AlfalfaGEDB | Msa0632870

M. sativa cultivar zhongmu-4 / Msa0632870

KEGG: K06950
GO: -
PFAM: PF01966.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632870	XP_039689235.1	98.305	177	3	0	25	201	47	223	2.06e-123	358

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632870	sp\|P54168\|YPGQ_BACSU	40.854	164	74	5	33	193	50	193	3.13e-24	97.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632870	G7JDD3	98.305	177	3	0	25	201	110	286	2.73e-123	359

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011960	Msa0632870	0.829884	4.010264e-55	-8.615850e-47
Msa0012040	Msa0632870	0.808664	2.771274e-50	-8.615850e-47
Msa0013050	Msa0632870	-0.859554	3.817237e-63	-8.615850e-47
Msa0023000	Msa0632870	0.806402	8.369363e-50	-8.615850e-47
Msa0025730	Msa0632870	0.800210	1.603809e-48	-8.615850e-47
Msa0028660	Msa0632870	0.800102	1.687037e-48	-8.615850e-47
Msa0030380	Msa0632870	0.807827	4.178683e-50	-8.615850e-47
Msa0032580	Msa0632870	0.824443	8.048309e-54	-8.615850e-47
Msa0032610	Msa0632870	0.821681	3.547866e-53	-8.615850e-47
Msa0036160	Msa0632870	0.849077	4.076501e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632870	MtrunA17_Chr4g0010791	98.305	177	3	0	25	201	110	286	5.26e-127	359

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0632870	AT1G17330.1	74.576	177	45	0	25	201	46	222	8.29e-93	270

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Find 71 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAGGACATTGCATG+GGG	0.628488	4_3:+17276318	None:intergenic
AAACCAAGGACATTGCATGG+GGG	0.759450	4_3:+17276319	None:intergenic
AAAGACGGACACAATAAGAA+AGG	0.590777	4_3:-17278545	Msa0632870:five_prime_UTR
AAAGAGGAGGTGACGGGAAA+AGG	0.434863	4_3:-17277186	Msa0632870:CDS
AAGAGAGACGATGGAAAAGA+CGG	0.574216	4_3:-17278560	Msa0632870:five_prime_UTR
AATAAGAAAGGCTGAGGCGT+TGG	0.532558	4_3:-17278533	Msa0632870:five_prime_UTR
AATAATGAAAATATCTCAGG+AGG	0.622199	4_3:+17279636	None:intergenic
ACAGACAGAAAGCATAGAAG+TGG	0.592793	4_3:+17279544	None:intergenic
ACTGAACGGAGTCCAGAATT+TGG	0.354191	4_3:-17277159	Msa0632870:CDS
AGAGGCCTTCCTCGGTGGCA+AGG	0.489940	4_3:+17278434	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGATACAAACATCCTCA+AGG	-	chr4_3:17276794-17276813	Msa0632870:CDS	30.0%
ATAAATCATCAAAAGCCTTG+AGG	+	chr4_3:17276812-17276831	None:intergenic	30.0%
TAGGATAGTTACAATTTCCA+TGG	+	chr4_3:17277533-17277552	None:intergenic	30.0%
TATAGAAATAGGAAGAAGGT+AGG	+	chr4_3:17277552-17277571	None:intergenic	30.0%
ATAGTTGCTTACCTATATCA+TGG	+	chr4_3:17277652-17277671	None:intergenic	30.0%
AGGTAAGCAACTATAATTGT+AGG	-	chr4_3:17277658-17277677	Msa0632870:intron	30.0%
ATAAAAAACCACACACTACA+CGG	+	chr4_3:17277696-17277715	None:intergenic	30.0%
AGTATTAGCTCATATGAGAA+GGG	+	chr4_3:17277965-17277984	None:intergenic	30.0%
GTATAATTCCTTCCAAAAGT+TGG	-	chr4_3:17278584-17278603	Msa0632870:five_prime_UTR	30.0%
AGGATAAGTTGCAAACAAAA+TGG	+	chr4_3:17278662-17278681	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	17276298	17279655	17276298	ID=Msa0632870;Name=Msa0632870
chr4_3	mRNA	17276298	17279655	17276298	ID=Msa0632870-mRNA-1;Parent=Msa0632870;Name=Msa0632870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=347\|1\|1\|1\|0.87\|0.88\|9\|221\|201
chr4_3	exon	17276298	17276605	17276298	ID=Msa0632870-mRNA-1:exon:4864;Parent=Msa0632870-mRNA-1
chr4_3	exon	17276786	17276958	17276786	ID=Msa0632870-mRNA-1:exon:4863;Parent=Msa0632870-mRNA-1
chr4_3	exon	17277115	17277213	17277115	ID=Msa0632870-mRNA-1:exon:4862;Parent=Msa0632870-mRNA-1
chr4_3	exon	17277860	17277957	17277860	ID=Msa0632870-mRNA-1:exon:4861;Parent=Msa0632870-mRNA-1
chr4_3	exon	17278160	17278178	17278160	ID=Msa0632870-mRNA-1:exon:4860;Parent=Msa0632870-mRNA-1
chr4_3	exon	17278294	17278324	17278294	ID=Msa0632870-mRNA-1:exon:4859;Parent=Msa0632870-mRNA-1
chr4_3	exon	17278413	17278661	17278413	ID=Msa0632870-mRNA-1:exon:4858;Parent=Msa0632870-mRNA-1
chr4_3	exon	17279024	17279105	17279024	ID=Msa0632870-mRNA-1:exon:4857;Parent=Msa0632870-mRNA-1
chr4_3	exon	17279541	17279655	17279541	ID=Msa0632870-mRNA-1:exon:4856;Parent=Msa0632870-mRNA-1
chr4_3	five_prime_UTR	17279541	17279655	17279541	ID=Msa0632870-mRNA-1:five_prime_utr;Parent=Msa0632870-mRNA-1
chr4_3	five_prime_UTR	17279024	17279105	17279024	ID=Msa0632870-mRNA-1:five_prime_utr;Parent=Msa0632870-mRNA-1
chr4_3	five_prime_UTR	17278512	17278661	17278512	ID=Msa0632870-mRNA-1:five_prime_utr;Parent=Msa0632870-mRNA-1
chr4_3	CDS	17278413	17278511	17278413	ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1
chr4_3	CDS	17278294	17278324	17278294	ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1
chr4_3	CDS	17278160	17278178	17278160	ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1
chr4_3	CDS	17277860	17277957	17277860	ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1
chr4_3	CDS	17277115	17277213	17277115	ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1
chr4_3	CDS	17276786	17276958	17276786	ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1
chr4_3	CDS	17276519	17276605	17276519	ID=Msa0632870-mRNA-1:cds;Parent=Msa0632870-mRNA-1
chr4_3	three_prime_UTR	17276298	17276518	17276298	ID=Msa0632870-mRNA-1:three_prime_utr;Parent=Msa0632870-mRNA-1

