Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632870 | XP_039689235.1 | 98.305 | 177 | 3 | 0 | 25 | 201 | 47 | 223 | 2.06e-123 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632870 | sp|P54168|YPGQ_BACSU | 40.854 | 164 | 74 | 5 | 33 | 193 | 50 | 193 | 3.13e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632870 | G7JDD3 | 98.305 | 177 | 3 | 0 | 25 | 201 | 110 | 286 | 2.73e-123 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0632870 | 0.829884 | 4.010264e-55 | -8.615850e-47 |
| Msa0012040 | Msa0632870 | 0.808664 | 2.771274e-50 | -8.615850e-47 |
| Msa0013050 | Msa0632870 | -0.859554 | 3.817237e-63 | -8.615850e-47 |
| Msa0023000 | Msa0632870 | 0.806402 | 8.369363e-50 | -8.615850e-47 |
| Msa0025730 | Msa0632870 | 0.800210 | 1.603809e-48 | -8.615850e-47 |
| Msa0028660 | Msa0632870 | 0.800102 | 1.687037e-48 | -8.615850e-47 |
| Msa0030380 | Msa0632870 | 0.807827 | 4.178683e-50 | -8.615850e-47 |
| Msa0032580 | Msa0632870 | 0.824443 | 8.048309e-54 | -8.615850e-47 |
| Msa0032610 | Msa0632870 | 0.821681 | 3.547866e-53 | -8.615850e-47 |
| Msa0036160 | Msa0632870 | 0.849077 | 4.076501e-60 | -8.615850e-47 |
| Msa0039330 | Msa0632870 | 0.800835 | 1.196201e-48 | -8.615850e-47 |
| Msa0052640 | Msa0632870 | 0.800554 | 1.364666e-48 | -8.615850e-47 |
| Msa0052770 | Msa0632870 | 0.822106 | 2.829183e-53 | -8.615850e-47 |
| Msa0054750 | Msa0632870 | 0.800285 | 1.548608e-48 | -8.615850e-47 |
| Msa0054780 | Msa0632870 | 0.808960 | 2.395608e-50 | -8.615850e-47 |
| Msa0058300 | Msa0632870 | 0.805918 | 1.058575e-49 | -8.615850e-47 |
| Msa0061080 | Msa0632870 | 0.805474 | 1.311688e-49 | -8.615850e-47 |
| Msa0081930 | Msa0632870 | 0.801596 | 8.358057e-49 | -8.615850e-47 |
| Msa0091570 | Msa0632870 | 0.819378 | 1.198762e-52 | -8.615850e-47 |
| Msa0097780 | Msa0632870 | 0.801093 | 1.059468e-48 | -8.615850e-47 |
| Msa0105620 | Msa0632870 | 0.801821 | 7.512412e-49 | -8.615850e-47 |
| Msa0115270 | Msa0632870 | 0.825632 | 4.216984e-54 | -8.615850e-47 |
| Msa0115390 | Msa0632870 | 0.811206 | 7.862462e-51 | -8.615850e-47 |
| Msa0119850 | Msa0632870 | 0.870209 | 1.734455e-66 | -8.615850e-47 |
| Msa0605170 | Msa0632870 | 0.801427 | 9.050188e-49 | -8.615850e-47 |
| Msa0607340 | Msa0632870 | -0.825445 | 4.668893e-54 | -8.615850e-47 |
| Msa0610430 | Msa0632870 | 0.822166 | 2.739829e-53 | -8.615850e-47 |
| Msa0616240 | Msa0632870 | 0.805893 | 1.071581e-49 | -8.615850e-47 |
| Msa0618010 | Msa0632870 | 0.804689 | 1.914384e-49 | -8.615850e-47 |
| Msa0621490 | Msa0632870 | 0.827892 | 1.217393e-54 | -8.615850e-47 |
| Msa0623790 | Msa0632870 | 0.804386 | 2.215030e-49 | -8.615850e-47 |
| Msa0632870 | Msa0643560 | 0.820201 | 7.772781e-53 | -8.615850e-47 |
| Msa0632870 | Msa0647450 | -0.813289 | 2.760069e-51 | -8.615850e-47 |
| Msa0632870 | Msa0660490 | 0.801574 | 8.442799e-49 | -8.615850e-47 |
| Msa0632870 | Msa0661190 | -0.837956 | 3.827638e-57 | -8.615850e-47 |
| Msa0632870 | Msa0663920 | 0.800476 | 1.416052e-48 | -8.615850e-47 |
| Msa0632870 | Msa0671740 | 0.902258 | 1.164536e-78 | -8.615850e-47 |
| Msa0632870 | Msa0688960 | 0.812957 | 3.264569e-51 | -8.615850e-47 |
| Msa0632870 | Msa0692830 | 0.829154 | 6.033051e-55 | -8.615850e-47 |
| Msa0632870 | Msa0692950 | 0.823552 | 1.302476e-53 | -8.615850e-47 |
| Msa0632870 | Msa0699570 | 0.805910 | 1.062650e-49 | -8.615850e-47 |
| Msa0632870 | Msa0701920 | 0.803328 | 3.673416e-49 | -8.615850e-47 |
| Msa0632870 | Msa0705420 | 0.822983 | 1.769070e-53 | -8.615850e-47 |
| Msa0632870 | Msa0716840 | 0.817581 | 3.061591e-52 | -8.615850e-47 |
| Msa0632870 | Msa0736320 | 0.802238 | 6.168144e-49 | -8.615850e-47 |
| Msa0632870 | Msa0743720 | 0.812494 | 4.122603e-51 | -8.615850e-47 |
| Msa0632870 | Msa0761800 | 0.818333 | 2.070592e-52 | -8.615850e-47 |
| Msa0632870 | Msa0771720 | 0.800806 | 1.212443e-48 | -8.615850e-47 |
| Msa0632870 | Msa0772480 | 0.803567 | 3.277322e-49 | -8.615850e-47 |
| Msa0632870 | Msa0784860 | 0.868630 | 5.661574e-66 | -8.615850e-47 |
| Msa0632870 | Msa0794670 | 0.803273 | 3.772028e-49 | -8.615850e-47 |
| Msa0632870 | Msa0795090 | 0.804503 | 2.093643e-49 | -8.615850e-47 |
| Msa0632870 | Msa0795920 | 0.841106 | 5.811476e-58 | -8.615850e-47 |
| Msa0632870 | Msa0798440 | 0.817379 | 3.400814e-52 | -8.615850e-47 |
| Msa0632870 | Msa0812570 | 0.811963 | 5.382196e-51 | -8.615850e-47 |
| Msa0632870 | Msa0813720 | 0.813916 | 2.009106e-51 | -8.615850e-47 |
| Msa0632870 | Msa0817730 | 0.801059 | 1.076436e-48 | -8.615850e-47 |
| Msa0632870 | Msa0824680 | 0.800369 | 1.488523e-48 | -8.615850e-47 |
| Msa0632870 | Msa0842210 | 0.819609 | 1.061457e-52 | -8.615850e-47 |
| Msa0632870 | Msa0858180 | 0.806197 | 9.244288e-50 | -8.615850e-47 |
| Msa0632870 | Msa0869120 | 0.814578 | 1.434508e-51 | -8.615850e-47 |
| Msa0632870 | Msa0870150 | 0.844070 | 9.491116e-59 | -8.615850e-47 |
| Msa0632870 | Msa0920870 | 0.800655 | 1.301671e-48 | -8.615850e-47 |
| Msa0632870 | Msa0933290 | 0.827019 | 1.971614e-54 | -8.615850e-47 |
| Msa0632870 | Msa0935850 | 0.817245 | 3.645317e-52 | -8.615850e-47 |
| Msa0632870 | Msa0942070 | 0.800860 | 1.181926e-48 | -8.615850e-47 |
