AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178930 MtrunA17_Chr1g0208161 75.439 114 23 1 1 109 1 114 2.05e-47 160
Msa0178930 MtrunA17_Chr1g0208091 91.525 59 5 0 85 143 144 202 1.71e-32 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 48 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTGATTAAACAATTTC+AGG 0.202496 1_4:+66371510 None:intergenic
ATCAAAGCTCTTTGTCGATT+TGG 0.264424 1_4:+66371775 None:intergenic
CTACGGAGTAACTTGGGATT+TGG 0.274751 1_4:+66379032 None:intergenic
GAAGAACCTGGAACTGTTGC+TGG 0.303270 1_4:+66378955 None:intergenic
TCTTGTACTTGCTTACTGTT+AGG 0.352429 1_4:-66371394 Msa0178930:three_prime_UTR
AACTTCCCAGCAACAGTTCC+AGG 0.359708 1_4:-66378961 Msa0178930:intron
TTCAAATAGGAATGCTGGTC+TGG 0.367980 1_4:-66371456 Msa0178930:three_prime_UTR
AAAAGATGAAGAAGCAAAGA+AGG 0.386089 1_4:+66379082 None:intergenic
CGCAACAAATGGAGTATTTG+AGG 0.395015 1_4:-66371867 Msa0178930:three_prime_UTR
AGTTTGTGAGTTAGAATCTC+TGG 0.411120 1_4:+66378980 None:intergenic
TGGTTAACTGAAGTCTAGTT+AGG 0.431882 1_4:-66371906 Msa0178930:three_prime_UTR
TACATTACTACGGAGTAACT+TGG 0.441848 1_4:+66379025 None:intergenic
ACTTCTTGTAGAACTAGATT+CGG 0.453085 1_4:-66379059 Msa0178930:CDS
ACAGATGGATGCGCAACAAA+TGG 0.457805 1_4:-66371878 Msa0178930:three_prime_UTR
GTTTAGAATTTCGTGAATGT+TGG 0.461757 1_4:+66379132 None:intergenic
CAGGATTTGACATCAGAATC+TGG 0.464997 1_4:-66378631 Msa0178930:CDS
TCACTAATCATGAGTTAAAA+CGG 0.477999 1_4:+66371817 None:intergenic
GTTACTCCGTAGTAATGTAT+TGG 0.484163 1_4:-66379021 Msa0178930:CDS
TTTAGGATGGTAGTATGGCA+TGG 0.510650 1_4:-66371579 Msa0178930:three_prime_UTR
CAAAGAAAAGAAAGTGCAGT+AGG 0.516683 1_4:-66372572 Msa0178930:intron
ACACAATATCTCACCACCTC+AGG 0.524280 1_4:-66371420 Msa0178930:three_prime_UTR
TCTTCTCATCAATTCGATCC+TGG 0.524568 1_4:+66372677 None:intergenic
TTGTATTTGCTGTTATGTGT+TGG 0.524946 1_4:-66371345 None:intergenic
CAGAAGAGGGTGGAAAAGAA+AGG 0.526038 1_4:-66371638 Msa0178930:three_prime_UTR
CACAGTATCAAAAGATTCGC+AGG 0.529807 1_4:-66372627 Msa0178930:CDS
TCATATAAAGCATCTTCCAT+TGG 0.530125 1_4:+66371717 None:intergenic
TTTGAAATTCAGTGTGCAGA+TGG 0.530237 1_4:-66371926 Msa0178930:intron
AAAGATGAAGAAGCAAAGAA+GGG 0.538832 1_4:+66379083 None:intergenic
GAGAAGATTCATGTGGTACA+TGG 0.548698 1_4:-66372661 Msa0178930:CDS
AAGAACCTGGAACTGTTGCT+GGG 0.550421 1_4:+66378956 None:intergenic
ACTCATGAGAACTTGCACAT+TGG 0.550565 1_4:-66371610 Msa0178930:three_prime_UTR
CTGGTACTTGTCATATGCCA+CGG 0.562166 1_4:+66372696 None:intergenic
CGTGGCATATGACAAGTACC+AGG 0.566409 1_4:-66372695 Msa0178930:CDS
ACATTACTACGGAGTAACTT+GGG 0.575571 1_4:+66379026 None:intergenic
CCAGAGTGAACCTAAAACAA+GGG 0.580786 1_4:+66371671 None:intergenic
CTGGATTAGATTACCAGAAG+AGG 0.584920 1_4:-66371652 Msa0178930:three_prime_UTR
TCTAGTTAGGAGCATACAGA+TGG 0.588325 1_4:-66371893 Msa0178930:three_prime_UTR
TCTTAGCTTGTCTCTTCCCG+TGG 0.595833 1_4:-66372713 Msa0178930:CDS
TGGTACTTGTCATATGCCAC+GGG 0.597209 1_4:+66372697 None:intergenic
TCCAGAGTGAACCTAAAACA+AGG 0.605162 1_4:+66371670 None:intergenic
AGAAGATTCATGTGGTACAT+GGG 0.608693 1_4:-66372660 Msa0178930:CDS
TGGATTAGATTACCAGAAGA+GGG 0.618387 1_4:-66371651 Msa0178930:three_prime_UTR
AGCAAGTACAAGATAACCTG+AGG 0.663997 1_4:+66371404 None:intergenic
CGCGTGCCAATACATTACTA+CGG 0.664194 1_4:+66379015 None:intergenic
ATTAGATTACCAGAAGAGGG+TGG 0.667915 1_4:-66371648 Msa0178930:three_prime_UTR
AAGTACAAGATAACCTGAGG+TGG 0.668444 1_4:+66371407 None:intergenic
AATTGATGAGAAGATTCATG+TGG 0.715992 1_4:-66372668 Msa0178930:CDS
AAAATTTGCAGTATACACAG+CGG 0.778070 1_4:+66371485 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTACAAGAAAAAAA+TGG + chr1_4:66372071-66372090 None:intergenic 10.0%
!! ATATTTGCATATTAAAAAAA+TGG + chr1_4:66372101-66372120 None:intergenic 10.0%
!!! AATCTTTTTCATTTTTATAA+AGG + chr1_4:66372714-66372733 None:intergenic 10.0%
!!! CCTTATTTATTAATTTTATT+AGG + chr1_4:66373425-66373444 None:intergenic 10.0%
!! CCTAATAAAATTAATAAATA+AGG - chr1_4:66373422-66373441 Msa0178930:intron 10.0%
!! TATTTGATTCAAAAAAAAAA+AGG - chr1_4:66373919-66373938 Msa0178930:intron 10.0%
!! TATTTGATTCAAAAAAAAAA+AGG - chr1_4:66373919-66373938 Msa0178930:intron 10.0%
!! AAAATTAATAAATAAGGATA+AGG + chr1_4:66373428-66373447 None:intergenic 10.0%
!! CTTAACAAAATTAATAAATA+AGG + chr1_4:66375088-66375107 None:intergenic 10.0%
!!! TAATTTTGCTAATTTAATAA+CGG - chr1_4:66375504-66375523 Msa0178930:intron 10.0%
!! ATATATATAAATAACTAGTT+TGG - chr1_4:66376192-66376211 Msa0178930:intron 10.0%
!!! GGTTAAATTTAAAATAATAA+AGG + chr1_4:66376784-66376803 None:intergenic 10.0%
!!! AATTTTTTCAAAAAAAAAGT+TGG + chr1_4:66376805-66376824 None:intergenic 10.0%
!!! AAATTTTTACTTTTTCAAAT+AGG - chr1_4:66379048-66379067 Msa0178930:CDS 10.0%
!! TATTTCAATAAAAATGTTAG+TGG - chr1_4:66372492-66372511 Msa0178930:intron 15.0%
!!! TTTTTAAAAATTGTTTTGCA+AGG + chr1_4:66372566-66372585 None:intergenic 15.0%
!!! TTTTTGTTTCTTTTGTTTTT+AGG - chr1_4:66372803-66372822 Msa0178930:intron 15.0%
!!! TTTTGTTTCTTTTGTTTTTA+GGG - chr1_4:66372804-66372823 Msa0178930:intron 15.0%
!! AAATAAATCAAATTATTACG+TGG + chr1_4:66372863-66372882 None:intergenic 15.0%
!! ACTATATTTATAAACAATAG+AGG + chr1_4:66373115-66373134 None:intergenic 15.0%
!! TTAATAAATAAGGATAAATG+AGG - chr1_4:66373432-66373451 Msa0178930:intron 15.0%
