AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0424040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424040 MtrunA17_Chr3g0125661 96.652 448 15 0 1 448 1 448 0.0 897
Msa0424040 MtrunA17_Chr1g0159541 81.938 454 74 6 1 447 1 453 0.0 754
Msa0424040 MtrunA17_Chr7g0222461 53.604 444 189 9 9 447 10 441 5.52e-155 447
Msa0424040 MtrunA17_Chr5g0420221 53.811 433 186 6 8 438 16 436 7.24e-155 446
Msa0424040 MtrunA17_Chr7g0224571 48.984 443 213 7 9 446 1 435 1.24e-140 410
Msa0424040 MtrunA17_Chr4g0056741 49.161 417 191 6 6 421 3 399 1.35e-132 389
Msa0424040 MtrunA17_Chr5g0398581 45.657 449 217 8 6 447 3 431 3.56e-129 380
Msa0424040 MtrunA17_Chr5g0400941 46.083 434 211 9 1 415 1 430 4.86e-127 377
Msa0424040 MtrunA17_Chr4g0054261 40.421 428 235 6 7 415 26 452 6.06e-109 331
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424040 AT1G76990.4 72.907 454 114 4 1 447 1 452 0.0 679
Msa0424040 AT1G76990.5 72.907 454 114 4 1 447 1 452 0.0 679
Msa0424040 AT1G76990.2 72.907 454 114 4 1 447 1 452 0.0 679
Msa0424040 AT1G76990.3 72.907 454 114 4 1 447 1 452 0.0 679
Msa0424040 AT1G76990.1 72.907 454 114 4 1 447 1 452 0.0 679
Msa0424040 AT1G69040.1 51.936 439 200 5 9 444 7 437 1.93e-148 430
Msa0424040 AT1G69040.2 51.936 439 200 5 9 444 11 441 3.53e-148 430
Msa0424040 AT2G03730.2 50.000 452 208 8 4 445 3 446 2.83e-144 420
Msa0424040 AT2G03730.1 50.000 452 208 8 4 445 3 446 2.83e-144 420
Msa0424040 AT5G25320.1 47.903 453 204 9 1 422 1 452 7.87e-144 420
Msa0424040 AT3G01990.7 51.724 406 176 8 10 410 17 407 1.15e-135 397
Msa0424040 AT3G01990.5 51.724 406 176 8 10 410 17 407 1.15e-135 397
Msa0424040 AT3G01990.10 51.724 406 176 8 10 410 3 393 1.41e-135 397
Msa0424040 AT3G01990.1 51.724 406 176 8 10 410 3 393 1.41e-135 397
Msa0424040 AT3G01990.6 51.724 406 176 8 10 410 17 407 1.65e-135 397
Msa0424040 AT3G01990.11 51.724 406 176 8 10 410 3 393 2.95e-135 396
Msa0424040 AT5G25320.3 47.585 414 187 7 38 422 1 413 8.60e-128 378
Msa0424040 AT1G12420.1 48.077 416 196 8 8 422 6 402 4.46e-121 360
Msa0424040 AT4G22780.1 48.507 402 183 7 12 410 9 389 9.89e-121 360
Msa0424040 AT4G22780.2 48.507 402 183 7 12 410 9 389 9.89e-121 360
Msa0424040 AT5G65890.1 40.860 465 248 7 7 446 8 470 3.85e-111 336
Msa0424040 AT5G65890.3 40.860 465 248 7 7 446 8 470 3.85e-111 336
Msa0424040 AT5G25320.2 46.113 373 170 8 1 342 1 373 1.79e-108 326
Msa0424040 AT3G01990.4 50.437 343 150 8 10 347 17 344 1.35e-106 320
Msa0424040 AT3G01990.9 50.437 343 150 8 10 347 3 330 1.50e-106 319
Msa0424040 AT3G01990.2 50.888 338 146 8 10 342 17 339 2.56e-106 319
Msa0424040 AT1G12420.2 46.552 348 167 7 76 422 1 330 3.77e-93 286
Msa0424040 AT5G65890.4 38.810 420 230 7 52 446 1 418 1.21e-91 284
Msa0424040 AT5G65890.2 38.810 420 230 7 52 446 1 418 1.21e-91 284
Msa0424040 AT3G01990.3 48.896 317 142 8 10 321 17 318 1.44e-87 270
Msa0424040 AT3G01990.8 48.896 317 142 8 10 321 3 304 1.90e-87 269
Msa0424040 AT5G65890.5 36.994 346 194 6 123 446 13 356 2.94e-69 224

Find 130 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCACTTCTTCTTTGTTC+TGG 0.217028 3_2:-74218341 None:intergenic
TGGTGTGGGCGTGGGGTTAA+TGG 0.246618 3_2:-74214981 None:intergenic
CCAAATGTTGTTTGCTGATC+GGG 0.257041 3_2:+74218701 Msa0424040:CDS
TAACTTGTTGGAAAGGTTCT+TGG 0.291999 3_2:+74219888 Msa0424040:CDS
ACCTTTAGGAATACTTTATT+CGG 0.293495 3_2:+74219350 Msa0424040:intron
AACAATCATGCATCTTAGTT+TGG 0.296195 3_2:+74219914 Msa0424040:exon
GGTGGAGCCGCCTATCAATA+TGG 0.298908 3_2:-74218680 None:intergenic
GGGAATGTCCTCCCTCTTTC+CGG 0.308334 3_2:+74218757 Msa0424040:CDS
GCTAAAACTAGCTTCTTCTT+TGG 0.325528 3_2:+74219865 Msa0424040:CDS
ATTGGTCAGGCAAATGGGTT+GGG 0.336152 3_2:+74218364 Msa0424040:CDS
CAGCTACAACCACGTTAAAA+TGG 0.336988 3_2:-74218479 None:intergenic
TCATACTCAGGATCAAAATA+TGG 0.343119 3_2:-74215985 None:intergenic
CTTCTTCTTTGGTAACTTGT+TGG 0.350472 3_2:+74219876 Msa0424040:CDS
ATAGAATGTTGTGAGGAAAA+AGG 0.357579 3_2:+74218792 Msa0424040:CDS
ACCACTTCCAGTAGAATTCC+AGG 0.366064 3_2:-74217149 None:intergenic
CCCGATCAGCAAACAACATT+TGG 0.373612 3_2:-74218701 None:intergenic
CATATAGCGATTGAGCTAAT+CGG 0.383863 3_2:+74218405 Msa0424040:CDS
ACAAAGAAGAAGTGAAGAAT+TGG 0.384276 3_2:+74218346 Msa0424040:CDS
CTTGCAAAGTGGTGTGGGCG+TGG 0.401349 3_2:-74214990 None:intergenic
TTGCAAAGTGGTGTGGGCGT+GGG 0.407315 3_2:-74214989 None:intergenic
TTAGCCCATCCTCGTGTCTC+TGG 0.409686 3_2:-74219847 None:intergenic
CTGAAGTGTGGACTCATAAC+AGG 0.416112 3_2:+74218499 Msa0424040:CDS
ATCAGAAGATATGTAAGCTT+TGG 0.416198 3_2:-74217204 None:intergenic
TGAGTTTCACCCATATTGAT+AGG 0.418165 3_2:+74218670 Msa0424040:CDS
TGAAGAATTGGTCAGGCAAA+TGG 0.419920 3_2:+74218358 Msa0424040:CDS
TCTGGTTCTTTGTCATATGT+TGG 0.422147 3_2:-74219829 None:intergenic
CCTTGATTAGTGTACAGTTA+TGG 0.426480 3_2:-74216778 None:intergenic
TCGTACCATCATTGACATAA+AGG 0.431202 3_2:-74218536 None:intergenic
TTCTGATGGAGGATGGTTCA+TGG 0.433562 3_2:+74217220 Msa0424040:CDS