| Msa0632870 | Msa0947760 | 0.807979 | 3.880208e-50 | -8.615850e-47 |
| Msa0632870 | Msa0982270 | 0.802534 | 5.361183e-49 | -8.615850e-47 |
| Msa0632870 | Msa0982430 | 0.802026 | 6.819098e-49 | -8.615850e-47 |
| Msa0632870 | Msa0999970 | 0.817548 | 3.114827e-52 | -8.615850e-47 |
| Msa0632870 | Msa1009820 | 0.813619 | 2.334963e-51 | -8.615850e-47 |
| Msa0632870 | Msa1012830 | 0.854308 | 1.341796e-61 | -8.615850e-47 |
| Msa0632870 | Msa1046020 | 0.832441 | 9.437727e-56 | -8.615850e-47 |
| Msa0632870 | Msa1046060 | 0.834359 | 3.137692e-56 | -8.615850e-47 |
| Msa0632870 | Msa1051200 | 0.847849 | 8.910853e-60 | -8.615850e-47 |
| Msa0632870 | Msa1084470 | 0.807597 | 4.676418e-50 | -8.615850e-47 |
| Msa0632870 | Msa1089020 | 0.815846 | 7.497944e-52 | -8.615850e-47 |
| Msa0632870 | Msa1091100 | 0.815950 | 7.107520e-52 | -8.615850e-47 |
| Msa0632870 | Msa1103480 | 0.801079 | 1.066595e-48 | -8.615850e-47 |
| Msa0632870 | Msa1116130 | -0.811153 | 8.071344e-51 | -8.615850e-47 |
| Msa0632870 | Msa1132890 | 0.808409 | 3.141572e-50 | -8.615850e-47 |
| Msa0632870 | Msa1134090 | 0.815953 | 7.098170e-52 | -8.615850e-47 |
| Msa0632870 | Msa1137700 | 0.836570 | 8.662825e-57 | -8.615850e-47 |
| Msa0632870 | Msa1143930 | -0.848755 | 5.008523e-60 | -8.615850e-47 |
| Msa0632870 | Msa1171870 | 0.845616 | 3.634037e-59 | -8.615850e-47 |
| Msa0632870 | Msa1173140 | 0.818822 | 1.604011e-52 | -8.615850e-47 |
| Msa0632870 | Msa1186950 | -0.803470 | 3.433217e-49 | -8.615850e-47 |
| Msa0632870 | Msa1199560 | 0.814355 | 1.607499e-51 | -8.615850e-47 |
| Msa0632870 | Msa1203250 | 0.828599 | 8.219189e-55 | -8.615850e-47 |
| Msa0632870 | Msa1204090 | 0.809910 | 1.497807e-50 | -8.615850e-47 |
| Msa0632870 | Msa1211890 | 0.830938 | 2.214499e-55 | -8.615850e-47 |
| Msa0632870 | Msa1217430 | -0.827140 | 1.843607e-54 | -8.615850e-47 |
| Msa0632870 | Msa1224810 | 0.834756 | 2.493678e-56 | -8.615850e-47 |
| Msa0632870 | Msa1259490 | -0.802272 | 6.070136e-49 | -8.615850e-47 |
| Msa0632870 | Msa1260130 | 0.858184 | 9.808746e-63 | -8.615850e-47 |
| Msa0632870 | Msa1262920 | 0.843281 | 1.543581e-58 | -8.615850e-47 |
| Msa0632870 | Msa1271210 | 0.824472 | 7.923059e-54 | -8.615850e-47 |
| Msa0632870 | Msa1275360 | 0.828379 | 9.288432e-55 | -8.615850e-47 |
| Msa0632870 | Msa1279210 | 0.830687 | 2.551598e-55 | -8.615850e-47 |
| Msa0632870 | Msa1287460 | 0.804193 | 2.429270e-49 | -8.615850e-47 |
| Msa0632870 | Msa1294610 | -0.800457 | 1.428443e-48 | -8.615850e-47 |
| Msa0632870 | Msa1299180 | -0.800858 | 1.183306e-48 | -8.615850e-47 |
| Msa0632870 | Msa1300050 | 0.860426 | 2.082684e-63 | -8.615850e-47 |
| Msa0632870 | Msa1302100 | 0.850166 | 2.024133e-60 | -8.615850e-47 |
| Msa0632870 | Msa1302190 | -0.851766 | 7.164971e-61 | -8.615850e-47 |
| Msa0632870 | Msa1302640 | 0.810173 | 1.314747e-50 | -8.615850e-47 |
| Msa0632870 | Msa1306430 | 0.839214 | 1.811571e-57 | -8.615850e-47 |
| Msa0632870 | Msa1328700 | 0.822259 | 2.606148e-53 | -8.615850e-47 |
| Msa0632870 | Msa1342640 | -0.808232 | 3.426984e-50 | -8.615850e-47 |
| Msa0632870 | Msa1386780 | 0.833584 | 4.904145e-56 | -8.615850e-47 |
| Msa0632870 | Msa1390180 | 0.800017 | 1.755666e-48 | -8.615850e-47 |
| Msa0632870 | Msa1391490 | 0.827487 | 1.522748e-54 | -8.615850e-47 |
| Msa0632870 | Msa1398800 | 0.826795 | 2.229342e-54 | -8.615850e-47 |
| Msa0632870 | Msa1403340 | 0.813461 | 2.530523e-51 | -8.615850e-47 |
| Msa0632870 | Msa1403680 | 0.802003 | 6.893612e-49 | -8.615850e-47 |
| Msa0632870 | Msa1410100 | 0.801735 | 7.825428e-49 | -8.615850e-47 |
| Msa0632870 | Msa1419800 | -0.802737 | 4.868160e-49 | -8.615850e-47 |
| Msa0632870 | Msa1419960 | 0.806520 | 7.904603e-50 | -8.615850e-47 |
| Msa0632870 | Msa1420990 | 0.816411 | 5.606241e-52 | -8.615850e-47 |
| Msa0632870 | Msa1432400 | 0.820300 | 7.376987e-53 | -8.615850e-47 |
| Msa0632870 | Msa1440000 | 0.818476 | 1.921696e-52 | -8.615850e-47 |
| Msa0632870 | Msa1444310 | 0.804039 | 2.616130e-49 | -8.615850e-47 |
| Msa0632870 | Msa1453620 | 0.827868 | 1.233472e-54 | -8.615850e-47 |
| Msa0632870 | Msa1453780 | -0.815508 | 8.916606e-52 | -8.615850e-47 |
| Msa0632870 | Msa1454480 | 0.805924 | 1.055545e-49 | -8.615850e-47 |
| Msa0632870 | Msa1465960 | 0.844389 | 7.792936e-59 | -8.615850e-47 |
| Msa0142420 | Msa0632870 | 0.827240 | 1.744727e-54 | -8.615850e-47 |
| Msa0142980 | Msa0632870 | 0.810698 | 1.012988e-50 | -8.615850e-47 |
| Msa0145730 | Msa0632870 | 0.808812 | 2.576362e-50 | -8.615850e-47 |
| Msa0150820 | Msa0632870 | 0.805863 | 1.087026e-49 | -8.615850e-47 |
| Msa0159340 | Msa0632870 | 0.800495 | 1.402923e-48 | -8.615850e-47 |
| Msa0160550 | Msa0632870 | 0.853252 | 2.701490e-61 | -8.615850e-47 |
| Msa0169140 | Msa0632870 | -0.804023 | 2.636129e-49 | -8.615850e-47 |
| Msa0172780 | Msa0632870 | 0.819973 | 8.765973e-53 | -8.615850e-47 |
| Msa0172970 | Msa0632870 | 0.822287 | 2.567685e-53 | -8.615850e-47 |
| Msa0173740 | Msa0632870 | 0.813866 | 2.060895e-51 | -8.615850e-47 |
| Msa0173820 | Msa0632870 | 0.814206 | 1.734004e-51 | -8.615850e-47 |
| Msa0173830 | Msa0632870 | 0.806100 | 9.691000e-50 | -8.615850e-47 |
