AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130360 MtrunA17_Chr1g0198451 97.052 441 13 0 1 441 1 441 0.0 868
Msa0130360 MtrunA17_Chr1g0198441 86.425 442 59 1 1 441 1 442 0.0 780
Msa0130360 MtrunA17_Chr1g0211401 36.534 427 261 3 10 428 4 428 1.54e-92 286
Msa0130360 MtrunA17_Chr3g0143461 35.967 367 224 1 64 419 3 369 1.03e-76 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130360 AT5G42210.1 36.557 424 259 2 13 426 10 433 5.13e-91 283
Msa0130360 AT5G42210.2 36.031 383 235 2 13 385 10 392 1.62e-80 254
Msa0130360 AT2G16980.2 34.312 443 265 4 8 425 4 445 9.75e-78 249
Msa0130360 AT2G16980.3 34.312 443 265 4 8 425 19 460 1.40e-77 249
Msa0130360 AT2G16980.4 35.104 433 252 4 8 415 19 447 7.67e-76 244
Msa0130360 AT2G16970.2 32.594 451 278 4 8 432 4 454 5.42e-75 242
Msa0130360 AT2G16990.7 31.655 417 263 2 13 407 8 424 1.57e-68 224
Msa0130360 AT2G16980.1 33.416 404 244 3 8 386 19 422 1.38e-66 219
Msa0130360 AT2G16970.3 31.667 420 262 3 8 402 4 423 5.79e-66 218
Msa0130360 AT2G16990.1 31.463 410 259 2 13 400 8 417 1.07e-65 218
Msa0130360 AT2G16990.2 31.463 410 259 2 13 400 8 417 1.07e-65 218
Msa0130360 AT2G16970.4 32.178 404 249 3 8 386 4 407 4.00e-65 215
Msa0130360 AT2G16970.7 32.178 404 249 3 8 386 4 407 4.00e-65 215
Msa0130360 AT2G16980.5 31.250 432 244 4 8 386 19 450 2.59e-61 206
Msa0130360 AT2G16990.4 30.479 397 254 2 13 387 8 404 1.84e-60 202
Msa0130360 AT2G16990.6 30.479 397 254 2 13 387 8 404 1.84e-60 202
Msa0130360 AT2G16970.6 31.300 377 234 3 8 359 4 380 6.71e-56 190
Msa0130360 AT2G16990.8 30.488 410 236 3 13 400 8 390 1.15e-55 191
Msa0130360 AT2G16970.8 32.184 348 211 3 8 330 4 351 3.67e-54 185
Msa0130360 AT2G16970.1 32.184 348 211 3 8 330 4 351 3.96e-54 185
Msa0130360 AT2G16980.6 34.906 318 179 3 122 415 1 314 6.63e-47 165
Msa0130360 AT2G16990.3 28.994 338 218 2 13 328 8 345 4.87e-46 164
Msa0130360 AT2G16990.5 28.994 338 218 2 13 328 8 345 4.87e-46 164
Msa0130360 AT2G16970.5 37.430 179 111 1 255 432 169 347 2.98e-31 123
Msa0130360 AT2G16970.5 34.706 170 110 1 8 176 4 173 3.20e-27 112

Find 84 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTGCAGGCTTGGCTTTC+TGG 0.046732 1_3:-60534859 Msa0130360:intron
TCCAAAGCCATTTACATTAA+TGG 0.151907 1_3:-60536841 Msa0130360:CDS
TTGAAGACCATTAATGTAAA+TGG 0.184689 1_3:+60536834 None:intergenic
TCATTACTTGAAGGATTATT+AGG 0.221635 1_3:+60533666 None:intergenic
AACAAAAGGGCAGCAGTATT+TGG 0.253401 1_3:-60536039 Msa0130360:CDS
GATGATGGTACTTCCACTTT+TGG 0.276695 1_3:-60536702 Msa0130360:CDS
CCAAATGAGGCACTTAAATA+TGG 0.298481 1_3:+60534556 None:intergenic
GAAATTACCAAAAGGAAATA+TGG 0.304389 1_3:+60536622 None:intergenic
ACCATTAATGTAAATGGCTT+TGG 0.317187 1_3:+60536840 None:intergenic
TCCACCACCATATTTCCTTT+TGG 0.332298 1_3:-60536629 Msa0130360:intron
AGGAAGAATTGCATATAAAC+TGG 0.362320 1_3:+60535800 None:intergenic
TGGATTAGCATGGGCACCTT+GGG 0.369833 1_3:-60534839 Msa0130360:intron
TACTTCCACTAAGCATTCAT+TGG 0.375771 1_3:-60536939 Msa0130360:CDS
ATATATCTACATCGCTTGAT+TGG 0.383633 1_3:+60533575 None:intergenic
TCCTCCAAGTCATTACTTGA+AGG 0.388935 1_3:+60533657 None:intergenic
CCGCGGAAATAGTAATCTTC+AGG 0.389670 1_3:-60535676 Msa0130360:intron