TTCTATGTGAGGGATGCATC+AGG 0.435247 3_2:+74219727 Msa0424040:CDS
TTGCTGAAATTCTCATACTC+AGG 0.439597 3_2:-74215997 None:intergenic
GAAGCACTTCGTAAAGAAAT+CGG 0.445977 3_2:+74219775 Msa0424040:CDS
GCCATTCTAAACAGCTTCTC+TGG 0.446469 3_2:-74215949 None:intergenic
TTAGAATGGCTGCAGTTTGT+TGG 0.449593 3_2:+74215962 Msa0424040:exon
GGTGAAACTCATGGACAAAC+TGG 0.453115 3_2:-74218658 None:intergenic
AACCATAGATCTCATTGAAA+AGG 0.459867 3_2:+74218109 Msa0424040:CDS
GATCGGGATTATGAAAGTTA+TGG 0.463149 3_2:+74218717 Msa0424040:CDS
ATTAAGAGCTTGTTCCCCTC+TGG 0.467903 3_2:-74219701 None:intergenic
AGAATGGCCTAACAGTTTGT+AGG 0.468609 3_2:+74219665 Msa0424040:CDS
ATACAGAAGGGGAGAAAGAA+AGG 0.470876 3_2:+74219395 Msa0424040:CDS
GGCCTAACAGTTTGTAGGGC+AGG 0.474532 3_2:+74219670 Msa0424040:CDS
TCTTTGGTAACTTGTTGGAA+AGG 0.475792 3_2:+74219881 Msa0424040:CDS
ACCAAATGTTGTTTGCTGAT+CGG 0.476294 3_2:+74218700 Msa0424040:CDS
TAACAAACCTGGAATTCTAC+TGG 0.480298 3_2:+74217142 Msa0424040:CDS
ATCAATATGGGTGAAACTCA+TGG 0.480529 3_2:-74218667 None:intergenic
GTTTCTCTTGCAAAGTGGTG+TGG 0.483534 3_2:-74214996 None:intergenic
TTTCTCTTGCAAAGTGGTGT+GGG 0.484468 3_2:-74214995 None:intergenic
ATAGAAGAATAAATCTGCTT+GGG 0.484707 3_2:+74219972 Msa0424040:three_prime_UTR
ACCAGAGAAGCTGTTTAGAA+TGG 0.486693 3_2:+74215948 Msa0424040:exon
ATATAGCGATTGAGCTAATC+GGG 0.490571 3_2:+74218406 Msa0424040:CDS
GAAGAAGTGAAGAATTGGTC+AGG 0.491176 3_2:+74218351 Msa0424040:CDS
TATAGAAGAATAAATCTGCT+TGG 0.491273 3_2:+74219971 Msa0424040:three_prime_UTR
AATTGGTCAGGCAAATGGGT+TGG 0.499259 3_2:+74218363 Msa0424040:CDS
ACAAGAATTCTGAGAGAGAA+TGG 0.499775 3_2:+74219649 Msa0424040:CDS
TGGGTTGGGGTGCATTCTGT+TGG 0.500255 3_2:+74218378 Msa0424040:CDS
CCATAACTGTACACTAATCA+AGG 0.500495 3_2:+74216778 Msa0424040:CDS
TACTTTATTCGGCACATGGA+CGG 0.504584 3_2:+74219361 Msa0424040:CDS
ATGGAGAGAAAGTTGCTAGT+AGG 0.510505 3_2:+74218634 Msa0424040:CDS
TGATGTACCTGCGATGCATA+AGG 0.510772 3_2:-74218930 None:intergenic
TGCAAAGTGGTGTGGGCGTG+GGG 0.511852 3_2:-74214988 None:intergenic
ATCCGATGAGATTGTGGCAT+GGG 0.515862 3_2:-74218904 None:intergenic
GAAGAATTGGTCAGGCAAAT+GGG 0.517093 3_2:+74218359 Msa0424040:CDS
TGTGGGCGTGGGGTTAATGG+TGG 0.517592 3_2:-74214978 None:intergenic
ACCTGGAATTCTACTGGAAG+TGG 0.521746 3_2:+74217148 Msa0424040:CDS
CGTTAAAATGGAGGCTGGCA+AGG 0.523869 3_2:-74218467 None:intergenic
TGTGTCCTTTATGTCAATGA+TGG 0.524064 3_2:+74218531 Msa0424040:CDS
GTGGAGCCGCCTATCAATAT+GGG 0.526124 3_2:-74218679 None:intergenic
TATCCTTTGCACACAACTCT+AGG 0.530398 3_2:-74219603 None:intergenic
TTTGATAGTGTTAACAAACC+TGG 0.530560 3_2:+74217131 Msa0424040:CDS
AAGATTAAGGTAAACCTTGG+AGG 0.533637 3_2:-74216030 None:intergenic
GATCAGCAAACAACATTTGG+TGG 0.537075 3_2:-74218698 None:intergenic
ATGGAGTAACGACAACAGAC+AGG 0.537588 3_2:+74218736 Msa0424040:CDS
AGAGAGATTGTTAAACTAAG+TGG 0.538851 3_2:+74215069 Msa0424040:five_prime_UTR
AAAGCTTACATATCTTCTGA+TGG 0.539350 3_2:+74217206 Msa0424040:CDS
GTTGTGTGCAAAGGATAGAG+TGG 0.544908 3_2:+74219609 Msa0424040:CDS
ACATATCTTCTGATGGAGGA+TGG 0.557362 3_2:+74217213 Msa0424040:CDS
GAATGGCCTAACAGTTTGTA+GGG 0.559276 3_2:+74219666 Msa0424040:CDS
TTGTGTGCAAAGGATAGAGT+GGG 0.560363 3_2:+74219610 Msa0424040:CDS
CAATGATGGACATGGAAGCT+TGG 0.560378 3_2:-74215240 None:intergenic
GATATCTCAGACAAGAGACC+AGG 0.560821 3_2:-74218438 None:intergenic
TTGGTCAGGCAAATGGGTTG+GGG 0.568849 3_2:+74218365 Msa0424040:CDS
CTCTTAATGTCTTCTATGTG+AGG 0.569159 3_2:+74219716 Msa0424040:CDS
AAGAACCAGAGACACGAGGA+TGG 0.572425 3_2:+74219842 Msa0424040:CDS
AGAAATCGGTAAGACAATGA+TGG 0.575183 3_2:+74219789 Msa0424040:CDS
GCAACAAAATCAACCCTCCA+AGG 0.576070 3_2:+74216016 Msa0424040:CDS
GGAATACTTTATTCGGCACA+TGG 0.576960 3_2:+74219357 Msa0424040:intron
GGATGCACACTTGATACAGA+AGG 0.577234 3_2:+74219382 Msa0424040:CDS
AATGATGGTAGATGTGAAGA+AGG 0.579827 3_2:+74219804 Msa0424040:CDS
AACCACGTTAAAATGGAGGC+TGG 0.580495 3_2:-74218472 None:intergenic
CTTTGGTGATTATGAAGTCA+AGG 0.580969 3_2:-74217187 None:intergenic
AGATTAAGGTAAACCTTGGA+GGG 0.581667 3_2:-74216029 None:intergenic
TTCCCATGCCACAATCTCAT+CGG 0.582164 3_2:+74218902 Msa0424040:CDS
AGGGCGATCCGATGAGATTG+TGG 0.584876 3_2:-74218910 None:intergenic
AACATCGTATCTACAAACAT+TGG 0.588230 3_2:+74214910 None:intergenic
GGATCGCCCTTATGCATCGC+AGG 0.593884 3_2:+74218923 Msa0424040:CDS
ATCTTGTTTCTCTTGCAAAG+TGG 0.600008 3_2:-74215001 None:intergenic
TACCTGCCCTACAAACTGTT+AGG 0.606101 3_2:-74219672 None:intergenic
ATATACAGTATTTCATGTCA+CGG 0.612062 3_2:+74218055 Msa0424040:intron
TCTTAATGTCTTCTATGTGA+GGG 0.617321 3_2:+74219717 Msa0424040:CDS
GGGCAGGTATATCAACCAGA+GGG 0.617488 3_2:+74219686 Msa0424040:CDS
GATGTACCTGCGATGCATAA+GGG 0.618291 3_2:-74218929 None:intergenic
GCTTACATATCTTCTGATGG+AGG 0.624587 3_2:+74217209 Msa0424040:CDS
TACAGAAGGGGAGAAAGAAA+GGG 0.629110 3_2:+74219396 Msa0424040:CDS
AGATTCTCTACTTTCGACGT+TGG 0.629510 3_2:-74215096 None:intergenic
CTAATCGGGAGAGACCGCCC+TGG 0.632484 3_2:+74218420 Msa0424040:CDS
