Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424040 | XP_013461355.1 | 96.652 | 448 | 15 | 0 | 1 | 448 | 1 | 448 | 0.0 | 897 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424040 | sp|O49285|ACR3_ARATH | 72.907 | 454 | 114 | 4 | 1 | 447 | 1 | 452 | 0.0 | 679 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424040 | A0A072VB68 | 96.652 | 448 | 15 | 0 | 1 | 448 | 1 | 448 | 0.0 | 897 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0052640 | Msa0424040 | 0.804903 | 1.727686e-49 | -8.615850e-47 |
Msa0052770 | Msa0424040 | 0.817288 | 3.564204e-52 | -8.615850e-47 |
Msa0374750 | Msa0424040 | 0.901964 | 1.571122e-78 | -8.615850e-47 |
Msa0424040 | Msa0470960 | 0.882530 | 9.641840e-71 | -8.615850e-47 |
Msa0424040 | Msa0632870 | 0.810505 | 1.114699e-50 | -8.615850e-47 |
Msa0424040 | Msa0795920 | 0.817338 | 3.473218e-52 | -8.615850e-47 |
Msa0424040 | Msa0982430 | 0.897323 | 1.571070e-76 | -8.615850e-47 |
Msa0424040 | Msa1132890 | 0.804610 | 1.988608e-49 | -8.615850e-47 |
Msa0424040 | Msa1173140 | 0.818292 | 2.115454e-52 | -8.615850e-47 |
Msa0267310 | Msa0424040 | 0.804142 | 2.489986e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424040 | MtrunA17_Chr3g0125661 | 96.652 | 448 | 15 | 0 | 1 | 448 | 1 | 448 | 0.0 | 897 |
Msa0424040 | MtrunA17_Chr1g0159541 | 81.938 | 454 | 74 | 6 | 1 | 447 | 1 | 453 | 0.0 | 754 |
Msa0424040 | MtrunA17_Chr7g0222461 | 53.604 | 444 | 189 | 9 | 9 | 447 | 10 | 441 | 5.52e-155 | 447 |
Msa0424040 | MtrunA17_Chr5g0420221 | 53.811 | 433 | 186 | 6 | 8 | 438 | 16 | 436 | 7.24e-155 | 446 |
Msa0424040 | MtrunA17_Chr7g0224571 | 48.984 | 443 | 213 | 7 | 9 | 446 | 1 | 435 | 1.24e-140 | 410 |
Msa0424040 | MtrunA17_Chr4g0056741 | 49.161 | 417 | 191 | 6 | 6 | 421 | 3 | 399 | 1.35e-132 | 389 |
Msa0424040 | MtrunA17_Chr5g0398581 | 45.657 | 449 | 217 | 8 | 6 | 447 | 3 | 431 | 3.56e-129 | 380 |
Msa0424040 | MtrunA17_Chr5g0400941 | 46.083 | 434 | 211 | 9 | 1 | 415 | 1 | 430 | 4.86e-127 | 377 |
Msa0424040 | MtrunA17_Chr4g0054261 | 40.421 | 428 | 235 | 6 | 7 | 415 | 26 | 452 | 6.06e-109 | 331 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0424040 | AT1G76990.4 | 72.907 | 454 | 114 | 4 | 1 | 447 | 1 | 452 | 0.0 | 679 |
Msa0424040 | AT1G76990.5 | 72.907 | 454 | 114 | 4 | 1 | 447 | 1 | 452 | 0.0 | 679 |
Msa0424040 | AT1G76990.2 | 72.907 | 454 | 114 | 4 | 1 | 447 | 1 | 452 | 0.0 | 679 |
Msa0424040 | AT1G76990.3 | 72.907 | 454 | 114 | 4 | 1 | 447 | 1 | 452 | 0.0 | 679 |
Msa0424040 | AT1G76990.1 | 72.907 | 454 | 114 | 4 | 1 | 447 | 1 | 452 | 0.0 | 679 |
Msa0424040 | AT1G69040.1 | 51.936 | 439 | 200 | 5 | 9 | 444 | 7 | 437 | 1.93e-148 | 430 |
Msa0424040 | AT1G69040.2 | 51.936 | 439 | 200 | 5 | 9 | 444 | 11 | 441 | 3.53e-148 | 430 |
Msa0424040 | AT2G03730.2 | 50.000 | 452 | 208 | 8 | 4 | 445 | 3 | 446 | 2.83e-144 | 420 |
Msa0424040 | AT2G03730.1 | 50.000 | 452 | 208 | 8 | 4 | 445 | 3 | 446 | 2.83e-144 | 420 |
Msa0424040 | AT5G25320.1 | 47.903 | 453 | 204 | 9 | 1 | 422 | 1 | 452 | 7.87e-144 | 420 |
Msa0424040 | AT3G01990.7 | 51.724 | 406 | 176 | 8 | 10 | 410 | 17 | 407 | 1.15e-135 | 397 |
Msa0424040 | AT3G01990.5 | 51.724 | 406 | 176 | 8 | 10 | 410 | 17 | 407 | 1.15e-135 | 397 |
Msa0424040 | AT3G01990.10 | 51.724 | 406 | 176 | 8 | 10 | 410 | 3 | 393 | 1.41e-135 | 397 |
Msa0424040 | AT3G01990.1 | 51.724 | 406 | 176 | 8 | 10 | 410 | 3 | 393 | 1.41e-135 | 397 |
Msa0424040 | AT3G01990.6 | 51.724 | 406 | 176 | 8 | 10 | 410 | 17 | 407 | 1.65e-135 | 397 |
Msa0424040 | AT3G01990.11 | 51.724 | 406 | 176 | 8 | 10 | 410 | 3 | 393 | 2.95e-135 | 396 |
Msa0424040 | AT5G25320.3 | 47.585 | 414 | 187 | 7 | 38 | 422 | 1 | 413 | 8.60e-128 | 378 |
Msa0424040 | AT1G12420.1 | 48.077 | 416 | 196 | 8 | 8 | 422 | 6 | 402 | 4.46e-121 | 360 |
Msa0424040 | AT4G22780.1 | 48.507 | 402 | 183 | 7 | 12 | 410 | 9 | 389 | 9.89e-121 | 360 |
Msa0424040 | AT4G22780.2 | 48.507 | 402 | 183 | 7 | 12 | 410 | 9 | 389 | 9.89e-121 | 360 |
Msa0424040 | AT5G65890.1 | 40.860 | 465 | 248 | 7 | 7 | 446 | 8 | 470 | 3.85e-111 | 336 |
Msa0424040 | AT5G65890.3 | 40.860 | 465 | 248 | 7 | 7 | 446 | 8 | 470 | 3.85e-111 | 336 |
Msa0424040 | AT5G25320.2 | 46.113 | 373 | 170 | 8 | 1 | 342 | 1 | 373 | 1.79e-108 | 326 |
Msa0424040 | AT3G01990.4 | 50.437 | 343 | 150 | 8 | 10 | 347 | 17 | 344 | 1.35e-106 | 320 |
Msa0424040 | AT3G01990.9 | 50.437 | 343 | 150 | 8 | 10 | 347 | 3 | 330 | 1.50e-106 | 319 |
Msa0424040 | AT3G01990.2 | 50.888 | 338 | 146 | 8 | 10 | 342 | 17 | 339 | 2.56e-106 | 319 |
Msa0424040 | AT1G12420.2 | 46.552 | 348 | 167 | 7 | 76 | 422 | 1 | 330 | 3.77e-93 | 286 |
Msa0424040 | AT5G65890.4 | 38.810 | 420 | 230 | 7 | 52 | 446 | 1 | 418 | 1.21e-91 | 284 |
Msa0424040 | AT5G65890.2 | 38.810 | 420 | 230 | 7 | 52 | 446 | 1 | 418 | 1.21e-91 | 284 |
Msa0424040 | AT3G01990.3 | 48.896 | 317 | 142 | 8 | 10 | 321 | 17 | 318 | 1.44e-87 | 270 |
Msa0424040 | AT3G01990.8 | 48.896 | 317 | 142 | 8 | 10 | 321 | 3 | 304 | 1.90e-87 | 269 |
Msa0424040 | AT5G65890.5 | 36.994 | 346 | 194 | 6 | 123 | 446 | 13 | 356 | 2.94e-69 | 224 |
Find 130 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCACTTCTTCTTTGTTC+TGG | 0.217028 | 3_2:-74218341 | None:intergenic |
TGGTGTGGGCGTGGGGTTAA+TGG | 0.246618 | 3_2:-74214981 | None:intergenic |
CCAAATGTTGTTTGCTGATC+GGG | 0.257041 | 3_2:+74218701 | Msa0424040:CDS |
TAACTTGTTGGAAAGGTTCT+TGG | 0.291999 | 3_2:+74219888 | Msa0424040:CDS |
ACCTTTAGGAATACTTTATT+CGG | 0.293495 | 3_2:+74219350 | Msa0424040:intron |
AACAATCATGCATCTTAGTT+TGG | 0.296195 | 3_2:+74219914 | Msa0424040:exon |
GGTGGAGCCGCCTATCAATA+TGG | 0.298908 | 3_2:-74218680 | None:intergenic |