TTTCTGCTTCACATGTTGTT+GGG 0.389841 1_3:-60535999 Msa0130360:CDS
CTTCTGATGATGGTCGGAAT+TGG 0.392333 1_3:-60535292 Msa0130360:CDS
GCAGTATTTGGTTGGATCAC+TGG 0.394856 1_3:-60536027 Msa0130360:CDS
CCATATTTAAGTGCCTCATT+TGG 0.394933 1_3:-60534556 Msa0130360:CDS
TCCTCATAGATTTATATCTT+CGG 0.396596 1_3:+60535702 None:intergenic
TTGGTGTAGCTTTACTTGCC+TGG 0.419101 1_3:-60536269 Msa0130360:intron
CTGGATTAGCATGGGCACCT+TGG 0.419174 1_3:-60534840 Msa0130360:CDS
GGAAGTAACAAGTGGAATAA+TGG 0.425167 1_3:+60536955 None:intergenic
GCTAAAACCTTTGCATTCAA+AGG 0.425492 1_3:+60533847 None:intergenic
GTCAAAGGACTCATTACAAT+TGG 0.436941 1_3:+60533994 None:intergenic
GCCTAACTCTTGGATATTTG+TGG 0.444573 1_3:+60535754 None:intergenic
AGCATCAAGCTCAACCAATC+AGG 0.446005 1_3:-60534191 Msa0130360:intron
CCAATACTTAATCCATTGGT+TGG 0.448307 1_3:-60535000 Msa0130360:CDS
GCAATCCAATGAATGCTTAG+TGG 0.451192 1_3:+60536934 None:intergenic
AAATTCCTCAGATTGATTCC+AGG 0.451558 1_3:+60536251 None:intergenic
CCAACCAATGGATTAAGTAT+TGG 0.453351 1_3:+60535000 None:intergenic
ACTTCCAATACTTAATCCAT+TGG 0.457054 1_3:-60535004 Msa0130360:CDS
CTTGGCTTTCTGGATTAGCA+TGG 0.462444 1_3:-60534849 Msa0130360:CDS
ATGTTGTCAATGAAAACAAA+AGG 0.465641 1_3:-60536053 Msa0130360:CDS
CCTAACTCTTGGATATTTGT+GGG 0.469016 1_3:+60535755 None:intergenic
ATATGCTATTGATGCAAGTA+AGG 0.470324 1_3:+60534954 None:intergenic
CTAAAACCTTTGCATTCAAA+GGG 0.470696 1_3:+60533848 None:intergenic
CCCACAAATATCCAAGAGTT+AGG 0.475946 1_3:-60535755 Msa0130360:CDS
GGATCAATTGTACACATACT+AGG 0.481571 1_3:-60533598 Msa0130360:three_prime_UTR
ACATGTTGTTGGGAACGTCT+TGG 0.481757 1_3:-60535989 Msa0130360:CDS
TAGAGCAGAAGCCTAACTCT+TGG 0.495111 1_3:+60535744 None:intergenic
GACCATGTTCATCTGAAAGC+TGG 0.496936 1_3:+60536678 None:intergenic
GTTCTCAGAACTTCTGATGA+TGG 0.496970 1_3:-60535302 Msa0130360:CDS
TTGGCTTTCTGGATTAGCAT+GGG 0.498516 1_3:-60534848 Msa0130360:CDS
GCTTCTGAATCATAGCTGAT+TGG 0.502290 1_3:-60533619 Msa0130360:exon
AATTGTGCGAAGCACATAGT+AGG 0.502554 1_3:+60536221 None:intergenic
CTGCATCTCTGTCGCGTATG+TGG 0.504768 1_3:-60536169 Msa0130360:intron
ATCAGCTATGATTCAGAAGC+GGG 0.504887 1_3:+60533622 None:intergenic
TCCTTCAAGTAATGACTTGG+AGG 0.506539 1_3:-60533658 Msa0130360:CDS
CAGTCCTACATTAAGAGGCA+TGG 0.507024 1_3:-60535537 Msa0130360:CDS
AGGAAATATGGTGGTGGACA+TGG 0.507063 1_3:+60536634 None:intergenic
AAAAGGACAACAAACCTGAT+TGG 0.509443 1_3:+60534177 None:intergenic
AAAGGGCAGCAGTATTTGGT+TGG 0.512553 1_3:-60536035 Msa0130360:CDS
TCTGAAAGCTGGCCCAAAAG+TGG 0.517271 1_3:+60536689 None:intergenic
GTATTCTACTTACAAGTCAA+AGG 0.529313 1_3:+60533979 None:intergenic
ATCACTTTCTCTCCAACCAA+TGG 0.535617 1_3:+60534988 None:intergenic
GACATAGATAATGCCAAATG+AGG 0.541816 1_3:+60534543 None:intergenic
TAATCCTTCAAGTAATGACT+TGG 0.551573 1_3:-60533661 Msa0130360:CDS
ATTTCGTATATAATCAGTAA+AGG 0.551876 1_3:-60536201 Msa0130360:CDS
GACATGGTAACAAGGAGTAA+AGG 0.560542 1_3:+60536650 None:intergenic
TGTTGTCAATGAAAACAAAA+GGG 0.564808 1_3:-60536052 Msa0130360:CDS
AGAAACATGTCGTGGTGGAG+TGG 0.565655 1_3:-60536994 None:intergenic
AGAGCCATGCCTCTTAATGT+AGG 0.570142 1_3:+60535533 None:intergenic
