Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958830 | XP_024642075.2 | 99.552 | 446 | 2 | 0 | 1 | 446 | 1 | 446 | 0.0 | 913 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958830 | sp|Q42971|ENO_ORYSJ | 90.583 | 446 | 42 | 0 | 1 | 446 | 1 | 446 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa0958830 | -0.809053 | 2.287654e-50 | -8.615850e-47 |
| Msa0021400 | Msa0958830 | 0.855504 | 6.035429e-62 | -8.615850e-47 |
| Msa0026250 | Msa0958830 | 0.820553 | 6.456251e-53 | -8.615850e-47 |
| Msa0029700 | Msa0958830 | 0.824772 | 6.736021e-54 | -8.615850e-47 |
| Msa0035740 | Msa0958830 | 0.852402 | 4.728068e-61 | -8.615850e-47 |
| Msa0038150 | Msa0958830 | -0.801658 | 8.115998e-49 | -8.615850e-47 |
| Msa0039750 | Msa0958830 | 0.823374 | 1.433997e-53 | -8.615850e-47 |
| Msa0042950 | Msa0958830 | -0.804679 | 1.923692e-49 | -8.615850e-47 |
| Msa0056230 | Msa0958830 | -0.811440 | 6.993339e-51 | -8.615850e-47 |
| Msa0064960 | Msa0958830 | 0.819187 | 1.324816e-52 | -8.615850e-47 |
| Msa0072440 | Msa0958830 | 0.807095 | 5.975322e-50 | -8.615850e-47 |
| Msa0080020 | Msa0958830 | 0.826609 | 2.469584e-54 | -8.615850e-47 |
| Msa0089540 | Msa0958830 | 0.802461 | 5.547921e-49 | -8.615850e-47 |
| Msa0101530 | Msa0958830 | 0.823717 | 1.191547e-53 | -8.615850e-47 |
| Msa0110240 | Msa0958830 | 0.856076 | 4.106627e-62 | -8.615850e-47 |
| Msa0603310 | Msa0958830 | 0.824611 | 7.350736e-54 | -8.615850e-47 |
| Msa0606600 | Msa0958830 | 0.820844 | 5.533192e-53 | -8.615850e-47 |
| Msa0610240 | Msa0958830 | -0.811745 | 6.003807e-51 | -8.615850e-47 |
| Msa0610690 | Msa0958830 | 0.811425 | 7.046395e-51 | -8.615850e-47 |
| Msa0644330 | Msa0958830 | 0.810131 | 1.342266e-50 | -8.615850e-47 |
| Msa0644340 | Msa0958830 | 0.824818 | 6.567727e-54 | -8.615850e-47 |
| Msa0647300 | Msa0958830 | 0.829012 | 6.530220e-55 | -8.615850e-47 |
| Msa0684150 | Msa0958830 | 0.800260 | 1.566931e-48 | -8.615850e-47 |
| Msa0685390 | Msa0958830 | -0.806538 | 7.834505e-50 | -8.615850e-47 |
| Msa0685610 | Msa0958830 | 0.837036 | 6.586325e-57 | -8.615850e-47 |
| Msa0686830 | Msa0958830 | 0.833133 | 6.353008e-56 | -8.615850e-47 |
| Msa0693670 | Msa0958830 | 0.819084 | 1.398486e-52 | -8.615850e-47 |
| Msa0701800 | Msa0958830 | -0.812623 | 3.862930e-51 | -8.615850e-47 |
| Msa0703430 | Msa0958830 | -0.811973 | 5.355392e-51 | -8.615850e-47 |
| Msa0707860 | Msa0958830 | -0.827096 | 1.888734e-54 | -8.615850e-47 |
| Msa0742370 | Msa0958830 | -0.817276 | 3.585513e-52 | -8.615850e-47 |
| Msa0800120 | Msa0958830 | 0.811088 | 8.337797e-51 | -8.615850e-47 |
| Msa0800150 | Msa0958830 | 0.811205 | 7.865097e-51 | -8.615850e-47 |
