Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426080 | KEH35493.1 | 98.684 | 456 | 6 | 0 | 1 | 456 | 1 | 456 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426080 | sp|O81916|YC22_ARATH | 59.584 | 433 | 164 | 4 | 21 | 452 | 62 | 484 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426080 | A0A072V2B6 | 98.684 | 456 | 6 | 0 | 1 | 456 | 1 | 456 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa0426080 | 0.812978 | 3.228898e-51 | -8.615850e-47 |
| Msa0130360 | Msa0426080 | 0.805997 | 1.018910e-49 | -8.615850e-47 |
| Msa0426080 | Msa0426240 | 0.935499 | 7.708740e-97 | -8.615850e-47 |
| Msa0426080 | Msa0516970 | 0.930290 | 2.030276e-93 | -8.615850e-47 |
| Msa0426080 | Msa0685390 | -0.800587 | 1.344183e-48 | -8.615850e-47 |
| Msa0426080 | Msa0921860 | 0.832727 | 8.013698e-56 | -8.615850e-47 |
| Msa0426080 | Msa0958830 | 0.820165 | 7.920138e-53 | -8.615850e-47 |
| Msa0426080 | Msa1111910 | 0.802295 | 6.004773e-49 | -8.615850e-47 |
| Msa0426080 | Msa1434300 | 0.820483 | 6.698143e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426080 | MtrunA17_Chr3g0128181 | 97.807 | 456 | 6 | 1 | 1 | 456 | 26 | 477 | 0.0 | 928 |
| Msa0426080 | MtrunA17_Chr5g0428931 | 77.262 | 431 | 88 | 3 | 29 | 453 | 16 | 442 | 0.0 | 664 |
| Msa0426080 | MtrunA17_Chr8g0345661 | 64.235 | 425 | 144 | 3 | 34 | 454 | 46 | 466 | 0.0 | 546 |
| Msa0426080 | MtrunA17_Chr7g0271431 | 91.837 | 49 | 4 | 0 | 307 | 355 | 22 | 70 | 3.76e-25 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426080 | AT5G54130.2 | 74.497 | 447 | 98 | 6 | 11 | 455 | 3 | 435 | 0.0 | 683 |
| Msa0426080 | AT1G02270.1 | 59.584 | 433 | 164 | 4 | 21 | 452 | 62 | 484 | 0.0 | 540 |
| Msa0426080 | AT5G54130.4 | 75.000 | 336 | 75 | 4 | 11 | 345 | 3 | 330 | 0.0 | 526 |
| Msa0426080 | AT5G54130.3 | 74.405 | 336 | 75 | 5 | 11 | 345 | 3 | 328 | 0.0 | 517 |
| Msa0426080 | AT1G02270.2 | 58.757 | 354 | 140 | 3 | 100 | 452 | 1 | 349 | 7.44e-152 | 436 |
Find 94 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGACTATAAAGAATTTC+TGG | 0.149480 | 3_2:-76495180 | Msa0426080:intron |
| GAAGATTGTATTACGTATTC+TGG | 0.231159 | 3_2:-76495423 | Msa0426080:CDS |
| TGGTGGATTAGTATCGTTTA+AGG | 0.241206 | 3_2:+76497297 | None:intergenic |
| CGTGGTTGCAGCAGCAAATA+TGG | 0.248857 | 3_2:-76494645 | Msa0426080:intron |
| TCATTGATGCGTTTGTAAAT+AGG | 0.260373 | 3_2:+76497235 | None:intergenic |
| TCTTTGCAGCTCAATTTAAT+TGG | 0.269178 | 3_2:-76495275 | Msa0426080:intron |
| TTGAATTTGTGAAGGAGTTT+TGG | 0.271683 | 3_2:-76496926 | Msa0426080:intron |
| AGTTGGAGTGAAGCAGTATT+TGG | 0.273393 | 3_2:-76495708 | Msa0426080:CDS |
| GTCTTCTATTATTTGTCTTC+AGG | 0.288609 | 3_2:-76497034 | Msa0426080:intron |
| GTGATGCATTCGCATTTCTA+AGG | 0.292926 | 3_2:-76495455 | Msa0426080:CDS |
| GTTGAGTGAGGAAGAGATAA+AGG | 0.304033 | 3_2:-76495240 | Msa0426080:CDS |
| AATGGCGAAACGGTGAAATT+AGG | 0.348821 | 3_2:-76496336 | Msa0426080:CDS |
| GGCAAGGAATCATAGGATAT+TGG | 0.361655 | 3_2:-76497076 | Msa0426080:CDS |
| AAGAGACGACAACAAGAATA+AGG | 0.370878 | 3_2:-76494602 | Msa0426080:CDS |
| AATTACCCGCATAGCATGAT+TGG | 0.373854 | 3_2:+76496102 | None:intergenic |
| GAGTTGCACTTCAACGATAT+TGG | 0.376186 | 3_2:-76496409 | Msa0426080:CDS |
| GACGTTCAAGAACAAACAAT+TGG | 0.391637 | 3_2:-76494559 | Msa0426080:CDS |
| TGGGAGCACGGCATTCTTAT+CGG | 0.397622 | 3_2:+76494430 | None:intergenic |
| CATTGTGTCAGCAAATCATC+TGG | 0.415046 | 3_2:+76494410 | None:intergenic |
| CGTAATACAATCTTCATTCT+CGG | 0.415852 | 3_2:+76495431 | None:intergenic |