TTGAAAACATACCAGCAAAA+CGG 0.572492 1_3:+60535469 None:intergenic
GCCGAAGATATAAATCTATG+AGG 0.575578 1_3:-60535703 Msa0130360:CDS
TTGGAGCAAGATGATTGTTG+AGG 0.583697 1_3:+60536859 None:intergenic
TCAGAACTTCTGATGATGGT+CGG 0.592201 1_3:-60535298 Msa0130360:CDS
GATGCTCCCTTTGAATGCAA+AGG 0.600708 1_3:-60533854 Msa0130360:CDS
ACCAAAAGGAAATATGGTGG+TGG 0.601761 1_3:+60536628 None:intergenic
TGCTTAGTGGAAGTAACAAG+TGG 0.613388 1_3:+60536947 None:intergenic
TGGTGGTGGACATGGTAACA+AGG 0.613830 1_3:+60536642 None:intergenic
TACTCACAGCTGGTTTCACA+AGG 0.613962 1_3:+60534521 None:intergenic
GGCCAGCTTTCAGATGAACA+TGG 0.618022 1_3:-60536680 Msa0130360:CDS
ACTTGCCTGGAATCAATCTG+AGG 0.623532 1_3:-60536256 Msa0130360:CDS
TATATGTGCATCTGTATGCA+TGG 0.633250 1_3:-60533822 Msa0130360:intron
CCTGAAGATTACTATTTCCG+CGG 0.635434 1_3:+60535676 None:intergenic
ATTACCAAAAGGAAATATGG+TGG 0.656790 1_3:+60536625 None:intergenic
AATCAGCTATGATTCAGAAG+CGG 0.657752 1_3:+60533621 None:intergenic
ATCTCAGAAACATGTCGTGG+TGG 0.664928 1_3:-60536999 None:intergenic
ATCATCTCAGAAACATGTCG+TGG 0.665653 1_3:-60537002 None:intergenic
TAAATCTATGAGGAATGCCG+CGG 0.674285 1_3:-60535693 Msa0130360:CDS
AAAACATACCAGCAAAACGG+TGG 0.718416 1_3:+60535472 None:intergenic
TTGTTGAGGACATAAAGCAG+TGG 0.744421 1_3:+60536873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTTAATCTAATATAT+TGG - chr1_3:60533975-60533994 Msa0130360:intron 10.0%
!! TAAAATAAAAATGAGAAAGT+TGG + chr1_3:60533800-60533819 None:intergenic 15.0%
!!! AAATTTTGAAAAGAAAAAGA+TGG - chr1_3:60534449-60534468 Msa0130360:intron 15.0%
!!! TTATTTTTATACTTCTTGTT+AGG - chr1_3:60534689-60534708 Msa0130360:intron 15.0%
!!! TGAAAAACATTACATTTTTT+AGG + chr1_3:60535017-60535036 None:intergenic 15.0%
!! AGAATATAATACAAAAAAAG+TGG + chr1_3:60536170-60536189 None:intergenic 15.0%
!!! ATTTAATTTGTATACACTAT+CGG + chr1_3:60536260-60536279 None:intergenic 15.0%
!! ATAAAGAAAATCATATGAAA+TGG + chr1_3:60536475-60536494 None:intergenic 15.0%
!!! TTTTCTTTATCTGAATTTTA+TGG - chr1_3:60536485-60536504 Msa0130360:intron 15.0%
!! GAAAAATTGAAATTACCAAA+AGG + chr1_3:60533961-60533980 None:intergenic 20.0%
!! ATTTCGTATATAATCAGTAA+AGG - chr1_3:60534371-60534390 Msa0130360:intron 20.0%
!! TAGGTTATGAATCTTAATTA+TGG - chr1_3:60534708-60534727 Msa0130360:intron 20.0%
!! ATTGACGAATTCAATTAAAT+CGG + chr1_3:60535129-60535148 None:intergenic 20.0%
!! AATAGTTACAATCATTAGTT+TGG + chr1_3:60535362-60535381 None:intergenic 20.0%
!!! TTTTGTGATTCTTCTTTATA+AGG - chr1_3:60535407-60535426 Msa0130360:intron 20.0%
!! TACAAATTTACATGCTTATA+TGG - chr1_3:60535924-60535943 Msa0130360:intron 20.0%
!! AAGAAATTAATTGCAATATC+AGG + chr1_3:60536332-60536351 None:intergenic 20.0%
!!! TTATGGTGTAATTTTATTGT+AGG - chr1_3:60536502-60536521 Msa0130360:intron 20.0%
!!! TATGGTGTAATTTTATTGTA+GGG - chr1_3:60536503-60536522 Msa0130360:intron 20.0%
!! GTGTCAAAATTAATGTAAAA+TGG + chr1_3:60536644-60536663 None:intergenic 20.0%
!! AGTTATTATATTGTAGCATA+AGG + chr1_3:60536666-60536685 None:intergenic 20.0%
! TTGAAGACCATTAATGTAAA+TGG + chr1_3:60533741-60533760 None:intergenic 25.0%
! GAAATTACCAAAAGGAAATA+TGG + chr1_3:60533953-60533972 None:intergenic 25.0%