| Msa0193120 | Msa0632870 | 0.804687 | 1.916297e-49 | -8.615850e-47 |
| Msa0220720 | Msa0632870 | 0.800374 | 1.485263e-48 | -8.615850e-47 |
| Msa0228070 | Msa0632870 | 0.810909 | 9.116761e-51 | -8.615850e-47 |
| Msa0238250 | Msa0632870 | -0.813208 | 2.875916e-51 | -8.615850e-47 |
| Msa0369220 | Msa0632870 | 0.817379 | 3.399942e-52 | -8.615850e-47 |
| Msa0372340 | Msa0632870 | 0.853663 | 2.058618e-61 | -8.615850e-47 |
| Msa0374750 | Msa0632870 | 0.813136 | 2.981237e-51 | -8.615850e-47 |
| Msa0379410 | Msa0632870 | 0.843832 | 1.099348e-58 | -8.615850e-47 |
| Msa0380040 | Msa0632870 | 0.818751 | 1.664194e-52 | -8.615850e-47 |
| Msa0380890 | Msa0632870 | 0.812980 | 3.225841e-51 | -8.615850e-47 |
| Msa0388050 | Msa0632870 | 0.818709 | 1.701864e-52 | -8.615850e-47 |
| Msa0389810 | Msa0632870 | 0.800589 | 1.342508e-48 | -8.615850e-47 |
| Msa0397540 | Msa0632870 | 0.810293 | 1.239032e-50 | -8.615850e-47 |
| Msa0398950 | Msa0632870 | 0.804456 | 2.142005e-49 | -8.615850e-47 |
| Msa0399340 | Msa0632870 | 0.832325 | 1.008486e-55 | -8.615850e-47 |
| Msa0402790 | Msa0632870 | 0.818031 | 2.423317e-52 | -8.615850e-47 |
| Msa0421780 | Msa0632870 | -0.805780 | 1.131291e-49 | -8.615850e-47 |
| Msa0424040 | Msa0632870 | 0.810505 | 1.114699e-50 | -8.615850e-47 |
| Msa0429290 | Msa0632870 | 0.830744 | 2.471763e-55 | -8.615850e-47 |
| Msa0430790 | Msa0632870 | 0.810264 | 1.256487e-50 | -8.615850e-47 |
| Msa0442190 | Msa0632870 | 0.803820 | 2.904700e-49 | -8.615850e-47 |
| Msa0442200 | Msa0632870 | 0.856490 | 3.106633e-62 | -8.615850e-47 |
| Msa0465790 | Msa0632870 | 0.816262 | 6.054318e-52 | -8.615850e-47 |
| Msa0467900 | Msa0632870 | -0.819768 | 9.766448e-53 | -8.615850e-47 |
| Msa0468130 | Msa0632870 | 0.806524 | 7.890475e-50 | -8.615850e-47 |
| Msa0475580 | Msa0632870 | 0.830139 | 3.474064e-55 | -8.615850e-47 |
| Msa0267310 | Msa0632870 | 0.815771 | 7.791610e-52 | -8.615850e-47 |
| Msa0279700 | Msa0632870 | 0.803451 | 3.465023e-49 | -8.615850e-47 |
| Msa0279790 | Msa0632870 | 0.803681 | 3.104111e-49 | -8.615850e-47 |
| Msa0298700 | Msa0632870 | 0.823998 | 1.024019e-53 | -8.615850e-47 |
| Msa0299870 | Msa0632870 | 0.805316 | 1.415543e-49 | -8.615850e-47 |
| Msa0304920 | Msa0632870 | 0.801170 | 1.021780e-48 | -8.615850e-47 |
| Msa0318980 | Msa0632870 | 0.806420 | 8.298804e-50 | -8.615850e-47 |
| Msa0336420 | Msa0632870 | 0.802425 | 5.644507e-49 | -8.615850e-47 |
| Msa0337240 | Msa0632870 | 0.807833 | 4.166976e-50 | -8.615850e-47 |
| Msa0351080 | Msa0632870 | 0.800536 | 1.376154e-48 | -8.615850e-47 |
| Msa0358170 | Msa0632870 | 0.822995 | 1.757348e-53 | -8.615850e-47 |
| Msa0504020 | Msa0632870 | 0.836079 | 1.154607e-56 | -8.615850e-47 |
| Msa0504450 | Msa0632870 | 0.843397 | 1.436577e-58 | -8.615850e-47 |
| Msa0508870 | Msa0632870 | 0.804386 | 2.214378e-49 | -8.615850e-47 |
| Msa0509390 | Msa0632870 | 0.828719 | 7.688768e-55 | -8.615850e-47 |
| Msa0512750 | Msa0632870 | 0.813485 | 2.499477e-51 | -8.615850e-47 |
| Msa0515010 | Msa0632870 | 0.815772 | 7.788036e-52 | -8.615850e-47 |
| Msa0519220 | Msa0632870 | 0.849440 | 3.229984e-60 | -8.615850e-47 |
| Msa0536650 | Msa0632870 | 0.881020 | 3.394307e-70 | -8.615850e-47 |
| Msa0539750 | Msa0632870 | 0.805299 | 1.427563e-49 | -8.615850e-47 |
| Msa0540070 | Msa0632870 | 0.800153 | 1.647333e-48 | -8.615850e-47 |
| Msa0541360 | Msa0632870 | 0.807105 | 5.946873e-50 | -8.615850e-47 |
| Msa0545080 | Msa0632870 | 0.816703 | 4.824178e-52 | -8.615850e-47 |
| Msa0553220 | Msa0632870 | -0.841748 | 3.936403e-58 | -8.615850e-47 |
| Msa0555450 | Msa0632870 | 0.804270 | 2.341692e-49 | -8.615850e-47 |
| Msa0580420 | Msa0632870 | 0.834079 | 3.686734e-56 | -8.615850e-47 |
| Msa0592720 | Msa0632870 | 0.885603 | 7.049616e-72 | -8.615850e-47 |
| Msa0598810 | Msa0632870 | 0.805211 | 1.489500e-49 | -8.615850e-47 |
| Msa0598860 | Msa0632870 | 0.802296 | 6.002056e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632870 | MtrunA17_Chr4g0010791 | 98.305 | 177 | 3 | 0 | 25 | 201 | 110 | 286 | 5.26e-127 | 359 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632870 | AT1G17330.1 | 74.576 | 177 | 45 | 0 | 25 | 201 | 46 | 222 | 8.29e-93 | 270 |
Find 71 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAGCTTCTCATGAAAA+TGG | 0.305518 | 4_3:+17276812 | None:intergenic |
| CGAGCAAGGTGTGCTGTTGC+AGG | 0.313780 | 4_3:-17278592 | Msa0632870:five_prime_UTR |
| TTTGAAGATCATCAAAGAAA+TGG | 0.317424 | 4_3:-17277860 | Msa0632870:CDS |
| GTTCACATCTTGTAAGTTGC+AGG | 0.325616 | 4_3:-17276386 | Msa0632870:three_prime_UTR |
| ACTGAACGGAGTCCAGAATT+TGG | 0.354191 | 4_3:-17277159 | Msa0632870:CDS |
| CTCATGATGCGGCACATGTT+TGG | 0.359860 | 4_3:-17278480 | Msa0632870:CDS |
| TCTTGGACAACACCAAATTC+TGG | 0.364335 | 4_3:+17277147 | None:intergenic |
| CTTGATGCTATTGGTGCTAT+AGG | 0.384019 | 4_3:-17277114 | Msa0632870:intron |
| TTCTATGCTTTCTGTCTGTA+AGG | 0.386317 | 4_3:-17279540 | Msa0632870:intron |
| GCTGCACTGCTCCATGATAT+AGG | 0.400352 | 4_3:-17278293 | Msa0632870:intron |
| TTGGAGCATGAAGCATGAAT+TGG | 0.401195 | 4_3:+17276354 | None:intergenic |
| CTCTCCCTTGCCACCGAGGA+AGG | 0.423845 | 4_3:-17278439 | Msa0632870:CDS |