| Msa0823480 | Msa0958830 | -0.801936 | 7.115402e-49 | -8.615850e-47 |
| Msa0838210 | Msa0958830 | 0.802036 | 6.786669e-49 | -8.615850e-47 |
| Msa0840540 | Msa0958830 | 0.801369 | 9.302049e-49 | -8.615850e-47 |
| Msa0120860 | Msa0958830 | 0.829836 | 4.119352e-55 | -8.615850e-47 |
| Msa0124960 | Msa0958830 | 0.821001 | 5.092523e-53 | -8.615850e-47 |
| Msa0127350 | Msa0958830 | -0.802768 | 4.797383e-49 | -8.615850e-47 |
| Msa0152190 | Msa0958830 | -0.800615 | 1.326254e-48 | -8.615850e-47 |
| Msa0154730 | Msa0958830 | 0.816470 | 5.438277e-52 | -8.615850e-47 |
| Msa0156530 | Msa0958830 | 0.840024 | 1.115139e-57 | -8.615850e-47 |
| Msa0173600 | Msa0958830 | -0.804904 | 1.727075e-49 | -8.615850e-47 |
| Msa0176220 | Msa0958830 | 0.848268 | 6.829845e-60 | -8.615850e-47 |
| Msa0186200 | Msa0958830 | 0.806727 | 7.149247e-50 | -8.615850e-47 |
| Msa0189250 | Msa0958830 | -0.810866 | 9.315446e-51 | -8.615850e-47 |
| Msa0219280 | Msa0958830 | 0.833274 | 5.858641e-56 | -8.615850e-47 |
| Msa0224870 | Msa0958830 | 0.804800 | 1.815246e-49 | -8.615850e-47 |
| Msa0227790 | Msa0958830 | 0.837576 | 4.791130e-57 | -8.615850e-47 |
| Msa0383930 | Msa0958830 | 0.844346 | 8.002824e-59 | -8.615850e-47 |
| Msa0384590 | Msa0958830 | 0.880013 | 7.785105e-70 | -8.615850e-47 |
| Msa0422070 | Msa0958830 | 0.811992 | 5.304870e-51 | -8.615850e-47 |
| Msa0426080 | Msa0958830 | 0.820165 | 7.920138e-53 | -8.615850e-47 |
| Msa0426240 | Msa0958830 | 0.854955 | 8.719045e-62 | -8.615850e-47 |
| Msa0434370 | Msa0958830 | 0.832015 | 1.203111e-55 | -8.615850e-47 |
| Msa0434660 | Msa0958830 | 0.867217 | 1.610628e-65 | -8.615850e-47 |
| Msa0463820 | Msa0958830 | -0.801911 | 7.200696e-49 | -8.615850e-47 |
| Msa0478130 | Msa0958830 | 0.828272 | 9.860825e-55 | -8.615850e-47 |
| Msa0478180 | Msa0958830 | 0.800003 | 1.767102e-48 | -8.615850e-47 |
| Msa0478190 | Msa0958830 | 0.841525 | 4.507909e-58 | -8.615850e-47 |
| Msa0478430 | Msa0958830 | 0.806744 | 7.089239e-50 | -8.615850e-47 |
| Msa0480900 | Msa0958830 | -0.813546 | 2.423397e-51 | -8.615850e-47 |
| Msa0242720 | Msa0958830 | 0.812431 | 4.254547e-51 | -8.615850e-47 |
| Msa0256810 | Msa0958830 | 0.820983 | 5.141719e-53 | -8.615850e-47 |
| Msa0258910 | Msa0958830 | 0.840801 | 6.987326e-58 | -8.615850e-47 |
| Msa0261460 | Msa0958830 | 0.814959 | 1.181175e-51 | -8.615850e-47 |
| Msa0261480 | Msa0958830 | 0.820603 | 6.284658e-53 | -8.615850e-47 |
| Msa0269220 | Msa0958830 | -0.812936 | 3.298042e-51 | -8.615850e-47 |
| Msa0286630 | Msa0958830 | 0.815833 | 7.549461e-52 | -8.615850e-47 |
| Msa0298400 | Msa0958830 | 0.841680 | 4.102241e-58 | -8.615850e-47 |