GATGCACACTTGATACAGAA+GGG 0.635196 3_2:+74219383 Msa0424040:CDS
AGAACCAGAGACACGAGGAT+GGG 0.635874 3_2:+74219843 Msa0424040:CDS
TGTACTTTGCAGGGTCTCCG+TGG 0.635916 3_2:+74216742 Msa0424040:intron
TCTATGTGAGGGATGCATCA+GGG 0.636872 3_2:+74219728 Msa0424040:CDS
TGATGGTACGAGACAAGCCG+TGG 0.642205 3_2:+74218548 Msa0424040:CDS
ACGTGGTTGTAGCTGAAGTG+TGG 0.647683 3_2:+74218487 Msa0424040:CDS
GATCCGATGAGATTGTGGCA+TGG 0.649683 3_2:-74218905 None:intergenic
GTAAGTTGCAGAAATAAACA+AGG 0.653405 3_2:+74215908 Msa0424040:intron
GATGGAGGATGGTTCATGGA+TGG 0.659799 3_2:+74217224 Msa0424040:CDS
CTACAACCACGTTAAAATGG+AGG 0.661407 3_2:-74218476 None:intergenic
TTTCATGTCACGGATCAACA+AGG 0.661900 3_2:+74218065 Msa0424040:CDS
AATTACCATAGAATGTTGTG+AGG 0.670161 3_2:+74218785 Msa0424040:CDS
ATGCACACTTGATACAGAAG+GGG 0.670406 3_2:+74219384 Msa0424040:CDS
ATGGCAACTAGCATTGTCCA+CGG 0.673612 3_2:-74216759 None:intergenic
TATTCAAAGAAGAGTAAGCG+AGG 0.682011 3_2:+74219441 Msa0424040:CDS
GTTTCACCCATATTGATAGG+CGG 0.683397 3_2:+74218673 Msa0424040:CDS
TGGAGTAACGACAACAGACA+GGG 0.688299 3_2:+74218737 Msa0424040:CDS
AATCTGCATCTGAGACACAC+AGG 0.689398 3_2:+74215114 Msa0424040:five_prime_UTR
ATATCTCAGACAAGAGACCA+GGG 0.700312 3_2:-74218437 None:intergenic
GGATGCATCAGGGAACTCAG+TGG 0.701774 3_2:+74219738 Msa0424040:CDS
GAGCCTAGAGTTGTGTGCAA+AGG 0.708129 3_2:+74219600 Msa0424040:CDS
AGGGCAGGTATATCAACCAG+AGG 0.716826 3_2:+74219685 Msa0424040:CDS
GACAAAGAACCAGAGACACG+AGG 0.718132 3_2:+74219838 Msa0424040:CDS
GGCAGGTATATCAACCAGAG+GGG 0.745288 3_2:+74219687 Msa0424040:CDS
TCTCAGACAAGAGACCAGGG+CGG 0.828951 3_2:-74218434 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAATTTTTTACTTAATAA+TGG + chr3_2:74214951-74214970 Msa0424040:five_prime_UTR 10.0%
!!! GTAATTTTTTACTTAATAAT+GGG + chr3_2:74214952-74214971 Msa0424040:five_prime_UTR 10.0%
!!! TATATTTTACTCTATAATAT+GGG - chr3_2:74215636-74215655 None:intergenic 10.0%
!!! TATATTTGAAATCTATAATA+CGG - chr3_2:74216162-74216181 None:intergenic 10.0%
!!! ATGTATAAATAAATTTTTCA+AGG + chr3_2:74218263-74218282 Msa0424040:intron 10.0%
!!! TGTATAAATAAATTTTTCAA+GGG + chr3_2:74218264-74218283 Msa0424040:intron 10.0%
!!! CAATTTCTTTTAAATAATCA+AGG + chr3_2:74215313-74215332 Msa0424040:five_prime_UTR 15.0%
!!! AAAGTAAAATGGTTTTAATT+GGG - chr3_2:74215445-74215464 None:intergenic 15.0%
!!! TAAAGTAAAATGGTTTTAAT+TGG - chr3_2:74215446-74215465 None:intergenic 15.0%
!! CTTGTAAAAATAAAGTAAAA+TGG - chr3_2:74215456-74215475 None:intergenic 15.0%
!!! GTATATTTTACTCTATAATA+TGG - chr3_2:74215637-74215656 None:intergenic 15.0%
!! AATTAAAATGTTATATCACT+TGG + chr3_2:74215886-74215905 Msa0424040:intron 15.0%
!!! CTTTAAAATTTAACCAAATA+TGG + chr3_2:74216070-74216089 Msa0424040:intron 15.0%
!! AAATAACAATTTCTCATAAA+TGG - chr3_2:74216260-74216279 None:intergenic 15.0%
!! TAAAAAATAGAAAAACTCTA+GGG - chr3_2:74216933-74216952 None:intergenic 15.0%
!!! TATTCAATTTTCAAACTTAT+AGG + chr3_2:74216960-74216979 Msa0424040:intron 15.0%
!! TTCATAAAGAATCATTTATT+TGG + chr3_2:74217061-74217080 Msa0424040:intron 15.0%
!!! CTTTTTTTTTTTTTTTGAAC+CGG + chr3_2:74217699-74217718 Msa0424040:intron 15.0%
!!! TTTTTTTTTTTTTTTGAACC+GGG + chr3_2:74217700-74217719 Msa0424040:intron 15.0%
!! TATATTCATTTATCAAGATA+TGG + chr3_2:74218167-74218186 Msa0424040:intron 15.0%
!! TAAAAAAAGAATATCTCTTA+TGG + chr3_2:74218575-74218594 Msa0424040:CDS 15.0%
!! TCATTTATTAAAGAAAGACA+TGG - chr3_2:74215735-74215754 None:intergenic 20.0%
!!! TATATACTTACCTTTTTTTG+AGG + chr3_2:74215760-74215779 Msa0424040:intron 20.0%
!! AAAAGGAATATTACCATATT+TGG - chr3_2:74216086-74216105 None:intergenic 20.0%
!! AAAAAATAGAAAAACTCTAG+GGG - chr3_2:74216932-74216951 None:intergenic 20.0%
!! GTAAAAAATAGAAAAACTCT+AGG - chr3_2:74216934-74216953 None:intergenic 20.0%
!! GATTCTTTATGAAACAATAA+AGG - chr3_2:74217054-74217073 None:intergenic 20.0%
!! CTCTTGACTATTATTAATAA+CGG - chr3_2:74217368-74217387 None:intergenic 20.0%
!!! TTTCTATTTTTTCAAGCTTA+GGG - chr3_2:74217585-74217604 None:intergenic 20.0%
!! AAAAAATAGAAAGAAAGTTG+TGG + chr3_2:74217593-74217612 Msa0424040:intron 20.0%
!! CTTTAACACTCTTTATTATT+GGG + chr3_2:74217836-74217855 Msa0424040:intron 20.0%
!! AATTATGCAATGTAAAAGTA+TGG + chr3_2:74217897-74217916 Msa0424040:intron 20.0%
!! TTAAATACTTGTATCAAGTA+GGG - chr3_2:74218010-74218029 None:intergenic 20.0%
!! GAAATACTGTATATATCAAT+CGG - chr3_2:74218049-74218068 None:intergenic 20.0%
!!! TTAACAGTTTTTCATACAAT+AGG + chr3_2:74218302-74218321 Msa0424040:intron 20.0%
!!! TATTCTTTTTTTATCATCCA+CGG - chr3_2:74218568-74218587 None:intergenic 20.0%
!!! TTCCTACTAATTTTGTTTAT+TGG + chr3_2:74219195-74219214 Msa0424040:intron 20.0%
!!! AATAATTTTCAGACAAACAA+GGG - chr3_2:74219222-74219241 None:intergenic 20.0%
!!! AAATAATTTTCAGACAAACA+AGG - chr3_2:74219223-74219242 None:intergenic 20.0%
!!! AACTTATTCTTGTAACATTT+TGG - chr3_2:74219258-74219277 None:intergenic 20.0%
!! AGTCTTAGTATTAAATTCTA+CGG + chr3_2:74219559-74219578 Msa0424040:intron 20.0%