| ATTGGTTGGCAAGGAATCAT+AGG | 0.425259 | 3_2:-76497083 | Msa0426080:CDS |
| GGTTAGTCACCGCAATCATC+GGG | 0.427328 | 3_2:-76495799 | Msa0426080:CDS |
| ACAGTTTGTTTCTCAGTGAC+TGG | 0.438180 | 3_2:-76496015 | Msa0426080:intron |
| ATCTCTTGTACGATTGAAAC+AGG | 0.442832 | 3_2:-76496260 | Msa0426080:intron |
| TTCCCTCCTGAGGTGGAGAA+AGG | 0.462650 | 3_2:-76494511 | Msa0426080:CDS |
| CCGCATAGCATGATTGGCAT+TGG | 0.463891 | 3_2:+76496108 | None:intergenic |
| TCAGAAAGGGAGTAGTCTTC+CGG | 0.466059 | 3_2:+76494481 | None:intergenic |
| AGGAAGAGATAAAGGAGTTG+TGG | 0.467760 | 3_2:-76495232 | Msa0426080:CDS |
| AAAGCATGGGAAGGATTTCA+AGG | 0.474928 | 3_2:-76497345 | Msa0426080:CDS |
| AGCAGTATTTGGCATGTTCA+AGG | 0.480053 | 3_2:-76495697 | Msa0426080:intron |
| AAGAATAAGGAGCAGGAAGA+TGG | 0.483958 | 3_2:-76494589 | Msa0426080:CDS |
| GGGTTAGTCACCGCAATCAT+CGG | 0.484438 | 3_2:-76495800 | Msa0426080:CDS |
| CAAGCTGACATAGATGGAAA+TGG | 0.487916 | 3_2:-76495206 | Msa0426080:CDS |
| AGTCACTCTCTCGACAAGTT+GGG | 0.491261 | 3_2:+76497115 | None:intergenic |
| CTGAGGTGGAGAAAGGTAGA+TGG | 0.494182 | 3_2:-76494504 | Msa0426080:CDS |
| GAAAATTACTAAAAGCAAGT+TGG | 0.494595 | 3_2:-76495725 | Msa0426080:CDS |
| CATCTACCTTTCTCCACCTC+AGG | 0.495969 | 3_2:+76494505 | None:intergenic |
| TACAAATTCCTGAGGTCCCA+GGG | 0.496535 | 3_2:-76495968 | Msa0426080:CDS |
| GGTTATGTTAGTTTCAAACT+TGG | 0.498826 | 3_2:-76496852 | Msa0426080:CDS |
| TTACAAATTCCTGAGGTCCC+AGG | 0.501386 | 3_2:-76495969 | Msa0426080:CDS |
| GAAAAGAGACTTGGAGATGC+TGG | 0.501756 | 3_2:-76496873 | Msa0426080:CDS |
| TTTCTGTGAAGCACTTCGAC+AGG | 0.502170 | 3_2:-76495400 | Msa0426080:intron |
| ATACAAAACCCTGGGACCTC+AGG | 0.504226 | 3_2:+76495960 | None:intergenic |
| TTGCATCGTGAGGAAATAGA+AGG | 0.517561 | 3_2:+76496287 | None:intergenic |
| ATATAGAGGGACATTATCAT+TGG | 0.521316 | 3_2:-76497407 | None:intergenic |
| CAATGCCAATCATGCTATGC+GGG | 0.524290 | 3_2:-76496107 | Msa0426080:intron |
| TAGAGGGACATTATCATTGG+TGG | 0.525853 | 3_2:-76497404 | None:intergenic |
| GGAAGAGATAAAGGAGTTGT+GGG | 0.527364 | 3_2:-76495231 | Msa0426080:CDS |
| AAGTCGAGCATGATCAGAAA+GGG | 0.528485 | 3_2:+76494468 | None:intergenic |
| TGATGCATTCGCATTTCTAA+GGG | 0.533037 | 3_2:-76495454 | Msa0426080:CDS |
| TAGTCACTCTCTCGACAAGT+TGG | 0.536188 | 3_2:+76497114 | None:intergenic |
| TTTGAACGTAGAATGAGAAC+GGG | 0.538447 | 3_2:-76497379 | Msa0426080:exon |
| CATTTCCATCTATGTCAGCT+TGG | 0.539383 | 3_2:+76495207 | None:intergenic |
| TAAGTCGAGCATGATCAGAA+AGG | 0.539993 | 3_2:+76494467 | None:intergenic |
| TGGGTCCAAGCTGACATAGA+TGG | 0.540867 | 3_2:-76495212 | Msa0426080:CDS |
| TGATTGGCATTGGCTTGAGT+TGG | 0.541280 | 3_2:+76496118 | None:intergenic |
| GGAATCATAGGATATTGGAT+TGG | 0.544273 | 3_2:-76497071 | Msa0426080:CDS |
| ATGGGAAGGATTTCAAGGAT+TGG | 0.546080 | 3_2:-76497340 | Msa0426080:CDS |
| CGACAACAAGAATAAGGAGC+AGG | 0.549044 | 3_2:-76494596 | Msa0426080:CDS |
| CACTGATGCAGATGCTGACA+AGG | 0.551387 | 3_2:-76495912 | Msa0426080:intron |
| AATTTGTATGAAAAGAGACT+TGG | 0.556763 | 3_2:-76496882 | Msa0426080:CDS |
| AGAGGGACATTATCATTGGT+GGG | 0.556920 | 3_2:-76497403 | None:intergenic |
| TTGTTTCTCAGTGACTGGAA+TGG | 0.560382 | 3_2:-76496010 | Msa0426080:CDS |
| GACTGGAATGGAAGCAAGCG+TGG | 0.563929 | 3_2:-76495998 | Msa0426080:CDS |
| AGAGTGACTATAGAGCATAT+TGG | 0.564609 | 3_2:-76497101 | Msa0426080:CDS |
| GCGAAACGGTGAAATTAGGC+AGG | 0.564680 | 3_2:-76496332 | Msa0426080:CDS |
| ATGTTAGTTTCAAACTTGGA+AGG | 0.564896 | 3_2:-76496848 | Msa0426080:CDS |