!! TATTTGAATAAAAAAAAAGG+AGG - chr1_4:66373556-66373575 Msa0178930:intron 15.0%
!!! ATTTGTTAGGTTAAAAAATA+AGG - chr1_4:66373590-66373609 Msa0178930:intron 15.0%
!! ATTTGCTTCATAAAAAAAAA+AGG - chr1_4:66373808-66373827 Msa0178930:intron 15.0%
!!! ATTTGTTAGGTTAAAAAATA+AGG - chr1_4:66373590-66373609 Msa0178930:intron 15.0%
!! TTGCTTCATAAAAAAAAAAA+AGG - chr1_4:66374170-66374189 Msa0178930:intron 15.0%
!!! ATTTGTTAGGTTAAAAAATA+AGG - chr1_4:66373590-66373609 Msa0178930:intron 15.0%
!! TATTTGCTTCATAAAAAAAA+AGG - chr1_4:66373807-66373826 Msa0178930:intron 15.0%
!! ATTTGATTAAAAAAAAAAGG+AGG - chr1_4:66374645-66374664 Msa0178930:intron 15.0%
!!! ATTTGTTAGGTTAAAAAATA+AGG - chr1_4:66373590-66373609 Msa0178930:intron 15.0%
!!! TATCATGTTTTCTATAATTT+TGG + chr1_4:66374715-66374734 None:intergenic 15.0%
!! CAAAATATTGCAAAAAAAAA+AGG + chr1_4:66375231-66375250 None:intergenic 15.0%
!! GAAAATATTGTCAAAAAAAA+AGG + chr1_4:66375298-66375317 None:intergenic 15.0%
!! TCAAACAAAAATCATTAATT+AGG - chr1_4:66375420-66375439 Msa0178930:intron 15.0%
!!! AATTTTGCTAATTTAATAAC+GGG - chr1_4:66375505-66375524 Msa0178930:intron 15.0%
!! ACTACTATATTATATCTAAA+AGG - chr1_4:66375866-66375885 Msa0178930:intron 15.0%
!!! TTATTTTAGTTAACATTAAG+TGG - chr1_4:66375971-66375990 Msa0178930:intron 15.0%
!!! TATTTTAGTTAACATTAAGT+GGG - chr1_4:66375972-66375991 Msa0178930:intron 15.0%
!! TTTATATATATCTAATCCTA+AGG + chr1_4:66376183-66376202 None:intergenic 15.0%
!! AACAATATAGTAAAAATTGT+GGG + chr1_4:66377212-66377231 None:intergenic 15.0%
!! AAACAATATAGTAAAAATTG+TGG + chr1_4:66377213-66377232 None:intergenic 15.0%
!!! TGGTTTTTATTCTAATAATT+TGG - chr1_4:66378504-66378523 Msa0178930:intron 15.0%
!!! TTTTTTTTTTTTATGCTGCT+TGG - chr1_4:66371655-66371674 Msa0178930:three_prime_UTR 20.0%
!! TAGAGTCTAGTTAATAAATA+AGG + chr1_4:66372165-66372184 None:intergenic 20.0%
!! AAATGGATATGTAATCTTAA+AGG + chr1_4:66372460-66372479 None:intergenic 20.0%
!!! AAATATAGTTGCTTCTAAAA+TGG + chr1_4:66372477-66372496 None:intergenic 20.0%
!! AAAAATGAAAAAGATTCGTT+AGG - chr1_4:66372718-66372737 Msa0178930:CDS 20.0%
!!! ATGTGATAGTTTTATTTTCA+CGG - chr1_4:66372831-66372850 Msa0178930:intron 20.0%
!! GTAATAAAAAAACGAAAAGA+CGG + chr1_4:66372948-66372967 None:intergenic 20.0%
!! GTAACAAACAAAATTGTTTA+AGG - chr1_4:66373057-66373076 Msa0178930:intron 20.0%
!!! TATAAACAATAGAGGATTTT+AGG + chr1_4:66373107-66373126 None:intergenic 20.0%
!!! AGGAATTTGTTAGTTTAAAT+TGG - chr1_4:66373306-66373325 Msa0178930:intron 20.0%
!!! AATTTTAGAGGGAAATTATT+AGG - chr1_4:66373384-66373403 Msa0178930:intron 20.0%
!!! CAAATATTTTCTACACATTT+AGG + chr1_4:66373542-66373561 None:intergenic 20.0%
!!! CAAATATTTTCTACACTTTT+AGG + chr1_4:66373905-66373924 None:intergenic 20.0%
!! TTGATTCAAAAAAAAAAAGG+AGG - chr1_4:66373922-66373941 Msa0178930:intron 20.0%
!! TAGGTTAAAAAATAAGGATT+CGG - chr1_4:66373596-66373615 Msa0178930:intron 20.0%
!!! TATCAAGTTTGCTATAATTT+TGG + chr1_4:66373992-66374011 None:intergenic 20.0%
!! ATAAAAAAAAAAAAGGCAAG+AGG - chr1_4:66374177-66374196 Msa0178930:intron 20.0%
!! TTGATTCAAAAAAAAAAAGG+TGG - chr1_4:66373922-66373941 Msa0178930:intron 20.0%
!! TAGGTTAAAAAATAAGGATT+CGG - chr1_4:66373596-66373615 Msa0178930:intron 20.0%
!!! TATCAAGTTTGCTATAATTT+TGG + chr1_4:66373992-66374011 None:intergenic 20.0%
!! TAATTAAGTAAGATGATCAA+TGG - chr1_4:66374392-66374411 Msa0178930:intron 20.0%
!!! CAAATATTTTCTACACTTTT+AGG + chr1_4:66373905-66373924 None:intergenic 20.0%
!! TAGGTTAAAAAATAAGGATT+CGG - chr1_4:66373596-66373615 Msa0178930:intron 20.0%
!! GAAAACATGATAACAAAATT+CGG - chr1_4:66374723-66374742 Msa0178930:intron 20.0%
!! TAATTAAGTAAGATGATCAA+TGG - chr1_4:66374392-66374411 Msa0178930:intron 20.0%
!!! AAATTTAGAGCCAAAATTTT+AGG + chr1_4:66374975-66374994 None:intergenic 20.0%
!!! TTTGCTTTGAAAAATATTCA+CGG + chr1_4:66375033-66375052 None:intergenic 20.0%
!! AATAAATAAGGATAAGGATA+AGG + chr1_4:66375076-66375095 None:intergenic 20.0%
!!! TTTTTTAGATGGAATTTGTT+AGG + chr1_4:66373501-66373520 None:intergenic 20.0%
!! TAAATCAATATATGCATAAG+CGG + chr1_4:66375618-66375637 None:intergenic 20.0%
!!! TATTTACTAGTTTATTTACC+CGG + chr1_4:66375778-66375797 None:intergenic 20.0%
!!! ATTTTTTCACTTATTTGTGA+TGG + chr1_4:66376324-66376343 None:intergenic 20.0%
!!! ATTTCTACACTTTTGTTATT+TGG - chr1_4:66376822-66376841 Msa0178930:intron 20.0%
!! CATTACAACATTATGTATAT+TGG + chr1_4:66377382-66377401 None:intergenic 20.0%
!!! TACATAATGTTGTAATGTTT+TGG - chr1_4:66377385-66377404 Msa0178930:intron 20.0%
!!! TACATAATATTTTGTTCCAA+CGG + chr1_4:66378236-66378255 None:intergenic 20.0%
!! AAATCATAGAAAAGTTTAAG+AGG - chr1_4:66378335-66378354 Msa0178930:intron 20.0%
!!! ATTACTGATTAAACAATTTC+AGG + chr1_4:66379010-66379029 None:intergenic 20.0%
! AAGAAGCAGAAGAATTAAAA+GGG + chr1_4:66371617-66371636 None:intergenic 25.0%
! AAAGAAGCAGAAGAATTAAA+AGG + chr1_4:66371618-66371637 None:intergenic 25.0%
! NNNNNATCAACTGAACATAG+AGG + chr1_4:66371922-66371941 None:intergenic 25.0%
! AAACAAAATAAACCAGTCAT+AGG - chr1_4:66372127-66372146 Msa0178930:intron 25.0%
! ACAATAAAAATGAGTGTTAG+TGG - chr1_4:66372422-66372441 Msa0178930:intron 25.0%
!!! TGTGATAGTTTTATTTTCAC+GGG - chr1_4:66372832-66372851 Msa0178930:intron 25.0%
!!! GTATATATCTATTGTTTCTG+TGG + chr1_4:66373212-66373231 None:intergenic 25.0%