!!! ATTTTTTTCTCAAAAGAGAG+AGG + chr3_2:74215024-74215043 Msa0424040:five_prime_UTR 25.0%
!!! TTTTTTTCTCAAAAGAGAGA+GGG + chr3_2:74215025-74215044 Msa0424040:five_prime_UTR 25.0%
! TAGAGTAAAATATACCAAAG+TGG + chr3_2:74215642-74215661 Msa0424040:intron 25.0%
! ATTAAAGAAAGACATGGTAT+TGG - chr3_2:74215729-74215748 None:intergenic 25.0%
! AATATACTTGCCTCAAAAAA+AGG - chr3_2:74215773-74215792 None:intergenic 25.0%
! GTACAGAAAAAAATAGAGTT+TGG - chr3_2:74215800-74215819 None:intergenic 25.0%
! GAGAAATCAAGATAAGATTA+AGG - chr3_2:74216046-74216065 None:intergenic 25.0%
!! CAAACTCATCTTAATTCTTT+TGG + chr3_2:74216370-74216389 Msa0424040:intron 25.0%
!! CACTTTGTGTAGTAATATTT+TGG - chr3_2:74216582-74216601 None:intergenic 25.0%
! CAAAATATTACTACACAAAG+TGG + chr3_2:74216580-74216599 Msa0424040:intron 25.0%
! ATAGAAAAAAGTCATCAAAG+AGG - chr3_2:74216834-74216853 None:intergenic 25.0%
!!! TCTTTGATGACTTTTTTCTA+TGG + chr3_2:74216833-74216852 Msa0424040:intron 25.0%
!! TCTTTGTAGCTAATGAATTT+TGG - chr3_2:74217278-74217297 None:intergenic 25.0%
! CGTTATTAATAATAGTCAAG+AGG + chr3_2:74217366-74217385 Msa0424040:intron 25.0%
! TATTAATAATAGTCAAGAGG+TGG + chr3_2:74217369-74217388 Msa0424040:intron 25.0%
! TTAGGAGTAATGTTGTAATA+TGG + chr3_2:74217525-74217544 Msa0424040:intron 25.0%
!!! CAACTTGTATTTTAACACTA+AGG - chr3_2:74217551-74217570 None:intergenic 25.0%
!!! CTTTCTATTTTTTCAAGCTT+AGG - chr3_2:74217586-74217605 None:intergenic 25.0%
! CGATGAGTAATTGAAAAAAA+CGG + chr3_2:74217743-74217762 Msa0424040:intron 25.0%
! TGCCTATCATAAAAATGAAA+TGG + chr3_2:74217774-74217793 Msa0424040:intron 25.0%
!!! TGCCATTTCATTTTTATGAT+AGG - chr3_2:74217779-74217798 None:intergenic 25.0%
! GCTTTAACACTCTTTATTAT+TGG + chr3_2:74217835-74217854 Msa0424040:intron 25.0%
! CTTAAATACTTGTATCAAGT+AGG - chr3_2:74218011-74218030 None:intergenic 25.0%
! ATATACAGTATTTCATGTCA+CGG + chr3_2:74218055-74218074 Msa0424040:intron 25.0%
! TTGTATGAAAAACTGTTAAC+AGG - chr3_2:74218301-74218320 None:intergenic 25.0%
! AAAAAGAATATCTCTTATGG+AGG + chr3_2:74218578-74218597 Msa0424040:CDS 25.0%
!! CAACATTCTATGGTAATTTT+CGG - chr3_2:74218783-74218802 None:intergenic 25.0%
!! GAATGTTTTCTATAAGATAG+AGG + chr3_2:74219053-74219072 Msa0424040:intron 25.0%
!!! CATTATTCTGTTTCTATGTA+AGG - chr3_2:74219117-74219136 None:intergenic 25.0%
! GTCCAATAAACAAAATTAGT+AGG - chr3_2:74219200-74219219 None:intergenic 25.0%
! ATTAGAAATATGAAGACTTG+AGG + chr3_2:74219300-74219319 Msa0424040:intron 25.0%
!! ACCTTTAGGAATACTTTATT+CGG + chr3_2:74219350-74219369 Msa0424040:intron 25.0%
! TATAGAAGAATAAATCTGCT+TGG + chr3_2:74219971-74219990 Msa0424040:three_prime_UTR 25.0%
! ATAGAAGAATAAATCTGCTT+GGG + chr3_2:74219972-74219991 Msa0424040:three_prime_UTR 25.0%
!! ATAAAAACTACGCATGTTTT+CGG + chr3_2:74220022-74220041 Msa0424040:three_prime_UTR 25.0%
AGAGAGATTGTTAAACTAAG+TGG + chr3_2:74215069-74215088 Msa0424040:five_prime_UTR 30.0%
!!! AATTTTGTCAATGATGGACA+TGG - chr3_2:74215251-74215270 None:intergenic 30.0%
! GCTGTAAATTTTGTCAATGA+TGG - chr3_2:74215257-74215276 None:intergenic 30.0%
AAGATATTTCTTTCACTGGT+AGG - chr3_2:74215514-74215533 None:intergenic 30.0%
AGTGAAGATATTTCTTTCAC+TGG - chr3_2:74215518-74215537 None:intergenic 30.0%
AAATATACCAAAGTGGATAC+AGG + chr3_2:74215649-74215668 Msa0424040:intron 30.0%
GTAAGTTGCAGAAATAAACA+AGG + chr3_2:74215908-74215927 Msa0424040:intron 30.0%
TCATACTCAGGATCAAAATA+TGG - chr3_2:74215988-74216007 None:intergenic 30.0%
GATAAGATTAAGGTAAACCT+TGG - chr3_2:74216036-74216055 None:intergenic 30.0%
!!! ATTTGATGGTTTTAGGCAAA+AGG - chr3_2:74216103-74216122 None:intergenic 30.0%
CATAAAACGTGTGAATTTGA+TGG - chr3_2:74216117-74216136 None:intergenic 30.0%
AGCTCTGTTAAAAAAAGAGA+AGG - chr3_2:74216313-74216332 None:intergenic 30.0%
! ATTGGTTTCAGCTAAGATTA+AGG - chr3_2:74216476-74216495 None:intergenic 30.0%
AGATTGTGTTAAAAGGAGAT+CGG - chr3_2:74216513-74216532 None:intergenic 30.0%
CATGATCAGATTGTGTTAAA+AGG - chr3_2:74216520-74216539 None:intergenic 30.0%
TTTAACACAATCTGATCATG+AGG + chr3_2:74216520-74216539 Msa0424040:intron 30.0%
GCTTCAGTTTCTACTTTAAT+TGG + chr3_2:74216666-74216685 Msa0424040:intron 30.0%
AATGAAGTTTACCATCAAAG+AGG - chr3_2:74216722-74216741 None:intergenic 30.0%
AAACTTCATTTGTACTTTGC+AGG + chr3_2:74216732-74216751 Msa0424040:intron 30.0%
AACTTCATTTGTACTTTGCA+GGG + chr3_2:74216733-74216752 Msa0424040:intron 30.0%
!! TTTGATAGTGTTAACAAACC+TGG + chr3_2:74217131-74217150 Msa0424040:CDS 30.0%
ATCAGAAGATATGTAAGCTT+TGG - chr3_2:74217207-74217226 None:intergenic 30.0%
AAAGCTTACATATCTTCTGA+TGG + chr3_2:74217206-74217225 Msa0424040:CDS 30.0%
TCCCATATGAAATTTGAACA+GGG - chr3_2:74217307-74217326 None:intergenic 30.0%
TGTTCAAATTTCATATGGGA+CGG + chr3_2:74217307-74217326 Msa0424040:intron 30.0%
ATGGTAACCATTGAAAACTT+TGG + chr3_2:74217394-74217413 Msa0424040:intron 30.0%
! ATAACTGCCAAAGTTTTCAA+TGG - chr3_2:74217404-74217423 None:intergenic 30.0%
CTTACATGACACATTCATAT+TGG - chr3_2:74217458-74217477 None:intergenic 30.0%