Gene Sequence

>Msa0632870

ATGACGCTTCTCATGATGCGGCACATGTTTGGAGGGTTCGTGACCTTGCTCTCTCCCTTGCCACCGAGGAAGGCCTCTGACCCGCATTCCATGGAAATTGTAGAGCTTGCTGCACTGCTCCATGATATAGGTGACTACAAATACCTGAGGGATCCATCTGAAGAAAAAACTGTTGAAAATTTTCTAGAGGAAGAGGGAGTTGAGGAGAACAAGAAATCAAAGATTTTGAAGATCATCAAAGAAATGGGTTTTAAAGAGGAGGTGACGGGAAAAGGAACTACTGAACGGAGTCCAGAATTTGGTGTTGTCCAAGATGCTGATAGGCTTGATGCTATTGGTGCTATAGGAATTGCACGTTGCTTCACATTCGGCGGGAGTAAGAAGAGGGCGCTGCATGATCCTGCTATTTTGCCAAGATCTGATCTATCTAAAGAAAAATACATGAACAAAGAGGAACAAACTACAATTAACCATTTTCATGAGAAGCTCCTCAAGCTTAAAGATATGATGAAAACCAAGGCTGGGCAAAGGAGGGCGGAGAGAAGGCACAAGTTCATGGAGGAGTTTGTCAAAGAGTTCTACGACGAATGGAACGGTTCAAGCTAA

Protein sequence

>Msa0632870

MTLLMMRHMFGGFVTLLSPLPPRKASDPHSMEIVELAALLHDIGDYKYLRDPSEEKTVENFLEEEGVEENKKSKILKIIKEMGFKEEVTGKGTTERSPEFGVVQDADRLDAIGAIGIARCFTFGGSKKRALHDPAILPRSDLSKEKYMNKEEQTTINHFHEKLLKLKDMMKTKAGQRRAERRHKFMEEFVKEFYDEWNGSS*