!! CATTTTAGATGGAATTTCTT+AGG - chr1_4:66373336-66373355 Msa0178930:intron 25.0%
!! AATCTAATGCAGAATTTTAG+AGG - chr1_4:66373372-66373391 Msa0178930:intron 25.0%
!! ATCTAATGCAGAATTTTAGA+GGG - chr1_4:66373373-66373392 Msa0178930:intron 25.0%
! AGGATAAATGAGGATAAAAA+AGG - chr1_4:66373442-66373461 Msa0178930:intron 25.0%
! GAATAAAAAAAAAGGAGGAT+AGG - chr1_4:66373561-66373580 Msa0178930:intron 25.0%
! TTAAAAAATAAGGATTCGAC+TGG - chr1_4:66373600-66373619 Msa0178930:intron 25.0%
!!! CATCAAGTTTGCTATAATTT+TGG + chr1_4:66373626-66373645 None:intergenic 25.0%
!! GGATATGAATGAAATTTGTT+AGG - chr1_4:66373943-66373962 Msa0178930:intron 25.0%
!! GCAAACTTGATAACAAAATT+CGG - chr1_4:66374000-66374019 Msa0178930:intron 25.0%
!! CAAATATTCTCTACACTTTT+AGG + chr1_4:66374267-66374286 None:intergenic 25.0%
!! GGATATGAATGAAATTTGTT+AGG - chr1_4:66373943-66373962 Msa0178930:intron 25.0%
!! GCAAACTTGATAACAAAATT+TGG - chr1_4:66374000-66374019 Msa0178930:intron 25.0%
! TTCATAAAAAAAAAGGCAAG+AGG - chr1_4:66374540-66374559 Msa0178930:intron 25.0%
!! GGATATGAATGAAATTTGTT+AGG - chr1_4:66373943-66373962 Msa0178930:intron 25.0%
! TGTTGCAAACATAATAAGAA+GGG + chr1_4:66374945-66374964 None:intergenic 25.0%
! TTGTTGCAAACATAATAAGA+AGG + chr1_4:66374946-66374965 None:intergenic 25.0%
!! ACAACTCTATCCTAAAATTT+TGG - chr1_4:66374962-66374981 Msa0178930:intron 25.0%
!!! TCAATGGTCAATTTTATTTG+CGG - chr1_4:66375696-66375715 Msa0178930:intron 25.0%
!! ATGCTTAAGCCTTAAAATTT+TGG - chr1_4:66376348-66376367 Msa0178930:intron 25.0%
!! CATCTTCATCCAAAATTTTA+AGG + chr1_4:66376360-66376379 None:intergenic 25.0%
! CAAACAAATCATCATAATGT+TGG + chr1_4:66376681-66376700 None:intergenic 25.0%
! TAGAAAAAGAAAGATGGAAA+AGG + chr1_4:66377001-66377020 None:intergenic 25.0%
! ACAAACTAGAAAAAGAAAGA+TGG + chr1_4:66377007-66377026 None:intergenic 25.0%
! CAAAATATGCTAGAAAACAT+GGG + chr1_4:66377088-66377107 None:intergenic 25.0%
! ACAAAATATGCTAGAAAACA+TGG + chr1_4:66377089-66377108 None:intergenic 25.0%
! TATTTATCAACACCTATTCT+TGG + chr1_4:66377345-66377364 None:intergenic 25.0%
! AAAGATAATAGTAATCGTGA+AGG + chr1_4:66377510-66377529 None:intergenic 25.0%
! ATTTCTGTAATGATCATTTC+AGG - chr1_4:66377775-66377794 Msa0178930:intron 25.0%
!! GAGATTGTATTTTCATTCTT+AGG - chr1_4:66378546-66378565 Msa0178930:intron 25.0%
!!! TTGAGGTTTTTTCATTTTCT+TGG - chr1_4:66378667-66378686 Msa0178930:intron 25.0%
!!! TGAGGTTTTTTCATTTTCTT+GGG - chr1_4:66378668-66378687 Msa0178930:intron 25.0%
! TCACTAATCATGAGTTAAAA+CGG + chr1_4:66378703-66378722 None:intergenic 25.0%
!!! TTTTTGGTTCAATTGGATTT+TGG - chr1_4:66378961-66378980 Msa0178930:intron 25.0%
! GTTTAGAATTTCGTGAATGT+TGG + chr1_4:66371388-66371407 None:intergenic 30.0%
AAAGATGAAGAAGCAAAGAA+GGG + chr1_4:66371437-66371456 None:intergenic 30.0%
AAAAGATGAAGAAGCAAAGA+AGG + chr1_4:66371438-66371457 None:intergenic 30.0%
ACTTCTTGTAGAACTAGATT+CGG - chr1_4:66371458-66371477 Msa0178930:three_prime_UTR 30.0%
! CTAACCACTATCAAGTTTTA+AGG - chr1_4:66371588-66371607 Msa0178930:three_prime_UTR 30.0%
CTAGTAAGAATACAAGATCA+AGG - chr1_4:66371763-66371782 Msa0178930:three_prime_UTR 30.0%
! CAAGATCAAGGAGTTAATTT+TGG - chr1_4:66371775-66371794 Msa0178930:three_prime_UTR 30.0%
CTTTAGTACTGCTATTACAA+AGG - chr1_4:66371820-66371839 Msa0178930:three_prime_UTR 30.0%
!! AATTTGCTACTGAAATGCTA+AGG - chr1_4:66371848-66371867 Msa0178930:three_prime_UTR 30.0%
! ATTTGCTACTGAAATGCTAA+GGG - chr1_4:66371849-66371868 Msa0178930:three_prime_UTR 30.0%
! AAATGCTAAGGGGTTAATTT+TGG - chr1_4:66371860-66371879 Msa0178930:three_prime_UTR 30.0%
TGCATCAACAAAAATGAACA+TGG - chr1_4:66372347-66372366 Msa0178930:intron 30.0%
TAAAAATGTTAGTGGTCTAG+TGG - chr1_4:66372500-66372519 Msa0178930:intron 30.0%
! TAGGGTTAATTAAGGTTGAT+TGG - chr1_4:66372617-66372636 Msa0178930:CDS 30.0%
!!! TGTTTCTTTTGTTTTTAGGG+AGG - chr1_4:66372807-66372826 Msa0178930:intron 30.0%
ATTTACATTATGTCAACGTG+TGG - chr1_4:66372902-66372921 Msa0178930:intron 30.0%
TATACAAACGATGACACAAT+AGG - chr1_4:66373227-66373246 Msa0178930:intron 30.0%
! GGATAAAAAAGGCATGAAAT+TGG - chr1_4:66373453-66373472 Msa0178930:intron 30.0%
! TAAAAAAGGCATGAAATTGG+TGG - chr1_4:66373456-66373475 Msa0178930:intron 30.0%
! AAAAAAGGCATGAAATTGGT+GGG - chr1_4:66373457-66373476 Msa0178930:intron 30.0%
! GGATAGGAATGAAATTTGTT+AGG - chr1_4:66373577-66373596 Msa0178930:intron 30.0%
! GCAAACTTGATGACAAAATT+CGG - chr1_4:66373634-66373653 Msa0178930:intron 30.0%
GCATTAAGTATGATGATCAA+TGG - chr1_4:66373660-66373679 Msa0178930:intron 30.0%
! ATTTAGGCACCATTCAATTT+TGG + chr1_4:66373686-66373705 None:intergenic 30.0%
GAAAATGTGGGGAAATATTA+GGG - chr1_4:66373738-66373757 Msa0178930:intron 30.0%
! GGTTAAGCTTTAGTAAGTTA+GGG - chr1_4:66373777-66373796 Msa0178930:intron 30.0%
AAAAAAAAAGGCAAGACGAT+AGG - chr1_4:66373820-66373839 Msa0178930:intron 30.0%
CAAGACGATAGGAATAAAAT+TGG - chr1_4:66373831-66373850 Msa0178930:intron 30.0%
TTAAAAAATAAGGATTCGGC+TGG - chr1_4:66373966-66373985 Msa0178930:intron 30.0%
GCATTAAGTAAGATGATCAA+TGG - chr1_4:66374026-66374045 Msa0178930:intron 30.0%
GATCAATGGCTAAAATTGAT+TGG - chr1_4:66374040-66374059 Msa0178930:intron 30.0%
AAAAATGGGGGGAAAATATT+AGG - chr1_4:66374105-66374124 Msa0178930:intron 30.0%
AAAATGGGGGGAAAATATTA+GGG - chr1_4:66374106-66374125 Msa0178930:intron 30.0%
AAAAAAAAAGGCAAGAGGAT+AGG - chr1_4:66374182-66374201 Msa0178930:intron 30.0%