GGGAATGTCCTCCCTCTTTC+CGG | 0.308334 | 3_2:+74218757 | Msa0424040:CDS |
GCTAAAACTAGCTTCTTCTT+TGG | 0.325528 | 3_2:+74219865 | Msa0424040:CDS |
ATTGGTCAGGCAAATGGGTT+GGG | 0.336152 | 3_2:+74218364 | Msa0424040:CDS |
CAGCTACAACCACGTTAAAA+TGG | 0.336988 | 3_2:-74218479 | None:intergenic |
TCATACTCAGGATCAAAATA+TGG | 0.343119 | 3_2:-74215985 | None:intergenic |
CTTCTTCTTTGGTAACTTGT+TGG | 0.350472 | 3_2:+74219876 | Msa0424040:CDS |
ATAGAATGTTGTGAGGAAAA+AGG | 0.357579 | 3_2:+74218792 | Msa0424040:CDS |
ACCACTTCCAGTAGAATTCC+AGG | 0.366064 | 3_2:-74217149 | None:intergenic |
CCCGATCAGCAAACAACATT+TGG | 0.373612 | 3_2:-74218701 | None:intergenic |
CATATAGCGATTGAGCTAAT+CGG | 0.383863 | 3_2:+74218405 | Msa0424040:CDS |
ACAAAGAAGAAGTGAAGAAT+TGG | 0.384276 | 3_2:+74218346 | Msa0424040:CDS |
CTTGCAAAGTGGTGTGGGCG+TGG | 0.401349 | 3_2:-74214990 | None:intergenic |
TTGCAAAGTGGTGTGGGCGT+GGG | 0.407315 | 3_2:-74214989 | None:intergenic |
TTAGCCCATCCTCGTGTCTC+TGG | 0.409686 | 3_2:-74219847 | None:intergenic |
CTGAAGTGTGGACTCATAAC+AGG | 0.416112 | 3_2:+74218499 | Msa0424040:CDS |
ATCAGAAGATATGTAAGCTT+TGG | 0.416198 | 3_2:-74217204 | None:intergenic |
TGAGTTTCACCCATATTGAT+AGG | 0.418165 | 3_2:+74218670 | Msa0424040:CDS |
TGAAGAATTGGTCAGGCAAA+TGG | 0.419920 | 3_2:+74218358 | Msa0424040:CDS |
TCTGGTTCTTTGTCATATGT+TGG | 0.422147 | 3_2:-74219829 | None:intergenic |
CCTTGATTAGTGTACAGTTA+TGG | 0.426480 | 3_2:-74216778 | None:intergenic |
TCGTACCATCATTGACATAA+AGG | 0.431202 | 3_2:-74218536 | None:intergenic |
TTCTGATGGAGGATGGTTCA+TGG | 0.433562 | 3_2:+74217220 | Msa0424040:CDS |
TTCTATGTGAGGGATGCATC+AGG | 0.435247 | 3_2:+74219727 | Msa0424040:CDS |
TTGCTGAAATTCTCATACTC+AGG | 0.439597 | 3_2:-74215997 | None:intergenic |
GAAGCACTTCGTAAAGAAAT+CGG | 0.445977 | 3_2:+74219775 | Msa0424040:CDS |
GCCATTCTAAACAGCTTCTC+TGG | 0.446469 | 3_2:-74215949 | None:intergenic |
TTAGAATGGCTGCAGTTTGT+TGG | 0.449593 | 3_2:+74215962 | Msa0424040:exon |
GGTGAAACTCATGGACAAAC+TGG | 0.453115 | 3_2:-74218658 | None:intergenic |
AACCATAGATCTCATTGAAA+AGG | 0.459867 | 3_2:+74218109 | Msa0424040:CDS |
GATCGGGATTATGAAAGTTA+TGG | 0.463149 | 3_2:+74218717 | Msa0424040:CDS |
ATTAAGAGCTTGTTCCCCTC+TGG | 0.467903 | 3_2:-74219701 | None:intergenic |
AGAATGGCCTAACAGTTTGT+AGG | 0.468609 | 3_2:+74219665 | Msa0424040:CDS |
ATACAGAAGGGGAGAAAGAA+AGG | 0.470876 | 3_2:+74219395 | Msa0424040:CDS |
GGCCTAACAGTTTGTAGGGC+AGG | 0.474532 | 3_2:+74219670 | Msa0424040:CDS |
TCTTTGGTAACTTGTTGGAA+AGG | 0.475792 | 3_2:+74219881 | Msa0424040:CDS |
ACCAAATGTTGTTTGCTGAT+CGG | 0.476294 | 3_2:+74218700 | Msa0424040:CDS |
TAACAAACCTGGAATTCTAC+TGG | 0.480298 | 3_2:+74217142 | Msa0424040:CDS |
ATCAATATGGGTGAAACTCA+TGG | 0.480529 | 3_2:-74218667 | None:intergenic |
GTTTCTCTTGCAAAGTGGTG+TGG | 0.483534 | 3_2:-74214996 | None:intergenic |
TTTCTCTTGCAAAGTGGTGT+GGG | 0.484468 | 3_2:-74214995 | None:intergenic |
ATAGAAGAATAAATCTGCTT+GGG | 0.484707 | 3_2:+74219972 | Msa0424040:three_prime_UTR |
ACCAGAGAAGCTGTTTAGAA+TGG | 0.486693 | 3_2:+74215948 | Msa0424040:exon |
ATATAGCGATTGAGCTAATC+GGG | 0.490571 | 3_2:+74218406 | Msa0424040:CDS |
GAAGAAGTGAAGAATTGGTC+AGG | 0.491176 | 3_2:+74218351 | Msa0424040:CDS |
TATAGAAGAATAAATCTGCT+TGG | 0.491273 | 3_2:+74219971 | Msa0424040:three_prime_UTR |
AATTGGTCAGGCAAATGGGT+TGG | 0.499259 | 3_2:+74218363 | Msa0424040:CDS |
ACAAGAATTCTGAGAGAGAA+TGG | 0.499775 | 3_2:+74219649 | Msa0424040:CDS |
TGGGTTGGGGTGCATTCTGT+TGG | 0.500255 | 3_2:+74218378 | Msa0424040:CDS |
CCATAACTGTACACTAATCA+AGG | 0.500495 | 3_2:+74216778 | Msa0424040:CDS |
TACTTTATTCGGCACATGGA+CGG | 0.504584 | 3_2:+74219361 | Msa0424040:CDS |
ATGGAGAGAAAGTTGCTAGT+AGG | 0.510505 | 3_2:+74218634 | Msa0424040:CDS |
TGATGTACCTGCGATGCATA+AGG | 0.510772 | 3_2:-74218930 | None:intergenic |
TGCAAAGTGGTGTGGGCGTG+GGG | 0.511852 | 3_2:-74214988 | None:intergenic |
ATCCGATGAGATTGTGGCAT+GGG | 0.515862 | 3_2:-74218904 | None:intergenic |
GAAGAATTGGTCAGGCAAAT+GGG | 0.517093 | 3_2:+74218359 | Msa0424040:CDS |
TGTGGGCGTGGGGTTAATGG+TGG | 0.517592 | 3_2:-74214978 | None:intergenic |
ACCTGGAATTCTACTGGAAG+TGG | 0.521746 | 3_2:+74217148 | Msa0424040:CDS |
CGTTAAAATGGAGGCTGGCA+AGG | 0.523869 | 3_2:-74218467 | None:intergenic |
TGTGTCCTTTATGTCAATGA+TGG | 0.524064 | 3_2:+74218531 | Msa0424040:CDS |
GTGGAGCCGCCTATCAATAT+GGG | 0.526124 | 3_2:-74218679 | None:intergenic |
TATCCTTTGCACACAACTCT+AGG | 0.530398 | 3_2:-74219603 | None:intergenic |
TTTGATAGTGTTAACAAACC+TGG | 0.530560 | 3_2:+74217131 | Msa0424040:CDS |
AAGATTAAGGTAAACCTTGG+AGG | 0.533637 | 3_2:-74216030 | None:intergenic |
GATCAGCAAACAACATTTGG+TGG | 0.537075 | 3_2:-74218698 | None:intergenic |
ATGGAGTAACGACAACAGAC+AGG | 0.537588 | 3_2:+74218736 | Msa0424040:CDS |
AGAGAGATTGTTAAACTAAG+TGG | 0.538851 | 3_2:+74215069 | Msa0424040:five_prime_UTR |
AAAGCTTACATATCTTCTGA+TGG | 0.539350 | 3_2:+74217206 | Msa0424040:CDS |
GTTGTGTGCAAAGGATAGAG+TGG | 0.544908 | 3_2:+74219609 | Msa0424040:CDS |
ACATATCTTCTGATGGAGGA+TGG | 0.557362 | 3_2:+74217213 | Msa0424040:CDS |
GAATGGCCTAACAGTTTGTA+GGG | 0.559276 | 3_2:+74219666 | Msa0424040:CDS |
TTGTGTGCAAAGGATAGAGT+GGG | 0.560363 | 3_2:+74219610 | Msa0424040:CDS |
CAATGATGGACATGGAAGCT+TGG | 0.560378 | 3_2:-74215240 | None:intergenic |
GATATCTCAGACAAGAGACC+AGG | 0.560821 | 3_2:-74218438 | None:intergenic |
TTGGTCAGGCAAATGGGTTG+GGG | 0.568849 | 3_2:+74218365 | Msa0424040:CDS |
CTCTTAATGTCTTCTATGTG+AGG | 0.569159 | 3_2:+74219716 | Msa0424040:CDS |
AAGAACCAGAGACACGAGGA+TGG | 0.572425 | 3_2:+74219842 | Msa0424040:CDS |