! TATCAATCAATCATAACTGT+TGG + chr1_3:60534081-60534100 None:intergenic 25.0%
!!! GATTGATAGTGTAAAAACTA+CGG - chr1_3:60534093-60534112 Msa0130360:intron 25.0%
! CAATGTTAAGGAGAATTTAA+TGG + chr1_3:60534135-60534154 None:intergenic 25.0%
! ATGTTGTCAATGAAAACAAA+AGG - chr1_3:60534519-60534538 Msa0130360:intron 25.0%
! TGTTGTCAATGAAAACAAAA+GGG - chr1_3:60534520-60534539 Msa0130360:intron 25.0%
! TCCTCATAGATTTATATCTT+CGG + chr1_3:60534873-60534892 None:intergenic 25.0%
! TAAATAGTAGTAACACAACA+AGG + chr1_3:60535158-60535177 None:intergenic 25.0%
!!! TACTATTTGAAAGCTGTTTT+TGG - chr1_3:60535232-60535251 Msa0130360:intron 25.0%
! TATAACTGTTGAGTTTAATC+TGG - chr1_3:60535459-60535478 Msa0130360:intron 25.0%
! AATGTTTGATAAGCTGATTA+TGG - chr1_3:60535490-60535509 Msa0130360:CDS 25.0%
! AAGAGCTTAGATATGATATT+AGG + chr1_3:60535680-60535699 None:intergenic 25.0%
!!! GCTCTTTTGATGATATATTT+TGG - chr1_3:60535694-60535713 Msa0130360:CDS 25.0%
! AAAAAGCTTACTTTGAATAC+AGG + chr1_3:60535836-60535855 None:intergenic 25.0%
! CTTGAATAAGAAGTTATAAC+AGG - chr1_3:60535863-60535882 Msa0130360:intron 25.0%
! ATTTGTATAAGCACATTGTA+AGG + chr1_3:60535911-60535930 None:intergenic 25.0%
! TTCTATATAGTCACAATCAA+TGG - chr1_3:60536298-60536317 Msa0130360:intron 25.0%
! CATATGAAATGGTGTTTATT+TGG + chr1_3:60536464-60536483 None:intergenic 25.0%
!!! ACTTTTTCAGATGATTTCTT+TGG - chr1_3:60536863-60536882 Msa0130360:CDS 25.0%
! TCATTACTTGAAGGATTATT+AGG + chr1_3:60536909-60536928 None:intergenic 25.0%
TCCAAAGCCATTTACATTAA+TGG - chr1_3:60533731-60533750 Msa0130360:intron 30.0%
ACCATTAATGTAAATGGCTT+TGG + chr1_3:60533735-60533754 None:intergenic 30.0%
ATTACCAAAAGGAAATATGG+TGG + chr1_3:60533950-60533969 None:intergenic 30.0%
TGAAGTGATCAACAATGTTA+AGG + chr1_3:60534147-60534166 None:intergenic 30.0%
CAACAAGAATACAGTGAAAA+AGG + chr1_3:60534282-60534301 None:intergenic 30.0%
TTCACTGTATTCTTGTTGAT+TGG - chr1_3:60534284-60534303 Msa0130360:intron 30.0%
! TCCTCAAAACTACATTTTTG+TGG - chr1_3:60534616-60534635 Msa0130360:intron 30.0%
!! ACCACAAAAATGTAGTTTTG+AGG + chr1_3:60534620-60534639 None:intergenic 30.0%
TATTGAAACCTGAAACAAGT+AGG + chr1_3:60534734-60534753 None:intergenic 30.0%
AGGAAGAATTGCATATAAAC+TGG + chr1_3:60534775-60534794 None:intergenic 30.0%
!!! CTAGTTTTACAGTTTCAACT+AGG + chr1_3:60534795-60534814 None:intergenic 30.0%
!! TTTTTCAGTCCTACATTAAG+AGG - chr1_3:60535030-60535049 Msa0130360:intron 30.0%
TTGAAAACATACCAGCAAAA+CGG + chr1_3:60535106-60535125 None:intergenic 30.0%
!! AATTGGTTCAATCTTTTCTC+AGG - chr1_3:60535297-60535316 Msa0130360:CDS 30.0%
! GTTACAATCATTAGTTTGGA+GGG + chr1_3:60535358-60535377 None:intergenic 30.0%
! AGTTACAATCATTAGTTTGG+AGG + chr1_3:60535359-60535378 None:intergenic 30.0%
ACTTCCAATACTTAATCCAT+TGG - chr1_3:60535568-60535587 Msa0130360:intron 30.0%
ATATGCTATTGATGCAAGTA+AGG + chr1_3:60535621-60535640 None:intergenic 30.0%
!!! TTGATGATATATTTTGGTGC+AGG - chr1_3:60535700-60535719 Msa0130360:CDS 30.0%
! TTATCAATTTTACTCACCCA+AGG + chr1_3:60535752-60535771 None:intergenic 30.0%
! GTGTAAAAGAGTGTAAAAGA+GGG + chr1_3:60536119-60536138 None:intergenic 30.0%
! TGTGTAAAAGAGTGTAAAAG+AGG + chr1_3:60536120-60536139 None:intergenic 30.0%