| AGGACGAACAACCGTGGAGA+TGG | 0.568957 | 3_2:-76496828 | Msa0426080:intron |
| GTAGAATGAGAACGGGTAAG+TGG | 0.570816 | 3_2:-76497372 | Msa0426080:exon |
| TGACTATAGAGCATATTGGT+TGG | 0.573810 | 3_2:-76497097 | Msa0426080:CDS |
| CTACCTTTCTCCACCTCAGG+AGG | 0.577262 | 3_2:+76494508 | None:intergenic |
| CAGCAAATCATCTGGGAGCA+CGG | 0.578468 | 3_2:+76494418 | None:intergenic |
| ATAGAGCATATTGGTTGGCA+AGG | 0.582004 | 3_2:-76497092 | Msa0426080:CDS |
| ATATATTTCCCCGATGATTG+CGG | 0.591841 | 3_2:+76495790 | None:intergenic |
| AGGAGCAAGAATGTTAAAAG+TGG | 0.592566 | 3_2:+76497255 | None:intergenic |
| CATCGTGAGGAAATAGAAGG+TGG | 0.593034 | 3_2:+76496290 | None:intergenic |
| CAAGTAATGCAAGGTTGTGG+TGG | 0.598052 | 3_2:+76497280 | None:intergenic |
| TTACAAACGCATCAATGATG+AGG | 0.600751 | 3_2:-76497230 | Msa0426080:intron |
| GGTGGAGAAAGGTAGATGGC+CGG | 0.616375 | 3_2:-76494500 | Msa0426080:CDS |
| TAGAATGAGAACGGGTAAGT+GGG | 0.630123 | 3_2:-76497371 | Msa0426080:exon |
| AAAGTGGTGCAAGTAATGCA+AGG | 0.633549 | 3_2:+76497271 | None:intergenic |
| CGTAAGACGATACAAAACCC+TGG | 0.634874 | 3_2:+76495951 | None:intergenic |
| GTAAGACGATACAAAACCCT+GGG | 0.637957 | 3_2:+76495952 | None:intergenic |
| TACCTTTCTCCACCTCAGGA+GGG | 0.639590 | 3_2:+76494509 | None:intergenic |
| GACATGTTTACAAATTCCTG+AGG | 0.641651 | 3_2:-76495976 | Msa0426080:CDS |
| ATTGTGTCAGCAAATCATCT+GGG | 0.646731 | 3_2:+76494411 | None:intergenic |
| AGAGATAGCGTTGCATCGTG+AGG | 0.646885 | 3_2:+76496277 | None:intergenic |
| TCATTCTCATGAGTTGAGTG+AGG | 0.655974 | 3_2:-76495252 | Msa0426080:CDS |
| ATCGTGAGGAAATAGAAGGT+GGG | 0.667884 | 3_2:+76496291 | None:intergenic |
| CTTGGAAGGACGAACAACCG+TGG | 0.669893 | 3_2:-76496834 | Msa0426080:CDS |
| GTGCAAGTAATGCAAGGTTG+TGG | 0.682671 | 3_2:+76497277 | None:intergenic |
| CCAATGCCAATCATGCTATG+CGG | 0.686315 | 3_2:-76496108 | Msa0426080:CDS |
| GAACGCGCATACCATCTCCA+CGG | 0.721216 | 3_2:+76496817 | None:intergenic |
| GTTAGTCACCGCAATCATCG+GGG | 0.740550 | 3_2:-76495798 | Msa0426080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTAAACATGTTATA+TGG | + | chr3_2:76495144-76495163 | None:intergenic | 10.0% |
| !! | TTTGTAATAATGTATTGAAT+TGG | - | chr3_2:76495105-76495124 | Msa0426080:intron | 15.0% |
| !! | TTGTAATAATGTATTGAATT+GGG | - | chr3_2:76495106-76495125 | Msa0426080:intron | 15.0% |
| !! | TGTTTAAAAAATATTTACTG+AGG | - | chr3_2:76495151-76495170 | Msa0426080:intron | 15.0% |
| !! | GTTTAAAAAATATTTACTGA+GGG | - | chr3_2:76495152-76495171 | Msa0426080:intron | 15.0% |
| !!! | CTTTAACATTTTCAATTATA+AGG | - | chr3_2:76495385-76495404 | Msa0426080:intron | 15.0% |
| !!! | AAAAATTTCTCTATTTTTTC+AGG | - | chr3_2:76496308-76496327 | Msa0426080:CDS | 15.0% |
| !!! | ATAGATTGTTTTTTTTTGAA+AGG | + | chr3_2:76496708-76496727 | None:intergenic | 15.0% |
| !! | AAACAAAAACAACAAAACAA+AGG | + | chr3_2:76494640-76494659 | None:intergenic | 20.0% |
| !! | TCAGTAAAAACAATTCTAAA+TGG | + | chr3_2:76495181-76495200 | None:intergenic | 20.0% |
| !!! | ATTTAGAATTGTTTTTACTG+AGG | - | chr3_2:76495180-76495199 | Msa0426080:intron | 20.0% |
| !! | GGTATCAAAATATTTAAATG+TGG | - | chr3_2:76495577-76495596 | Msa0426080:intron | 20.0% |
| !! | AATATTTAAATGTGGTATAC+AGG | - | chr3_2:76495585-76495604 | Msa0426080:intron | 20.0% |
| !! | ATAGAATAAGTATAGATGAT+TGG | + | chr3_2:76495980-76495999 | None:intergenic | 20.0% |
| !! | AAAAATCCATGTGTTTATAA+GGG | - | chr3_2:76496503-76496522 | Msa0426080:intron | 20.0% |
| !!! | TAATTTATAGAATTTGCTAC+TGG | - | chr3_2:76496958-76496977 | Msa0426080:intron | 20.0% |