| TCTTTAGATAGATCAGATCT+TGG | 0.427558 | 4_3:+17276871 | None:intergenic |
| ATAGTTGCTTACCTATATCA+TGG | 0.428518 | 4_3:+17278282 | None:intergenic |
| TCTAGAGGAAGAGGGAGTTG+AGG | 0.432567 | 4_3:-17277902 | Msa0632870:CDS |
| TTGAAGATCATCAAAGAAAT+GGG | 0.433662 | 4_3:-17277859 | Msa0632870:intron |
| AAAGAGGAGGTGACGGGAAA+AGG | 0.434863 | 4_3:-17277186 | Msa0632870:CDS |
| CATCAAGCCTATCAGCATCT+TGG | 0.454662 | 4_3:+17277130 | None:intergenic |
| ATTGCACGTTGCTTCACATT+CGG | 0.458789 | 4_3:-17276934 | Msa0632870:CDS |
| GGAGAGAAGGCACAAGTTCA+TGG | 0.459970 | 4_3:-17276566 | Msa0632870:CDS |
| GGCAAAGGAGGGCGGAGAGA+AGG | 0.460292 | 4_3:-17276579 | Msa0632870:CDS |
| GCTGATAGGCTTGATGCTAT+TGG | 0.472702 | 4_3:-17277123 | Msa0632870:CDS |
| GTGTTGTCCAAGATGCTGAT+AGG | 0.474522 | 4_3:-17277137 | Msa0632870:CDS |
| TCAGATCTTGGCAAAATAGC+AGG | 0.474774 | 4_3:+17276883 | None:intergenic |
| AGAGGCCTTCCTCGGTGGCA+AGG | 0.489940 | 4_3:+17278434 | None:intergenic |
| TCATCATATCTTTAAGCTTG+AGG | 0.493256 | 4_3:+17276794 | None:intergenic |
| GGCCTCTGACCCGCATTCCA+TGG | 0.494151 | 4_3:-17278418 | Msa0632870:CDS |
| ATGAATAATGAAAATATCTC+AGG | 0.497746 | 4_3:+17279633 | None:intergenic |
| ATGATGCGGCACATGTTTGG+AGG | 0.501839 | 4_3:-17278477 | Msa0632870:CDS |
| CACGTTGCTTCACATTCGGC+GGG | 0.506510 | 4_3:-17276930 | Msa0632870:CDS |
| TAGGATAGTTACAATTTCCA+TGG | 0.508969 | 4_3:+17278401 | None:intergenic |
| TGCGGGTCAGAGGCCTTCCT+CGG | 0.510714 | 4_3:+17278426 | None:intergenic |
| CATTAGTTTCTCTCAGTCAA+AGG | 0.514420 | 4_3:-17279605 | Msa0632870:five_prime_UTR |
| GAGGCCTTCCTCGGTGGCAA+GGG | 0.520395 | 4_3:+17278435 | None:intergenic |
| CATTTCAGGCTGGGCAAAGG+AGG | 0.525095 | 4_3:-17276591 | Msa0632870:intron |
| TCAAAGAGTTCTACGACGAA+TGG | 0.526682 | 4_3:-17276534 | Msa0632870:CDS |
| AATAAGAAAGGCTGAGGCGT+TGG | 0.532558 | 4_3:-17278533 | Msa0632870:five_prime_UTR |
| ATTTCAGGCTGGGCAAAGGA+GGG | 0.541101 | 4_3:-17276590 | Msa0632870:intron |
| TTACAATTTCCATGGAATGC+GGG | 0.542408 | 4_3:+17278409 | None:intergenic |
| ATCCATTTCAGGCTGGGCAA+AGG | 0.545547 | 4_3:-17276594 | Msa0632870:intron |
| TCAAAACCAAGGACATTGCA+TGG | 0.551067 | 4_3:+17276316 | None:intergenic |
| TGGTTGAGAAAGCGATGAAA+GGG | 0.553284 | 4_3:-17278513 | Msa0632870:five_prime_UTR |
| TTCCATGGAATGCGGGTCAG+AGG | 0.560277 | 4_3:+17278416 | None:intergenic |
| TTGGTTGAGAAAGCGATGAA+AGG | 0.561138 | 4_3:-17278514 | Msa0632870:five_prime_UTR |
| CAAAACCAAGGACATTGCAT+GGG | 0.568978 | 4_3:+17276317 | None:intergenic |
| CGGTGGCAAGGGAGAGAGCA+AGG | 0.570258 | 4_3:+17278446 | None:intergenic |
| AAGAGAGACGATGGAAAAGA+CGG | 0.574216 | 4_3:-17278560 | Msa0632870:five_prime_UTR |
| GATCATATATTTCGCGAGCA+AGG | 0.574943 | 4_3:-17278606 | Msa0632870:five_prime_UTR |
| TCAGGCTGGGCAAAGGAGGG+CGG | 0.579737 | 4_3:-17276587 | Msa0632870:intron |
| TGATGCGGCACATGTTTGGA+GGG | 0.590520 | 4_3:-17278476 | Msa0632870:CDS |
| AAAGACGGACACAATAAGAA+AGG | 0.590777 | 4_3:-17278545 | Msa0632870:five_prime_UTR |
| ACAGACAGAAAGCATAGAAG+TGG | 0.592793 | 4_3:+17279544 | None:intergenic |
| GTTACAATTTCCATGGAATG+CGG | 0.593875 | 4_3:+17278408 | None:intergenic |
| TGCTCTCTCCCTTGCCACCG+AGG | 0.611184 | 4_3:-17278443 | Msa0632870:CDS |
| AATAATGAAAATATCTCAGG+AGG | 0.622199 | 4_3:+17279636 | None:intergenic |
| GCACGTTGCTTCACATTCGG+CGG | 0.624085 | 4_3:-17276931 | Msa0632870:CDS |
| GGGTCAGAGGCCTTCCTCGG+TGG | 0.624706 | 4_3:+17278429 | None:intergenic |
| CATTCGGCGGGAGTAAGAAG+AGG | 0.625922 | 4_3:-17276918 | Msa0632870:CDS |
| GAGTTCTACGACGAATGGAA+CGG | 0.628121 | 4_3:-17276529 | Msa0632870:CDS |
| AAAACCAAGGACATTGCATG+GGG | 0.628488 | 4_3:+17276318 | None:intergenic |
| GGACACAATAAGAAAGGCTG+AGG | 0.631192 | 4_3:-17278539 | Msa0632870:five_prime_UTR |
| CGTTGTAACAAGAGAGACGA+TGG | 0.634960 | 4_3:-17278569 | Msa0632870:five_prime_UTR |
| GAATGACGCTTCTCATGATG+CGG | 0.637516 | 4_3:-17278491 | Msa0632870:CDS |
| ATTCGGCGGGAGTAAGAAGA+GGG | 0.649996 | 4_3:-17276917 | Msa0632870:CDS |
| TAAAGATATGATGAAAACCA+AGG | 0.666397 | 4_3:-17276785 | Msa0632870:intron |
| TAGTCTGGCCTTCAAAACCA+AGG | 0.683192 | 4_3:+17276305 | None:intergenic |
| CGGGAAAAGGAACTACTGAA+CGG | 0.693020 | 4_3:-17277173 | Msa0632870:CDS |
| TAGCATGCAAAACAAAACGC+AGG | 0.702388 | 4_3:+17279580 | None:intergenic |
| CAGGTGACTACAAATACCTG+AGG | 0.728521 | 4_3:-17278159 | Msa0632870:intron |
| GAGAAGGCACAAGTTCATGG+AGG | 0.729226 | 4_3:-17276563 | Msa0632870:CDS |
| AAACCAAGGACATTGCATGG+GGG | 0.759450 | 4_3:+17276319 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATAAAGTAATATA+AGG | - | chr4_3:17278173-17278192 | Msa0632870:intron | 10.0% |
| !! | AAATAATAGTATAAAAACAG+AGG | + | chr4_3:17276453-17276472 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAGTACTAATTT+AGG | - | chr4_3:17278293-17278312 | Msa0632870:intron | 15.0% |
| !! | TAATTTCCAATAAATAAACA+AGG | + | chr4_3:17278682-17278701 | None:intergenic | 15.0% |
| !! | ATGAATAATGAAAATATCTC+AGG | + | chr4_3:17276301-17276320 | None:intergenic | 20.0% |
| !!! | CAAAATAATCACTTTTGTTT+AGG | - | chr4_3:17276478-17276497 | Msa0632870:three_prime_UTR | 20.0% |