! CAATGTTTGGTAACAAAGTT+CGG - chr3_2:74217652-74217671 None:intergenic 30.0%
ACACAGATATACACAATGTT+TGG - chr3_2:74217665-74217684 None:intergenic 30.0%
!! TTTTTCAATTACTCATCGCA+AGG - chr3_2:74217741-74217760 None:intergenic 30.0%
!! TAATAAAGAGTGTTAAAGCG+TGG - chr3_2:74217834-74217853 None:intergenic 30.0%
! TATGCAATGTAAAAGTATGG+TGG + chr3_2:74217900-74217919 Msa0424040:intron 30.0%
AACCATAGATCTCATTGAAA+AGG + chr3_2:74218109-74218128 Msa0424040:CDS 30.0%
! TTTTTCATACAATAGGCTCT+AGG + chr3_2:74218309-74218328 Msa0424040:intron 30.0%
ACAAAGAAGAAGTGAAGAAT+TGG + chr3_2:74218346-74218365 Msa0424040:CDS 30.0%
AATTACCATAGAATGTTGTG+AGG + chr3_2:74218785-74218804 Msa0424040:CDS 30.0%
! TTTTTCCTCACAACATTCTA+TGG - chr3_2:74218793-74218812 None:intergenic 30.0%
ATAGAATGTTGTGAGGAAAA+AGG + chr3_2:74218792-74218811 Msa0424040:CDS 30.0%
AGTCACACATAGTACTTAAA+TGG + chr3_2:74218985-74219004 Msa0424040:intron 30.0%
TTAAATGGTTCAAATGTCGA+GGG + chr3_2:74219000-74219019 Msa0424040:intron 30.0%
TATAAGATAGAGGTCATGAA+AGG + chr3_2:74219063-74219082 Msa0424040:intron 30.0%
! AGATACAGCTTTTCTCAATT+TGG + chr3_2:74219170-74219189 Msa0424040:intron 30.0%
TACAAGAATAAGTTCTCACT+TGG + chr3_2:74219264-74219283 Msa0424040:intron 30.0%
GTTCTCACTTGGATTAATTT+AGG + chr3_2:74219275-74219294 Msa0424040:intron 30.0%
AAAAGTTCTTTCACAAATCG+TGG - chr3_2:74219506-74219525 None:intergenic 30.0%
! GTATTAAATTCTACGGATTG+TGG + chr3_2:74219566-74219585 Msa0424040:intron 30.0%
TCTTAATGTCTTCTATGTGA+GGG + chr3_2:74219717-74219736 Msa0424040:CDS 30.0%
AACAATCATGCATCTTAGTT+TGG + chr3_2:74219914-74219933 Msa0424040:exon 30.0%
! GTAGTTTTTATAGCATTGTG+TGG - chr3_2:74220013-74220032 None:intergenic 30.0%
! ATCTTGTTTCTCTTGCAAAG+TGG - chr3_2:74215004-74215023 None:intergenic 35.0%
TTGGAGAATGATACTGATAG+AGG - chr3_2:74215224-74215243 None:intergenic 35.0%
! TTTTGTTCCTGTATCCACTT+TGG - chr3_2:74215659-74215678 None:intergenic 35.0%
TTGCTGAAATTCTCATACTC+AGG - chr3_2:74216000-74216019 None:intergenic 35.0%
AGATTAAGGTAAACCTTGGA+GGG - chr3_2:74216032-74216051 None:intergenic 35.0%
AAGATTAAGGTAAACCTTGG+AGG - chr3_2:74216033-74216052 None:intergenic 35.0%
!! CGTGTGAATTTGATGGTTTT+AGG - chr3_2:74216110-74216129 None:intergenic 35.0%
!!! ATACTTTTTTAAGGAGACCG+TGG + chr3_2:74216184-74216203 Msa0424040:intron 35.0%
GTAGAAACTGAAGCTGAATA+AGG - chr3_2:74216660-74216679 None:intergenic 35.0%
!! AAAAGAAGTGTCCTCTTTGA+TGG + chr3_2:74216708-74216727 Msa0424040:intron 35.0%
CCTTGATTAGTGTACAGTTA+TGG - chr3_2:74216781-74216800 None:intergenic 35.0%
CCATAACTGTACACTAATCA+AGG + chr3_2:74216778-74216797 Msa0424040:CDS 35.0%
!! TAGACTTCTAAAGTAGCTGA+TGG - chr3_2:74216882-74216901 None:intergenic 35.0%
! ATCAGCTACTTTAGAAGTCT+AGG + chr3_2:74216881-74216900 Msa0424040:intron 35.0%
TAAAAAGTGGTACTCACAGA+GGG - chr3_2:74217005-74217024 None:intergenic 35.0%
TTAAAAAGTGGTACTCACAG+AGG - chr3_2:74217006-74217025 None:intergenic 35.0%
ACAAGTGGCTACTTAAAAAG+TGG - chr3_2:74217018-74217037 None:intergenic 35.0%
TAACAAACCTGGAATTCTAC+TGG + chr3_2:74217142-74217161 Msa0424040:CDS 35.0%
! CTTTGGTGATTATGAAGTCA+AGG - chr3_2:74217190-74217209 None:intergenic 35.0%
TGCCCTGTTCAAATTTCATA+TGG + chr3_2:74217302-74217321 Msa0424040:intron 35.0%
GCCCTGTTCAAATTTCATAT+GGG + chr3_2:74217303-74217322 Msa0424040:intron 35.0%
GTCCCATATGAAATTTGAAC+AGG - chr3_2:74217308-74217327 None:intergenic 35.0%
GTTCAAATTTCATATGGGAC+GGG + chr3_2:74217308-74217327 Msa0424040:intron 35.0%
TAATAGTCAAGAGGTGGTAA+TGG + chr3_2:74217375-74217394 Msa0424040:intron 35.0%
TATGAGTCATACTCACTGAT+AGG - chr3_2:74217493-74217512 None:intergenic 35.0%
!!! GCATGAGTTTTAGACGAAAA+AGG + chr3_2:74217796-74217815 Msa0424040:intron 35.0%
!! GTTTTAGACGAAAAAGGAAG+AGG + chr3_2:74217802-74217821 Msa0424040:intron 35.0%
CACACAATCACACACATTTA+TGG + chr3_2:74217965-74217984 Msa0424040:intron 35.0%
! CACCTTTTCAATGAGATCTA+TGG - chr3_2:74218114-74218133 None:intergenic 35.0%
!!! TCTTCTTTGTTCTGGCTTTT+CGG - chr3_2:74218336-74218355 None:intergenic 35.0%
TCTTCACTTCTTCTTTGTTC+TGG - chr3_2:74218344-74218363 None:intergenic 35.0%
CATATAGCGATTGAGCTAAT+CGG + chr3_2:74218405-74218424 Msa0424040:CDS 35.0%
ATATAGCGATTGAGCTAATC+GGG + chr3_2:74218406-74218425 Msa0424040:CDS 35.0%
TGTGTCCTTTATGTCAATGA+TGG + chr3_2:74218531-74218550 Msa0424040:CDS 35.0%
TCGTACCATCATTGACATAA+AGG - chr3_2:74218539-74218558 None:intergenic 35.0%
! CAGCTCAATAACATTTTACG+TGG + chr3_2:74218603-74218622 Msa0424040:CDS 35.0%
! TAACATTTTACGTGGATGTG+AGG + chr3_2:74218611-74218630 Msa0424040:CDS 35.0%
ATCAATATGGGTGAAACTCA+TGG - chr3_2:74218670-74218689 None:intergenic 35.0%
TGAGTTTCACCCATATTGAT+AGG + chr3_2:74218670-74218689 Msa0424040:CDS 35.0%
! ACCAAATGTTGTTTGCTGAT+CGG + chr3_2:74218700-74218719 Msa0424040:CDS 35.0%
GATCGGGATTATGAAAGTTA+TGG + chr3_2:74218717-74218736 Msa0424040:CDS 35.0%
! ATTCTATGGTAATTTTCGGC+CGG - chr3_2:74218779-74218798 None:intergenic 35.0%