AGAAATCGGTAAGACAATGA+TGG | 0.575183 | 3_2:+74219789 | Msa0424040:CDS |
GCAACAAAATCAACCCTCCA+AGG | 0.576070 | 3_2:+74216016 | Msa0424040:CDS |
GGAATACTTTATTCGGCACA+TGG | 0.576960 | 3_2:+74219357 | Msa0424040:intron |
GGATGCACACTTGATACAGA+AGG | 0.577234 | 3_2:+74219382 | Msa0424040:CDS |
AATGATGGTAGATGTGAAGA+AGG | 0.579827 | 3_2:+74219804 | Msa0424040:CDS |
AACCACGTTAAAATGGAGGC+TGG | 0.580495 | 3_2:-74218472 | None:intergenic |
CTTTGGTGATTATGAAGTCA+AGG | 0.580969 | 3_2:-74217187 | None:intergenic |
AGATTAAGGTAAACCTTGGA+GGG | 0.581667 | 3_2:-74216029 | None:intergenic |
TTCCCATGCCACAATCTCAT+CGG | 0.582164 | 3_2:+74218902 | Msa0424040:CDS |
AGGGCGATCCGATGAGATTG+TGG | 0.584876 | 3_2:-74218910 | None:intergenic |
AACATCGTATCTACAAACAT+TGG | 0.588230 | 3_2:+74214910 | None:intergenic |
GGATCGCCCTTATGCATCGC+AGG | 0.593884 | 3_2:+74218923 | Msa0424040:CDS |
ATCTTGTTTCTCTTGCAAAG+TGG | 0.600008 | 3_2:-74215001 | None:intergenic |
TACCTGCCCTACAAACTGTT+AGG | 0.606101 | 3_2:-74219672 | None:intergenic |
ATATACAGTATTTCATGTCA+CGG | 0.612062 | 3_2:+74218055 | Msa0424040:intron |
TCTTAATGTCTTCTATGTGA+GGG | 0.617321 | 3_2:+74219717 | Msa0424040:CDS |
GGGCAGGTATATCAACCAGA+GGG | 0.617488 | 3_2:+74219686 | Msa0424040:CDS |
GATGTACCTGCGATGCATAA+GGG | 0.618291 | 3_2:-74218929 | None:intergenic |
GCTTACATATCTTCTGATGG+AGG | 0.624587 | 3_2:+74217209 | Msa0424040:CDS |
TACAGAAGGGGAGAAAGAAA+GGG | 0.629110 | 3_2:+74219396 | Msa0424040:CDS |
AGATTCTCTACTTTCGACGT+TGG | 0.629510 | 3_2:-74215096 | None:intergenic |
CTAATCGGGAGAGACCGCCC+TGG | 0.632484 | 3_2:+74218420 | Msa0424040:CDS |
GATGCACACTTGATACAGAA+GGG | 0.635196 | 3_2:+74219383 | Msa0424040:CDS |
AGAACCAGAGACACGAGGAT+GGG | 0.635874 | 3_2:+74219843 | Msa0424040:CDS |
TGTACTTTGCAGGGTCTCCG+TGG | 0.635916 | 3_2:+74216742 | Msa0424040:intron |
TCTATGTGAGGGATGCATCA+GGG | 0.636872 | 3_2:+74219728 | Msa0424040:CDS |
TGATGGTACGAGACAAGCCG+TGG | 0.642205 | 3_2:+74218548 | Msa0424040:CDS |
ACGTGGTTGTAGCTGAAGTG+TGG | 0.647683 | 3_2:+74218487 | Msa0424040:CDS |
GATCCGATGAGATTGTGGCA+TGG | 0.649683 | 3_2:-74218905 | None:intergenic |
GTAAGTTGCAGAAATAAACA+AGG | 0.653405 | 3_2:+74215908 | Msa0424040:intron |
GATGGAGGATGGTTCATGGA+TGG | 0.659799 | 3_2:+74217224 | Msa0424040:CDS |
CTACAACCACGTTAAAATGG+AGG | 0.661407 | 3_2:-74218476 | None:intergenic |
TTTCATGTCACGGATCAACA+AGG | 0.661900 | 3_2:+74218065 | Msa0424040:CDS |
AATTACCATAGAATGTTGTG+AGG | 0.670161 | 3_2:+74218785 | Msa0424040:CDS |
ATGCACACTTGATACAGAAG+GGG | 0.670406 | 3_2:+74219384 | Msa0424040:CDS |
ATGGCAACTAGCATTGTCCA+CGG | 0.673612 | 3_2:-74216759 | None:intergenic |
TATTCAAAGAAGAGTAAGCG+AGG | 0.682011 | 3_2:+74219441 | Msa0424040:CDS |
GTTTCACCCATATTGATAGG+CGG | 0.683397 | 3_2:+74218673 | Msa0424040:CDS |
TGGAGTAACGACAACAGACA+GGG | 0.688299 | 3_2:+74218737 | Msa0424040:CDS |
AATCTGCATCTGAGACACAC+AGG | 0.689398 | 3_2:+74215114 | Msa0424040:five_prime_UTR |
ATATCTCAGACAAGAGACCA+GGG | 0.700312 | 3_2:-74218437 | None:intergenic |
GGATGCATCAGGGAACTCAG+TGG | 0.701774 | 3_2:+74219738 | Msa0424040:CDS |
GAGCCTAGAGTTGTGTGCAA+AGG | 0.708129 | 3_2:+74219600 | Msa0424040:CDS |
AGGGCAGGTATATCAACCAG+AGG | 0.716826 | 3_2:+74219685 | Msa0424040:CDS |
GACAAAGAACCAGAGACACG+AGG | 0.718132 | 3_2:+74219838 | Msa0424040:CDS |
GGCAGGTATATCAACCAGAG+GGG | 0.745288 | 3_2:+74219687 | Msa0424040:CDS |
TCTCAGACAAGAGACCAGGG+CGG | 0.828951 | 3_2:-74218434 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTAATTTTTTACTTAATAA+TGG | + | chr3_2:74214951-74214970 | Msa0424040:five_prime_UTR | 10.0% |
!!! | GTAATTTTTTACTTAATAAT+GGG | + | chr3_2:74214952-74214971 | Msa0424040:five_prime_UTR | 10.0% |
!!! | TATATTTTACTCTATAATAT+GGG | - | chr3_2:74215636-74215655 | None:intergenic | 10.0% |
!!! | TATATTTGAAATCTATAATA+CGG | - | chr3_2:74216162-74216181 | None:intergenic | 10.0% |
!!! | ATGTATAAATAAATTTTTCA+AGG | + | chr3_2:74218263-74218282 | Msa0424040:intron | 10.0% |
!!! | TGTATAAATAAATTTTTCAA+GGG | + | chr3_2:74218264-74218283 | Msa0424040:intron | 10.0% |
!!! | CAATTTCTTTTAAATAATCA+AGG | + | chr3_2:74215313-74215332 | Msa0424040:five_prime_UTR | 15.0% |
!!! | AAAGTAAAATGGTTTTAATT+GGG | - | chr3_2:74215445-74215464 | None:intergenic | 15.0% |
!!! | TAAAGTAAAATGGTTTTAAT+TGG | - | chr3_2:74215446-74215465 | None:intergenic | 15.0% |
!! | CTTGTAAAAATAAAGTAAAA+TGG | - | chr3_2:74215456-74215475 | None:intergenic | 15.0% |
!!! | GTATATTTTACTCTATAATA+TGG | - | chr3_2:74215637-74215656 | None:intergenic | 15.0% |
!! | AATTAAAATGTTATATCACT+TGG | + | chr3_2:74215886-74215905 | Msa0424040:intron | 15.0% |
!!! | CTTTAAAATTTAACCAAATA+TGG | + | chr3_2:74216070-74216089 | Msa0424040:intron | 15.0% |
!! | AAATAACAATTTCTCATAAA+TGG | - | chr3_2:74216260-74216279 | None:intergenic | 15.0% |
!! | TAAAAAATAGAAAAACTCTA+GGG | - | chr3_2:74216933-74216952 | None:intergenic | 15.0% |
!!! | TATTCAATTTTCAAACTTAT+AGG | + | chr3_2:74216960-74216979 | Msa0424040:intron | 15.0% |
!! | TTCATAAAGAATCATTTATT+TGG | + | chr3_2:74217061-74217080 | Msa0424040:intron | 15.0% |
!!! | CTTTTTTTTTTTTTTTGAAC+CGG | + | chr3_2:74217699-74217718 | Msa0424040:intron | 15.0% |
!!! | TTTTTTTTTTTTTTTGAACC+GGG | + | chr3_2:74217700-74217719 | Msa0424040:intron | 15.0% |
!! | TATATTCATTTATCAAGATA+TGG | + | chr3_2:74218167-74218186 | Msa0424040:intron | 15.0% |
!! | TAAAAAAAGAATATCTCTTA+TGG | + | chr3_2:74218575-74218594 | Msa0424040:CDS | 15.0% |
!! | TCATTTATTAAAGAAAGACA+TGG | - | chr3_2:74215735-74215754 | None:intergenic | 20.0% |
!!! | TATATACTTACCTTTTTTTG+AGG | + | chr3_2:74215760-74215779 | Msa0424040:intron | 20.0% |