| !!! | ATTTATACTTTCTTTTCTAC+AGG | - | chr4_3:17276826-17276845 | Msa0632870:CDS | 20.0% |
| !!! | GATAATGGTAATATAGAAAT+AGG | + | chr4_3:17277563-17277582 | None:intergenic | 20.0% |
| !! | TATGAAGGTTTAAAAGATAA+TGG | + | chr4_3:17277578-17277597 | None:intergenic | 20.0% |
| !!! | TTATCTTTTAAACCTTCATA+TGG | - | chr4_3:17277578-17277597 | Msa0632870:intron | 20.0% |
| !! | ATTTATTAGCAAACTACAAT+TGG | + | chr4_3:17277734-17277753 | None:intergenic | 20.0% |
| !! | TGAACAAAATGAAAAACAAA+AGG | + | chr4_3:17277932-17277951 | None:intergenic | 20.0% |
| !! | TGATAATATAATCTGTTTCA+TGG | - | chr4_3:17278385-17278404 | Msa0632870:intron | 20.0% |
| !! | TTATACAAAAGATATGAGAA+GGG | + | chr4_3:17278570-17278589 | None:intergenic | 20.0% |
| !! | ATTATACAAAAGATATGAGA+AGG | + | chr4_3:17278571-17278590 | None:intergenic | 20.0% |
| !!! | ACTTATCCTTGTTTATTTAT+TGG | - | chr4_3:17278673-17278692 | Msa0632870:intron | 20.0% |
| !!! | TTTTGGGTTAAAATTTGATA+AGG | + | chr4_3:17279197-17279216 | None:intergenic | 20.0% |
| !! | ACTTGTAAAAAAGACAAAAA+TGG | - | chr4_3:17279488-17279507 | Msa0632870:intron | 20.0% |
| ! | AATCCTAATACATTGAATCA+GGG | + | chr4_3:17276716-17276735 | None:intergenic | 25.0% |
| ! | TAATCCTAATACATTGAATC+AGG | + | chr4_3:17276717-17276736 | None:intergenic | 25.0% |
| ! | TGATTCAATGTATTAGGATT+AGG | - | chr4_3:17276716-17276735 | Msa0632870:intron | 25.0% |
| !!! | GCTTTTCTAAGTTTTAACTA+CGG | - | chr4_3:17277102-17277121 | Msa0632870:intron | 25.0% |
| ! | TTATCATGAAGTTAAGAAGT+GGG | + | chr4_3:17277128-17277147 | None:intergenic | 25.0% |
| ! | TTTATCATGAAGTTAAGAAG+TGG | + | chr4_3:17277129-17277148 | None:intergenic | 25.0% |
| !!! | TATAATTTGAAACCAGCTTT+TGG | - | chr4_3:17277172-17277191 | Msa0632870:CDS | 25.0% |
| !!! | TGATTACTTTTTGACAAACA+TGG | - | chr4_3:17277204-17277223 | Msa0632870:intron | 25.0% |
| !!! | GATTACTTTTTGACAAACAT+GGG | - | chr4_3:17277205-17277224 | Msa0632870:intron | 25.0% |
| ! | GTAATATAGAAATAGGAAGA+AGG | + | chr4_3:17277556-17277575 | None:intergenic | 25.0% |
| ! | AAAATGGAAAAATGAGAATG+AGG | + | chr4_3:17277607-17277626 | None:intergenic | 25.0% |
| !!! | CATTCTCATTTTTCCATTTT+AGG | - | chr4_3:17277607-17277626 | Msa0632870:intron | 25.0% |
| ! | TATTTATACTTACTAACCTC+AGG | + | chr4_3:17277791-17277810 | None:intergenic | 25.0% |
| !! | AACTGTTGAAAATTTTCTAG+AGG | - | chr4_3:17278014-17278033 | Msa0632870:intron | 25.0% |
| ! | TTTGAAGATCATCAAAGAAA+TGG | - | chr4_3:17278071-17278090 | Msa0632870:intron | 25.0% |
| ! | TTGAAGATCATCAAAGAAAT+GGG | - | chr4_3:17278072-17278091 | Msa0632870:intron | 25.0% |
| ! | ACATGAAAAAGTAAGAACTT+AGG | + | chr4_3:17278133-17278152 | None:intergenic | 25.0% |
| ! | CTTTAATTAGAGAACAGAAA+AGG | + | chr4_3:17278231-17278250 | None:intergenic | 25.0% |
| !!! | TTAATTTTGATGCATGATCT+CGG | - | chr4_3:17278358-17278377 | Msa0632870:intron | 25.0% |
| ! | TATCCTATTGCTAGAAAATT+GGG | - | chr4_3:17278857-17278876 | Msa0632870:intron | 25.0% |
| ! | AGAAAAATACATGAACAAAG+AGG | - | chr4_3:17279080-17279099 | Msa0632870:five_prime_UTR | 25.0% |
| ! | TAAAGATATGATGAAAACCA+AGG | - | chr4_3:17279146-17279165 | Msa0632870:intron | 25.0% |
| ! | GGTCAATAAAATTATAGTAG+AGG | + | chr4_3:17279176-17279195 | None:intergenic | 25.0% |
| ! | ATTTTGTTAGAATGTGAGTG+AGG | - | chr4_3:17276526-17276545 | Msa0632870:CDS | 30.0% |
| ! | AAAAGTGTGTACTGTGTAAA+AGG | - | chr4_3:17276560-17276579 | Msa0632870:CDS | 30.0% |
| TAATGATACAAACATCCTCA+AGG | - | chr4_3:17276794-17276813 | Msa0632870:CDS | 30.0% | |
| ATAAATCATCAAAAGCCTTG+AGG | + | chr4_3:17276812-17276831 | None:intergenic | 30.0% | |
| ! | TACTAAAGTTGCGTTTTTGT+TGG | - | chr4_3:17276850-17276869 | Msa0632870:CDS | 30.0% |
| !! | AAGTTGAGTTGAGTTGAATT+AGG | - | chr4_3:17277231-17277250 | Msa0632870:intron | 30.0% |
| TAGGATAGTTACAATTTCCA+TGG | + | chr4_3:17277533-17277552 | None:intergenic | 30.0% | |
| TATAGAAATAGGAAGAAGGT+AGG | + | chr4_3:17277552-17277571 | None:intergenic | 30.0% | |
| ATAGTTGCTTACCTATATCA+TGG | + | chr4_3:17277652-17277671 | None:intergenic | 30.0% | |
| AGGTAAGCAACTATAATTGT+AGG | - | chr4_3:17277658-17277677 | Msa0632870:intron | 30.0% | |
| ATAAAAAACCACACACTACA+CGG | + | chr4_3:17277696-17277715 | None:intergenic | 30.0% | |
| !! | TTTACTTTGTTGATAACTGC+AGG | - | chr4_3:17277753-17277772 | Msa0632870:intron | 30.0% |
| AGTATTAGCTCATATGAGAA+GGG | + | chr4_3:17277965-17277984 | None:intergenic | 30.0% | |
| !! | AGCTAATACTGTGTCATTTA+GGG | - | chr4_3:17277975-17277994 | Msa0632870:intron | 30.0% |
| !!! | TCAACAGTTTTTTCTTCAGA+TGG | + | chr4_3:17278003-17278022 | None:intergenic | 30.0% |
| !! | TGAAAATTTTCTAGAGGAAG+AGG | - | chr4_3:17278020-17278039 | Msa0632870:intron | 30.0% |
| !! | GAAAATTTTCTAGAGGAAGA+GGG | - | chr4_3:17278021-17278040 | Msa0632870:intron | 30.0% |
| GTATAATTCCTTCCAAAAGT+TGG | - | chr4_3:17278584-17278603 | Msa0632870:five_prime_UTR | 30.0% | |
| AGGATAAGTTGCAAACAAAA+TGG | + | chr4_3:17278662-17278681 | None:intergenic | 30.0% | |
| !! | CCTCTTTAAAACCTGAATAT+TGG | + | chr4_3:17278732-17278751 | None:intergenic | 30.0% |
| !!! | CCAATATTCAGGTTTTAAAG+AGG | - | chr4_3:17278729-17278748 | Msa0632870:intron | 30.0% |