| Msa0303900 | Msa0958830 | 0.802510 | 5.420774e-49 | -8.615850e-47 |
| Msa0320170 | Msa0958830 | 0.802304 | 5.978520e-49 | -8.615850e-47 |
| Msa0336120 | Msa0958830 | 0.830696 | 2.539959e-55 | -8.615850e-47 |
| Msa0355080 | Msa0958830 | -0.802203 | 6.271186e-49 | -8.615850e-47 |
| Msa0358470 | Msa0958830 | 0.803441 | 3.480421e-49 | -8.615850e-47 |
| Msa0514540 | Msa0958830 | 0.824016 | 1.014237e-53 | -8.615850e-47 |
| Msa0516970 | Msa0958830 | 0.830670 | 2.577559e-55 | -8.615850e-47 |
| Msa0522290 | Msa0958830 | 0.802769 | 4.794512e-49 | -8.615850e-47 |
| Msa0522540 | Msa0958830 | 0.876414 | 1.422817e-68 | -8.615850e-47 |
| Msa0541880 | Msa0958830 | 0.832749 | 7.916504e-56 | -8.615850e-47 |
| Msa0541940 | Msa0958830 | 0.835512 | 1.606812e-56 | -8.615850e-47 |
| Msa0548420 | Msa0958830 | 0.834970 | 2.201897e-56 | -8.615850e-47 |
| Msa0576480 | Msa0958830 | -0.802255 | 6.118868e-49 | -8.615850e-47 |
| Msa0578830 | Msa0958830 | 0.825190 | 5.366766e-54 | -8.615850e-47 |
| Msa0578930 | Msa0958830 | 0.822509 | 2.280196e-53 | -8.615850e-47 |
| Msa0579080 | Msa0958830 | 0.819454 | 1.151620e-52 | -8.615850e-47 |
| Msa0579160 | Msa0958830 | 0.811906 | 5.537738e-51 | -8.615850e-47 |
| Msa0579220 | Msa0958830 | 0.815465 | 9.115704e-52 | -8.615850e-47 |
| Msa0590620 | Msa0958830 | -0.812438 | 4.240244e-51 | -8.615850e-47 |
| Msa0862480 | Msa0958830 | -0.812729 | 3.662425e-51 | -8.615850e-47 |
| Msa0921860 | Msa0958830 | 0.863743 | 2.001962e-64 | -8.615850e-47 |
| Msa0928180 | Msa0958830 | 0.827471 | 1.536245e-54 | -8.615850e-47 |
| Msa0958830 | Msa0964020 | 0.839881 | 1.215067e-57 | -8.615850e-47 |
| Msa0958830 | Msa0970040 | 0.852176 | 5.480814e-61 | -8.615850e-47 |
| Msa0958830 | Msa0970100 | 0.850220 | 1.954623e-60 | -8.615850e-47 |
| Msa0958830 | Msa0993190 | 0.820564 | 6.416155e-53 | -8.615850e-47 |
| Msa0958830 | Msa0994360 | 0.837098 | 6.351428e-57 | -8.615850e-47 |
| Msa0958830 | Msa1002970 | -0.800372 | 1.486482e-48 | -8.615850e-47 |
| Msa0958830 | Msa1011140 | -0.806307 | 8.767495e-50 | -8.615850e-47 |
| Msa0958830 | Msa1026970 | 0.850425 | 1.711884e-60 | -8.615850e-47 |
| Msa0958830 | Msa1039440 | -0.805907 | 1.063910e-49 | -8.615850e-47 |
| Msa0958830 | Msa1083380 | 0.803211 | 3.884775e-49 | -8.615850e-47 |
| Msa0958830 | Msa1088400 | -0.817190 | 3.750581e-52 | -8.615850e-47 |
| Msa0958830 | Msa1094810 | 0.840366 | 9.080582e-58 | -8.615850e-47 |
| Msa0958830 | Msa1111900 | 0.844686 | 6.482542e-59 | -8.615850e-47 |
| Msa0958830 | Msa1111910 | 0.820421 | 6.919570e-53 | -8.615850e-47 |
| Msa0958830 | Msa1133750 | 0.850483 | 1.648947e-60 | -8.615850e-47 |