!! | AAAAGGAATATTACCATATT+TGG | - | chr3_2:74216086-74216105 | None:intergenic | 20.0% |
!! | AAAAAATAGAAAAACTCTAG+GGG | - | chr3_2:74216932-74216951 | None:intergenic | 20.0% |
!! | GTAAAAAATAGAAAAACTCT+AGG | - | chr3_2:74216934-74216953 | None:intergenic | 20.0% |
!! | GATTCTTTATGAAACAATAA+AGG | - | chr3_2:74217054-74217073 | None:intergenic | 20.0% |
!! | CTCTTGACTATTATTAATAA+CGG | - | chr3_2:74217368-74217387 | None:intergenic | 20.0% |
!!! | TTTCTATTTTTTCAAGCTTA+GGG | - | chr3_2:74217585-74217604 | None:intergenic | 20.0% |
!! | AAAAAATAGAAAGAAAGTTG+TGG | + | chr3_2:74217593-74217612 | Msa0424040:intron | 20.0% |
!! | CTTTAACACTCTTTATTATT+GGG | + | chr3_2:74217836-74217855 | Msa0424040:intron | 20.0% |
!! | AATTATGCAATGTAAAAGTA+TGG | + | chr3_2:74217897-74217916 | Msa0424040:intron | 20.0% |
!! | TTAAATACTTGTATCAAGTA+GGG | - | chr3_2:74218010-74218029 | None:intergenic | 20.0% |
!! | GAAATACTGTATATATCAAT+CGG | - | chr3_2:74218049-74218068 | None:intergenic | 20.0% |
!!! | TTAACAGTTTTTCATACAAT+AGG | + | chr3_2:74218302-74218321 | Msa0424040:intron | 20.0% |
!!! | TATTCTTTTTTTATCATCCA+CGG | - | chr3_2:74218568-74218587 | None:intergenic | 20.0% |
!!! | TTCCTACTAATTTTGTTTAT+TGG | + | chr3_2:74219195-74219214 | Msa0424040:intron | 20.0% |
!!! | AATAATTTTCAGACAAACAA+GGG | - | chr3_2:74219222-74219241 | None:intergenic | 20.0% |
!!! | AAATAATTTTCAGACAAACA+AGG | - | chr3_2:74219223-74219242 | None:intergenic | 20.0% |
!!! | AACTTATTCTTGTAACATTT+TGG | - | chr3_2:74219258-74219277 | None:intergenic | 20.0% |
!! | AGTCTTAGTATTAAATTCTA+CGG | + | chr3_2:74219559-74219578 | Msa0424040:intron | 20.0% |
!!! | ATTTTTTTCTCAAAAGAGAG+AGG | + | chr3_2:74215024-74215043 | Msa0424040:five_prime_UTR | 25.0% |
!!! | TTTTTTTCTCAAAAGAGAGA+GGG | + | chr3_2:74215025-74215044 | Msa0424040:five_prime_UTR | 25.0% |
! | TAGAGTAAAATATACCAAAG+TGG | + | chr3_2:74215642-74215661 | Msa0424040:intron | 25.0% |
! | ATTAAAGAAAGACATGGTAT+TGG | - | chr3_2:74215729-74215748 | None:intergenic | 25.0% |
! | AATATACTTGCCTCAAAAAA+AGG | - | chr3_2:74215773-74215792 | None:intergenic | 25.0% |
! | GTACAGAAAAAAATAGAGTT+TGG | - | chr3_2:74215800-74215819 | None:intergenic | 25.0% |
! | GAGAAATCAAGATAAGATTA+AGG | - | chr3_2:74216046-74216065 | None:intergenic | 25.0% |
!! | CAAACTCATCTTAATTCTTT+TGG | + | chr3_2:74216370-74216389 | Msa0424040:intron | 25.0% |
!! | CACTTTGTGTAGTAATATTT+TGG | - | chr3_2:74216582-74216601 | None:intergenic | 25.0% |
! | CAAAATATTACTACACAAAG+TGG | + | chr3_2:74216580-74216599 | Msa0424040:intron | 25.0% |
! | ATAGAAAAAAGTCATCAAAG+AGG | - | chr3_2:74216834-74216853 | None:intergenic | 25.0% |
!!! | TCTTTGATGACTTTTTTCTA+TGG | + | chr3_2:74216833-74216852 | Msa0424040:intron | 25.0% |
!! | TCTTTGTAGCTAATGAATTT+TGG | - | chr3_2:74217278-74217297 | None:intergenic | 25.0% |
! | CGTTATTAATAATAGTCAAG+AGG | + | chr3_2:74217366-74217385 | Msa0424040:intron | 25.0% |
! | TATTAATAATAGTCAAGAGG+TGG | + | chr3_2:74217369-74217388 | Msa0424040:intron | 25.0% |
! | TTAGGAGTAATGTTGTAATA+TGG | + | chr3_2:74217525-74217544 | Msa0424040:intron | 25.0% |
!!! | CAACTTGTATTTTAACACTA+AGG | - | chr3_2:74217551-74217570 | None:intergenic | 25.0% |
!!! | CTTTCTATTTTTTCAAGCTT+AGG | - | chr3_2:74217586-74217605 | None:intergenic | 25.0% |
! | CGATGAGTAATTGAAAAAAA+CGG | + | chr3_2:74217743-74217762 | Msa0424040:intron | 25.0% |
! | TGCCTATCATAAAAATGAAA+TGG | + | chr3_2:74217774-74217793 | Msa0424040:intron | 25.0% |
!!! | TGCCATTTCATTTTTATGAT+AGG | - | chr3_2:74217779-74217798 | None:intergenic | 25.0% |
! | GCTTTAACACTCTTTATTAT+TGG | + | chr3_2:74217835-74217854 | Msa0424040:intron | 25.0% |
! | CTTAAATACTTGTATCAAGT+AGG | - | chr3_2:74218011-74218030 | None:intergenic | 25.0% |
! | ATATACAGTATTTCATGTCA+CGG | + | chr3_2:74218055-74218074 | Msa0424040:intron | 25.0% |
! | TTGTATGAAAAACTGTTAAC+AGG | - | chr3_2:74218301-74218320 | None:intergenic | 25.0% |
! | AAAAAGAATATCTCTTATGG+AGG | + | chr3_2:74218578-74218597 | Msa0424040:CDS | 25.0% |
!! | CAACATTCTATGGTAATTTT+CGG | - | chr3_2:74218783-74218802 | None:intergenic | 25.0% |
!! | GAATGTTTTCTATAAGATAG+AGG | + | chr3_2:74219053-74219072 | Msa0424040:intron | 25.0% |
!!! | CATTATTCTGTTTCTATGTA+AGG | - | chr3_2:74219117-74219136 | None:intergenic | 25.0% |
! | GTCCAATAAACAAAATTAGT+AGG | - | chr3_2:74219200-74219219 | None:intergenic | 25.0% |
! | ATTAGAAATATGAAGACTTG+AGG | + | chr3_2:74219300-74219319 | Msa0424040:intron | 25.0% |
!! | ACCTTTAGGAATACTTTATT+CGG | + | chr3_2:74219350-74219369 | Msa0424040:intron | 25.0% |
! | TATAGAAGAATAAATCTGCT+TGG | + | chr3_2:74219971-74219990 | Msa0424040:three_prime_UTR | 25.0% |
! | ATAGAAGAATAAATCTGCTT+GGG | + | chr3_2:74219972-74219991 | Msa0424040:three_prime_UTR | 25.0% |
!! | ATAAAAACTACGCATGTTTT+CGG | + | chr3_2:74220022-74220041 | Msa0424040:three_prime_UTR | 25.0% |
AGAGAGATTGTTAAACTAAG+TGG | + | chr3_2:74215069-74215088 | Msa0424040:five_prime_UTR | 30.0% | |
!!! | AATTTTGTCAATGATGGACA+TGG | - | chr3_2:74215251-74215270 | None:intergenic | 30.0% |
! | GCTGTAAATTTTGTCAATGA+TGG | - | chr3_2:74215257-74215276 | None:intergenic | 30.0% |
AAGATATTTCTTTCACTGGT+AGG | - | chr3_2:74215514-74215533 | None:intergenic | 30.0% | |
AGTGAAGATATTTCTTTCAC+TGG | - | chr3_2:74215518-74215537 | None:intergenic | 30.0% | |
AAATATACCAAAGTGGATAC+AGG | + | chr3_2:74215649-74215668 | Msa0424040:intron | 30.0% | |
GTAAGTTGCAGAAATAAACA+AGG | + | chr3_2:74215908-74215927 | Msa0424040:intron | 30.0% | |
TCATACTCAGGATCAAAATA+TGG | - | chr3_2:74215988-74216007 | None:intergenic | 30.0% | |