| !! | CATATTAAATTGTTCTTGTT+AGG | + | chr3_2:76497008-76497027 | None:intergenic | 20.0% |
| ! | TCAATCATCACAAATATTTG+AGG | + | chr3_2:76494673-76494692 | None:intergenic | 25.0% |
| ! | TATTTGTGATGATTGAAAAC+AGG | - | chr3_2:76494677-76494696 | Msa0426080:intron | 25.0% |
| !!! | CTGCTTATTTGTTTTGATTA+AGG | - | chr3_2:76494812-76494831 | Msa0426080:intron | 25.0% |
| ! | GTGTTCTACATTTCTATTAT+TGG | - | chr3_2:76494846-76494865 | Msa0426080:intron | 25.0% |
| ! | AATTTGTATGAAAAGAGACT+TGG | - | chr3_2:76494934-76494953 | Msa0426080:intron | 25.0% |
| !! | ATTTTGCTAAAATATCCCTT+TGG | - | chr3_2:76495029-76495048 | Msa0426080:intron | 25.0% |
| !!! | GAAAAATGCTTTTAGAGTTT+AGG | - | chr3_2:76495202-76495221 | Msa0426080:CDS | 25.0% |
| !! | TAGTCTTTCCATTTTCAAAA+TGG | - | chr3_2:76495462-76495481 | Msa0426080:CDS | 25.0% |
| ! | TTAAAATTTCATCTTGTTGC+AGG | - | chr3_2:76495632-76495651 | Msa0426080:intron | 25.0% |
| !! | TTTAAGAAAAAGAAGTACAC+TGG | + | chr3_2:76495756-76495775 | None:intergenic | 25.0% |
| !!! | TATGTGCTGTTGATTTTATT+TGG | - | chr3_2:76496046-76496065 | Msa0426080:intron | 25.0% |
| !! | AGTAATTTTCGATATTTGTC+AGG | + | chr3_2:76496081-76496100 | None:intergenic | 25.0% |
| ! | GAAAATTACTAAAAGCAAGT+TGG | - | chr3_2:76496091-76496110 | Msa0426080:intron | 25.0% |
| !! | ATGACTTTTACATGTCTATA+AGG | - | chr3_2:76496189-76496208 | Msa0426080:intron | 25.0% |
| !! | TTTTACATGTCTATAAGGTT+AGG | - | chr3_2:76496194-76496213 | Msa0426080:intron | 25.0% |
| ! | AGATAAGAATGTGTGTTAAA+TGG | + | chr3_2:76496482-76496501 | None:intergenic | 25.0% |
| ! | GAAAAATCCATGTGTTTATA+AGG | - | chr3_2:76496502-76496521 | Msa0426080:intron | 25.0% |
| ! | AAAAAACCCTTATAAACACA+TGG | + | chr3_2:76496512-76496531 | None:intergenic | 25.0% |
| ! | TCTTGACTATAAAGAATTTC+TGG | - | chr3_2:76496636-76496655 | Msa0426080:intron | 25.0% |
| ! | CAATTTAATATGTCTATGCA+TGG | - | chr3_2:76497016-76497035 | Msa0426080:intron | 25.0% |
| ! | GTTTAAAAATTGTCATTCAG+TGG | - | chr3_2:76497038-76497057 | Msa0426080:CDS | 25.0% |
| !!! | TTTTTGTTTCTTTTGAGCAA+TGG | - | chr3_2:76497084-76497103 | Msa0426080:CDS | 25.0% |
| !!! | ATAGCTTGTTTGTTAAATCA+TGG | - | chr3_2:76497137-76497156 | Msa0426080:intron | 25.0% |
| ! | TTTTGAACGTAGAATGAGAA+CGG | - | chr3_2:76494436-76494455 | Msa0426080:CDS | 30.0% |
| TCATTGATGCGTTTGTAAAT+AGG | + | chr3_2:76494584-76494603 | None:intergenic | 30.0% | |
| GTCTTCTATTATTTGTCTTC+AGG | - | chr3_2:76494782-76494801 | Msa0426080:intron | 30.0% | |
| TACATTTCTATTATTGGCCA+AGG | - | chr3_2:76494852-76494871 | Msa0426080:intron | 30.0% | |
| ACATTTCTATTATTGGCCAA+GGG | - | chr3_2:76494853-76494872 | Msa0426080:intron | 30.0% | |
| CTAATGTGTTGAATTTGTGA+AGG | - | chr3_2:76494882-76494901 | Msa0426080:intron | 30.0% | |
| ! | TTGAATTTGTGAAGGAGTTT+TGG | - | chr3_2:76494890-76494909 | Msa0426080:intron | 30.0% |
| ! | TGAATTTGTGAAGGAGTTTT+GGG | - | chr3_2:76494891-76494910 | Msa0426080:intron | 30.0% |
| ! | GGTTATGTTAGTTTCAAACT+TGG | - | chr3_2:76494964-76494983 | Msa0426080:intron | 30.0% |
| ! | ATGTTAGTTTCAAACTTGGA+AGG | - | chr3_2:76494968-76494987 | Msa0426080:intron | 30.0% |
| !!! | GGGATATTTTAGCAAAATTG+AGG | + | chr3_2:76495027-76495046 | None:intergenic | 30.0% |
| ATGAATTTGTGACAACCAAA+GGG | + | chr3_2:76495047-76495066 | None:intergenic | 30.0% | |
| TATTACAAATCCATAACGTC+CGG | + | chr3_2:76495094-76495113 | None:intergenic | 30.0% | |
| TAATGTATTGAATTGGGCAA+AGG | - | chr3_2:76495112-76495131 | Msa0426080:intron | 30.0% | |