| !!! | ATATTCAGGTTTTAAAGAGG+AGG | - | chr4_3:17278732-17278751 | Msa0632870:intron | 30.0% |
| GTATCCTATTGCTAGAAAAT+TGG | - | chr4_3:17278856-17278875 | Msa0632870:intron | 30.0% | |
| !! | ATTCCCAATTTTCTAGCAAT+AGG | + | chr4_3:17278863-17278882 | None:intergenic | 30.0% |
| GTCATAATTCTGCATTCAAA+GGG | + | chr4_3:17278890-17278909 | None:intergenic | 30.0% | |
| TGTCATAATTCTGCATTCAA+AGG | + | chr4_3:17278891-17278910 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGCCTTCAATATT+AGG | - | chr4_3:17278973-17278992 | Msa0632870:intron | 30.0% |
| TCTTTAGATAGATCAGATCT+TGG | + | chr4_3:17279063-17279082 | None:intergenic | 30.0% | |
| TCATCATATCTTTAAGCTTG+AGG | + | chr4_3:17279140-17279159 | None:intergenic | 30.0% | |
| !!! | TTCACGCTTAGTCTTTTTTT+GGG | + | chr4_3:17279213-17279232 | None:intergenic | 30.0% |
| !!! | TTTCACGCTTAGTCTTTTTT+TGG | + | chr4_3:17279214-17279233 | None:intergenic | 30.0% |
| AAGAATGCAGCAGATAAATT+TGG | + | chr4_3:17279257-17279276 | None:intergenic | 30.0% | |
| TGATTTAAGCTATCCATTTC+AGG | - | chr4_3:17279326-17279345 | Msa0632870:intron | 30.0% | |
| ! | CATTAGTTTCTCTCAGTCAA+AGG | - | chr4_3:17276326-17276345 | Msa0632870:three_prime_UTR | 35.0% |
| TTCTATGCTTTCTGTCTGTA+AGG | - | chr4_3:17276391-17276410 | Msa0632870:three_prime_UTR | 35.0% | |
| ! | TAGAATGTGAGTGAGGTTTT+AGG | - | chr4_3:17276533-17276552 | Msa0632870:CDS | 35.0% |
| ! | AGAATGTGAGTGAGGTTTTA+GGG | - | chr4_3:17276534-17276553 | Msa0632870:CDS | 35.0% |
| TTTAAGGGTCTTGAAAACCT+TGG | - | chr4_3:17276616-17276635 | Msa0632870:intron | 35.0% | |
| ATAGCGAAATTCGAACAGTA+TGG | + | chr4_3:17277003-17277022 | None:intergenic | 35.0% | |
| ACAACACTATGTTCAACTTG+TGG | - | chr4_3:17277035-17277054 | Msa0632870:intron | 35.0% | |
| !! | TGAGTTGAGTTGAATTAGGT+TGG | - | chr4_3:17277235-17277254 | Msa0632870:intron | 35.0% |
| !! | TGACAGTTCTGAATGTTTCA+TGG | - | chr4_3:17277264-17277283 | Msa0632870:intron | 35.0% |
| TTCTGAATGTTTCATGGACT+AGG | - | chr4_3:17277270-17277289 | Msa0632870:intron | 35.0% | |
| ! | TCTGAATGTTTCATGGACTA+GGG | - | chr4_3:17277271-17277290 | Msa0632870:intron | 35.0% |
| AAAGACGGACACAATAAGAA+AGG | - | chr4_3:17277386-17277405 | Msa0632870:intron | 35.0% | |
| TTACAATTTCCATGGAATGC+GGG | + | chr4_3:17277525-17277544 | None:intergenic | 35.0% | |
| GTTACAATTTCCATGGAATG+CGG | + | chr4_3:17277526-17277545 | None:intergenic | 35.0% | |
| GTATTAGCTCATATGAGAAG+GGG | + | chr4_3:17277964-17277983 | None:intergenic | 35.0% | |
| CAGTATTAGCTCATATGAGA+AGG | + | chr4_3:17277966-17277985 | None:intergenic | 35.0% | |
| !! | GAGCTAATACTGTGTCATTT+AGG | - | chr4_3:17277974-17277993 | Msa0632870:intron | 35.0% |
| CATCAAAGAAATGGGTAAGT+TGG | - | chr4_3:17278080-17278099 | Msa0632870:intron | 35.0% | |
| TAAGAACTTAGGCAAGAAAC+TGG | + | chr4_3:17278122-17278141 | None:intergenic | 35.0% | |
| TTTGACATGACTTTCAAAGC+AGG | - | chr4_3:17278323-17278342 | Msa0632870:intron | 35.0% | |
| ACAAAAGATATGAGAAGGGT+AGG | + | chr4_3:17278566-17278585 | None:intergenic | 35.0% | |
| TAAGTTGCAAACAAAATGGC+AGG | + | chr4_3:17278658-17278677 | None:intergenic | 35.0% | |
| TGATGCTTCTTCCAATATTC+AGG | - | chr4_3:17278718-17278737 | Msa0632870:intron | 35.0% | |
| !! | CACGTTTTCATTTGAAGTGT+TGG | + | chr4_3:17278935-17278954 | None:intergenic | 35.0% |
| CGTGCAATTCCTAATATTGA+AGG | + | chr4_3:17278985-17279004 | None:intergenic | 35.0% | |
| ! | ATTATAGTAGAGGTGTACCT+TGG | + | chr4_3:17279166-17279185 | None:intergenic | 35.0% |
| ATGGGGGAAAAATCTACATT+TGG | + | chr4_3:17279599-17279618 | None:intergenic | 35.0% | |
| TAGCATGCAAAACAAAACGC+AGG | + | chr4_3:17276354-17276373 | None:intergenic | 40.0% | |
| ! | ACAGACAGAAAGCATAGAAG+TGG | + | chr4_3:17276390-17276409 | None:intergenic | 40.0% |
| !! | AGGCTATGAGTTAGCCTTTA+TGG | - | chr4_3:17276580-17276599 | Msa0632870:CDS | 40.0% |
| !! | CTATGAGTTAGCCTTTATGG+TGG | - | chr4_3:17276583-17276602 | Msa0632870:CDS | 40.0% |
| CAGCCCTGATTCAATGTATT+AGG | - | chr4_3:17276710-17276729 | Msa0632870:intron | 40.0% | |
| GCTAACACATGGACATCAAA+TGG | + | chr4_3:17276747-17276766 | None:intergenic | 40.0% | |
| TCAAAAGCTAGACCAAAAGC+TGG | + | chr4_3:17277187-17277206 | None:intergenic | 40.0% | |
| GATCATATATTTCGCGAGCA+AGG | - | chr4_3:17277325-17277344 | Msa0632870:intron | 40.0% | |
| AAGAGAGACGATGGAAAAGA+CGG | - | chr4_3:17277371-17277390 | Msa0632870:intron | 40.0% | |
| TTGGTTGAGAAAGCGATGAA+AGG | - | chr4_3:17277417-17277436 | Msa0632870:intron | 40.0% | |
| TGGTTGAGAAAGCGATGAAA+GGG | - | chr4_3:17277418-17277437 | Msa0632870:intron | 40.0% | |
| ! | AGTGTTGTTAGCCAACTTCA+AGG | - | chr4_3:17277882-17277901 | Msa0632870:CDS | 40.0% |
| AAACAACCAAGCCTTGAAGT+TGG | + | chr4_3:17277896-17277915 | None:intergenic | 40.0% | |
| AGTACTATCCCTGATGATCA+TGG | - | chr4_3:17278534-17278553 | Msa0632870:five_prime_UTR | 40.0% | |
| AAGATATGAGAAGGGTAGGA+AGG | + | chr4_3:17278562-17278581 | None:intergenic | 40.0% | |
| !!! | AGGTTTTAAAGAGGAGGTGA+CGG | - | chr4_3:17278738-17278757 | Msa0632870:intron | 40.0% |
| TCTTGGACAACACCAAATTC+TGG | + | chr4_3:17278787-17278806 | None:intergenic | 40.0% | |