| Msa0958830 | Msa1133760 | 0.839287 | 1.734420e-57 | -8.615850e-47 |
| Msa0958830 | Msa1146980 | 0.843179 | 1.643328e-58 | -8.615850e-47 |
| Msa0958830 | Msa1154310 | 0.841012 | 6.148975e-58 | -8.615850e-47 |
| Msa0958830 | Msa1154320 | 0.833720 | 4.534937e-56 | -8.615850e-47 |
| Msa0958830 | Msa1184680 | 0.850605 | 1.523994e-60 | -8.615850e-47 |
| Msa0958830 | Msa1191530 | -0.813553 | 2.414674e-51 | -8.615850e-47 |
| Msa0958830 | Msa1193940 | 0.801824 | 7.502978e-49 | -8.615850e-47 |
| Msa0958830 | Msa1197720 | 0.881665 | 1.986711e-70 | -8.615850e-47 |
| Msa0958830 | Msa1200360 | 0.800655 | 1.301390e-48 | -8.615850e-47 |
| Msa0958830 | Msa1203650 | 0.827542 | 1.477181e-54 | -8.615850e-47 |
| Msa0958830 | Msa1204870 | -0.820585 | 6.345993e-53 | -8.615850e-47 |
| Msa0958830 | Msa1204900 | -0.823348 | 1.453564e-53 | -8.615850e-47 |
| Msa0958830 | Msa1219530 | -0.808935 | 2.425118e-50 | -8.615850e-47 |
| Msa0958830 | Msa1221270 | 0.815529 | 8.821398e-52 | -8.615850e-47 |
| Msa0958830 | Msa1251410 | 0.863700 | 2.064230e-64 | -8.615850e-47 |
| Msa0958830 | Msa1256490 | -0.821639 | 3.627639e-53 | -8.615850e-47 |
| Msa0958830 | Msa1268360 | 0.808806 | 2.584576e-50 | -8.615850e-47 |
| Msa0958830 | Msa1296810 | -0.802503 | 5.439564e-49 | -8.615850e-47 |
| Msa0958830 | Msa1331570 | -0.833724 | 4.525089e-56 | -8.615850e-47 |
| Msa0958830 | Msa1333220 | -0.808802 | 2.589939e-50 | -8.615850e-47 |
| Msa0958830 | Msa1352600 | -0.807548 | 4.789101e-50 | -8.615850e-47 |
| Msa0958830 | Msa1356450 | 0.807395 | 5.162408e-50 | -8.615850e-47 |
| Msa0958830 | Msa1361580 | -0.823452 | 1.374978e-53 | -8.615850e-47 |
| Msa0958830 | Msa1362910 | 0.807223 | 5.614788e-50 | -8.615850e-47 |
| Msa0958830 | Msa1366140 | -0.815860 | 7.446723e-52 | -8.615850e-47 |
| Msa0958830 | Msa1372000 | 0.806187 | 9.290196e-50 | -8.615850e-47 |
| Msa0958830 | Msa1387450 | -0.813371 | 2.647951e-51 | -8.615850e-47 |
| Msa0958830 | Msa1396110 | 0.850973 | 1.200502e-60 | -8.615850e-47 |
| Msa0958830 | Msa1401910 | 0.824360 | 8.420265e-54 | -8.615850e-47 |
| Msa0958830 | Msa1409360 | -0.808643 | 2.800304e-50 | -8.615850e-47 |
| Msa0958830 | Msa1422820 | -0.800459 | 1.427092e-48 | -8.615850e-47 |
| Msa0958830 | Msa1429810 | 0.819485 | 1.133166e-52 | -8.615850e-47 |
| Msa0958830 | Msa1434300 | 0.994699 | 1.940321e-209 | -8.615850e-47 |
| Msa0958830 | Msa1436640 | 0.832089 | 1.153080e-55 | -8.615850e-47 |
| Msa0958830 | Msa1459130 | -0.811441 | 6.988936e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958830 | MtrunA17_Chr6g0476311 | 99.552 | 446 | 2 | 0 | 1 | 446 | 1 | 446 | 0.0 | 913 |