| AATGTATTGAATTGGGCAAA+GGG | - | chr3_2:76495113-76495132 | Msa0426080:intron | 30.0% | |
| TTATATGTCAAGGGTTACAT+TGG | + | chr3_2:76495231-76495250 | None:intergenic | 30.0% | |
| ! | TTCTGGTTGTTATATGTCAA+GGG | + | chr3_2:76495240-76495259 | None:intergenic | 30.0% |
| ! | ATTCTGGTTGTTATATGTCA+AGG | + | chr3_2:76495241-76495260 | None:intergenic | 30.0% |
| !! | GCTTTTGGAAAATGTAATTC+TGG | + | chr3_2:76495257-76495276 | None:intergenic | 30.0% |
| TTCTGATATAGTGTTATCCT+TGG | - | chr3_2:76495322-76495341 | Msa0426080:intron | 30.0% | |
| TCTGATATAGTGTTATCCTT+GGG | - | chr3_2:76495323-76495342 | Msa0426080:intron | 30.0% | |
| ! | TCTTTTAATAGCAGTGCAAA+CGG | - | chr3_2:76495358-76495377 | Msa0426080:intron | 30.0% |
| !!! | ACAGGCATTTTTTAATGACT+AGG | - | chr3_2:76495603-76495622 | Msa0426080:intron | 30.0% |
| TGTAAAAGTCATAACGAAGA+TGG | + | chr3_2:76496181-76496200 | None:intergenic | 30.0% | |
| CGTAATACAATCTTCATTCT+CGG | + | chr3_2:76496388-76496407 | None:intergenic | 30.0% | |
| GAAGATTGTATTACGTATTC+TGG | - | chr3_2:76496393-76496412 | Msa0426080:CDS | 30.0% | |
| TCTTTGCAGCTCAATTTAAT+TGG | - | chr3_2:76496541-76496560 | Msa0426080:intron | 30.0% | |
| ! | GCGTAGATATAATTTTTCTG+AGG | + | chr3_2:76496769-76496788 | None:intergenic | 30.0% |
| CAAAACATGTCACATGTAAT+TGG | - | chr3_2:76496858-76496877 | Msa0426080:CDS | 30.0% | |
| GCAGTTTATGTCTAGTTAAA+TGG | + | chr3_2:76496911-76496930 | None:intergenic | 30.0% | |
| TTAGGTCACTCATGATTAAA+TGG | + | chr3_2:76496990-76497009 | None:intergenic | 30.0% | |
| GGTGTAAAATTTGTATAGAG+TGG | - | chr3_2:76497059-76497078 | Msa0426080:CDS | 30.0% | |
| TTTGAACGTAGAATGAGAAC+GGG | - | chr3_2:76494437-76494456 | Msa0426080:CDS | 35.0% | |
| !! | TGGTGGATTAGTATCGTTTA+AGG | + | chr3_2:76494522-76494541 | None:intergenic | 35.0% |
| AGGAGCAAGAATGTTAAAAG+TGG | + | chr3_2:76494564-76494583 | None:intergenic | 35.0% | |
| TTACAAACGCATCAATGATG+AGG | - | chr3_2:76494586-76494605 | Msa0426080:CDS | 35.0% | |
| AGAGTGACTATAGAGCATAT+TGG | - | chr3_2:76494715-76494734 | Msa0426080:intron | 35.0% | |
| TGACTATAGAGCATATTGGT+TGG | - | chr3_2:76494719-76494738 | Msa0426080:intron | 35.0% | |
| GGAATCATAGGATATTGGAT+TGG | - | chr3_2:76494745-76494764 | Msa0426080:intron | 35.0% | |
| GATGAATTTGTGACAACCAA+AGG | + | chr3_2:76495048-76495067 | None:intergenic | 35.0% | |
| ! | TGTCATCATATTTTTCACGC+CGG | - | chr3_2:76495072-76495091 | Msa0426080:intron | 35.0% |
| ATGTATTGAATTGGGCAAAG+GGG | - | chr3_2:76495114-76495133 | Msa0426080:intron | 35.0% | |
| !! | CCTAAACAAAAGCATGCTTT+TGG | + | chr3_2:76495272-76495291 | None:intergenic | 35.0% |
| !! | CCAAAAGCATGCTTTTGTTT+AGG | - | chr3_2:76495269-76495288 | Msa0426080:CDS | 35.0% |
| TTATCCTTGGGTTACATAAC+AGG | - | chr3_2:76495335-76495354 | Msa0426080:intron | 35.0% | |
| ! | CCATTTTCAAAATGGCGAAA+CGG | - | chr3_2:76495470-76495489 | Msa0426080:CDS | 35.0% |
| ATCTCTTGTACGATTGAAAC+AGG | - | chr3_2:76495556-76495575 | Msa0426080:intron | 35.0% | |
| GACATGTTTACAAATTCCTG+AGG | - | chr3_2:76495840-76495859 | Msa0426080:intron | 35.0% | |
| TCTATATAATGTCGATGCAG+TGG | - | chr3_2:76495995-76496014 | Msa0426080:CDS | 35.0% | |
| CTATATAATGTCGATGCAGT+GGG | - | chr3_2:76495996-76496015 | Msa0426080:CDS | 35.0% | |
| ATATATTTCCCCGATGATTG+CGG | + | chr3_2:76496029-76496048 | None:intergenic | 35.0% | |
| AGTAGTATAGGAAACACATG+TGG | + | chr3_2:76496220-76496239 | None:intergenic | 35.0% | |
| !! | ATAGTGGACATCATTGTAGA+CGG | + | chr3_2:76496248-76496267 | None:intergenic | 35.0% |