| !! | CTTGATGCTATTGGTGCTAT+AGG | - | chr4_3:17278817-17278836 | Msa0632870:intron | 40.0% |
| AGAATTATGACAGCTCTTCG+AGG | - | chr4_3:17278899-17278918 | Msa0632870:intron | 40.0% | |
| ATTGCACGTTGCTTCACATT+CGG | - | chr4_3:17278997-17279016 | Msa0632870:intron | 40.0% | |
| TCAGATCTTGGCAAAATAGC+AGG | + | chr4_3:17279051-17279070 | None:intergenic | 40.0% | |
| TGAGGAGCTTCTCATGAAAA+TGG | + | chr4_3:17279122-17279141 | None:intergenic | 40.0% | |
| TTAAGCTATCCATTTCAGGC+TGG | - | chr4_3:17279330-17279349 | Msa0632870:intron | 40.0% | |
| TAAGCTATCCATTTCAGGCT+GGG | - | chr4_3:17279331-17279350 | Msa0632870:intron | 40.0% | |
| TCAAAGAGTTCTACGACGAA+TGG | - | chr4_3:17279397-17279416 | Msa0632870:intron | 40.0% | |
| GTTCACATCTTGTAAGTTGC+AGG | - | chr4_3:17279545-17279564 | Msa0632870:five_prime_UTR | 40.0% | |
| TTGGAGCATGAAGCATGAAT+TGG | + | chr4_3:17279580-17279599 | None:intergenic | 40.0% | |
| AAAACCAAGGACATTGCATG+GGG | + | chr4_3:17279616-17279635 | None:intergenic | 40.0% | |
| CAAAACCAAGGACATTGCAT+GGG | + | chr4_3:17279617-17279636 | None:intergenic | 40.0% | |
| TCAAAACCAAGGACATTGCA+TGG | + | chr4_3:17279618-17279637 | None:intergenic | 40.0% | |
| !!! | TGCAATGTCCTTGGTTTTGA+AGG | - | chr4_3:17279618-17279637 | Msa0632870:five_prime_UTR | 40.0% |
| AGCCTTTATGGTGGTCAATC+AGG | - | chr4_3:17276592-17276611 | Msa0632870:intron | 45.0% | |
| GCCTTTATGGTGGTCAATCA+GGG | - | chr4_3:17276593-17276612 | Msa0632870:intron | 45.0% | |
| ACCCTGATTGACCACCATAA+AGG | + | chr4_3:17276597-17276616 | None:intergenic | 45.0% | |
| TGGTGGTCAATCAGGGTTTA+AGG | - | chr4_3:17276600-17276619 | Msa0632870:intron | 45.0% | |
| GGTGGTCAATCAGGGTTTAA+GGG | - | chr4_3:17276601-17276620 | Msa0632870:intron | 45.0% | |
| GATGTCCATGTGTTAGCTAC+TGG | - | chr4_3:17276750-17276769 | Msa0632870:intron | 45.0% | |
| CTAAGCCAGTAGCTAACACA+TGG | + | chr4_3:17276758-17276777 | None:intergenic | 45.0% | |
| !! | CATGTGTTAGCTACTGGCTT+AGG | - | chr4_3:17276756-17276775 | Msa0632870:intron | 45.0% |
| CGTTGTAACAAGAGAGACGA+TGG | - | chr4_3:17277362-17277381 | Msa0632870:intron | 45.0% | |
| GGACACAATAAGAAAGGCTG+AGG | - | chr4_3:17277392-17277411 | Msa0632870:intron | 45.0% | |
| AATAAGAAAGGCTGAGGCGT+TGG | - | chr4_3:17277398-17277417 | Msa0632870:intron | 45.0% | |
| GAATGACGCTTCTCATGATG+CGG | - | chr4_3:17277440-17277459 | Msa0632870:intron | 45.0% | |
| AGAATGAGGCGACCATATGA+AGG | + | chr4_3:17277593-17277612 | None:intergenic | 45.0% | |
| GCAGCAAGCTCTACCTAAAA+TGG | + | chr4_3:17277623-17277642 | None:intergenic | 45.0% | |
| ATTCTTGTCCGTGTAGTGTG+TGG | - | chr4_3:17277685-17277704 | Msa0632870:intron | 45.0% | |
| CAGGTGACTACAAATACCTG+AGG | - | chr4_3:17277772-17277791 | Msa0632870:intron | 45.0% | |
| TGTTAGCCAACTTCAAGGCT+TGG | - | chr4_3:17277887-17277906 | Msa0632870:CDS | 45.0% | |
| GGAAGGAACCATGATCATCA+GGG | + | chr4_3:17278545-17278564 | None:intergenic | 45.0% | |
| AGGAAGGAACCATGATCATC+AGG | + | chr4_3:17278546-17278565 | None:intergenic | 45.0% | |
| ! | TTCAAAGACGCGCCAACTTT+TGG | + | chr4_3:17278599-17278618 | None:intergenic | 45.0% |
| !!! | GGTTTTAAAGAGGAGGTGAC+GGG | - | chr4_3:17278739-17278758 | Msa0632870:intron | 45.0% |
| CGGGAAAAGGAACTACTGAA+CGG | - | chr4_3:17278758-17278777 | Msa0632870:intron | 45.0% | |
| ACTGAACGGAGTCCAGAATT+TGG | - | chr4_3:17278772-17278791 | Msa0632870:intron | 45.0% | |
| GTGTTGTCCAAGATGCTGAT+AGG | - | chr4_3:17278794-17278813 | Msa0632870:intron | 45.0% | |
| CATCAAGCCTATCAGCATCT+TGG | + | chr4_3:17278804-17278823 | None:intergenic | 45.0% | |
| GCTGATAGGCTTGATGCTAT+TGG | - | chr4_3:17278808-17278827 | Msa0632870:intron | 45.0% | |
| GAGTTCTACGACGAATGGAA+CGG | - | chr4_3:17279402-17279421 | Msa0632870:intron | 45.0% | |
| AAACCAAGGACATTGCATGG+GGG | + | chr4_3:17279615-17279634 | None:intergenic | 45.0% | |
| ! | TAGTCTGGCCTTCAAAACCA+AGG | + | chr4_3:17279629-17279648 | None:intergenic | 45.0% |
| GGGTCTTGAAAACCTTGGTC+TGG | - | chr4_3:17276621-17276640 | Msa0632870:intron | 50.0% | |
| TGGACACTTGTGAGCAGATC+AGG | - | chr4_3:17276641-17276660 | Msa0632870:intron | 50.0% | |
| GGACACTTGTGAGCAGATCA+GGG | - | chr4_3:17276642-17276661 | Msa0632870:intron | 50.0% | |
| AGATCAGGGTTGTGCCATCT+AGG | - | chr4_3:17276656-17276675 | Msa0632870:intron | 50.0% | |
| ! | GGGTTGTGCCATCTAGGATT+CGG | - | chr4_3:17276662-17276681 | Msa0632870:intron | 50.0% |
| ! | GTGCCATCTAGGATTCGGAA+TGG | - | chr4_3:17276667-17276686 | Msa0632870:intron | 50.0% |
| CGTCCATTCCGAATCCTAGA+TGG | + | chr4_3:17276673-17276692 | None:intergenic | 50.0% | |
| !!! | TGCGTTTTTGTTGGCTCGAG+TGG | - | chr4_3:17276859-17276878 | Msa0632870:CDS | 50.0% |
| !!! | GCGTTTTTGTTGGCTCGAGT+GGG | - | chr4_3:17276860-17276879 | Msa0632870:CDS | 50.0% |
| CTCATGATGCGGCACATGTT+TGG | - | chr4_3:17277451-17277470 | Msa0632870:intron | 50.0% | |
| ATGATGCGGCACATGTTTGG+AGG | - | chr4_3:17277454-17277473 | Msa0632870:intron | 50.0% | |
| TGATGCGGCACATGTTTGGA+GGG | - | chr4_3:17277455-17277474 | Msa0632870:intron | 50.0% | |
| GCTGCACTGCTCCATGATAT+AGG | - | chr4_3:17277638-17277657 | Msa0632870:intron | 50.0% | |