| Msa0958830 | MtrunA17_Chr7g0265741 | 88.090 | 445 | 52 | 1 | 2 | 446 | 1 | 444 | 0.0 | 817 |
| Msa0958830 | MtrunA17_Chr2g0307671 | 68.409 | 440 | 126 | 8 | 4 | 442 | 64 | 491 | 0.0 | 600 |
| Msa0958830 | MtrunA17_Chr5g0447311 | 58.879 | 214 | 84 | 3 | 227 | 440 | 19 | 228 | 7.61e-84 | 257 |
| Msa0958830 | MtrunA17_Chr5g0447301 | 60.360 | 222 | 80 | 4 | 5 | 225 | 47 | 261 | 3.71e-83 | 257 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958830 | AT2G36530.1 | 85.618 | 445 | 63 | 1 | 2 | 446 | 1 | 444 | 0.0 | 794 |
| Msa0958830 | AT2G36530.2 | 85.816 | 423 | 59 | 1 | 24 | 446 | 12 | 433 | 0.0 | 755 |
| Msa0958830 | AT1G74030.1 | 68.565 | 439 | 125 | 7 | 5 | 442 | 51 | 477 | 0.0 | 603 |
| Msa0958830 | AT2G29560.1 | 58.352 | 437 | 170 | 7 | 5 | 440 | 47 | 472 | 1.00e-174 | 498 |
Find 141 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCTTATATAGGAATTTA+TGG | 0.097061 | 6_3:+74907023 | Msa0958830:intron |
| GATAATATTGGCACTAATTC+TGG | 0.119811 | 6_3:+74910171 | Msa0958830:three_prime_UTR |
| CTATCTGTACAGGTTGTAAT+TGG | 0.153943 | 6_3:+74907682 | Msa0958830:intron |
| CTCAACCGGAGCCCTGAATT+TGG | 0.244352 | 6_3:-74909814 | None:intergenic |
| TCTATGCTGGTTCCAAATTC+AGG | 0.249066 | 6_3:+74909802 | Msa0958830:CDS |
| GATCTGCGTTGCAGCTTCTT+AGG | 0.251249 | 6_3:+74909751 | Msa0958830:intron |
| GCTTGGAGCCAATGCTATTT+TGG | 0.259393 | 6_3:+74906678 | Msa0958830:intron |
| ATTATAGCACCTGCACTTCT+TGG | 0.259660 | 6_3:+74906348 | Msa0958830:CDS |
| TGCAAAATTAACAGCTGAAA+TGG | 0.260590 | 6_3:+74908004 | Msa0958830:CDS |
| CTCCACCAAGGCTCTGAGTT+TGG | 0.300708 | 6_3:-74909881 | None:intergenic |
| AATTTATGGTTCTCCCTGTT+GGG | 0.305997 | 6_3:+74907037 | Msa0958830:CDS |
| CTTCAACAAAAGGGCATTGC+AGG | 0.318527 | 6_3:-74908199 | None:intergenic |
| GTTTGCATTCAAATATCAAT+AGG | 0.336916 | 6_3:-74909838 | None:intergenic |
| ATTCCATAGGTGAATCAAAT+TGG | 0.350816 | 6_3:+74908335 | Msa0958830:intron |
| GGATCCTCAATTGAGACAAT+TGG | 0.364724 | 6_3:-74907954 | None:intergenic |
| ATGTCTAAAAGTTTAAAGTT+TGG | 0.367590 | 6_3:+74910303 | Msa0958830:three_prime_UTR |
| CATGTAAGGACCTGGATATT+AGG | 0.374562 | 6_3:-74907286 | None:intergenic |
| CGATTTCAGTCTGCTTGGTT+GGG | 0.382650 | 6_3:-74906478 | None:intergenic |
| ATTGCGAAAGCTGGTTATAC+TGG | 0.386445 | 6_3:+74907594 | Msa0958830:CDS |
| TTCATTGCTGATCTCTCAGT+TGG | 0.386617 | 6_3:+74908544 | Msa0958830:CDS |
| TCGATTTCAGTCTGCTTGGT+TGG | 0.393634 | 6_3:-74906479 | None:intergenic |
| GTAAATTTACCTTCAACAAA+AGG | 0.397992 | 6_3:-74908209 | None:intergenic |
| TTGAAAGAAGATGCCCCAAC+AGG | 0.406311 | 6_3:-74907051 | None:intergenic |
| GTTTAAAGTTTGGCATTGTA+TGG | 0.407238 | 6_3:+74910313 | Msa0958830:three_prime_UTR |