CAAGAGGATAGGAATAAAAT+TGG - chr1_4:66374193-66374212 Msa0178930:intron 30.0%
!!! GTACGATGCATTTTTTTAGA+TGG - chr1_4:66374215-66374234 Msa0178930:intron 30.0%
TTAAAAAATAAGGATTCGGC+TGG - chr1_4:66373966-66373985 Msa0178930:intron 30.0%
GATCAATGGCTAAAATTGAA+TGG - chr1_4:66374406-66374425 Msa0178930:intron 30.0%
AAAAAAGTGGAGGGAAAAAT+GGG - chr1_4:66374457-66374476 Msa0178930:intron 30.0%
AAAAATGGGGGGAAAATATT+AGG - chr1_4:66374105-66374124 Msa0178930:intron 30.0%
AAAATGGGGGGAAAATATTA+GGG - chr1_4:66374106-66374125 Msa0178930:intron 30.0%
! AGGGTTAAGCTTTAGTAATT+AGG - chr1_4:66374143-66374162 Msa0178930:intron 30.0%
AAAAAAAAAGGCAAGAGGAT+AGG - chr1_4:66374182-66374201 Msa0178930:intron 30.0%
CAAGAGGATAGGAATAAAAT+TGG - chr1_4:66374193-66374212 Msa0178930:intron 30.0%
TTAAAAAATAAGGATTCGGC+TGG - chr1_4:66373966-66373985 Msa0178930:intron 30.0%
GATCAATGGCTAAAATTGAA+TGG - chr1_4:66374406-66374425 Msa0178930:intron 30.0%
ATTAGTGGAGGGAAAAAATT+AGG + chr1_4:66374922-66374941 None:intergenic 30.0%
ACATAATAAGAAGGGATTAG+TGG + chr1_4:66374937-66374956 None:intergenic 30.0%
CAAACGAGAGGAAAAATATT+AGG + chr1_4:66375126-66375145 None:intergenic 30.0%
!!! TGCGATGCATTTTTTTTAGA+TGG + chr1_4:66375185-66375204 None:intergenic 30.0%
AAAAAAAAAGGCAAGAGGAT+AGG + chr1_4:66374182-66374201 None:intergenic 30.0%
TTGCAAAAAAAAAAGGCAAG+AGG + chr1_4:66375224-66375243 None:intergenic 30.0%
! TATATCACACGTTTTCACTT+TGG - chr1_4:66375383-66375402 Msa0178930:intron 30.0%
AATCAAGGATGAGTGAAATT+CGG + chr1_4:66375734-66375753 None:intergenic 30.0%
AACATTAAGTGGGAAATATC+TGG - chr1_4:66375982-66376001 Msa0178930:intron 30.0%
ACATTAAGTGGGAAATATCT+GGG - chr1_4:66375983-66376002 Msa0178930:intron 30.0%
! AAATTTTGGATGAAGATGTG+AGG - chr1_4:66376362-66376381 Msa0178930:intron 30.0%
TACCTAATGTCTTAAGACTT+TGG - chr1_4:66376570-66376589 Msa0178930:intron 30.0%
ACCTAATGTCTTAAGACTTT+GGG - chr1_4:66376571-66376590 Msa0178930:intron 30.0%
ATGTGATATCAATCTCACTT+GGG - chr1_4:66376599-66376618 Msa0178930:intron 30.0%
CATAATGTTGGAACTTTCAT+GGG + chr1_4:66376669-66376688 None:intergenic 30.0%
TCATAATGTTGGAACTTTCA+TGG + chr1_4:66376670-66376689 None:intergenic 30.0%
!!! TCTACACTTTTGTTATTTGG+TGG - chr1_4:66376825-66376844 Msa0178930:intron 30.0%
!!! CTACACTTTTGTTATTTGGT+GGG - chr1_4:66376826-66376845 Msa0178930:intron 30.0%
!! TTTCTAGCATATTTTGTCTG+TGG - chr1_4:66377092-66377111 Msa0178930:intron 30.0%
TTTCTTCATCTCACCTTATT+TGG - chr1_4:66377230-66377249 Msa0178930:intron 30.0%
ACAGAGAGTCTCAAATTTAA+AGG - chr1_4:66377274-66377293 Msa0178930:intron 30.0%
!! TAATGTTTTGGATGATGATC+TGG - chr1_4:66377397-66377416 Msa0178930:intron 30.0%
TACATATGTAGATCAAAGTC+AGG + chr1_4:66377680-66377699 None:intergenic 30.0%
AATTGATGAGAAGATTCATG+TGG - chr1_4:66377849-66377868 Msa0178930:intron 30.0%
! TTTTCTTTGCTTGAACGATT+TGG + chr1_4:66377934-66377953 None:intergenic 30.0%
CTAAAATAAGATTCCGTAGA+TGG + chr1_4:66378102-66378121 None:intergenic 30.0%
GTGTGTTTATGGGATATAAA+CGG - chr1_4:66378376-66378395 Msa0178930:intron 30.0%
GTGCATATTTATGTCTACTT+TGG - chr1_4:66378400-66378419 Msa0178930:intron 30.0%
! ATGTCTACTTTGGATTTTTC+TGG - chr1_4:66378410-66378429 Msa0178930:intron 30.0%
CATTAAAGGTAACTGGAAAT+TGG + chr1_4:66378454-66378473 None:intergenic 30.0%
TTGGTATCATTAAAGGTAAC+TGG + chr1_4:66378461-66378480 None:intergenic 30.0%
GTTGCATTTGGTATCATTAA+AGG + chr1_4:66378468-66378487 None:intergenic 30.0%
TATAGAACATCTGTTGCATT+TGG + chr1_4:66378480-66378499 None:intergenic 30.0%
CAACAGATGTTCTATATAGA+TGG - chr1_4:66378484-66378503 Msa0178930:intron 30.0%
! TCATATAAAGCATCTTCCAT+TGG + chr1_4:66378803-66378822 None:intergenic 30.0%
!!! GAAATAGATACCCTTGTTTT+AGG - chr1_4:66378836-66378855 Msa0178930:intron 30.0%
!!! ATTGGTTTGCTTTTTTAGGA+TGG - chr1_4:66378925-66378944 Msa0178930:intron 30.0%
AAAATTTGCAGTATACACAG+CGG + chr1_4:66379035-66379054 None:intergenic 30.0%
!!! ACTTTTTCAAATAGGAATGC+TGG - chr1_4:66379056-66379075 Msa0178930:CDS 30.0%
ACATTACTACGGAGTAACTT+GGG + chr1_4:66371494-66371513 None:intergenic 35.0%
TACATTACTACGGAGTAACT+TGG + chr1_4:66371495-66371514 None:intergenic 35.0%
GTTACTCCGTAGTAATGTAT+TGG - chr1_4:66371496-66371515 Msa0178930:three_prime_UTR 35.0%
AGTTTGTGAGTTAGAATCTC+TGG + chr1_4:66371540-66371559 None:intergenic 35.0%
GCAACCTTAAAACTTGATAG+TGG + chr1_4:66371595-66371614 None:intergenic 35.0%
TTGGCATGTTATGGCTTAAA+GGG - chr1_4:66371674-66371693 Msa0178930:three_prime_UTR 35.0%
TTTGCTACTGAAATGCTAAG+GGG - chr1_4:66371850-66371869 Msa0178930:three_prime_UTR 35.0%
!! AAGGGGTTAATTTTGGTAAC+AGG - chr1_4:66371867-66371886 Msa0178930:three_prime_UTR 35.0%
!! AAAGCTCTAAGGTGTTGTTA+TGG - chr1_4:66372525-66372544 Msa0178930:intron 35.0%
!! AAGCTCTAAGGTGTTGTTAT+GGG - chr1_4:66372526-66372545 Msa0178930:intron 35.0%
TATATTTAGACCCGCCAAAA+AGG - chr1_4:66372587-66372606 Msa0178930:CDS 35.0%
ATATTTAGACCCGCCAAAAA+GGG - chr1_4:66372588-66372607 Msa0178930:CDS 35.0%
GAATAAAAAGCTTATCAGCG+AGG - chr1_4:66373254-66373273 Msa0178930:intron 35.0%
TATCAGCGAGGAGAAATATT+AGG - chr1_4:66373266-66373285 Msa0178930:intron 35.0%
ATCAGCGAGGAGAAATATTA+GGG - chr1_4:66373267-66373286 Msa0178930:intron 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG - chr1_4:66373490-66373509 Msa0178930:intron 35.0%