| AACTAAAGATTGCACCATAG+TGG | + | chr3_2:76496264-76496283 | None:intergenic | 35.0% | |
| TGATGCATTCGCATTTCTAA+GGG | - | chr3_2:76496362-76496381 | Msa0426080:CDS | 35.0% | |
| ATTGAGTGCTTATCTCTACA+AGG | - | chr3_2:76496822-76496841 | Msa0426080:intron | 35.0% | |
| ! | ATCATGGTCTTGAAATTACG+TGG | - | chr3_2:76497153-76497172 | Msa0426080:intron | 35.0% |
| AAGAGACGACAACAAGAATA+AGG | - | chr3_2:76497214-76497233 | Msa0426080:intron | 35.0% | |
| GACGTTCAAGAACAAACAAT+TGG | - | chr3_2:76497257-76497276 | Msa0426080:CDS | 35.0% | |
| TAGAATGAGAACGGGTAAGT+GGG | - | chr3_2:76494445-76494464 | Msa0426080:CDS | 40.0% | |
| AAAGCATGGGAAGGATTTCA+AGG | - | chr3_2:76494471-76494490 | Msa0426080:CDS | 40.0% | |
| ATGGGAAGGATTTCAAGGAT+TGG | - | chr3_2:76494476-76494495 | Msa0426080:CDS | 40.0% | |
| AAAGTGGTGCAAGTAATGCA+AGG | + | chr3_2:76494548-76494567 | None:intergenic | 40.0% | |
| ! | ATAGAGCATATTGGTTGGCA+AGG | - | chr3_2:76494724-76494743 | Msa0426080:intron | 40.0% |
| ATTGGTTGGCAAGGAATCAT+AGG | - | chr3_2:76494733-76494752 | Msa0426080:intron | 40.0% | |
| GGCAAGGAATCATAGGATAT+TGG | - | chr3_2:76494740-76494759 | Msa0426080:intron | 40.0% | |
| !!! | TTTGTGAAGGAGTTTTGGGT+AGG | - | chr3_2:76494895-76494914 | Msa0426080:intron | 40.0% |
| TGTATTGAATTGGGCAAAGG+GGG | - | chr3_2:76495115-76495134 | Msa0426080:intron | 40.0% | |
| AAGACCTGTTATGTAACCCA+AGG | + | chr3_2:76495342-76495361 | None:intergenic | 40.0% | |
| GAGTTGCACTTCAACGATAT+TGG | - | chr3_2:76495407-76495426 | Msa0426080:CDS | 40.0% | |
| !! | CCGTTTCGCCATTTTGAAAA+TGG | + | chr3_2:76495473-76495492 | None:intergenic | 40.0% |
| AATGGCGAAACGGTGAAATT+AGG | - | chr3_2:76495480-76495499 | Msa0426080:CDS | 40.0% | |
| ATCGTGAGGAAATAGAAGGT+GGG | + | chr3_2:76495528-76495547 | None:intergenic | 40.0% | |
| TTGCATCGTGAGGAAATAGA+AGG | + | chr3_2:76495532-76495551 | None:intergenic | 40.0% | |
| AATTACCCGCATAGCATGAT+TGG | + | chr3_2:76495717-76495736 | None:intergenic | 40.0% | |
| ! | ACAGTTTGTTTCTCAGTGAC+TGG | - | chr3_2:76495801-76495820 | Msa0426080:CDS | 40.0% |
| ! | TTGTTTCTCAGTGACTGGAA+TGG | - | chr3_2:76495806-76495825 | Msa0426080:intron | 40.0% |
| GTAAGACGATACAAAACCCT+GGG | + | chr3_2:76495867-76495886 | None:intergenic | 40.0% | |
| AGTTGGAGTGAAGCAGTATT+TGG | - | chr3_2:76496108-76496127 | Msa0426080:CDS | 40.0% | |
| AGCAGTATTTGGCATGTTCA+AGG | - | chr3_2:76496119-76496138 | Msa0426080:CDS | 40.0% | |
| TAGACGGTTCACAGTAGTAT+AGG | + | chr3_2:76496232-76496251 | None:intergenic | 40.0% | |
| GTCTACAATGATGTCCACTA+TGG | - | chr3_2:76496247-76496266 | Msa0426080:intron | 40.0% | |
| ! | TGGTGCAATCTTTAGTTTCG+TGG | - | chr3_2:76496267-76496286 | Msa0426080:CDS | 40.0% |
| GTGATGCATTCGCATTTCTA+AGG | - | chr3_2:76496361-76496380 | Msa0426080:CDS | 40.0% | |
| ! | TCATTCTCATGAGTTGAGTG+AGG | - | chr3_2:76496564-76496583 | Msa0426080:intron | 40.0% |
| GTTGAGTGAGGAAGAGATAA+AGG | - | chr3_2:76496576-76496595 | Msa0426080:intron | 40.0% | |
| AGGAAGAGATAAAGGAGTTG+TGG | - | chr3_2:76496584-76496603 | Msa0426080:intron | 40.0% | |
| GGAAGAGATAAAGGAGTTGT+GGG | - | chr3_2:76496585-76496604 | Msa0426080:intron | 40.0% | |
| CATTTCCATCTATGTCAGCT+TGG | + | chr3_2:76496612-76496631 | None:intergenic | 40.0% | |
| CAAGCTGACATAGATGGAAA+TGG | - | chr3_2:76496610-76496629 | Msa0426080:intron | 40.0% | |
| TCTACGCAATCAATGACTAG+AGG | - | chr3_2:76496782-76496801 | Msa0426080:intron | 40.0% | |
| AAGAATAAGGAGCAGGAAGA+TGG | - | chr3_2:76497227-76497246 | Msa0426080:intron | 40.0% | |