GATAAGATTAAGGTAAACCT+TGG | - | chr3_2:74216036-74216055 | None:intergenic | 30.0% | |
!!! | ATTTGATGGTTTTAGGCAAA+AGG | - | chr3_2:74216103-74216122 | None:intergenic | 30.0% |
CATAAAACGTGTGAATTTGA+TGG | - | chr3_2:74216117-74216136 | None:intergenic | 30.0% | |
AGCTCTGTTAAAAAAAGAGA+AGG | - | chr3_2:74216313-74216332 | None:intergenic | 30.0% | |
! | ATTGGTTTCAGCTAAGATTA+AGG | - | chr3_2:74216476-74216495 | None:intergenic | 30.0% |
AGATTGTGTTAAAAGGAGAT+CGG | - | chr3_2:74216513-74216532 | None:intergenic | 30.0% | |
CATGATCAGATTGTGTTAAA+AGG | - | chr3_2:74216520-74216539 | None:intergenic | 30.0% | |
TTTAACACAATCTGATCATG+AGG | + | chr3_2:74216520-74216539 | Msa0424040:intron | 30.0% | |
GCTTCAGTTTCTACTTTAAT+TGG | + | chr3_2:74216666-74216685 | Msa0424040:intron | 30.0% | |
AATGAAGTTTACCATCAAAG+AGG | - | chr3_2:74216722-74216741 | None:intergenic | 30.0% | |
AAACTTCATTTGTACTTTGC+AGG | + | chr3_2:74216732-74216751 | Msa0424040:intron | 30.0% | |
AACTTCATTTGTACTTTGCA+GGG | + | chr3_2:74216733-74216752 | Msa0424040:intron | 30.0% | |
!! | TTTGATAGTGTTAACAAACC+TGG | + | chr3_2:74217131-74217150 | Msa0424040:CDS | 30.0% |
ATCAGAAGATATGTAAGCTT+TGG | - | chr3_2:74217207-74217226 | None:intergenic | 30.0% | |
AAAGCTTACATATCTTCTGA+TGG | + | chr3_2:74217206-74217225 | Msa0424040:CDS | 30.0% | |
TCCCATATGAAATTTGAACA+GGG | - | chr3_2:74217307-74217326 | None:intergenic | 30.0% | |
TGTTCAAATTTCATATGGGA+CGG | + | chr3_2:74217307-74217326 | Msa0424040:intron | 30.0% | |
ATGGTAACCATTGAAAACTT+TGG | + | chr3_2:74217394-74217413 | Msa0424040:intron | 30.0% | |
! | ATAACTGCCAAAGTTTTCAA+TGG | - | chr3_2:74217404-74217423 | None:intergenic | 30.0% |
CTTACATGACACATTCATAT+TGG | - | chr3_2:74217458-74217477 | None:intergenic | 30.0% | |
! | CAATGTTTGGTAACAAAGTT+CGG | - | chr3_2:74217652-74217671 | None:intergenic | 30.0% |
ACACAGATATACACAATGTT+TGG | - | chr3_2:74217665-74217684 | None:intergenic | 30.0% | |
!! | TTTTTCAATTACTCATCGCA+AGG | - | chr3_2:74217741-74217760 | None:intergenic | 30.0% |
!! | TAATAAAGAGTGTTAAAGCG+TGG | - | chr3_2:74217834-74217853 | None:intergenic | 30.0% |
! | TATGCAATGTAAAAGTATGG+TGG | + | chr3_2:74217900-74217919 | Msa0424040:intron | 30.0% |
AACCATAGATCTCATTGAAA+AGG | + | chr3_2:74218109-74218128 | Msa0424040:CDS | 30.0% | |
! | TTTTTCATACAATAGGCTCT+AGG | + | chr3_2:74218309-74218328 | Msa0424040:intron | 30.0% |
ACAAAGAAGAAGTGAAGAAT+TGG | + | chr3_2:74218346-74218365 | Msa0424040:CDS | 30.0% | |
AATTACCATAGAATGTTGTG+AGG | + | chr3_2:74218785-74218804 | Msa0424040:CDS | 30.0% | |
! | TTTTTCCTCACAACATTCTA+TGG | - | chr3_2:74218793-74218812 | None:intergenic | 30.0% |
ATAGAATGTTGTGAGGAAAA+AGG | + | chr3_2:74218792-74218811 | Msa0424040:CDS | 30.0% | |
AGTCACACATAGTACTTAAA+TGG | + | chr3_2:74218985-74219004 | Msa0424040:intron | 30.0% | |
TTAAATGGTTCAAATGTCGA+GGG | + | chr3_2:74219000-74219019 | Msa0424040:intron | 30.0% | |
TATAAGATAGAGGTCATGAA+AGG | + | chr3_2:74219063-74219082 | Msa0424040:intron | 30.0% | |
! | AGATACAGCTTTTCTCAATT+TGG | + | chr3_2:74219170-74219189 | Msa0424040:intron | 30.0% |
TACAAGAATAAGTTCTCACT+TGG | + | chr3_2:74219264-74219283 | Msa0424040:intron | 30.0% | |
GTTCTCACTTGGATTAATTT+AGG | + | chr3_2:74219275-74219294 | Msa0424040:intron | 30.0% | |
AAAAGTTCTTTCACAAATCG+TGG | - | chr3_2:74219506-74219525 | None:intergenic | 30.0% | |
! | GTATTAAATTCTACGGATTG+TGG | + | chr3_2:74219566-74219585 | Msa0424040:intron | 30.0% |
TCTTAATGTCTTCTATGTGA+GGG | + | chr3_2:74219717-74219736 | Msa0424040:CDS | 30.0% | |
AACAATCATGCATCTTAGTT+TGG | + | chr3_2:74219914-74219933 | Msa0424040:exon | 30.0% | |
! | GTAGTTTTTATAGCATTGTG+TGG | - | chr3_2:74220013-74220032 | None:intergenic | 30.0% |
! | ATCTTGTTTCTCTTGCAAAG+TGG | - | chr3_2:74215004-74215023 | None:intergenic | 35.0% |
TTGGAGAATGATACTGATAG+AGG | - | chr3_2:74215224-74215243 | None:intergenic | 35.0% | |
! | TTTTGTTCCTGTATCCACTT+TGG | - | chr3_2:74215659-74215678 | None:intergenic | 35.0% |
TTGCTGAAATTCTCATACTC+AGG | - | chr3_2:74216000-74216019 | None:intergenic | 35.0% | |
AGATTAAGGTAAACCTTGGA+GGG | - | chr3_2:74216032-74216051 | None:intergenic | 35.0% | |
AAGATTAAGGTAAACCTTGG+AGG | - | chr3_2:74216033-74216052 | None:intergenic | 35.0% | |
!! | CGTGTGAATTTGATGGTTTT+AGG | - | chr3_2:74216110-74216129 | None:intergenic | 35.0% |
!!! | ATACTTTTTTAAGGAGACCG+TGG | + | chr3_2:74216184-74216203 | Msa0424040:intron | 35.0% |
GTAGAAACTGAAGCTGAATA+AGG | - | chr3_2:74216660-74216679 | None:intergenic | 35.0% | |
!! | AAAAGAAGTGTCCTCTTTGA+TGG | + | chr3_2:74216708-74216727 | Msa0424040:intron | 35.0% |
CCTTGATTAGTGTACAGTTA+TGG | - | chr3_2:74216781-74216800 | None:intergenic | 35.0% | |
CCATAACTGTACACTAATCA+AGG | + | chr3_2:74216778-74216797 | Msa0424040:CDS | 35.0% | |
!! | TAGACTTCTAAAGTAGCTGA+TGG | - | chr3_2:74216882-74216901 | None:intergenic | 35.0% |
! | ATCAGCTACTTTAGAAGTCT+AGG | + | chr3_2:74216881-74216900 | Msa0424040:intron | 35.0% |
TAAAAAGTGGTACTCACAGA+GGG | - | chr3_2:74217005-74217024 | None:intergenic | 35.0% | |
TTAAAAAGTGGTACTCACAG+AGG | - | chr3_2:74217006-74217025 | None:intergenic | 35.0% | |
ACAAGTGGCTACTTAAAAAG+TGG | - | chr3_2:74217018-74217037 | None:intergenic | 35.0% | |
TAACAAACCTGGAATTCTAC+TGG | + | chr3_2:74217142-74217161 | Msa0424040:CDS | 35.0% | |
! | CTTTGGTGATTATGAAGTCA+AGG | - | chr3_2:74217190-74217209 | None:intergenic | 35.0% |
TGCCCTGTTCAAATTTCATA+TGG | + | chr3_2:74217302-74217321 | Msa0424040:intron | 35.0% | |
GCCCTGTTCAAATTTCATAT+GGG | + | chr3_2:74217303-74217322 | Msa0424040:intron | 35.0% | |
GTCCCATATGAAATTTGAAC+AGG | - | chr3_2:74217308-74217327 | None:intergenic | 35.0% | |