GATCAATGGCCAAAATTGAA+TGG - chr1_4:66373674-66373693 Msa0178930:intron 35.0%
GGAAAATGTGGGGAAATATT+AGG - chr1_4:66373737-66373756 Msa0178930:intron 35.0%
! GGGTTAAGCTTTAGTAAGTT+AGG - chr1_4:66373776-66373795 Msa0178930:intron 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG - chr1_4:66373490-66373509 Msa0178930:intron 35.0%
! ACTTGATAACAAAATTCGGC+TGG - chr1_4:66374004-66374023 Msa0178930:intron 35.0%
AGAAAAGTGGAGGGAAAAAT+GGG - chr1_4:66374091-66374110 Msa0178930:intron 35.0%
CAAAAAAGTGGAGGGAAAAA+TGG - chr1_4:66374456-66374475 Msa0178930:intron 35.0%
AAAAAGTGGAGGGAAAAATG+GGG - chr1_4:66374458-66374477 Msa0178930:intron 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG - chr1_4:66373490-66373509 Msa0178930:intron 35.0%
ACATGATAACAAAATTCGGC+TGG - chr1_4:66374727-66374746 Msa0178930:intron 35.0%
AAGAATGGGGGGAAAATATT+AGG - chr1_4:66374832-66374851 Msa0178930:intron 35.0%
AGAATGGGGGGAAAATATTA+GGG - chr1_4:66374833-66374852 Msa0178930:intron 35.0%
! AATAAGAAGGGATTAGTGGA+GGG + chr1_4:66374933-66374952 None:intergenic 35.0%
! TAATAAGAAGGGATTAGTGG+AGG + chr1_4:66374934-66374953 None:intergenic 35.0%
CAAGAGGATAGGAATGAAAT+TGG + chr1_4:66375208-66375227 None:intergenic 35.0%
CCGAGTTTGCATGAAAATTA+GGG + chr1_4:66375353-66375372 None:intergenic 35.0%
! CCCTAATTTTCATGCAAACT+CGG - chr1_4:66375350-66375369 Msa0178930:intron 35.0%
! TTTTAAATACCCAGACACGT+AGG + chr1_4:66375539-66375558 None:intergenic 35.0%
CATAAGCGGATGAAATTAAC+TGG + chr1_4:66375604-66375623 None:intergenic 35.0%
AAATTGACCATTGACCAGTA+CGG + chr1_4:66375690-66375709 None:intergenic 35.0%
CCTTGATTATATGTCTAACC+CGG - chr1_4:66375746-66375765 Msa0178930:intron 35.0%
CTTGATTATATGTCTAACCC+GGG - chr1_4:66375747-66375766 Msa0178930:intron 35.0%
!! GTAGTGATGATGCTCTTTTT+GGG + chr1_4:66375851-66375870 None:intergenic 35.0%
!! AGTAGTGATGATGCTCTTTT+TGG + chr1_4:66375852-66375871 None:intergenic 35.0%
TGGATACTTCTGATACGTAT+CGG - chr1_4:66376065-66376084 Msa0178930:intron 35.0%
ATATCCCGATTCAACATTGT+GGG - chr1_4:66376467-66376486 Msa0178930:intron 35.0%
CCTAATGTCTTAAGACTTTG+GGG - chr1_4:66376572-66376591 Msa0178930:intron 35.0%
CTAATGTCTTAAGACTTTGG+GGG - chr1_4:66376573-66376592 Msa0178930:intron 35.0%
TAATGTCTTAAGACTTTGGG+GGG - chr1_4:66376574-66376593 Msa0178930:intron 35.0%
GATGTGATATCAATCTCACT+TGG - chr1_4:66376598-66376617 Msa0178930:intron 35.0%
GAGCATGAGAGAAATGATAA+GGG + chr1_4:66376973-66376992 None:intergenic 35.0%
TGAGCATGAGAGAAATGATA+AGG + chr1_4:66376974-66376993 None:intergenic 35.0%
!! TAGAAAACATGGGTTAGTAG+TGG + chr1_4:66377078-66377097 None:intergenic 35.0%
TCTGGTGAGATAGTCAAATA+AGG + chr1_4:66377118-66377137 None:intergenic 35.0%
GACTTTATGTGTCTATGATC+TGG + chr1_4:66377136-66377155 None:intergenic 35.0%
GTTGATTGTAGTTTCACACA+TGG + chr1_4:66377190-66377209 None:intergenic 35.0%
TCCACATTTGATCCAAGAAT+AGG - chr1_4:66377330-66377349 Msa0178930:intron 35.0%
ACCTATTCTTGGATCAAATG+TGG + chr1_4:66377334-66377353 None:intergenic 35.0%
AATCGTGAAGGTAATCATCA+CGG + chr1_4:66377498-66377517 None:intergenic 35.0%
GAAATTCTCTCTGTGTAAGT+TGG - chr1_4:66377745-66377764 Msa0178930:intron 35.0%
AGAAGATTCATGTGGTACAT+GGG - chr1_4:66377857-66377876 Msa0178930:intron 35.0%
! TGCGAATCTTTTGATACTGT+GGG + chr1_4:66377891-66377910 None:intergenic 35.0%
! CAAAGAAAAGAAAGTGCAGT+AGG - chr1_4:66377945-66377964 Msa0178930:intron 35.0%
GAACACACATGTAAAGGAAT+AGG + chr1_4:66377987-66378006 None:intergenic 35.0%
ACAAACTGCTTGTGAATGTA+AGG + chr1_4:66378044-66378063 None:intergenic 35.0%
TCATACAAGGTAGATATCTG+TGG - chr1_4:66378144-66378163 Msa0178930:intron 35.0%
AAAGATGTCACGTGATAACA+CGG + chr1_4:66378188-66378207 None:intergenic 35.0%
TCTGCACACTGAATTTCAAA+TGG + chr1_4:66378591-66378610 None:intergenic 35.0%
! TTTGAAATTCAGTGTGCAGA+TGG - chr1_4:66378591-66378610 Msa0178930:intron 35.0%
TGGTTAACTGAAGTCTAGTT+AGG - chr1_4:66378611-66378630 Msa0178930:intron 35.0%
! ATCAAAGCTCTTTGTCGATT+TGG + chr1_4:66378745-66378764 None:intergenic 35.0%
! TGATTTTCAGTGTACTCCAA+TGG - chr1_4:66378784-66378803 Msa0178930:intron 35.0%
! TGGATTAGATTACCAGAAGA+GGG - chr1_4:66378866-66378885 Msa0178930:intron 35.0%
!!! GCACATTGGTTTGCTTTTTT+AGG - chr1_4:66378921-66378940 Msa0178930:intron 35.0%
!!! GCTTTTTTAGGATGGTAGTA+TGG - chr1_4:66378933-66378952 Msa0178930:intron 35.0%
!!! CAATTGGATTTTGGTTCAGT+TGG - chr1_4:66378970-66378989 Msa0178930:CDS 35.0%
TCTTGTACTTGCTTACTGTT+AGG - chr1_4:66379123-66379142 Msa0178930:CDS 35.0%
AGTGGTTAGAAAGAAGAACC+TGG + chr1_4:66371577-66371596 None:intergenic 40.0%
! TTATGCTGCTTGGCATGTTA+TGG - chr1_4:66371665-66371684 Msa0178930:three_prime_UTR 40.0%
CTTGGCATGTTATGGCTTAA+AGG - chr1_4:66371673-66371692 Msa0178930:three_prime_UTR 40.0%
CAGGATTTGACATCAGAATC+TGG - chr1_4:66371886-66371905 Msa0178930:three_prime_UTR 40.0%
ACTCTAACCCATACGATGTA+CGG - chr1_4:66372179-66372198 Msa0178930:intron 40.0%
ACAAAACCCGTACATCGTAT+GGG + chr1_4:66372189-66372208 None:intergenic 40.0%
TACAAAACCCGTACATCGTA+TGG + chr1_4:66372190-66372209 None:intergenic 40.0%
GTCTAGTGGTAAAAGCTCTA+AGG - chr1_4:66372514-66372533 Msa0178930:intron 40.0%
!! AAGGTGTTGTTATGGGTAGT+TGG - chr1_4:66372533-66372552 Msa0178930:intron 40.0%
TATGTCAACGTGTGGAAAGA+CGG - chr1_4:66372910-66372929 Msa0178930:intron 40.0%
TCAGCGAGGAGAAATATTAG+GGG - chr1_4:66373268-66373287 Msa0178930:intron 40.0%
