRNA-1:exon:8518;Parent=Msa0724210-mRNA-1
chr5_1 exon 22498953 22498997 22498953 ID=Msa0724210-mRNA-1:exon:8519;Parent=Msa0724210-mRNA-1
chr5_1 exon 22499460 22499507 22499460 ID=Msa0724210-mRNA-1:exon:8520;Parent=Msa0724210-mRNA-1
chr5_1 exon 22499594 22499704 22499594 ID=Msa0724210-mRNA-1:exon:8521;Parent=Msa0724210-mRNA-1
chr5_1 exon 22500658 22500832 22500658 ID=Msa0724210-mRNA-1:exon:8522;Parent=Msa0724210-mRNA-1
chr5_1 exon 22500946 22501002 22500946 ID=Msa0724210-mRNA-1:exon:8523;Parent=Msa0724210-mRNA-1
chr5_1 exon 22501103 22501167 22501103 ID=Msa0724210-mRNA-1:exon:8524;Parent=Msa0724210-mRNA-1
chr5_1 exon 22501336 22501401 22501336 ID=Msa0724210-mRNA-1:exon:8525;Parent=Msa0724210-mRNA-1
chr5_1 exon 22501486 22501563 22501486 ID=Msa0724210-mRNA-1:exon:8526;Parent=Msa0724210-mRNA-1
chr5_1 exon 22502355 22502461 22502355 ID=Msa0724210-mRNA-1:exon:8527;Parent=Msa0724210-mRNA-1
chr5_1 exon 22503014 22503019 22503014 ID=Msa0724210-mRNA-1:exon:8528;Parent=Msa0724210-mRNA-1
chr5_1 exon 22504112 22504148 22504112 ID=Msa0724210-mRNA-1:exon:8529;Parent=Msa0724210-mRNA-1
chr5_1 exon 22504939 22505246 22504939 ID=Msa0724210-mRNA-1:exon:8530;Parent=Msa0724210-mRNA-1
chr5_1 five_prime_UTR 22498798 22498808 22498798 ID=Msa0724210-mRNA-1:five_prime_utr;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22498809 22498880 22498809 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22498953 22498997 22498953 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22499460 22499507 22499460 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22499594 22499704 22499594 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22500658 22500832 22500658 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22500946 22501002 22500946 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22501103 22501167 22501103 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22501336 22501401 22501336 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22501486 22501563 22501486 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22502355 22502461 22502355 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22503014 22503019 22503014 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22504112 22504148 22504112 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 CDS 22504939 22505061 22504939 ID=Msa0724210-mRNA-1:cds;Parent=Msa0724210-mRNA-1
chr5_1 three_prime_UTR 22505062 22505246 22505062 ID=Msa0724210-mRNA-1:three_prime_utr;Parent=Msa0724210-mRNA-1
Gene Sequence

>Msa0724210

ATGGAGTTACTGAAATTTTCGAAGTTGAAGCTTCAACTACAATCTCTCATAACCGAAGTTCGAGATCTAAGGGACAGAGAACGTTCCGCCACTGAACAACACCATCTTCTAATCCAGGGTGAATTGGCTTCTGTTAAAGAAGAGAGACAGAAATTGGAGAGAAAGGTGAATTATGTACAGAATGATAATGTGATGCTTGAGAATAAGCAGAAAGAGTTGAAGGGAACATTGAATAGCTTACTTCAGTCCAGGGAAAATTTTGTGATTGCTTACGAGGAATCTACTTCTCATTTGAAACGTTCACTTGAAAACAAAGATAGGATGCTTAGTGTCCTCTCAGAGAAGATAAATTCTCATCTACTATTATTTGATTCTATAGAGAAGGAGGTGTTTTATATCAAGCATATTCTGGATAAAGTCCAGAACATTGTCAAAGATAAAGAAGAAGTTGTGACCAGCTTGAAAAACAAAATGGACCAGGTCTCAGCATTTGAAAAAGAATTTGTTGAACATATCACAGACCTAAGAAACAAACTGGAAAACAAAGAGGCCGAGTCAAGAAAAAAGGATAGATGTCACCTTCAGAAAACTATATTGGCAAAGGATGCAGAGATACATAATTTAATTTCAGACAAAGAGGCTTTACGTAATGAAGTTGGAAGCTTAAGACTCATCTTACAGAGGTTTCAGGGCACTGTTACTAATATGAATGAAGAGGACAAAAAGTTATTCTCATCAATTTTGCAACATAAAGAAGCGAGTGCAACAGATATGAAGATAGACGTTTATCCAAGAAAAAGAGATATGAAGATAGAAGATATTAGGCACAGCTTACAACCAACTATATCTCAAAGGACTGACAGAAAGGAAACTGTCAAAAGGTATATGGTGAGGAGCAACTTAGATGTGGATTTTTCATCTTTTAATGAACGTATGGGATTCGACCTTTGTTTACCCGATGACCGGGAGAGCTCTTGGTGGCTAAAATAA

Protein sequence

>Msa0724210

MELLKFSKLKLQLQSLITEVRDLRDRERSATEQHHLLIQGELASVKEERQKLERKVNYVQNDNVMLENKQKELKGTLNSLLQSRENFVIAYEESTSHLKRSLENKDRMLSVLSEKINSHLLLFDSIEKEVFYIKHILDKVQNIVKDKEEVVTSLKNKMDQVSAFEKEFVEHITDLRNKLENKEAESRKKDRCHLQKTILAKDAEIHNLISDKEALRNEVGSLRLILQRFQGTVTNMNEEDKKLFSSILQHKEASATDMKIDVYPRKRDMKIEDIRHSLQPTISQRTDRKETVKRYMVRSNLDVDFSSFNERMGFDLCLPDDRESSWWLK*