GTTCAAATTTCATATGGGAC+GGG | + | chr3_2:74217308-74217327 | Msa0424040:intron | 35.0% | |
TAATAGTCAAGAGGTGGTAA+TGG | + | chr3_2:74217375-74217394 | Msa0424040:intron | 35.0% | |
TATGAGTCATACTCACTGAT+AGG | - | chr3_2:74217493-74217512 | None:intergenic | 35.0% | |
!!! | GCATGAGTTTTAGACGAAAA+AGG | + | chr3_2:74217796-74217815 | Msa0424040:intron | 35.0% |
!! | GTTTTAGACGAAAAAGGAAG+AGG | + | chr3_2:74217802-74217821 | Msa0424040:intron | 35.0% |
CACACAATCACACACATTTA+TGG | + | chr3_2:74217965-74217984 | Msa0424040:intron | 35.0% | |
! | CACCTTTTCAATGAGATCTA+TGG | - | chr3_2:74218114-74218133 | None:intergenic | 35.0% |
!!! | TCTTCTTTGTTCTGGCTTTT+CGG | - | chr3_2:74218336-74218355 | None:intergenic | 35.0% |
TCTTCACTTCTTCTTTGTTC+TGG | - | chr3_2:74218344-74218363 | None:intergenic | 35.0% | |
CATATAGCGATTGAGCTAAT+CGG | + | chr3_2:74218405-74218424 | Msa0424040:CDS | 35.0% | |
ATATAGCGATTGAGCTAATC+GGG | + | chr3_2:74218406-74218425 | Msa0424040:CDS | 35.0% | |
TGTGTCCTTTATGTCAATGA+TGG | + | chr3_2:74218531-74218550 | Msa0424040:CDS | 35.0% | |
TCGTACCATCATTGACATAA+AGG | - | chr3_2:74218539-74218558 | None:intergenic | 35.0% | |
! | CAGCTCAATAACATTTTACG+TGG | + | chr3_2:74218603-74218622 | Msa0424040:CDS | 35.0% |
! | TAACATTTTACGTGGATGTG+AGG | + | chr3_2:74218611-74218630 | Msa0424040:CDS | 35.0% |
ATCAATATGGGTGAAACTCA+TGG | - | chr3_2:74218670-74218689 | None:intergenic | 35.0% | |
TGAGTTTCACCCATATTGAT+AGG | + | chr3_2:74218670-74218689 | Msa0424040:CDS | 35.0% | |
! | ACCAAATGTTGTTTGCTGAT+CGG | + | chr3_2:74218700-74218719 | Msa0424040:CDS | 35.0% |
GATCGGGATTATGAAAGTTA+TGG | + | chr3_2:74218717-74218736 | Msa0424040:CDS | 35.0% | |
! | ATTCTATGGTAATTTTCGGC+CGG | - | chr3_2:74218779-74218798 | None:intergenic | 35.0% |
TTGTGAGGAAAAAGGATACT+CGG | + | chr3_2:74218800-74218819 | Msa0424040:CDS | 35.0% | |
CTTAAATGGTTCAAATGTCG+AGG | + | chr3_2:74218999-74219018 | Msa0424040:intron | 35.0% | |
GGAGGATTTGTGTATTCAAA+TGG | + | chr3_2:74219091-74219110 | Msa0424040:intron | 35.0% | |
ATATGAAGACTTGAGGAATG+TGG | + | chr3_2:74219307-74219326 | Msa0424040:intron | 35.0% | |
TATGAAGACTTGAGGAATGT+GGG | + | chr3_2:74219308-74219327 | Msa0424040:intron | 35.0% | |
AATGTTGATCGTGTACCTTT+AGG | + | chr3_2:74219336-74219355 | Msa0424040:intron | 35.0% | |
! | GCCGAATAAAGTATTCCTAA+AGG | - | chr3_2:74219354-74219373 | None:intergenic | 35.0% |
TATTCAAAGAAGAGTAAGCG+AGG | + | chr3_2:74219441-74219460 | Msa0424040:CDS | 35.0% | |
! | ACAAGAATTCTGAGAGAGAA+TGG | + | chr3_2:74219649-74219668 | Msa0424040:CDS | 35.0% |
CTCTTAATGTCTTCTATGTG+AGG | + | chr3_2:74219716-74219735 | Msa0424040:CDS | 35.0% | |
! | GAAGCACTTCGTAAAGAAAT+CGG | + | chr3_2:74219775-74219794 | Msa0424040:CDS | 35.0% |
AGAAATCGGTAAGACAATGA+TGG | + | chr3_2:74219789-74219808 | Msa0424040:CDS | 35.0% | |
AATGATGGTAGATGTGAAGA+AGG | + | chr3_2:74219804-74219823 | Msa0424040:CDS | 35.0% | |
!! | TCTGGTTCTTTGTCATATGT+TGG | - | chr3_2:74219832-74219851 | None:intergenic | 35.0% |
! | GCTAAAACTAGCTTCTTCTT+TGG | + | chr3_2:74219865-74219884 | Msa0424040:CDS | 35.0% |
! | CTTCTTCTTTGGTAACTTGT+TGG | + | chr3_2:74219876-74219895 | Msa0424040:CDS | 35.0% |
!! | TCTTTGGTAACTTGTTGGAA+AGG | + | chr3_2:74219881-74219900 | Msa0424040:CDS | 35.0% |
!! | TAACTTGTTGGAAAGGTTCT+TGG | + | chr3_2:74219888-74219907 | Msa0424040:CDS | 35.0% |
TTTCTCTTGCAAAGTGGTGT+GGG | - | chr3_2:74214998-74215017 | None:intergenic | 40.0% | |
AGATTCTCTACTTTCGACGT+TGG | - | chr3_2:74215099-74215118 | None:intergenic | 40.0% | |
ACCAGAGAAGCTGTTTAGAA+TGG | + | chr3_2:74215948-74215967 | Msa0424040:exon | 40.0% | |
TTAGAATGGCTGCAGTTTGT+TGG | + | chr3_2:74215962-74215981 | Msa0424040:exon | 40.0% | |
GAGTGAGACACTACATATGT+TGG | - | chr3_2:74216210-74216229 | None:intergenic | 40.0% | |
GTTAAAAGGAGATCGGAGTT+GGG | - | chr3_2:74216506-74216525 | None:intergenic | 40.0% | |
TGTTAAAAGGAGATCGGAGT+TGG | - | chr3_2:74216507-74216526 | None:intergenic | 40.0% | |
TATGGCCTCTATATGAGTTG+TGG | + | chr3_2:74216851-74216870 | Msa0424040:intron | 40.0% | |
CCAAACCACAACTCATATAG+AGG | - | chr3_2:74216859-74216878 | None:intergenic | 40.0% | |
CCTCTATATGAGTTGTGGTT+TGG | + | chr3_2:74216856-74216875 | Msa0424040:intron | 40.0% | |
GCTTACATATCTTCTGATGG+AGG | + | chr3_2:74217209-74217228 | Msa0424040:CDS | 40.0% | |
ACATATCTTCTGATGGAGGA+TGG | + | chr3_2:74217213-74217232 | Msa0424040:CDS | 40.0% | |
CTCATAGTGCAGTACAGTTT+AGG | + | chr3_2:74217507-74217526 | Msa0424040:intron | 40.0% | |
AGGTATTAAAACAGCACTCC+CGG | - | chr3_2:74217721-74217740 | None:intergenic | 40.0% | |
! | AGAGTGTTAAAGCGTGGTAT+TGG | - | chr3_2:74217828-74217847 | None:intergenic | 40.0% |
TTGGGTGAATGAATCAGTCT+AGG | + | chr3_2:74217854-74217873 | Msa0424040:intron | 40.0% | |
TGTGTTTGAAAAGAGAGAGC+AGG | - | chr3_2:74217949-74217968 | None:intergenic | 40.0% | |
TTTCATGTCACGGATCAACA+AGG | + | chr3_2:74218065-74218084 | Msa0424040:CDS | 40.0% | |
GTTTCTATCTAACTACCACG+TGG | + | chr3_2:74218189-74218208 | Msa0424040:intron | 40.0% | |
GAAGAAGTGAAGAATTGGTC+AGG | + | chr3_2:74218351-74218370 | Msa0424040:CDS | 40.0% | |
TGAAGAATTGGTCAGGCAAA+TGG | + | chr3_2:74218358-74218377 | Msa0424040:CDS | 40.0% | |
GAAGAATTGGTCAGGCAAAT+GGG | + | chr3_2:74218359-74218378 | Msa0424040:CDS | 40.0% | |
ATATCTCAGACAAGAGACCA+GGG | - | chr3_2:74218440-74218459 | None:intergenic | 40.0% | |
CTACAACCACGTTAAAATGG+AGG | - | chr3_2:74218479-74218498 | None:intergenic | 40.0% | |
CAGCTACAACCACGTTAAAA+TGG | - | chr3_2:74218482-74218501 | None:intergenic | 40.0% | |