TTGTGAGGAAAAAGGATACT+CGG + chr3_2:74218800-74218819 Msa0424040:CDS 35.0%
CTTAAATGGTTCAAATGTCG+AGG + chr3_2:74218999-74219018 Msa0424040:intron 35.0%
GGAGGATTTGTGTATTCAAA+TGG + chr3_2:74219091-74219110 Msa0424040:intron 35.0%
ATATGAAGACTTGAGGAATG+TGG + chr3_2:74219307-74219326 Msa0424040:intron 35.0%
TATGAAGACTTGAGGAATGT+GGG + chr3_2:74219308-74219327 Msa0424040:intron 35.0%
AATGTTGATCGTGTACCTTT+AGG + chr3_2:74219336-74219355 Msa0424040:intron 35.0%
! GCCGAATAAAGTATTCCTAA+AGG - chr3_2:74219354-74219373 None:intergenic 35.0%
TATTCAAAGAAGAGTAAGCG+AGG + chr3_2:74219441-74219460 Msa0424040:CDS 35.0%
! ACAAGAATTCTGAGAGAGAA+TGG + chr3_2:74219649-74219668 Msa0424040:CDS 35.0%
CTCTTAATGTCTTCTATGTG+AGG + chr3_2:74219716-74219735 Msa0424040:CDS 35.0%
! GAAGCACTTCGTAAAGAAAT+CGG + chr3_2:74219775-74219794 Msa0424040:CDS 35.0%
AGAAATCGGTAAGACAATGA+TGG + chr3_2:74219789-74219808 Msa0424040:CDS 35.0%
AATGATGGTAGATGTGAAGA+AGG + chr3_2:74219804-74219823 Msa0424040:CDS 35.0%
!! TCTGGTTCTTTGTCATATGT+TGG - chr3_2:74219832-74219851 None:intergenic 35.0%
! GCTAAAACTAGCTTCTTCTT+TGG + chr3_2:74219865-74219884 Msa0424040:CDS 35.0%
! CTTCTTCTTTGGTAACTTGT+TGG + chr3_2:74219876-74219895 Msa0424040:CDS 35.0%
!! TCTTTGGTAACTTGTTGGAA+AGG + chr3_2:74219881-74219900 Msa0424040:CDS 35.0%
!! TAACTTGTTGGAAAGGTTCT+TGG + chr3_2:74219888-74219907 Msa0424040:CDS 35.0%
TTTCTCTTGCAAAGTGGTGT+GGG - chr3_2:74214998-74215017 None:intergenic 40.0%
AGATTCTCTACTTTCGACGT+TGG - chr3_2:74215099-74215118 None:intergenic 40.0%
ACCAGAGAAGCTGTTTAGAA+TGG + chr3_2:74215948-74215967 Msa0424040:exon 40.0%
TTAGAATGGCTGCAGTTTGT+TGG + chr3_2:74215962-74215981 Msa0424040:exon 40.0%
GAGTGAGACACTACATATGT+TGG - chr3_2:74216210-74216229 None:intergenic 40.0%
GTTAAAAGGAGATCGGAGTT+GGG - chr3_2:74216506-74216525 None:intergenic 40.0%
TGTTAAAAGGAGATCGGAGT+TGG - chr3_2:74216507-74216526 None:intergenic 40.0%
TATGGCCTCTATATGAGTTG+TGG + chr3_2:74216851-74216870 Msa0424040:intron 40.0%
CCAAACCACAACTCATATAG+AGG - chr3_2:74216859-74216878 None:intergenic 40.0%
CCTCTATATGAGTTGTGGTT+TGG + chr3_2:74216856-74216875 Msa0424040:intron 40.0%
GCTTACATATCTTCTGATGG+AGG + chr3_2:74217209-74217228 Msa0424040:CDS 40.0%
ACATATCTTCTGATGGAGGA+TGG + chr3_2:74217213-74217232 Msa0424040:CDS 40.0%
CTCATAGTGCAGTACAGTTT+AGG + chr3_2:74217507-74217526 Msa0424040:intron 40.0%
AGGTATTAAAACAGCACTCC+CGG - chr3_2:74217721-74217740 None:intergenic 40.0%
! AGAGTGTTAAAGCGTGGTAT+TGG - chr3_2:74217828-74217847 None:intergenic 40.0%
TTGGGTGAATGAATCAGTCT+AGG + chr3_2:74217854-74217873 Msa0424040:intron 40.0%
TGTGTTTGAAAAGAGAGAGC+AGG - chr3_2:74217949-74217968 None:intergenic 40.0%
TTTCATGTCACGGATCAACA+AGG + chr3_2:74218065-74218084 Msa0424040:CDS 40.0%
GTTTCTATCTAACTACCACG+TGG + chr3_2:74218189-74218208 Msa0424040:intron 40.0%
GAAGAAGTGAAGAATTGGTC+AGG + chr3_2:74218351-74218370 Msa0424040:CDS 40.0%
TGAAGAATTGGTCAGGCAAA+TGG + chr3_2:74218358-74218377 Msa0424040:CDS 40.0%
GAAGAATTGGTCAGGCAAAT+GGG + chr3_2:74218359-74218378 Msa0424040:CDS 40.0%
ATATCTCAGACAAGAGACCA+GGG - chr3_2:74218440-74218459 None:intergenic 40.0%
CTACAACCACGTTAAAATGG+AGG - chr3_2:74218479-74218498 None:intergenic 40.0%
CAGCTACAACCACGTTAAAA+TGG - chr3_2:74218482-74218501 None:intergenic 40.0%
! ATTTTACGTGGATGTGAGGA+TGG + chr3_2:74218615-74218634 Msa0424040:CDS 40.0%
ATGGAGAGAAAGTTGCTAGT+AGG + chr3_2:74218634-74218653 Msa0424040:CDS 40.0%
GTTTCACCCATATTGATAGG+CGG + chr3_2:74218673-74218692 Msa0424040:CDS 40.0%
GATCAGCAAACAACATTTGG+TGG - chr3_2:74218701-74218720 None:intergenic 40.0%
! CCAAATGTTGTTTGCTGATC+GGG + chr3_2:74218701-74218720 Msa0424040:CDS 40.0%
GTGACTGATAAGTGAACATG+CGG - chr3_2:74218971-74218990 None:intergenic 40.0%
GGAATACTTTATTCGGCACA+TGG + chr3_2:74219357-74219376 Msa0424040:intron 40.0%
TACTTTATTCGGCACATGGA+CGG + chr3_2:74219361-74219380 Msa0424040:CDS 40.0%
GATGCACACTTGATACAGAA+GGG + chr3_2:74219383-74219402 Msa0424040:CDS 40.0%
ATGCACACTTGATACAGAAG+GGG + chr3_2:74219384-74219403 Msa0424040:CDS 40.0%
ATACAGAAGGGGAGAAAGAA+AGG + chr3_2:74219395-74219414 Msa0424040:CDS 40.0%
TACAGAAGGGGAGAAAGAAA+GGG + chr3_2:74219396-74219415 Msa0424040:CDS 40.0%
TATCCTTTGCACACAACTCT+AGG - chr3_2:74219606-74219625 None:intergenic 40.0%
TTGTGTGCAAAGGATAGAGT+GGG + chr3_2:74219610-74219629 Msa0424040:CDS 40.0%
AGAATGGCCTAACAGTTTGT+AGG + chr3_2:74219665-74219684 Msa0424040:CDS 40.0%
GAATGGCCTAACAGTTTGTA+GGG + chr3_2:74219666-74219685 Msa0424040:CDS 40.0%
GTTTCTCTTGCAAAGTGGTG+TGG - chr3_2:74214999-74215018 None:intergenic 45.0%
! AATCTGCATCTGAGACACAC+AGG + chr3_2:74215114-74215133 Msa0424040:five_prime_UTR 45.0%
!! CAATGATGGACATGGAAGCT+TGG - chr3_2:74215243-74215262 None:intergenic 45.0%
GCCATTCTAAACAGCTTCTC+TGG - chr3_2:74215952-74215971 None:intergenic 45.0%
GCAACAAAATCAACCCTCCA+AGG + chr3_2:74216016-74216035 Msa0424040:CDS 45.0%
GACACTACATATGTTGGCCA+CGG - chr3_2:74216204-74216223 None:intergenic 45.0%