CATCTCACAATGTAGATATT+TGG + chr1_3:60536206-60536225 None:intergenic 30.0%
TGATTGTGACTATATAGAAG+TGG + chr1_3:60536297-60536316 None:intergenic 30.0%
! AAAGCACAAACTTTTATTGC+TGG - chr1_3:60536527-60536546 Msa0130360:intron 30.0%
! AAGCACAAACTTTTATTGCT+GGG - chr1_3:60536528-60536547 Msa0130360:intron 30.0%
GTATTCTACTTACAAGTCAA+AGG + chr1_3:60536596-60536615 None:intergenic 30.0%
CTAAAACCTTTGCATTCAAA+GGG + chr1_3:60536727-60536746 None:intergenic 30.0%
AGAAGAGATAAACAACTAGA+GGG + chr1_3:60536825-60536844 None:intergenic 30.0%
TAGAAGAGATAAACAACTAG+AGG + chr1_3:60536826-60536845 None:intergenic 30.0%
TAATCCTTCAAGTAATGACT+TGG - chr1_3:60536911-60536930 Msa0130360:CDS 30.0%
GGAAGTAACAAGTGGAATAA+TGG + chr1_3:60533620-60533639 None:intergenic 35.0%
TACTTCCACTAAGCATTCAT+TGG - chr1_3:60533633-60533652 Msa0130360:CDS 35.0%
!!! CTTTTTTCCTTGTAGATTGC+TGG - chr1_3:60533838-60533857 Msa0130360:CDS 35.0%
GAAAATTCCAGCAATCTACA+AGG + chr1_3:60533848-60533867 None:intergenic 35.0%
!! TGCTGGAATTTTCAAGATGA+TGG - chr1_3:60533855-60533874 Msa0130360:CDS 35.0%
!! ATGATGGTACTTCCACTTTT+GGG - chr1_3:60533871-60533890 Msa0130360:CDS 35.0%
AATCATAACTGTTGGATCGT+TGG + chr1_3:60534073-60534092 None:intergenic 35.0%
TTGCAGATGTTGCAAGTAAA+GGG + chr1_3:60534185-60534204 None:intergenic 35.0%
! AAATTCCTCAGATTGATTCC+AGG + chr1_3:60534324-60534343 None:intergenic 35.0%
TGATATATCTTTCCTCTGTC+AGG - chr1_3:60534493-60534512 Msa0130360:intron 35.0%
! TTTTCTGCTTCACATGTTGT+TGG - chr1_3:60534572-60534591 Msa0130360:intron 35.0%
TTTCTGCTTCACATGTTGTT+GGG - chr1_3:60534573-60534592 Msa0130360:intron 35.0%
AATTATGGCCTACTTGTTTC+AGG - chr1_3:60534723-60534742 Msa0130360:intron 35.0%
CCTAACTCTTGGATATTTGT+GGG + chr1_3:60534820-60534839 None:intergenic 35.0%
GCCGAAGATATAAATCTATG+AGG - chr1_3:60534869-60534888 Msa0130360:intron 35.0%
! TGTCTCTTTCTTTTACGAGT+TGG - chr1_3:60535062-60535081 Msa0130360:intron 35.0%
! GTCTCTTTCTTTTACGAGTT+GGG - chr1_3:60535063-60535082 Msa0130360:intron 35.0%
TTCTCAGGTATAATGCTTCT+CGG - chr1_3:60535312-60535331 Msa0130360:CDS 35.0%
GTATTGGAAGTAACACAATC+TGG + chr1_3:60535559-60535578 None:intergenic 35.0%
!! CCAACCAATGGATTAAGTAT+TGG + chr1_3:60535575-60535594 None:intergenic 35.0%
CCAATACTTAATCCATTGGT+TGG - chr1_3:60535572-60535591 Msa0130360:intron 35.0%
! CCAAATGAGGCACTTAAATA+TGG + chr1_3:60536019-60536038 None:intergenic 35.0%
CCATATTTAAGTGCCTCATT+TGG - chr1_3:60536016-60536035 Msa0130360:CDS 35.0%
GACATAGATAATGCCAAATG+AGG + chr1_3:60536032-60536051 None:intergenic 35.0%
ATACAAAAAAAGTGGCATCG+TGG + chr1_3:60536162-60536181 None:intergenic 35.0%
TAATTGCAATATCAGGAGAC+AGG + chr1_3:60536325-60536344 None:intergenic 35.0%
AAAAGGACAACAAACCTGAT+TGG + chr1_3:60536398-60536417 None:intergenic 35.0%
TCACTGCTTGTAGGTAAAAA+AGG + chr1_3:60536415-60536434 None:intergenic 35.0%
! AGCACAAACTTTTATTGCTG+GGG - chr1_3:60536529-60536548 Msa0130360:intron 35.0%
GTCAAAGGACTCATTACAAT+TGG + chr1_3:60536581-60536600 None:intergenic 35.0%
GCTAAAACCTTTGCATTCAA+AGG + chr1_3:60536728-60536747 None:intergenic 35.0%
TATATGTGCATCTGTATGCA+TGG - chr1_3:60536750-60536769 Msa0130360:intron 35.0%
TAGAGGGTAGAATAGATGAA+AGG + chr1_3:60536809-60536828 None:intergenic 35.0%