! | ATTTTACGTGGATGTGAGGA+TGG | + | chr3_2:74218615-74218634 | Msa0424040:CDS | 40.0% |
ATGGAGAGAAAGTTGCTAGT+AGG | + | chr3_2:74218634-74218653 | Msa0424040:CDS | 40.0% | |
GTTTCACCCATATTGATAGG+CGG | + | chr3_2:74218673-74218692 | Msa0424040:CDS | 40.0% | |
GATCAGCAAACAACATTTGG+TGG | - | chr3_2:74218701-74218720 | None:intergenic | 40.0% | |
! | CCAAATGTTGTTTGCTGATC+GGG | + | chr3_2:74218701-74218720 | Msa0424040:CDS | 40.0% |
GTGACTGATAAGTGAACATG+CGG | - | chr3_2:74218971-74218990 | None:intergenic | 40.0% | |
GGAATACTTTATTCGGCACA+TGG | + | chr3_2:74219357-74219376 | Msa0424040:intron | 40.0% | |
TACTTTATTCGGCACATGGA+CGG | + | chr3_2:74219361-74219380 | Msa0424040:CDS | 40.0% | |
GATGCACACTTGATACAGAA+GGG | + | chr3_2:74219383-74219402 | Msa0424040:CDS | 40.0% | |
ATGCACACTTGATACAGAAG+GGG | + | chr3_2:74219384-74219403 | Msa0424040:CDS | 40.0% | |
ATACAGAAGGGGAGAAAGAA+AGG | + | chr3_2:74219395-74219414 | Msa0424040:CDS | 40.0% | |
TACAGAAGGGGAGAAAGAAA+GGG | + | chr3_2:74219396-74219415 | Msa0424040:CDS | 40.0% | |
TATCCTTTGCACACAACTCT+AGG | - | chr3_2:74219606-74219625 | None:intergenic | 40.0% | |
TTGTGTGCAAAGGATAGAGT+GGG | + | chr3_2:74219610-74219629 | Msa0424040:CDS | 40.0% | |
AGAATGGCCTAACAGTTTGT+AGG | + | chr3_2:74219665-74219684 | Msa0424040:CDS | 40.0% | |
GAATGGCCTAACAGTTTGTA+GGG | + | chr3_2:74219666-74219685 | Msa0424040:CDS | 40.0% | |
GTTTCTCTTGCAAAGTGGTG+TGG | - | chr3_2:74214999-74215018 | None:intergenic | 45.0% | |
! | AATCTGCATCTGAGACACAC+AGG | + | chr3_2:74215114-74215133 | Msa0424040:five_prime_UTR | 45.0% |
!! | CAATGATGGACATGGAAGCT+TGG | - | chr3_2:74215243-74215262 | None:intergenic | 45.0% |
GCCATTCTAAACAGCTTCTC+TGG | - | chr3_2:74215952-74215971 | None:intergenic | 45.0% | |
GCAACAAAATCAACCCTCCA+AGG | + | chr3_2:74216016-74216035 | Msa0424040:CDS | 45.0% | |
GACACTACATATGTTGGCCA+CGG | - | chr3_2:74216204-74216223 | None:intergenic | 45.0% | |
TCGGAGTTGGGTAGGTAAAT+TGG | - | chr3_2:74216494-74216513 | None:intergenic | 45.0% | |
ATGGCAACTAGCATTGTCCA+CGG | - | chr3_2:74216762-74216781 | None:intergenic | 45.0% | |
GGAGCAATGTGACAAACAAG+TGG | - | chr3_2:74217033-74217052 | None:intergenic | 45.0% | |
ACCTGGAATTCTACTGGAAG+TGG | + | chr3_2:74217148-74217167 | Msa0424040:CDS | 45.0% | |
ACCACTTCCAGTAGAATTCC+AGG | - | chr3_2:74217152-74217171 | None:intergenic | 45.0% | |
TTCTGATGGAGGATGGTTCA+TGG | + | chr3_2:74217220-74217239 | Msa0424040:CDS | 45.0% | |
ATGAATTCGAGTCTTCCACG+TGG | - | chr3_2:74218207-74218226 | None:intergenic | 45.0% | |
AATTGGTCAGGCAAATGGGT+TGG | + | chr3_2:74218363-74218382 | Msa0424040:CDS | 45.0% | |
! | ATTGGTCAGGCAAATGGGTT+GGG | + | chr3_2:74218364-74218383 | Msa0424040:CDS | 45.0% |
GATATCTCAGACAAGAGACC+AGG | - | chr3_2:74218441-74218460 | None:intergenic | 45.0% | |
AACCACGTTAAAATGGAGGC+TGG | - | chr3_2:74218475-74218494 | None:intergenic | 45.0% | |
CTGAAGTGTGGACTCATAAC+AGG | + | chr3_2:74218499-74218518 | Msa0424040:CDS | 45.0% | |
GGTGAAACTCATGGACAAAC+TGG | - | chr3_2:74218661-74218680 | None:intergenic | 45.0% | |
CCCGATCAGCAAACAACATT+TGG | - | chr3_2:74218704-74218723 | None:intergenic | 45.0% | |
ATGGAGTAACGACAACAGAC+AGG | + | chr3_2:74218736-74218755 | Msa0424040:CDS | 45.0% | |
TGGAGTAACGACAACAGACA+GGG | + | chr3_2:74218737-74218756 | Msa0424040:CDS | 45.0% | |
! | GTAATTTTCGGCCGGAAAGA+GGG | - | chr3_2:74218771-74218790 | None:intergenic | 45.0% |
TGAGGAAAAAGGATACTCGG+TGG | + | chr3_2:74218803-74218822 | Msa0424040:CDS | 45.0% | |
TTCCCATGCCACAATCTCAT+CGG | + | chr3_2:74218902-74218921 | Msa0424040:CDS | 45.0% | |
ATCCGATGAGATTGTGGCAT+GGG | - | chr3_2:74218907-74218926 | None:intergenic | 45.0% | |
GATGTACCTGCGATGCATAA+GGG | - | chr3_2:74218932-74218951 | None:intergenic | 45.0% | |
TGATGTACCTGCGATGCATA+AGG | - | chr3_2:74218933-74218952 | None:intergenic | 45.0% | |
TAGAGGTCATGAAAGGCTTG+TGG | + | chr3_2:74219070-74219089 | Msa0424040:intron | 45.0% | |
GGATGCACACTTGATACAGA+AGG | + | chr3_2:74219382-74219401 | Msa0424040:CDS | 45.0% | |
! | ATTCTACGGATTGTGGACAC+AGG | + | chr3_2:74219573-74219592 | Msa0424040:intron | 45.0% |
! | TTCTACGGATTGTGGACACA+GGG | + | chr3_2:74219574-74219593 | Msa0424040:intron | 45.0% |
GTTGTGTGCAAAGGATAGAG+TGG | + | chr3_2:74219609-74219628 | Msa0424040:CDS | 45.0% | |
TACCTGCCCTACAAACTGTT+AGG | - | chr3_2:74219675-74219694 | None:intergenic | 45.0% | |
! | ATTAAGAGCTTGTTCCCCTC+TGG | - | chr3_2:74219704-74219723 | None:intergenic | 45.0% |
TTCTATGTGAGGGATGCATC+AGG | + | chr3_2:74219727-74219746 | Msa0424040:CDS | 45.0% | |
TCTATGTGAGGGATGCATCA+GGG | + | chr3_2:74219728-74219747 | Msa0424040:CDS | 45.0% | |
!!! | AAATATAAAATACTTTTTTA+AGG | + | chr3_2:74216175-74216194 | Msa0424040:intron | 5.0% |
!!! | TTTATTTTATTTTTGAAATA+CGG | + | chr3_2:74216339-74216358 | Msa0424040:intron | 5.0% |
!! | TTAAAATTAAAATGTTTAAT+TGG | + | chr3_2:74216624-74216643 | Msa0424040:intron | 5.0% |
AAAGGAGATCGGAGTTGGGT+AGG | - | chr3_2:74216502-74216521 | None:intergenic | 50.0% | |
GATGGAGGATGGTTCATGGA+TGG | + | chr3_2:74217224-74217243 | Msa0424040:CDS | 50.0% | |
GGGACGGGACTGTTGTAAAA+TGG | + | chr3_2:74217323-74217342 | Msa0424040:intron | 50.0% | |
TGACCACATCTCCGACTACA+GGG | - | chr3_2:74217622-74217641 | None:intergenic | 50.0% | |
!! | TTGGTCAGGCAAATGGGTTG+GGG | + | chr3_2:74218365-74218384 | Msa0424040:CDS | 50.0% |
CGTTAAAATGGAGGCTGGCA+AGG | - | chr3_2:74218470-74218489 | None:intergenic | 50.0% | |
!! | TGCCAGCCTCCATTTTAACG+TGG | + | chr3_2:74218470-74218489 | Msa0424040:CDS | 50.0% |
ACGTGGTTGTAGCTGAAGTG+TGG | + | chr3_2:74218487-74218506 | Msa0424040:CDS | 50.0% | |