TCGGAGTTGGGTAGGTAAAT+TGG - chr3_2:74216494-74216513 None:intergenic 45.0%
ATGGCAACTAGCATTGTCCA+CGG - chr3_2:74216762-74216781 None:intergenic 45.0%
GGAGCAATGTGACAAACAAG+TGG - chr3_2:74217033-74217052 None:intergenic 45.0%
ACCTGGAATTCTACTGGAAG+TGG + chr3_2:74217148-74217167 Msa0424040:CDS 45.0%
ACCACTTCCAGTAGAATTCC+AGG - chr3_2:74217152-74217171 None:intergenic 45.0%
TTCTGATGGAGGATGGTTCA+TGG + chr3_2:74217220-74217239 Msa0424040:CDS 45.0%
ATGAATTCGAGTCTTCCACG+TGG - chr3_2:74218207-74218226 None:intergenic 45.0%
AATTGGTCAGGCAAATGGGT+TGG + chr3_2:74218363-74218382 Msa0424040:CDS 45.0%
! ATTGGTCAGGCAAATGGGTT+GGG + chr3_2:74218364-74218383 Msa0424040:CDS 45.0%
GATATCTCAGACAAGAGACC+AGG - chr3_2:74218441-74218460 None:intergenic 45.0%
AACCACGTTAAAATGGAGGC+TGG - chr3_2:74218475-74218494 None:intergenic 45.0%
CTGAAGTGTGGACTCATAAC+AGG + chr3_2:74218499-74218518 Msa0424040:CDS 45.0%
GGTGAAACTCATGGACAAAC+TGG - chr3_2:74218661-74218680 None:intergenic 45.0%
CCCGATCAGCAAACAACATT+TGG - chr3_2:74218704-74218723 None:intergenic 45.0%
ATGGAGTAACGACAACAGAC+AGG + chr3_2:74218736-74218755 Msa0424040:CDS 45.0%
TGGAGTAACGACAACAGACA+GGG + chr3_2:74218737-74218756 Msa0424040:CDS 45.0%
! GTAATTTTCGGCCGGAAAGA+GGG - chr3_2:74218771-74218790 None:intergenic 45.0%
TGAGGAAAAAGGATACTCGG+TGG + chr3_2:74218803-74218822 Msa0424040:CDS 45.0%
TTCCCATGCCACAATCTCAT+CGG + chr3_2:74218902-74218921 Msa0424040:CDS 45.0%
ATCCGATGAGATTGTGGCAT+GGG - chr3_2:74218907-74218926 None:intergenic 45.0%
GATGTACCTGCGATGCATAA+GGG - chr3_2:74218932-74218951 None:intergenic 45.0%
TGATGTACCTGCGATGCATA+AGG - chr3_2:74218933-74218952 None:intergenic 45.0%
TAGAGGTCATGAAAGGCTTG+TGG + chr3_2:74219070-74219089 Msa0424040:intron 45.0%
GGATGCACACTTGATACAGA+AGG + chr3_2:74219382-74219401 Msa0424040:CDS 45.0%
! ATTCTACGGATTGTGGACAC+AGG + chr3_2:74219573-74219592 Msa0424040:intron 45.0%
! TTCTACGGATTGTGGACACA+GGG + chr3_2:74219574-74219593 Msa0424040:intron 45.0%
GTTGTGTGCAAAGGATAGAG+TGG + chr3_2:74219609-74219628 Msa0424040:CDS 45.0%
TACCTGCCCTACAAACTGTT+AGG - chr3_2:74219675-74219694 None:intergenic 45.0%
! ATTAAGAGCTTGTTCCCCTC+TGG - chr3_2:74219704-74219723 None:intergenic 45.0%
TTCTATGTGAGGGATGCATC+AGG + chr3_2:74219727-74219746 Msa0424040:CDS 45.0%
TCTATGTGAGGGATGCATCA+GGG + chr3_2:74219728-74219747 Msa0424040:CDS 45.0%
!!! AAATATAAAATACTTTTTTA+AGG + chr3_2:74216175-74216194 Msa0424040:intron 5.0%
!!! TTTATTTTATTTTTGAAATA+CGG + chr3_2:74216339-74216358 Msa0424040:intron 5.0%
!! TTAAAATTAAAATGTTTAAT+TGG + chr3_2:74216624-74216643 Msa0424040:intron 5.0%
AAAGGAGATCGGAGTTGGGT+AGG - chr3_2:74216502-74216521 None:intergenic 50.0%
GATGGAGGATGGTTCATGGA+TGG + chr3_2:74217224-74217243 Msa0424040:CDS 50.0%
GGGACGGGACTGTTGTAAAA+TGG + chr3_2:74217323-74217342 Msa0424040:intron 50.0%
TGACCACATCTCCGACTACA+GGG - chr3_2:74217622-74217641 None:intergenic 50.0%
!! TTGGTCAGGCAAATGGGTTG+GGG + chr3_2:74218365-74218384 Msa0424040:CDS 50.0%
CGTTAAAATGGAGGCTGGCA+AGG - chr3_2:74218470-74218489 None:intergenic 50.0%
!! TGCCAGCCTCCATTTTAACG+TGG + chr3_2:74218470-74218489 Msa0424040:CDS 50.0%
ACGTGGTTGTAGCTGAAGTG+TGG + chr3_2:74218487-74218506 Msa0424040:CDS 50.0%
GTGGAGCCGCCTATCAATAT+GGG - chr3_2:74218682-74218701 None:intergenic 50.0%
! GGTAATTTTCGGCCGGAAAG+AGG - chr3_2:74218772-74218791 None:intergenic 50.0%
GATCCGATGAGATTGTGGCA+TGG - chr3_2:74218908-74218927 None:intergenic 50.0%
AGGTCATGAAAGGCTTGTGG+AGG + chr3_2:74219073-74219092 Msa0424040:intron 50.0%
GAGCCTAGAGTTGTGTGCAA+AGG + chr3_2:74219600-74219619 Msa0424040:CDS 50.0%
AGGGCAGGTATATCAACCAG+AGG + chr3_2:74219685-74219704 Msa0424040:CDS 50.0%
GGGCAGGTATATCAACCAGA+GGG + chr3_2:74219686-74219705 Msa0424040:CDS 50.0%
GGCAGGTATATCAACCAGAG+GGG + chr3_2:74219687-74219706 Msa0424040:CDS 50.0%
GACAAAGAACCAGAGACACG+AGG + chr3_2:74219838-74219857 Msa0424040:CDS 50.0%
AAGAACCAGAGACACGAGGA+TGG + chr3_2:74219842-74219861 Msa0424040:CDS 50.0%
AGAACCAGAGACACGAGGAT+GGG + chr3_2:74219843-74219862 Msa0424040:CDS 50.0%
TTGCAAAGTGGTGTGGGCGT+GGG - chr3_2:74214992-74215011 None:intergenic 55.0%
TGTACTTTGCAGGGTCTCCG+TGG + chr3_2:74216742-74216761 Msa0424040:intron 55.0%
TGGTACTCACAGAGGGCTAG+TGG - chr3_2:74216998-74217017 None:intergenic 55.0%
GTGACCACATCTCCGACTAC+AGG - chr3_2:74217623-74217642 None:intergenic 55.0%
! TGGGTTGGGGTGCATTCTGT+TGG + chr3_2:74218378-74218397 Msa0424040:CDS 55.0%
TCTCAGACAAGAGACCAGGG+CGG - chr3_2:74218437-74218456 None:intergenic 55.0%
TGATGGTACGAGACAAGCCG+TGG + chr3_2:74218548-74218567 Msa0424040:CDS 55.0%
GGTGGAGCCGCCTATCAATA+TGG - chr3_2:74218683-74218702 None:intergenic 55.0%
GGGAATGTCCTCCCTCTTTC+CGG + chr3_2:74218757-74218776 Msa0424040:CDS 55.0%
! ATTTTCGGCCGGAAAGAGGG+AGG - chr3_2:74218768-74218787 None:intergenic 55.0%
AGGGCGATCCGATGAGATTG+TGG - chr3_2:74218913-74218932 None:intergenic 55.0%
GGCCTAACAGTTTGTAGGGC+AGG + chr3_2:74219670-74219689 Msa0424040:CDS 55.0%
GGATGCATCAGGGAACTCAG+TGG + chr3_2:74219738-74219757 Msa0424040:CDS 55.0%