AATCAGCTATGATTCAGAAG+CGG + chr1_3:60536954-60536973 None:intergenic 35.0%
GGATCAATTGTACACATACT+AGG - chr1_3:60536974-60536993 Msa0130360:CDS 35.0%
TGCTTAGTGGAAGTAACAAG+TGG + chr1_3:60533628-60533647 None:intergenic 40.0%
GCAATCCAATGAATGCTTAG+TGG + chr1_3:60533641-60533660 None:intergenic 40.0%
TTGTTGAGGACATAAAGCAG+TGG + chr1_3:60533702-60533721 None:intergenic 40.0%
TTGGAGCAAGATGATTGTTG+AGG + chr1_3:60533716-60533735 None:intergenic 40.0%
!! GATGATGGTACTTCCACTTT+TGG - chr1_3:60533870-60533889 Msa0130360:CDS 40.0%
GACATGGTAACAAGGAGTAA+AGG + chr1_3:60533925-60533944 None:intergenic 40.0%
! TCCACCACCATATTTCCTTT+TGG - chr1_3:60533943-60533962 Msa0130360:intron 40.0%
ACCAAAAGGAAATATGGTGG+TGG + chr1_3:60533947-60533966 None:intergenic 40.0%
GTTGCAGATGTTGCAAGTAA+AGG + chr1_3:60534186-60534205 None:intergenic 40.0%
AATTGTGCGAAGCACATAGT+AGG + chr1_3:60534354-60534373 None:intergenic 40.0%
AACAAAAGGGCAGCAGTATT+TGG - chr1_3:60534533-60534552 Msa0130360:CDS 40.0%
CCCACAAATATCCAAGAGTT+AGG - chr1_3:60534817-60534836 Msa0130360:intron 40.0%
GCCTAACTCTTGGATATTTG+TGG + chr1_3:60534821-60534840 None:intergenic 40.0%
TAAATCTATGAGGAATGCCG+CGG - chr1_3:60534879-60534898 Msa0130360:intron 40.0%
CCTGAAGATTACTATTTCCG+CGG + chr1_3:60534899-60534918 None:intergenic 40.0%
!! TTTTACGAGTTGGGAATGTC+TGG - chr1_3:60535072-60535091 Msa0130360:intron 40.0%
AAAACATACCAGCAAAACGG+TGG + chr1_3:60535103-60535122 None:intergenic 40.0%
GTTCTCAGAACTTCTGATGA+TGG - chr1_3:60535270-60535289 Msa0130360:intron 40.0%
!! TCAGAACTTCTGATGATGGT+CGG - chr1_3:60535274-60535293 Msa0130360:intron 40.0%
! CATTAGTTTGGAGGGATCAA+AGG + chr1_3:60535350-60535369 None:intergenic 40.0%
ACAATCTGGAAGAAGTTGAC+AGG + chr1_3:60535545-60535564 None:intergenic 40.0%
ATCACTTTCTCTCCAACCAA+TGG + chr1_3:60535587-60535606 None:intergenic 40.0%
!!! GATATATTTTGGTGCAGGCT+TGG - chr1_3:60535705-60535724 Msa0130360:CDS 40.0%
!! TTGGCTTTCTGGATTAGCAT+GGG - chr1_3:60535724-60535743 Msa0130360:CDS 40.0%
TGAGTTTCATTCACGAATGC+AGG - chr1_3:60535991-60536010 Msa0130360:CDS 40.0%
ATCACATATCTACTCACAGC+TGG + chr1_3:60536064-60536083 None:intergenic 40.0%
TGGTAAGAGATAATGCTCTG+TGG + chr1_3:60536444-60536463 None:intergenic 40.0%
! TCCTTCAAGTAATGACTTGG+AGG - chr1_3:60536914-60536933 Msa0130360:CDS 40.0%
TCCTCCAAGTCATTACTTGA+AGG + chr1_3:60536918-60536937 None:intergenic 40.0%
ATCAGCTATGATTCAGAAGC+GGG + chr1_3:60536953-60536972 None:intergenic 40.0%
GCTTCTGAATCATAGCTGAT+TGG - chr1_3:60536953-60536972 Msa0130360:CDS 40.0%
GACCATGTTCATCTGAAAGC+TGG + chr1_3:60533897-60533916 None:intergenic 45.0%
!! AGGAAATATGGTGGTGGACA+TGG + chr1_3:60533941-60533960 None:intergenic 45.0%
CATCTGCAACAACTGTAGAG+TGG - chr1_3:60534196-60534215 Msa0130360:CDS 45.0%
! TTGGTGTAGCTTTACTTGCC+TGG - chr1_3:60534303-60534322 Msa0130360:intron 45.0%
ACTTGCCTGGAATCAATCTG+AGG - chr1_3:60534316-60534335 Msa0130360:intron 45.0%
AAAGGGCAGCAGTATTTGGT+TGG - chr1_3:60534537-60534556 Msa0130360:CDS 45.0%
GCAGTATTTGGTTGGATCAC+TGG - chr1_3:60534545-60534564 Msa0130360:CDS 45.0%
ACATGTTGTTGGGAACGTCT+TGG - chr1_3:60534583-60534602 Msa0130360:intron 45.0%