| AAGTCGAGCATGATCAGAAA+GGG | + | chr3_2:76497351-76497370 | None:intergenic | 40.0% | |
| TAAGTCGAGCATGATCAGAA+AGG | + | chr3_2:76497352-76497371 | None:intergenic | 40.0% | |
| GTAGAATGAGAACGGGTAAG+TGG | - | chr3_2:76494444-76494463 | Msa0426080:CDS | 45.0% | |
| ! | GGTAAGTGGGCAAAAAGCAT+GGG | - | chr3_2:76494458-76494477 | Msa0426080:CDS | 45.0% |
| CAAGTAATGCAAGGTTGTGG+TGG | + | chr3_2:76494539-76494558 | None:intergenic | 45.0% | |
| GTGCAAGTAATGCAAGGTTG+TGG | + | chr3_2:76494542-76494561 | None:intergenic | 45.0% | |
| AGTCACTCTCTCGACAAGTT+GGG | + | chr3_2:76494704-76494723 | None:intergenic | 45.0% | |
| TAGTCACTCTCTCGACAAGT+TGG | + | chr3_2:76494705-76494724 | None:intergenic | 45.0% | |
| CTATTATTGGCCAAGGGTGA+AGG | - | chr3_2:76494859-76494878 | Msa0426080:intron | 45.0% | |
| !! | AACACATTAGCCTTCACCCT+TGG | + | chr3_2:76494872-76494891 | None:intergenic | 45.0% |
| GAAAAGAGACTTGGAGATGC+TGG | - | chr3_2:76494943-76494962 | Msa0426080:intron | 45.0% | |
| ! | ATTTTTCACGCCGGACGTTA+TGG | - | chr3_2:76495081-76495100 | Msa0426080:intron | 45.0% |
| CATCGTGAGGAAATAGAAGG+TGG | + | chr3_2:76495529-76495548 | None:intergenic | 45.0% | |
| !! | TGATTGGCATTGGCTTGAGT+TGG | + | chr3_2:76495701-76495720 | None:intergenic | 45.0% |
| CCAATGCCAATCATGCTATG+CGG | - | chr3_2:76495708-76495727 | Msa0426080:CDS | 45.0% | |
| CAATGCCAATCATGCTATGC+GGG | - | chr3_2:76495709-76495728 | Msa0426080:CDS | 45.0% | |
| GCGGGTAATTCAACTCGATA+TGG | - | chr3_2:76495727-76495746 | Msa0426080:CDS | 45.0% | |
| TTACAAATTCCTGAGGTCCC+AGG | - | chr3_2:76495847-76495866 | Msa0426080:intron | 45.0% | |
| TACAAATTCCTGAGGTCCCA+GGG | - | chr3_2:76495848-76495867 | Msa0426080:intron | 45.0% | |
| CGTAAGACGATACAAAACCC+TGG | + | chr3_2:76495868-76495887 | None:intergenic | 45.0% | |
| ! | TTTCTGTGAAGCACTTCGAC+AGG | - | chr3_2:76496416-76496435 | Msa0426080:CDS | 45.0% |
| CGACAACAAGAATAAGGAGC+AGG | - | chr3_2:76497220-76497239 | Msa0426080:intron | 45.0% | |
| TCAGAAAGGGAGTAGTCTTC+CGG | + | chr3_2:76497338-76497357 | None:intergenic | 45.0% | |
| GGGTAAGTGGGCAAAAAGCA+TGG | - | chr3_2:76494457-76494476 | Msa0426080:CDS | 50.0% | |
| ! | AGTGGGCAAAAAGCATGGGA+AGG | - | chr3_2:76494462-76494481 | Msa0426080:CDS | 50.0% |
| GCGAAACGGTGAAATTAGGC+AGG | - | chr3_2:76495484-76495503 | Msa0426080:CDS | 50.0% | |
| AGAGATAGCGTTGCATCGTG+AGG | + | chr3_2:76495542-76495561 | None:intergenic | 50.0% | |
| CCGCATAGCATGATTGGCAT+TGG | + | chr3_2:76495711-76495730 | None:intergenic | 50.0% | |
| ATACAAAACCCTGGGACCTC+AGG | + | chr3_2:76495859-76495878 | None:intergenic | 50.0% | |
| CACTGATGCAGATGCTGACA+AGG | - | chr3_2:76495904-76495923 | Msa0426080:intron | 50.0% | |
| !! | GGGTTAGTCACCGCAATCAT+CGG | - | chr3_2:76496016-76496035 | Msa0426080:intron | 50.0% |
| ! | GGTTAGTCACCGCAATCATC+GGG | - | chr3_2:76496017-76496036 | Msa0426080:intron | 50.0% |
| GTTAGTCACCGCAATCATCG+GGG | - | chr3_2:76496018-76496037 | Msa0426080:intron | 50.0% | |
| TGGGTCCAAGCTGACATAGA+TGG | - | chr3_2:76496604-76496623 | Msa0426080:intron | 50.0% | |
| AGCAGACAAGCTTGTCTTGC+AGG | + | chr3_2:76497110-76497129 | None:intergenic | 50.0% | |
| CGTGGTTGCAGCAGCAAATA+TGG | - | chr3_2:76497171-76497190 | Msa0426080:intron | 50.0% | |
| !!! | TGCAGTTTTGTTCCCTCCTG+AGG | - | chr3_2:76497295-76497314 | Msa0426080:CDS | 50.0% |
| !!! | AGTTTTGTTCCCTCCTGAGG+TGG | - | chr3_2:76497298-76497317 | Msa0426080:CDS | 50.0% |
| TACCTTTCTCCACCTCAGGA+GGG | + | chr3_2:76497310-76497329 | None:intergenic | 50.0% | |