GTGGAGCCGCCTATCAATAT+GGG | - | chr3_2:74218682-74218701 | None:intergenic | 50.0% | |
! | GGTAATTTTCGGCCGGAAAG+AGG | - | chr3_2:74218772-74218791 | None:intergenic | 50.0% |
GATCCGATGAGATTGTGGCA+TGG | - | chr3_2:74218908-74218927 | None:intergenic | 50.0% | |
AGGTCATGAAAGGCTTGTGG+AGG | + | chr3_2:74219073-74219092 | Msa0424040:intron | 50.0% | |
GAGCCTAGAGTTGTGTGCAA+AGG | + | chr3_2:74219600-74219619 | Msa0424040:CDS | 50.0% | |
AGGGCAGGTATATCAACCAG+AGG | + | chr3_2:74219685-74219704 | Msa0424040:CDS | 50.0% | |
GGGCAGGTATATCAACCAGA+GGG | + | chr3_2:74219686-74219705 | Msa0424040:CDS | 50.0% | |
GGCAGGTATATCAACCAGAG+GGG | + | chr3_2:74219687-74219706 | Msa0424040:CDS | 50.0% | |
GACAAAGAACCAGAGACACG+AGG | + | chr3_2:74219838-74219857 | Msa0424040:CDS | 50.0% | |
AAGAACCAGAGACACGAGGA+TGG | + | chr3_2:74219842-74219861 | Msa0424040:CDS | 50.0% | |
AGAACCAGAGACACGAGGAT+GGG | + | chr3_2:74219843-74219862 | Msa0424040:CDS | 50.0% | |
TTGCAAAGTGGTGTGGGCGT+GGG | - | chr3_2:74214992-74215011 | None:intergenic | 55.0% | |
TGTACTTTGCAGGGTCTCCG+TGG | + | chr3_2:74216742-74216761 | Msa0424040:intron | 55.0% | |
TGGTACTCACAGAGGGCTAG+TGG | - | chr3_2:74216998-74217017 | None:intergenic | 55.0% | |
GTGACCACATCTCCGACTAC+AGG | - | chr3_2:74217623-74217642 | None:intergenic | 55.0% | |
! | TGGGTTGGGGTGCATTCTGT+TGG | + | chr3_2:74218378-74218397 | Msa0424040:CDS | 55.0% |
TCTCAGACAAGAGACCAGGG+CGG | - | chr3_2:74218437-74218456 | None:intergenic | 55.0% | |
TGATGGTACGAGACAAGCCG+TGG | + | chr3_2:74218548-74218567 | Msa0424040:CDS | 55.0% | |
GGTGGAGCCGCCTATCAATA+TGG | - | chr3_2:74218683-74218702 | None:intergenic | 55.0% | |
GGGAATGTCCTCCCTCTTTC+CGG | + | chr3_2:74218757-74218776 | Msa0424040:CDS | 55.0% | |
! | ATTTTCGGCCGGAAAGAGGG+AGG | - | chr3_2:74218768-74218787 | None:intergenic | 55.0% |
AGGGCGATCCGATGAGATTG+TGG | - | chr3_2:74218913-74218932 | None:intergenic | 55.0% | |
GGCCTAACAGTTTGTAGGGC+AGG | + | chr3_2:74219670-74219689 | Msa0424040:CDS | 55.0% | |
GGATGCATCAGGGAACTCAG+TGG | + | chr3_2:74219738-74219757 | Msa0424040:CDS | 55.0% | |
TTAGCCCATCCTCGTGTCTC+TGG | - | chr3_2:74219850-74219869 | None:intergenic | 55.0% | |
TGTGGGCGTGGGGTTAATGG+TGG | - | chr3_2:74214981-74215000 | None:intergenic | 60.0% | |
TGGTGTGGGCGTGGGGTTAA+TGG | - | chr3_2:74214984-74215003 | None:intergenic | 60.0% | |
TGCAAAGTGGTGTGGGCGTG+GGG | - | chr3_2:74214991-74215010 | None:intergenic | 60.0% | |
CTTGCAAAGTGGTGTGGGCG+TGG | - | chr3_2:74214993-74215012 | None:intergenic | 60.0% | |
AGTTGTGGCCGCCCTGTAGT+CGG | + | chr3_2:74217608-74217627 | Msa0424040:intron | 60.0% | |
CCACATCTCCGACTACAGGG+CGG | - | chr3_2:74217619-74217638 | None:intergenic | 60.0% | |
GGATCGCCCTTATGCATCGC+AGG | + | chr3_2:74218923-74218942 | Msa0424040:CDS | 60.0% | |
CCGCCCTGTAGTCGGAGATG+TGG | + | chr3_2:74217616-74217635 | Msa0424040:intron | 65.0% | |
CTAATCGGGAGAGACCGCCC+TGG | + | chr3_2:74218420-74218439 | Msa0424040:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 74214922 | 74220051 | 74214922 | ID=Msa0424040;Name=Msa0424040 |
chr3_2 | mRNA | 74214922 | 74220051 | 74214922 | ID=Msa0424040-mRNA-1;Parent=Msa0424040;Name=Msa0424040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=366|1|1|1|0.75|0.66|9|136|448 |
chr3_2 | exon | 74214922 | 74215135 | 74214922 | ID=Msa0424040-mRNA-1:exon:18674;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74215231 | 74215334 | 74215231 | ID=Msa0424040-mRNA-1:exon:18675;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74215919 | 74216037 | 74215919 | ID=Msa0424040-mRNA-1:exon:18676;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74216754 | 74216799 | 74216754 | ID=Msa0424040-mRNA-1:exon:18677;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74217131 | 74217245 | 74217131 | ID=Msa0424040-mRNA-1:exon:18678;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74218063 | 74218130 | 74218063 | ID=Msa0424040-mRNA-1:exon:18679;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74218324 | 74218944 | 74218324 | ID=Msa0424040-mRNA-1:exon:18680;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74219358 | 74219462 | 74219358 | ID=Msa0424040-mRNA-1:exon:18681;Parent=Msa0424040-mRNA-1 |
chr3_2 | exon | 74219595 | 74220051 | 74219595 | ID=Msa0424040-mRNA-1:exon:18682;Parent=Msa0424040-mRNA-1 |
chr3_2 | five_prime_UTR | 74214922 | 74215135 | 74214922 | ID=Msa0424040-mRNA-1:five_prime_utr;Parent=Msa0424040-mRNA-1 |
chr3_2 | five_prime_UTR | 74215231 | 74215334 | 74215231 | ID=Msa0424040-mRNA-1:five_prime_utr;Parent=Msa0424040-mRNA-1 |
chr3_2 | five_prime_UTR | 74215919 | 74215966 | 74215919 | ID=Msa0424040-mRNA-1:five_prime_utr;Parent=Msa0424040-mRNA-1 |
chr3_2 | CDS | 74215967 | 74216037 | 74215967 | ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1 |
chr3_2 | CDS | 74216754 | 74216799 | 74216754 | ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1 |
chr3_2 | CDS | 74217131 | 74217245 | 74217131 | ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1 |
chr3_2 | CDS | 74218063 | 74218130 | 74218063 | ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1 |
chr3_2 | CDS | 74218324 | 74218944 | 74218324 | ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1 |
chr3_2 | CDS | 74219358 | 74219462 | 74219358 | ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1 |
chr3_2 | CDS | 74219595 | 74219915 | 74219595 | ID=Msa0424040-mRNA-1:cds;Parent=Msa0424040-mRNA-1 |
chr3_2 | three_prime_UTR | 74219916 | 74220051 | 74219916 | ID=Msa0424040-mRNA-1:three_prime_utr;Parent=Msa0424040-mRNA-1 |
Gene Sequence |
Protein sequence |