! GAAATTGGTGGGCATGAAAT+TGG - chr1_4:66373468-66373487 Msa0178930:intron 40.0%
! ACTTGATGACAAAATTCGGC+TGG - chr1_4:66373638-66373657 Msa0178930:intron 40.0%
CCATTGGATCTAGCACATTT+AGG + chr1_4:66373702-66373721 None:intergenic 40.0%
CCTAAATGTGCTAGATCCAA+TGG - chr1_4:66373699-66373718 Msa0178930:intron 40.0%
AGAAAAGTGGAGGGAAAATG+TGG - chr1_4:66373725-66373744 Msa0178930:intron 40.0%
GAAAAGTGGAGGGAAAATGT+GGG - chr1_4:66373726-66373745 Msa0178930:intron 40.0%
AAAAGTGGAGGGAAAATGTG+GGG - chr1_4:66373727-66373746 Msa0178930:intron 40.0%
ATTAGGGCAACAATAGCTTG+AGG - chr1_4:66373754-66373773 Msa0178930:intron 40.0%
TTAGGGCAACAATAGCTTGA+GGG - chr1_4:66373755-66373774 Msa0178930:intron 40.0%
CCATTGGATCTTGCACATTT+AGG + chr1_4:66374068-66374087 None:intergenic 40.0%
CCTAAATGTGCAAGATCCAA+TGG - chr1_4:66374065-66374084 Msa0178930:intron 40.0%
CAGAAAAGTGGAGGGAAAAA+TGG - chr1_4:66374090-66374109 Msa0178930:intron 40.0%
GAAAAGTGGAGGGAAAAATG+GGG - chr1_4:66374092-66374111 Msa0178930:intron 40.0%
AAAAGTGGAGGGAAAAATGG+GGG - chr1_4:66374093-66374112 Msa0178930:intron 40.0%
GATCCAATGGCTCAAAAAAG+TGG - chr1_4:66374444-66374463 Msa0178930:intron 40.0%
CAATGGCTCAAAAAAGTGGA+GGG - chr1_4:66374448-66374467 Msa0178930:intron 40.0%
AAAAGTGGAGGGAAAAATGG+GGG - chr1_4:66374093-66374112 Msa0178930:intron 40.0%
TTAGGGCAACAATAGCTTGA+AGG - chr1_4:66373755-66373774 Msa0178930:intron 40.0%
TAGGGCAACAATAGCTTGAA+GGG - chr1_4:66374490-66374509 Msa0178930:intron 40.0%
CCATTGGATCTTGCACATTT+AGG + chr1_4:66374068-66374087 None:intergenic 40.0%
CCTAAATGTGCAAGATCCAA+TGG - chr1_4:66374065-66374084 Msa0178930:intron 40.0%
AGAAAAGTGGAGGGAAGAAT+GGG - chr1_4:66374818-66374837 Msa0178930:intron 40.0%
TTAGGGCAACAATAGCTTGA+AGG - chr1_4:66373755-66373774 Msa0178930:intron 40.0%
TAGGGCAACAATAGCTTGAA+GGG - chr1_4:66374490-66374509 Msa0178930:intron 40.0%
!! TTCCTCTCGTTTGCTGTATT+AGG - chr1_4:66375133-66375152 Msa0178930:intron 40.0%
AACCTAATACAGCAAACGAG+AGG + chr1_4:66375138-66375157 None:intergenic 40.0%
GCCGAGTTTGCATGAAAATT+AGG + chr1_4:66375354-66375373 None:intergenic 40.0%
AATTGACCATTGACCAGTAC+GGG + chr1_4:66375689-66375708 None:intergenic 40.0%
! CCGGGTTAGACATATAATCA+AGG + chr1_4:66375749-66375768 None:intergenic 40.0%
ATTATCCGATACTTCCTGCA+CGG + chr1_4:66376016-66376035 None:intergenic 40.0%
GGATACTTCTGATACGTATC+GGG - chr1_4:66376066-66376085 Msa0178930:intron 40.0%
! TGATACGTATCGGGAAGTAT+CGG - chr1_4:66376075-66376094 Msa0178930:intron 40.0%
! CGTCATCCATCTGAAAGTAT+CGG - chr1_4:66376134-66376153 Msa0178930:intron 40.0%
!! GTCATCCATCTGAAAGTATC+GGG - chr1_4:66376135-66376154 Msa0178930:intron 40.0%
!! TCATCCATCTGAAAGTATCG+GGG - chr1_4:66376136-66376155 Msa0178930:intron 40.0%
ATGTGAGGTTATCACTTGTG+TGG - chr1_4:66376377-66376396 Msa0178930:intron 40.0%
CGGGATATGATACCATCATT+GGG + chr1_4:66376455-66376474 None:intergenic 40.0%
TCGGGATATGATACCATCAT+TGG + chr1_4:66376456-66376475 None:intergenic 40.0%
CATATCCCGATTCAACATTG+TGG - chr1_4:66376466-66376485 Msa0178930:intron 40.0%
TATCCCGATTCAACATTGTG+GGG - chr1_4:66376468-66376487 Msa0178930:intron 40.0%
CCCCAAAGTCTTAAGACATT+AGG + chr1_4:66376575-66376594 None:intergenic 40.0%
TGATATCAATCTCACTTGGG+TGG - chr1_4:66376602-66376621 Msa0178930:intron 40.0%
TCTCTCTTCTCGTCAAAGAA+AGG - chr1_4:66377029-66377048 Msa0178930:intron 40.0%
AAAGTCTCACAGTTACAGAG+CGG - chr1_4:66377150-66377169 Msa0178930:intron 40.0%
TCTGGTGACATAGCCAAATA+AGG + chr1_4:66377246-66377265 None:intergenic 40.0%
! TGGCGTCAATTTTACTTGTG+TGG - chr1_4:66377417-66377436 Msa0178930:intron 40.0%
TGTGCAATCCAATCCATTGT+AGG - chr1_4:66377455-66377474 Msa0178930:intron 40.0%
! CTCATTAGCCTACAATGGAT+TGG + chr1_4:66377466-66377485 None:intergenic 40.0%
! GATTGCTCATTAGCCTACAA+TGG + chr1_4:66377471-66377490 None:intergenic 40.0%
ATCGTGAAGGTAATCATCAC+GGG + chr1_4:66377497-66377516 None:intergenic 40.0%
TCTTCTCATCAATTCGATCC+TGG + chr1_4:66377843-66377862 None:intergenic 40.0%
GAGAAGATTCATGTGGTACA+TGG - chr1_4:66377856-66377875 Msa0178930:intron 40.0%
! CTGCGAATCTTTTGATACTG+TGG + chr1_4:66377892-66377911 None:intergenic 40.0%
CACAGTATCAAAAGATTCGC+AGG - chr1_4:66377890-66377909 Msa0178930:intron 40.0%
! AGCATCGAACACACATGTAA+AGG + chr1_4:66377993-66378012 None:intergenic 40.0%
TTGCTCATAAACAATGTCCG+TGG - chr1_4:66378071-66378090 Msa0178930:intron 40.0%
! TGTGGTCTAGAACTGTCATA+GGG - chr1_4:66378162-66378181 Msa0178930:intron 40.0%
! TAGCTTGTGACAAGTCATCA+CGG - chr1_4:66378274-66378293 Msa0178930:intron 40.0%
! TGCAGAAAGGGTGTGTTTAT+GGG - chr1_4:66378366-66378385 Msa0178930:intron 40.0%
! TCTAGTTAGGAGCATACAGA+TGG - chr1_4:66378624-66378643 Msa0178930:CDS 40.0%
! CGCAACAAATGGAGTATTTG+AGG - chr1_4:66378650-66378669 Msa0178930:intron 40.0%
CCAGAGTGAACCTAAAACAA+GGG + chr1_4:66378849-66378868 None:intergenic 40.0%
TCCAGAGTGAACCTAAAACA+AGG + chr1_4:66378850-66378869 None:intergenic 40.0%
! CTGGATTAGATTACCAGAAG+AGG - chr1_4:66378865-66378884 Msa0178930:intron 40.0%
ATTAGATTACCAGAAGAGGG+TGG - chr1_4:66378869-66378888 Msa0178930:intron 40.0%
ACTCATGAGAACTTGCACAT+TGG - chr1_4:66378907-66378926 Msa0178930:intron 40.0%
! TTTAGGATGGTAGTATGGCA+TGG - chr1_4:66378938-66378957 Msa0178930:intron 40.0%
! TGGTAGTATGGCATGGTTTT+TGG - chr1_4:66378945-66378964 Msa0178930:intron 40.0%