| CATCTACCTTTCTCCACCTC+AGG | + | chr3_2:76497314-76497333 | None:intergenic | 50.0% | |
| CTGAGGTGGAGAAAGGTAGA+TGG | - | chr3_2:76497312-76497331 | Msa0426080:CDS | 50.0% | |
| ! | TGGGAGCACGGCATTCTTAT+CGG | + | chr3_2:76497389-76497408 | None:intergenic | 50.0% |
| CAGCAAATCATCTGGGAGCA+CGG | + | chr3_2:76497401-76497420 | None:intergenic | 50.0% | |
| CTTGGAAGGACGAACAACCG+TGG | - | chr3_2:76494982-76495001 | Msa0426080:intron | 55.0% | |
| AGGACGAACAACCGTGGAGA+TGG | - | chr3_2:76494988-76495007 | Msa0426080:intron | 55.0% | |
| GAACGCGCATACCATCTCCA+CGG | + | chr3_2:76495002-76495021 | None:intergenic | 55.0% | |
| GACTGGAATGGAAGCAAGCG+TGG | - | chr3_2:76495818-76495837 | Msa0426080:intron | 55.0% | |
| TTCCCTCCTGAGGTGGAGAA+AGG | - | chr3_2:76497305-76497324 | Msa0426080:CDS | 55.0% | |
| CTACCTTTCTCCACCTCAGG+AGG | + | chr3_2:76497311-76497330 | None:intergenic | 55.0% | |
| GGTGGAGAAAGGTAGATGGC+CGG | - | chr3_2:76497316-76497335 | Msa0426080:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 76494417 | 76497421 | 76494417 | ID=Msa0426080;Name=Msa0426080 |
| chr3_2 | mRNA | 76494417 | 76497421 | 76494417 | ID=Msa0426080-mRNA-1;Parent=Msa0426080;Name=Msa0426080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=32|0.77|0.5|1|1|1|10|0|456 |
| chr3_2 | exon | 76494417 | 76494656 | 76494417 | ID=Msa0426080-mRNA-1:exon:19787;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76495181 | 76495288 | 76495181 | ID=Msa0426080-mRNA-1:exon:19786;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76495401 | 76495508 | 76495401 | ID=Msa0426080-mRNA-1:exon:19785;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76495698 | 76495823 | 76495698 | ID=Msa0426080-mRNA-1:exon:19784;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76495913 | 76496033 | 76495913 | ID=Msa0426080-mRNA-1:exon:19783;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76496108 | 76496184 | 76496108 | ID=Msa0426080-mRNA-1:exon:19782;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76496261 | 76496481 | 76496261 | ID=Msa0426080-mRNA-1:exon:19781;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76496829 | 76496934 | 76496829 | ID=Msa0426080-mRNA-1:exon:19780;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76497035 | 76497139 | 76497035 | ID=Msa0426080-mRNA-1:exon:19779;Parent=Msa0426080-mRNA-1 |
| chr3_2 | exon | 76497231 | 76497421 | 76497231 | ID=Msa0426080-mRNA-1:exon:19778;Parent=Msa0426080-mRNA-1 |
| chr3_2 | five_prime_UTR | 76497390 | 76497421 | 76497390 | ID=Msa0426080-mRNA-1:five_prime_utr;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76497231 | 76497389 | 76497231 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76497035 | 76497139 | 76497035 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76496829 | 76496934 | 76496829 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76496261 | 76496481 | 76496261 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76496108 | 76496184 | 76496108 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76495913 | 76496033 | 76495913 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76495698 | 76495823 | 76495698 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76495401 | 76495508 | 76495401 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76495181 | 76495288 | 76495181 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| chr3_2 | CDS | 76494417 | 76494656 | 76494417 | ID=Msa0426080-mRNA-1:cds;Parent=Msa0426080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