TAGAGCAGAAGCCTAACTCT+TGG + chr1_3:60534831-60534850 None:intergenic 45.0%
CCGCGGAAATAGTAATCTTC+AGG - chr1_3:60534896-60534915 Msa0130360:intron 45.0%
CAGTCCTACATTAAGAGGCA+TGG - chr1_3:60535035-60535054 Msa0130360:intron 45.0%
AGAGCCATGCCTCTTAATGT+AGG + chr1_3:60535042-60535061 None:intergenic 45.0%
! TGGTATAACCACCGTTTTGC+TGG - chr1_3:60535092-60535111 Msa0130360:intron 45.0%
!! CTTCTGATGATGGTCGGAAT+TGG - chr1_3:60535280-60535299 Msa0130360:CDS 45.0%
TCAGGTATAATGCTTCTCGG+AGG - chr1_3:60535315-60535334 Msa0130360:CDS 45.0%
!! CTTGGCTTTCTGGATTAGCA+TGG - chr1_3:60535723-60535742 Msa0130360:CDS 45.0%
! TACTCACAGCTGGTTTCACA+AGG + chr1_3:60536054-60536073 None:intergenic 45.0%
AGCATCAAGCTCAACCAATC+AGG - chr1_3:60536381-60536400 Msa0130360:intron 45.0%
GATGCTCCCTTTGAATGCAA+AGG - chr1_3:60536718-60536737 Msa0130360:CDS 45.0%
TCTGAAAGCTGGCCCAAAAG+TGG + chr1_3:60533886-60533905 None:intergenic 50.0%
GGCCAGCTTTCAGATGAACA+TGG - chr1_3:60533892-60533911 Msa0130360:intron 50.0%
!! TGGTGGTGGACATGGTAACA+AGG + chr1_3:60533933-60533952 None:intergenic 50.0%
TGACAACATCTGCCTGACAG+AGG + chr1_3:60534508-60534527 None:intergenic 50.0%
!! TGGATTAGCATGGGCACCTT+GGG - chr1_3:60535733-60535752 Msa0130360:CDS 50.0%
!! TGGCTAGCTTCACTGCTTGT+AGG + chr1_3:60536424-60536443 None:intergenic 50.0%
CTGCATCTCTGTCGCGTATG+TGG - chr1_3:60534403-60534422 Msa0130360:intron 55.0%
! TTGGTGCAGGCTTGGCTTTC+TGG - chr1_3:60535713-60535732 Msa0130360:CDS 55.0%
!! CTGGATTAGCATGGGCACCT+TGG - chr1_3:60535732-60535751 Msa0130360:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60533584 60537010 60533584 ID=Msa0130360;Name=Msa0130360
chr1_3 mRNA 60533584 60537010 60533584 ID=Msa0130360-mRNA-1;Parent=Msa0130360;Name=Msa0130360-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.76|0.57|1|1|1|14|39|441
chr1_3 exon 60533584 60533721 60533584 ID=Msa0130360-mRNA-1:exon:19988;Parent=Msa0130360-mRNA-1
chr1_3 exon 60533823 60533893 60533823 ID=Msa0130360-mRNA-1:exon:19987;Parent=Msa0130360-mRNA-1
chr1_3 exon 60533992 60534070 60533992 ID=Msa0130360-mRNA-1:exon:19986;Parent=Msa0130360-mRNA-1
chr1_3 exon 60534192 60534233 60534192 ID=Msa0130360-mRNA-1:exon:19985;Parent=Msa0130360-mRNA-1
chr1_3 exon 60534528 60534581 60534528 ID=Msa0130360-mRNA-1:exon:19984;Parent=Msa0130360-mRNA-1
chr1_3 exon 60534840 60534872 60534840 ID=Msa0130360-mRNA-1:exon:19983;Parent=Msa0130360-mRNA-1
chr1_3 exon 60534954 60535034 60534954 ID=Msa0130360-mRNA-1:exon:19982;Parent=Msa0130360-mRNA-1
chr1_3 exon 60535276 60535362 60535276 ID=Msa0130360-mRNA-1:exon:19981;Parent=Msa0130360-mRNA-1
chr1_3 exon 60535481 60535556 60535481 ID=Msa0130360-mRNA-1:exon:19980;Parent=Msa0130360-mRNA-1
chr1_3 exon 60535677 60535849 60535677 ID=Msa0130360-mRNA-1:exon:19979;Parent=Msa0130360-mRNA-1
chr1_3 exon 60535957 60536079 60535957 ID=Msa0130360-mRNA-1:exon:19978;Parent=Msa0130360-mRNA-1
chr1_3 exon 60536170 60536282 60536170 ID=Msa0130360-mRNA-1:exon:19977;Parent=Msa0130360-mRNA-1
chr1_3 exon 60536630 60536741 60536630 ID=Msa0130360-mRNA-1:exon:19976;Parent=Msa0130360-mRNA-1