!!! GGCATGGTTTTTGGTTCAAT+TGG - chr1_4:66378954-66378973 Msa0178930:intron 40.0%
TTCAAATAGGAATGCTGGTC+TGG - chr1_4:66379061-66379080 Msa0178930:CDS 40.0%
AAGTACAAGATAACCTGAGG+TGG + chr1_4:66379113-66379132 None:intergenic 40.0%
AGCAAGTACAAGATAACCTG+AGG + chr1_4:66379116-66379135 None:intergenic 40.0%
CTACGGAGTAACTTGGGATT+TGG + chr1_4:66371488-66371507 None:intergenic 45.0%
CGCGTGCCAATACATTACTA+CGG + chr1_4:66371505-66371524 None:intergenic 45.0%
AAGAACCTGGAACTGTTGCT+GGG + chr1_4:66371564-66371583 None:intergenic 45.0%
CTCTAACCCATACGATGTAC+GGG - chr1_4:66372180-66372199 Msa0178930:intron 45.0%
GGCGGGATTAGGGTTAATTA+AGG - chr1_4:66372609-66372628 Msa0178930:CDS 45.0%
ATGTCAACGTGTGGAAAGAC+GGG - chr1_4:66372911-66372930 Msa0178930:intron 45.0%
! AGGGGTTGCTGCATTTTAGA+AGG - chr1_4:66373286-66373305 Msa0178930:intron 45.0%
! TTGGTGCGCTGCATTTTAGA+TGG - chr1_4:66373325-66373344 Msa0178930:intron 45.0%
GATCCAATGGCTCAGAAAAG+TGG - chr1_4:66373712-66373731 Msa0178930:intron 45.0%
CAATGGCTCAGAAAAGTGGA+GGG - chr1_4:66373716-66373735 Msa0178930:intron 45.0%
TAGGGCAACAATAGCTTGAG+GGG - chr1_4:66373756-66373775 Msa0178930:intron 45.0%
GATCCAATGGCTCAGAAAAG+TGG - chr1_4:66373712-66373731 Msa0178930:intron 45.0%
CAATGGCTCAGAAAAGTGGA+GGG - chr1_4:66373716-66373735 Msa0178930:intron 45.0%
AAAGTGGAGGGAAAAATGGG+GGG - chr1_4:66374094-66374113 Msa0178930:intron 45.0%
TTAGGGCAACAGTAGCTTGA+AGG - chr1_4:66374123-66374142 Msa0178930:intron 45.0%
TAGGGCAACAGTAGCTTGAA+GGG - chr1_4:66374124-66374143 Msa0178930:intron 45.0%
CCATTGGATCTTGCACATTC+AGG + chr1_4:66374434-66374453 None:intergenic 45.0%
CCTGAATGTGCAAGATCCAA+TGG - chr1_4:66374431-66374450 Msa0178930:intron 45.0%
!!! CCTCCACTTTTTTGAGCCAT+TGG + chr1_4:66374450-66374469 None:intergenic 45.0%
CCAATGGCTCAAAAAAGTGG+AGG - chr1_4:66374447-66374466 Msa0178930:intron 45.0%
AAAGTGGAGGGAAAAATGGG+GGG - chr1_4:66374094-66374113 Msa0178930:intron 45.0%
GATCCAATGGCTCAGAAAAG+TGG - chr1_4:66373712-66373731 Msa0178930:intron 45.0%
CAATGGCTCAGAAAAGTGGA+GGG - chr1_4:66373716-66373735 Msa0178930:intron 45.0%
CAGAAAAGTGGAGGGAAGAA+TGG - chr1_4:66374817-66374836 Msa0178930:intron 45.0%
GAAAAGTGGAGGGAAGAATG+GGG - chr1_4:66374819-66374838 Msa0178930:intron 45.0%
AAAAGTGGAGGGAAGAATGG+GGG - chr1_4:66374820-66374839 Msa0178930:intron 45.0%
GTACGAATTCCTACGTGTCT+GGG - chr1_4:66375527-66375546 Msa0178930:intron 45.0%
!! TGAGTGAAATTCGGTGTGTG+TGG + chr1_4:66375725-66375744 None:intergenic 45.0%
TAAGTGGGAAATATCTGGGC+AGG - chr1_4:66375987-66376006 Msa0178930:intron 45.0%
!! GATACGTATCGGGAAGTATC+GGG - chr1_4:66376076-66376095 Msa0178930:intron 45.0%
TATCGATGCAGGATACGTAG+AGG - chr1_4:66376103-66376122 Msa0178930:intron 45.0%
CAAGTTAGCGCATGTACCTT+AGG - chr1_4:66376164-66376183 Msa0178930:intron 45.0%
ATCCCGATTCAACATTGTGG+GGG - chr1_4:66376469-66376488 Msa0178930:intron 45.0%
ATGTACATGATCCACCACCA+AGG + chr1_4:66376507-66376526 None:intergenic 45.0%
GTGATGATACATCCCAATGC+AGG - chr1_4:66376641-66376660 Msa0178930:intron 45.0%
TGAAGGTAATCATCACGGGT+TGG + chr1_4:66377493-66377512 None:intergenic 45.0%
TGGTACTTGTCATATGCCAC+GGG + chr1_4:66377823-66377842 None:intergenic 45.0%
CTGGTACTTGTCATATGCCA+CGG + chr1_4:66377824-66377843 None:intergenic 45.0%
TTCCGTAGATGGTACATCCA+CGG + chr1_4:66378091-66378110 None:intergenic 45.0%
!! TAGTTCTGCTTGCTGTAGAG+AGG - chr1_4:66378119-66378138 Msa0178930:intron 45.0%
!! CTGTAGAGAGGCATCATACA+AGG - chr1_4:66378131-66378150 Msa0178930:intron 45.0%
! CTGTGGTCTAGAACTGTCAT+AGG - chr1_4:66378161-66378180 Msa0178930:intron 45.0%
! GACAGTCACTAGTTTACCGT+TGG - chr1_4:66378217-66378236 Msa0178930:intron 45.0%
! CTGCAGAAAGGGTGTGTTTA+TGG - chr1_4:66378365-66378384 Msa0178930:intron 45.0%
ACAGATGGATGCGCAACAAA+TGG - chr1_4:66378639-66378658 Msa0178930:intron 45.0%
!!! CCCTTGTTTTAGGTTCACTC+TGG - chr1_4:66378846-66378865 Msa0178930:intron 45.0%
! CTTTCTTTTCCACCCTCTTC+TGG + chr1_4:66378881-66378900 None:intergenic 45.0%
CAGAAGAGGGTGGAAAAGAA+AGG - chr1_4:66378879-66378898 Msa0178930:intron 45.0%
ACACAATATCTCACCACCTC+AGG - chr1_4:66379097-66379116 Msa0178930:CDS 45.0%
!!! TAGTTTTTTTTTTTTTTTTA+AGG - chr1_4:66372769-66372788 Msa0178930:intron 5.0%
!! AAATATTTGAATAAAAAAAA+AGG - chr1_4:66373553-66373572 Msa0178930:intron 5.0%
!! AATATTTGATTAAAAAAAAA+AGG - chr1_4:66374642-66374661 Msa0178930:intron 5.0%
!! TAAAAATAAAATTTAATCTT+TGG - chr1_4:66376045-66376064 Msa0178930:intron 5.0%
!!! TTATCTTAAATTTTAATTTT+TGG - chr1_4:66376725-66376744 Msa0178930:intron 5.0%
AACTTCCCAGCAACAGTTCC+AGG - chr1_4:66371556-66371575 Msa0178930:three_prime_UTR 50.0%
GAAGAACCTGGAACTGTTGC+TGG + chr1_4:66371565-66371584 None:intergenic 50.0%
ATGTGCTACGAGCCTATGAC+TGG + chr1_4:66372142-66372161 None:intergenic 50.0%
TTTAGACCCGCCAAAAAGGG+CGG - chr1_4:66372591-66372610 Msa0178930:CDS 50.0%
! AACCCTAATCCCGCCCTTTT+TGG + chr1_4:66372604-66372623 None:intergenic 50.0%
!! CCTCCACTTTTCTGAGCCAT+TGG + chr1_4:66373718-66373737 None:intergenic 50.0%
CCAATGGCTCAGAAAAGTGG+AGG - chr1_4:66373715-66373734 Msa0178930:intron 50.0%
!! CCTCCACTTTTCTGAGCCAT+TGG + chr1_4:66373718-66373737 None:intergenic 50.0%
CCAATGGCTCAGAAAAGTGG+AGG - chr1_4:66373715-66373734 Msa0178930:intron 50.0%
!! CCTCCACTTTTCTGAGCCAT+TGG + chr1_4:66373718-66373737 None:intergenic 50.0%