| AGCAAGCCTTTCAGATCTGC+AGG | 0.409805 | 6_3:-74909499 | None:intergenic |
| AACATACGACTTGAATTTCA+AGG | 0.411115 | 6_3:+74907747 | Msa0958830:CDS |
| CCTTCATTCAATGTTATCAA+TGG | 0.411786 | 6_3:+74906892 | Msa0958830:CDS |
| TTTATGGTACAGCAGCTTGA+TGG | 0.414709 | 6_3:+74906506 | Msa0958830:CDS |
| CAGCATATTGCAAATCTAGC+TGG | 0.426400 | 6_3:+74906844 | Msa0958830:intron |
| GTTCCTAGTGGTGCTTCAAC+AGG | 0.432093 | 6_3:+74904835 | Msa0958830:CDS |
| GGTGCTGCAGCAGTCTATGC+TGG | 0.437096 | 6_3:+74909789 | Msa0958830:CDS |
| ATAATATTGGCACTAATTCT+GGG | 0.437626 | 6_3:+74910172 | Msa0958830:three_prime_UTR |
| GAATTTATGGTTCTCCCTGT+TGG | 0.438583 | 6_3:+74907036 | Msa0958830:CDS |
| AGGAAATAAGCTTGCAATGC+AGG | 0.439135 | 6_3:+74906927 | Msa0958830:CDS |
| AAATATCAATAGGGCTCAAC+CGG | 0.439901 | 6_3:-74909828 | None:intergenic |
| CTTAGGATTGAGGAGGAGCT+TGG | 0.443795 | 6_3:+74909768 | Msa0958830:CDS |
| ACGAAACTCACTTCGACGGT+TGG | 0.447194 | 6_3:-74904450 | None:intergenic |
| AAAGTTTGGCATTGTATGGT+AGG | 0.453663 | 6_3:+74910317 | Msa0958830:three_prime_UTR |
| GGACATTAACCTTTAGATGA+TGG | 0.455210 | 6_3:-74907104 | None:intergenic |
| TTTGCATTCAAATATCAATA+GGG | 0.458687 | 6_3:-74909837 | None:intergenic |
| ATCCATTCGATCAGGATGAC+TGG | 0.459395 | 6_3:+74907973 | Msa0958830:CDS |
| TTTCAAAGAAGCAATGAAGA+TGG | 0.461088 | 6_3:+74907068 | Msa0958830:CDS |
| TATCTGTACAGGTTGTAATT+GGG | 0.461210 | 6_3:+74907683 | Msa0958830:intron |
| GATCCTCAATTGAGACAATT+GGG | 0.474140 | 6_3:-74907953 | None:intergenic |
| TAGTTATGAAAAGATAATAT+TGG | 0.474560 | 6_3:+74910159 | Msa0958830:three_prime_UTR |
| TCTATGAAGCTCTGGAATTG+AGG | 0.480573 | 6_3:+74906007 | Msa0958830:CDS |
| TAAAGGTGTCTATGAAGCTC+TGG | 0.481476 | 6_3:+74905999 | Msa0958830:intron |
| CGACTTGAATTTCAAGGAAG+AGG | 0.483825 | 6_3:+74907753 | Msa0958830:CDS |
| GTATGGTAGGGAATAAGTTA+AGG | 0.486819 | 6_3:+74910330 | Msa0958830:three_prime_UTR |
| TAAATTTACCTTCAACAAAA+GGG | 0.487915 | 6_3:-74908208 | None:intergenic |
| GCAAAATTAACAGCTGAAAT+GGG | 0.489998 | 6_3:+74908005 | Msa0958830:CDS |
| AAAACTGCCATTGCGAAAGC+TGG | 0.492614 | 6_3:+74907585 | Msa0958830:CDS |
| GAACCTCACATACCTTGTAC+AGG | 0.496717 | 6_3:-74906750 | None:intergenic |
| ACCTTCTTGCAGAATAATGA+TGG | 0.496777 | 6_3:+74907870 | Msa0958830:intron |
| TCTAGCTGGGAACAAGACTT+TGG | 0.498582 | 6_3:+74906858 | Msa0958830:CDS |
| ATCAATGGAGGCTCACATGC+AGG | 0.500978 | 6_3:+74906907 | Msa0958830:CDS |
| CTATGAAGCTCTGGAATTGA+GGG | 0.502002 | 6_3:+74906008 | Msa0958830:CDS |
| AATGTCTAAGCAAGCTGGCT+GGG | 0.502638 | 6_3:+74908388 | Msa0958830:CDS |
| AATTGAGGATCCATTCGATC+AGG | 0.503328 | 6_3:+74907965 | Msa0958830:CDS |