| TCTAGAGGAAGAGGGAGTTG+AGG | - | chr4_3:17278029-17278048 | Msa0632870:intron | 50.0% | |
| ! | AAGACGCGCCAACTTTTGGA+AGG | + | chr4_3:17278595-17278614 | None:intergenic | 50.0% |
| !! | AAAGAGGAGGTGACGGGAAA+AGG | - | chr4_3:17278745-17278764 | Msa0632870:intron | 50.0% |
| ATTCGGCGGGAGTAAGAAGA+GGG | - | chr4_3:17279014-17279033 | Msa0632870:intron | 50.0% | |
| ATCCATTTCAGGCTGGGCAA+AGG | - | chr4_3:17279337-17279356 | Msa0632870:intron | 50.0% | |
| ATTTCAGGCTGGGCAAAGGA+GGG | - | chr4_3:17279341-17279360 | Msa0632870:intron | 50.0% | |
| ! | GGAGAGAAGGCACAAGTTCA+TGG | - | chr4_3:17279365-17279384 | Msa0632870:intron | 50.0% |
| ! | GAGAAGGCACAAGTTCATGG+AGG | - | chr4_3:17279368-17279387 | Msa0632870:intron | 50.0% |
| TTTCCCCCATGCAATGTCCT+TGG | - | chr4_3:17279609-17279628 | Msa0632870:five_prime_UTR | 50.0% | |
| GCTCACAAGTGTCCAGACCA+AGG | + | chr4_3:17276636-17276655 | None:intergenic | 55.0% | |
| TTCCATGGAATGCGGGTCAG+AGG | + | chr4_3:17277518-17277537 | None:intergenic | 55.0% | |
| GCACGTTGCTTCACATTCGG+CGG | - | chr4_3:17279000-17279019 | Msa0632870:intron | 55.0% | |
| CACGTTGCTTCACATTCGGC+GGG | - | chr4_3:17279001-17279020 | Msa0632870:intron | 55.0% | |
| CATTCGGCGGGAGTAAGAAG+AGG | - | chr4_3:17279013-17279032 | Msa0632870:intron | 55.0% | |
| CTCCTTTGCCCAGCCTGAAA+TGG | + | chr4_3:17279342-17279361 | None:intergenic | 55.0% | |
| CATTTCAGGCTGGGCAAAGG+AGG | - | chr4_3:17279340-17279359 | Msa0632870:intron | 55.0% | |
| ! | CGAGCAAGGTGTGCTGTTGC+AGG | - | chr4_3:17277339-17277358 | Msa0632870:intron | 60.0% |
| CGGTGGCAAGGGAGAGAGCA+AGG | + | chr4_3:17277488-17277507 | None:intergenic | 65.0% | |
| TGCTCTCTCCCTTGCCACCG+AGG | - | chr4_3:17277488-17277507 | Msa0632870:intron | 65.0% | |
| CTCTCCCTTGCCACCGAGGA+AGG | - | chr4_3:17277492-17277511 | Msa0632870:intron | 65.0% | |
| GAGGCCTTCCTCGGTGGCAA+GGG | + | chr4_3:17277499-17277518 | None:intergenic | 65.0% | |
| AGAGGCCTTCCTCGGTGGCA+AGG | + | chr4_3:17277500-17277519 | None:intergenic | 65.0% | |
| TGCGGGTCAGAGGCCTTCCT+CGG | + | chr4_3:17277508-17277527 | None:intergenic | 65.0% | |
| GGCCTCTGACCCGCATTCCA+TGG | - | chr4_3:17277513-17277532 | Msa0632870:intron | 65.0% | |
| TCAGGCTGGGCAAAGGAGGG+CGG | - | chr4_3:17279344-17279363 | Msa0632870:intron | 65.0% | |
| GGCAAAGGAGGGCGGAGAGA+AGG | - | chr4_3:17279352-17279371 | Msa0632870:intron | 65.0% | |
| GGGTCAGAGGCCTTCCTCGG+TGG | + | chr4_3:17277505-17277524 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 17276298 | 17279655 | 17276298 | ID=Msa0632870;Name=Msa0632870 |
| chr4_3 | mRNA | 17276298 | 17279655 | 17276298 | ID=Msa0632870-mRNA-1;Parent=Msa0632870;Name=Msa0632870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=347|1|1|1|0.87|0.88|9|221|201 |
| chr4_3 | exon | 17276298 | 17276605 | 17276298 | ID=Msa0632870-mRNA-1:exon:4864;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17276786 | 17276958 | 17276786 | ID=Msa0632870-mRNA-1:exon:4863;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17277115 | 17277213 | 17277115 | ID=Msa0632870-mRNA-1:exon:4862;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17277860 | 17277957 | 17277860 | ID=Msa0632870-mRNA-1:exon:4861;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17278160 | 17278178 | 17278160 | ID=Msa0632870-mRNA-1:exon:4860;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17278294 | 17278324 | 17278294 | ID=Msa0632870-mRNA-1:exon:4859;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17278413 | 17278661 | 17278413 | ID=Msa0632870-mRNA-1:exon:4858;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17279024 | 17279105 | 17279024 | ID=Msa0632870-mRNA-1:exon:4857;Parent=Msa0632870-mRNA-1 |
| chr4_3 | exon | 17279541 | 17279655 | 17279541 | ID=Msa0632870-mRNA-1:exon:4856;Parent=Msa0632870-mRNA-1 |
| chr4_3 | five_prime_UTR | 17279541 | 17279655 | 17279541 | ID=Msa0632870-mRNA-1:five_prime_utr;Parent=Msa0632870-mRNA-1 |
| chr4_3 | five_prime_UTR | 17279024 | 17279105 | 17279024 | ID=Msa0632870-mRNA-1:five_prime_utr;Parent=Msa0632870-mRNA-1 |
| chr4_3 | five_prime_UTR | 17278512 | 17278661 | 17278512 | ID=Msa0632870-mRNA-1:five_prime_utr;Parent=Msa0632870-mRNA-1 |
| chr4_3 | CDS | 17278413 | 17278511 | 17278413 | ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1 |
| chr4_3 | CDS | 17278294 | 17278324 | 17278294 | ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1 |
| chr4_3 | CDS | 17278160 | 17278178 | 17278160 | ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1 |
| chr4_3 | CDS | 17277860 | 17277957 | 17277860 | ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1 |
| chr4_3 | CDS | 17277115 | 17277213 | 17277115 | ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1 |
| chr4_3 | CDS | 17276786 | 17276958 | 17276786 | ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1 |
| chr4_3 | CDS | 17276519 | 17276605 | 17276519 | ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1 |
| chr4_3 | three_prime_UTR | 17276298 | 17276518 | 17276298 | ID=Msa0632870-mRNA-1:three_prime_utr;Parent=Msa0632870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