chr1_3 exon 60536828 60537010 60536828 ID=Msa0130360-mRNA-1:exon:19975;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60536828 60537010 60536828 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60536630 60536741 60536630 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60536170 60536282 60536170 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60535957 60536079 60535957 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60535677 60535849 60535677 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60535481 60535556 60535481 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60535276 60535362 60535276 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60534954 60535034 60534954 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60534840 60534872 60534840 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60534528 60534581 60534528 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60534192 60534233 60534192 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60533992 60534070 60533992 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60533823 60533893 60533823 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 CDS 60533623 60533721 60533623 ID=Msa0130360-mRNA-1:cds;Parent=Msa0130360-mRNA-1
chr1_3 three_prime_UTR 60533584 60533622 60533584 ID=Msa0130360-mRNA-1:three_prime_utr;Parent=Msa0130360-mRNA-1
Gene Sequence

>Msa0130360

ATGTCGTGGTGGAGTGGATTCTTTGAGCTGAGACCATTATTCCACTTGTTACTTCCACTAAGCATTCATTGGATTGCTGAAGAAATGACAGTTTCTGTTCTTGTTGATGTTACAACCACTGCTTTATGTCCTCAACAATCATCTTGCTCCAAAGCCATTTACATTAATGGTCTTCAAGAAACAATTGCTGGAATTTTCAAGATGATGGTACTTCCACTTTTGGGCCAGCTTTCAGATGAACATGGTCGCAAGCCTTTACTCCTTGTTACCATGTCCACCACCATATTTCCTTTTGCTTTACTTGCCTGGAATCAATCTGAGGAATTTGTATATGCCTACTATGTGCTTCGCACAATTTCGTATATAATCAGTAAAGGAAGTATTTTCTGCATCTCTGTCGCGTATGTGGCAGATGTTGTCAATGAAAACAAAAGGGCAGCAGTATTTGGTTGGATCACTGGTCTCTTTTCTGCTTCACATGTTGTTGGGAACGTCTTGGCTCGATTTCTTCCTCAAAACTACATTTTTGTGGTTTCAATAGCACTATTGATATTTTGTCCAGTTTATATGCAATTCTTCCTAGTTGAAACTGTAAAACTAGCTCCCACAAATATCCAAGAGTTAGGCTTCTGCTCTAAAGTTAGTTATGTTGTTAGCCGAAGATATAAATCTATGAGGAATGCCGCGGAAATAGTAATCTTCAGTCCTACATTAAGAGGCATGGCTCTTGTCTCTTTCTTTTACGAGTTGGGAATGTCTGGTATAACCACCGTTTTGCTGTACTATTTGAAAGCTGTTTTTGGTTTTAACAAAAATCAGTTCTCAGAACTTCTGATGATGGTCGGAATTGGTTCAATCTTTTCTCAGATTGTGTTACTTCCAATACTTAATCCATTGGTTGGAGAGAAAGTGATTCTATGCTCAGCCTTACTTGCATCAATAGCATATGCTTGGCTTTCTGGATTAGCATGGGCACCTTGGGTACCATATTTAAGTGCCTCATTTGGCATTATCTATGTCCTTGTGAAACCAGCTACATATGCTATTATTTCAAGAGCATCAAGCTCAACCAATCAGGGAAAAGCACAAACTTTTATTGCTGGGGCACAATCTATATCTGATTTACTATCACCAATTGTAATGAGTCCTTTGACTTCATTGTTTTTATCTAGCGATGCTCCCTTTGAATGCAAAGGTTTTAGCATTATATGTGCATCTGTATGCATGATGATTTCTTTGGTTTTTGCTTGCATGCTAACTCCTAATAATCCTTCAAGTAATGACTTGGAGGACAACACAGAAGACCCGCTTCTGAATCATAGCTGA

Protein sequence

>Msa0130360

MSWWSGFFELRPLFHLLLPLSIHWIAEEMTVSVLVDVTTTALCPQQSSCSKAIYINGLQETIAGIFKMMVLPLLGQLSDEHGRKPLLLVTMSTTIFPFALLAWNQSEEFVYAYYVLRTISYIISKGSIFCISVAYVADVVNENKRAAVFGWITGLFSASHVVGNVLARFLPQNYIFVVSIALLIFCPVYMQFFLVETVKLAPTNIQELGFCSKVSYVVSRRYKSMRNAAEIVIFSPTLRGMALVSFFYELGMSGITTVLLYYLKAVFGFNKNQFSELLMMVGIGSIFSQIVLLPILNPLVGEKVILCSALLASIAYAWLSGLAWAPWVPYLSASFGIIYVLVKPATYAIISRASSSTNQGKAQTFIAGAQSISDLLSPIVMSPLTSLFLSSDAPFECKGFSIICASVCMMISLVFACMLTPNNPSSNDLEDNTEDPLLNHS*