| GTTGCAGCTTCTTAGGATTG+AGG | 0.503659 | 6_3:+74909758 | Msa0958830:intron |
| CTATGCTGGTTCCAAATTCA+GGG | 0.504121 | 6_3:+74909803 | Msa0958830:CDS |
| GAATGTCTAAGCAAGCTGGC+TGG | 0.507863 | 6_3:+74908387 | Msa0958830:CDS |
| GATGGATCAGAGAAAATCTC+AGG | 0.508879 | 6_3:+74907888 | Msa0958830:CDS |
| AAGTTTGGCATTGTATGGTA+GGG | 0.508921 | 6_3:+74910318 | Msa0958830:three_prime_UTR |
| TGGTTCCAAATTCAGGGCTC+CGG | 0.509783 | 6_3:+74909809 | Msa0958830:CDS |
| GCAAGCTGGCTGGGGTGTCA+TGG | 0.510167 | 6_3:+74908397 | Msa0958830:CDS |
| TTCCAAACTCAGAGCCTTGG+TGG | 0.511374 | 6_3:+74909879 | Msa0958830:three_prime_UTR |
| ATTTATGGTTCTCCCTGTTG+GGG | 0.511542 | 6_3:+74907038 | Msa0958830:CDS |
| GTTGATGTTACTCTTAGTGA+TGG | 0.511929 | 6_3:+74904793 | Msa0958830:CDS |
| TGGCTTTGCTCCTAATATCC+AGG | 0.513865 | 6_3:+74907276 | Msa0958830:CDS |
| TCACTCGCTGTCTGTAAAGC+TGG | 0.515005 | 6_3:+74906706 | Msa0958830:CDS |
| AACTGAGAGATCAGCAATGA+AGG | 0.515032 | 6_3:-74908542 | None:intergenic |
| ATGGAGGCTCAGACTACCTC+GGG | 0.523548 | 6_3:+74906031 | Msa0958830:CDS |
| TCATTGCTGATCTCTCAGTT+GGG | 0.526773 | 6_3:+74908545 | Msa0958830:CDS |
| TTCAAAGAAGCAATGAAGAT+GGG | 0.527686 | 6_3:+74907069 | Msa0958830:CDS |
| CTTCGACGGTTGGATTTCCA+CGG | 0.529759 | 6_3:-74904440 | None:intergenic |
| AATACCTTGCCAAGAAGTGC+AGG | 0.533385 | 6_3:-74906357 | None:intergenic |
| CAAACTGCAGCAGTTTATGC+TGG | 0.533458 | 6_3:+74909856 | Msa0958830:three_prime_UTR |
| TTCTATTGTCGCTGACAGCA+CGG | 0.533802 | 6_3:+74909942 | Msa0958830:three_prime_UTR |
| CCTCGGGAAAGGTGTTCTTA+AGG | 0.534627 | 6_3:+74906047 | Msa0958830:CDS |
| ATTGTCGATTTCAGTCTGCT+TGG | 0.534950 | 6_3:-74906483 | None:intergenic |
| TCTATTGTCGCTGACAGCAC+GGG | 0.541951 | 6_3:+74909943 | Msa0958830:three_prime_UTR |
| AATGTATAGGAAAACAAAGA+AGG | 0.543403 | 6_3:+74907549 | Msa0958830:intron |
| AGCATATTGCAAATCTAGCT+GGG | 0.545042 | 6_3:+74906845 | Msa0958830:intron |
| ATGTCTAAGCAAGCTGGCTG+GGG | 0.548350 | 6_3:+74908389 | Msa0958830:CDS |
| GAATTTGATTCTTGCAACGA+TGG | 0.548573 | 6_3:+74904374 | Msa0958830:exon |
| CTACCCAATTGTCTCAATTG+AGG | 0.550872 | 6_3:+74907950 | Msa0958830:CDS |
| TAAGAAAATTCCCCTGTACA+AGG | 0.552280 | 6_3:+74906738 | Msa0958830:CDS |
| ATAACATTGAATGAAGGTAC+AGG | 0.553646 | 6_3:-74906886 | None:intergenic |
| GGCTCAGACTACCTCGGGAA+AGG | 0.554111 | 6_3:+74906036 | Msa0958830:CDS |
| TCATTCAATGTTATCAATGG+AGG | 0.557951 | 6_3:+74906895 | Msa0958830:CDS |
| TACACATATGAACAATATGA+TGG | 0.560505 | 6_3:-74910246 | None:intergenic |
| GCTACTAATGTGGGTGATGA+AGG | 0.562304 | 6_3:+74907253 | Msa0958830:CDS |