TTAGCCCATCCTCGTGTCTC+TGG - chr3_2:74219850-74219869 None:intergenic 55.0%
TGTGGGCGTGGGGTTAATGG+TGG - chr3_2:74214981-74215000 None:intergenic 60.0%
TGGTGTGGGCGTGGGGTTAA+TGG - chr3_2:74214984-74215003 None:intergenic 60.0%
TGCAAAGTGGTGTGGGCGTG+GGG - chr3_2:74214991-74215010 None:intergenic 60.0%
CTTGCAAAGTGGTGTGGGCG+TGG - chr3_2:74214993-74215012 None:intergenic 60.0%
AGTTGTGGCCGCCCTGTAGT+CGG + chr3_2:74217608-74217627 Msa0424040:intron 60.0%
CCACATCTCCGACTACAGGG+CGG - chr3_2:74217619-74217638 None:intergenic 60.0%
GGATCGCCCTTATGCATCGC+AGG + chr3_2:74218923-74218942 Msa0424040:CDS 60.0%
CCGCCCTGTAGTCGGAGATG+TGG + chr3_2:74217616-74217635 Msa0424040:intron 65.0%
CTAATCGGGAGAGACCGCCC+TGG + chr3_2:74218420-74218439 Msa0424040:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 74214922 74220051 74214922 ID=Msa0424040;Name=Msa0424040
chr3_2 mRNA 74214922 74220051 74214922 ID=Msa0424040-mRNA-1;Parent=Msa0424040;Name=Msa0424040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=366|1|1|1|0.75|0.66|9|136|448
chr3_2 exon 74214922 74215135 74214922 ID=Msa0424040-mRNA-1:exon:18674;Parent=Msa0424040-mRNA-1
chr3_2 exon 74215231 74215334 74215231 ID=Msa0424040-mRNA-1:exon:18675;Parent=Msa0424040-mRNA-1
chr3_2 exon 74215919 74216037 74215919 ID=Msa0424040-mRNA-1:exon:18676;Parent=Msa0424040-mRNA-1
chr3_2 exon 74216754 74216799 74216754 ID=Msa0424040-mRNA-1:exon:18677;Parent=Msa0424040-mRNA-1
chr3_2 exon 74217131 74217245 74217131 ID=Msa0424040-mRNA-1:exon:18678;Parent=Msa0424040-mRNA-1
chr3_2 exon 74218063 74218130 74218063 ID=Msa0424040-mRNA-1:exon:18679;Parent=Msa0424040-mRNA-1
chr3_2 exon 74218324 74218944 74218324 ID=Msa0424040-mRNA-1:exon:18680;Parent=Msa0424040-mRNA-1
chr3_2 exon 74219358 74219462 74219358 ID=Msa0424040-mRNA-1:exon:18681;Parent=Msa0424040-mRNA-1
chr3_2 exon 74219595 74220051 74219595 ID=Msa0424040-mRNA-1:exon:18682;Parent=Msa0424040-mRNA-1
chr3_2 five_prime_UTR 74214922 74215135 74214922 ID=Msa0424040-mRNA-1:five_prime_utr;Parent=Msa0424040-mRNA-1
chr3_2 five_prime_UTR 74215231 74215334 74215231 ID=Msa0424040-mRNA-1:five_prime_utr;Parent=Msa0424040-mRNA-1
chr3_2 five_prime_UTR 74215919 74215966 74215919 ID=Msa0424040-mRNA-1:five_prime_utr;Parent=Msa0424040-mRNA-1
chr3_2 CDS 74215967 74216037 74215967 ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1
chr3_2 CDS 74216754 74216799 74216754 ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1
chr3_2 CDS 74217131 74217245 74217131 ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1
chr3_2 CDS 74218063 74218130 74218063 ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1
chr3_2 CDS 74218324 74218944 74218324 ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1
chr3_2 CDS 74219358 74219462 74219358 ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1
chr3_2 CDS 74219595 74219915 74219595 ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1
chr3_2 three_prime_UTR 74219916 74220051 74219916 ID=Msa0424040-mRNA-1:three_prime_utr;Parent=Msa0424040-mRNA-1
Gene Sequence

>Msa0424040

ATGGCTGCAGTTTGTTGGCCATATTTTGATCCTGAGTATGAGAATTTCAGCAACAAAATCAACCCTCCAAGGGTCTCCGTGGACAATGCTAGTTGCCATAACTGTACACTAATCAAGTTTGATAGTGTTAACAAACCTGGAATTCTACTGGAAGTGGTGCAAATCTTGACAGACCTTGACTTCATAATCACCAAAGCTTACATATCTTCTGATGGAGGATGGTTCATGGATGTATTTCATGTCACGGATCAACAAGGAAAAAAGATAACAGATAGCAAAACCATAGATCTCATTGAAAAGGCTCTAGGACCGAAAAGCCAGAACAAAGAAGAAGTGAAGAATTGGTCAGGCAAATGGGTTGGGGTGCATTCTGTTGGTGATCATATAGCGATTGAGCTAATCGGGAGAGACCGCCCTGGTCTCTTGTCTGAGATATCAGCTGTCCTTGCCAGCCTCCATTTTAACGTGGTTGTAGCTGAAGTGTGGACTCATAACAGGAGAATAGCTTGTGTCCTTTATGTCAATGATGGTACGAGACAAGCCGTGGATGATAAAAAAAGAATATCTCTTATGGAGGAGCAGCTCAATAACATTTTACGTGGATGTGAGGATGGAGAGAAAGTTGCTAGTAGGACCAGTTTGTCCATGAGTTTCACCCATATTGATAGGCGGCTCCACCAAATGTTGTTTGCTGATCGGGATTATGAAAGTTATGGAGTAACGACAACAGACAGGGAATGTCCTCCCTCTTTCCGGCCGAAAATTACCATAGAATGTTGTGAGGAAAAAGGATACTCGGTGGTGAATGTCAGATGCAAAGATCGCGCAAAACTCATGTTTGACATTGTTTGCACTCTTACTGATATGCAATATGTTGTTTCCCATGCCACAATCTCATCGGATCGCCCTTATGCATCGCAGGAATACTTTATTCGGCACATGGACGGATGCACACTTGATACAGAAGGGGAGAAAGAAAGGGTCATCAAATGCATTGAAGCTGCTATTCAAAGAAGAGTAAGCGAGGGTGTGAGCCTAGAGTTGTGTGCAAAGGATAGAGTGGGATTGCTCTCTGAAGTAACAAGAATTCTGAGAGAGAATGGCCTAACAGTTTGTAGGGCAGGTATATCAACCAGAGGGGAACAAGCTCTTAATGTCTTCTATGTGAGGGATGCATCAGGGAACTCAGTGGACATGAAGACTATAGAAGCACTTCGTAAAGAAATCGGTAAGACAATGATGGTAGATGTGAAGAAGGTACCAACATATGACAAAGAACCAGAGACACGAGGATGGGCTAAAACTAGCTTCTTCTTTGGTAACTTGTTGGAAAGGTTCTTGGCTTAA

Protein sequence

>Msa0424040

MAAVCWPYFDPEYENFSNKINPPRVSVDNASCHNCTLIKFDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDLIEKALGPKSQNKEEVKNWSGKWVGVHSVGDHIAIELIGRDRPGLLSEISAVLASLHFNVVVAEVWTHNRRIACVLYVNDGTRQAVDDKKRISLMEEQLNNILRGCEDGEKVASRTSLSMSFTHIDRRLHQMLFADRDYESYGVTTTDRECPPSFRPKITIECCEEKGYSVVNVRCKDRAKLMFDIVCTLTDMQYVVSHATISSDRPYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVCRAGISTRGEQALNVFYVRDASGNSVDMKTIEALRKEIGKTMMVDVKKVPTYDKEPETRGWAKTSFFFGNLLERFLA*