CCAATGGCTCAGAAAAGTGG+AGG - chr1_4:66373715-66373734 Msa0178930:intron 50.0%
AAAGTGGAGGGAAGAATGGG+GGG - chr1_4:66374821-66374840 Msa0178930:intron 50.0%
GGTACGAATTCCTACGTGTC+TGG - chr1_4:66375526-66375545 Msa0178930:intron 50.0%
TGTACATAGTCGTCCCGTAC+TGG - chr1_4:66375673-66375692 Msa0178930:intron 50.0%
TTTATTTACCCGGCGTTGCC+CGG + chr1_4:66375768-66375787 None:intergenic 50.0%
! GGTATCCGTGCAGGAAGTAT+CGG - chr1_4:66376008-66376027 Msa0178930:intron 50.0%
! TATCGGGCATGTATCGATGC+AGG - chr1_4:66376092-66376111 Msa0178930:intron 50.0%
GAAGCCCCGATACTTTCAGA+TGG + chr1_4:66376143-66376162 None:intergenic 50.0%
ACGAAATTCTAGCCCGTGCT+TGG + chr1_4:66376227-66376246 None:intergenic 50.0%
! GTGTTGATCCACACCAGTGT+TGG - chr1_4:66376416-66376435 Msa0178930:intron 50.0%
TACCATCATTGGGCCTTCTG+CGG + chr1_4:66376445-66376464 None:intergenic 50.0%
CTCCCCCACAATGTTGAATC+GGG + chr1_4:66376474-66376493 None:intergenic 50.0%
GCTCCCCCACAATGTTGAAT+CGG + chr1_4:66376475-66376494 None:intergenic 50.0%
GATTCAACATTGTGGGGGAG+CGG - chr1_4:66376474-66376493 Msa0178930:intron 50.0%
ATTCAACATTGTGGGGGAGC+GGG - chr1_4:66376475-66376494 Msa0178930:intron 50.0%
CTTTCATGGGAGCCTGCATT+GGG + chr1_4:66376656-66376675 None:intergenic 50.0%
ACTTTCATGGGAGCCTGCAT+TGG + chr1_4:66376657-66376676 None:intergenic 50.0%
GACTCTCTGTGTCTGTGATC+TGG + chr1_4:66377264-66377283 None:intergenic 50.0%
!! TCTTAGCTTGTCTCTTCCCG+TGG - chr1_4:66377804-66377823 Msa0178930:intron 50.0%
CGTGGCATATGACAAGTACC+AGG - chr1_4:66377822-66377841 Msa0178930:intron 50.0%
GTCCGTGGATGTACCATCTA+CGG - chr1_4:66378086-66378105 Msa0178930:intron 50.0%
TTAGACCCGCCAAAAAGGGC+GGG - chr1_4:66372592-66372611 Msa0178930:CDS 55.0%
!! CTAATCCCGCCCTTTTTGGC+GGG + chr1_4:66372600-66372619 None:intergenic 55.0%
! CCTAATCCCGCCCTTTTTGG+CGG + chr1_4:66372601-66372620 None:intergenic 55.0%
CGCCAAAAAGGGCGGGATTA+GGG - chr1_4:66372599-66372618 Msa0178930:CDS 55.0%
! AGTCGTCCCGTACTGGTCAA+TGG - chr1_4:66375680-66375699 Msa0178930:intron 55.0%
TTATTTACCCGGCGTTGCCC+GGG + chr1_4:66375767-66375786 None:intergenic 55.0%
ATTCTAGCCCGTGCTTGGCA+CGG + chr1_4:66376222-66376241 None:intergenic 55.0%
TTCCGCAGAAGGCCCAATGA+TGG - chr1_4:66376440-66376459 Msa0178930:intron 55.0%
AGAGGCCAAGAGCTGCAGAA+AGG - chr1_4:66378353-66378372 Msa0178930:intron 55.0%
GAGGCCAAGAGCTGCAGAAA+GGG - chr1_4:66378354-66378373 Msa0178930:intron 55.0%
CACACCCTTTCTGCAGCTCT+TGG + chr1_4:66378361-66378380 None:intergenic 55.0%
CCGCCAAAAAGGGCGGGATT+AGG - chr1_4:66372598-66372617 Msa0178930:CDS 60.0%
ATGTCTAACCCGGGCAACGC+CGG - chr1_4:66375756-66375775 Msa0178930:intron 60.0%
ATCTGGGCAGGTATCCGTGC+AGG - chr1_4:66375999-66376018 Msa0178930:intron 60.0%
TTGGACACCCGTGCCAAGCA+CGG - chr1_4:66376211-66376230 Msa0178930:intron 60.0%
TTCTAGCCCGTGCTTGGCAC+GGG + chr1_4:66376221-66376240 None:intergenic 60.0%
TGCGGAAGCCAACACTGGTG+TGG + chr1_4:66376427-66376446 None:intergenic 60.0%
CCTTCTGCGGAAGCCAACAC+TGG + chr1_4:66376432-66376451 None:intergenic 60.0%
!! CCAGTGTTGGCTTCCGCAGA+AGG - chr1_4:66376429-66376448 Msa0178930:intron 60.0%
TGTCTAACCCGGGCAACGCC+GGG - chr1_4:66375757-66375776 Msa0178930:intron 65.0%
TGGACACCCGTGCCAAGCAC+GGG - chr1_4:66376212-66376231 Msa0178930:intron 65.0%
ACATTGTGGGGGAGCGGGAG+TGG - chr1_4:66376480-66376499 Msa0178930:intron 65.0%
CATTGTGGGGGAGCGGGAGT+GGG - chr1_4:66376481-66376500 Msa0178930:intron 65.0%
GGAGCGGGAGTGGGCCTTGG+TGG - chr1_4:66376490-66376509 Msa0178930:intron 75.0%
GCGGGAGTGGGCCTTGGTGG+TGG - chr1_4:66376493-66376512 Msa0178930:intron 75.0%
! GGGGGAGCGGGAGTGGGCCT+TGG - chr1_4:66376487-66376506 Msa0178930:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 66371347 66379192 66371347 ID=Msa0178930;Name=Msa0178930
chr1_4 mRNA 66371347 66379192 66371347 ID=Msa0178930-mRNA-1;Parent=Msa0178930;Name=Msa0178930-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.33|0.25|0.5|0.66|0.75|4|590|145
chr1_4 exon 66371347 66371936 66371347 ID=Msa0178930-mRNA-1:exon:21683;Parent=Msa0178930-mRNA-1
chr1_4 exon 66372573 66372742 66372573 ID=Msa0178930-mRNA-1:exon:21682;Parent=Msa0178930-mRNA-1
chr1_4 exon 66378614 66378650 66378614 ID=Msa0178930-mRNA-1:exon:21681;Parent=Msa0178930-mRNA-1
chr1_4 exon 66378962 66379192 66378962 ID=Msa0178930-mRNA-1:exon:21680;Parent=Msa0178930-mRNA-1
chr1_4 CDS 66378962 66379192 66378962 ID=Msa0178930-mRNA-1:cds;Parent=Msa0178930-mRNA-1
chr1_4 CDS 66378614 66378650 66378614 ID=Msa0178930-mRNA-1:cds;Parent=Msa0178930-mRNA-1
chr1_4 CDS 66372573 66372742 66372573 ID=Msa0178930-mRNA-1:cds;Parent=Msa0178930-mRNA-1
chr1_4 three_prime_UTR 66371347 66371936 66371347 ID=Msa0178930-mRNA-1:three_prime_utr;Parent=Msa0178930-mRNA-1
Gene Sequence

>Msa0178930

ATGGCTACGTTTTCAATCGGAACACACTTGTCTATGTTCCAACATTCACGAAATTCTAAACTTTCATCTCACACAATTCAATCTCAACCCTTCTTTGCTTCTTCATCTTTTACTTCTTGTAGAACTAGATTCGGAGTTCCAAATCCCAAGTTACTCCGTAGTAATGTATTGGCACGCGCTGAAGACAAAGCCAGAGATTCTAACTCACAAACTTCCCAGCAACAGTTCCAGGATTTGACATCAGAATCTGGAACTTGTGATCCTCTATGTGTTCTTCTTAGCTTGTCTCTTCCCGTGGCATATGACAAGTACCAGGATCGAATTGATGAGAAGATTCATGTGGTACATGGGATTATTCACCCACAGTATCAAAAGATTCGCAGGATTGTTTTGAGCATTATTCCAAATCGTTCAAGCAAAGAAAAGAAAGTGCAGTAG

Protein sequence

>Msa0178930

MATFSIGTHLSMFQHSRNSKLSSHTIQSQPFFASSSFTSCRTRFGVPNPKLLRSNVLARAEDKARDSNSQTSQQQFQDLTSESGTCDPLCVLLSLSLPVAYDKYQDRIDEKIHVVHGIIHPQYQKIRRIVLSIIPNRSSKEKKVQ*