| TGGACAAGACGCTACTAATG+TGG | 0.563758 | 6_3:+74907243 | Msa0958830:CDS |
| GTACCTTTGGGTTAGTAACA+AGG | 0.569450 | 6_3:-74908058 | None:intergenic |
| AGCACCTGCACTTCTTGGCA+AGG | 0.574547 | 6_3:+74906353 | Msa0958830:CDS |
| AGAAGTATACCATCATCTAA+AGG | 0.574734 | 6_3:+74907095 | Msa0958830:CDS |
| TCCATTCGATCAGGATGACT+GGG | 0.578303 | 6_3:+74907974 | Msa0958830:CDS |
| TTCTCGAGAAAGTGACAATG+AGG | 0.578518 | 6_3:-74904292 | None:intergenic |
| TAACAGGGTCAGATCAAGAC+GGG | 0.580248 | 6_3:+74909471 | Msa0958830:intron |
| CCATTGATAACATTGAATGA+AGG | 0.584633 | 6_3:-74906892 | None:intergenic |
| GAGCTCCCTGCAGATCTGAA+AGG | 0.586220 | 6_3:+74909493 | Msa0958830:CDS |
| GAAAGCTGGTTATACTGGAA+AGG | 0.586320 | 6_3:+74907599 | Msa0958830:CDS |
| AAACTATTCTCTTATACAGA+CGG | 0.587272 | 6_3:-74909996 | None:intergenic |
| TGGTTCCAAACTCAGAGCCT+TGG | 0.590259 | 6_3:+74909876 | Msa0958830:three_prime_UTR |
| TCCCAGTCATCCTGATCGAA+TGG | 0.592142 | 6_3:-74907975 | None:intergenic |
| GCTAGAGCTGCTGTTCCTAG+TGG | 0.598917 | 6_3:+74904823 | Msa0958830:CDS |
| TTACCTGTTGAAGCACCACT+AGG | 0.600084 | 6_3:-74904838 | None:intergenic |
| GTGGGGATGGTGCAAGCAGA+AGG | 0.600806 | 6_3:+74906541 | Msa0958830:CDS |
| TGACACGGCCAAAATAGCAT+TGG | 0.601819 | 6_3:-74906686 | None:intergenic |
| TTTGATTCTTGCAACGATGG+TGG | 0.604372 | 6_3:+74904377 | Msa0958830:exon |
| CGTCAGATCTTCGATAGCCG+TGG | 0.607772 | 6_3:+74904423 | Msa0958830:CDS |
| GTGAGAATGTCTAAGCAAGC+TGG | 0.607822 | 6_3:+74908383 | Msa0958830:CDS |
| TGATGGAACTGTTAATGAGT+GGG | 0.608667 | 6_3:+74906523 | Msa0958830:CDS |
| GATGGAGGCTCAGACTACCT+CGG | 0.611711 | 6_3:+74906030 | Msa0958830:CDS |
| GCAGCTTCTTAGGATTGAGG+AGG | 0.614625 | 6_3:+74909761 | Msa0958830:intron |
| GCTCTGGAATTGAGGGATGG+AGG | 0.616386 | 6_3:+74906015 | Msa0958830:CDS |
| GGTCAGCAAGTACAGATCGT+TGG | 0.617483 | 6_3:+74908026 | Msa0958830:CDS |
| TGTACAGGTTGTAATTGGGA+TGG | 0.621006 | 6_3:+74907687 | Msa0958830:intron |
| GGACAAGACGCTACTAATGT+GGG | 0.621377 | 6_3:+74907244 | Msa0958830:CDS |
| GCAAGCCTTTCAGATCTGCA+GGG | 0.621624 | 6_3:-74909498 | None:intergenic |
| AGTATAACCAGCTTTCGCAA+TGG | 0.625602 | 6_3:-74907592 | None:intergenic |
| GTGTCATGGCTAGCCACCGA+AGG | 0.625831 | 6_3:+74908411 | Msa0958830:CDS |
| AACCTCACATACCTTGTACA+GGG | 0.626562 | 6_3:-74906749 | None:intergenic |
| ACCTCACATACCTTGTACAG+GGG | 0.630060 | 6_3:-74906748 | None:intergenic |
| GAAGCTCTGGAATTGAGGGA+TGG | 0.631208 | 6_3:+74906012 | Msa0958830:CDS |
| ACTAATGTGGGTGATGAAGG+TGG | 0.648491 | 6_3:+74907256 | Msa0958830:CDS |
| GAACTGTTAATGAGTGGGGA+TGG | 0.649614 | 6_3:+74906528 | Msa0958830:CDS |
| TGAAAGAAGATGCCCCAACA+GGG | 0.650662 | 6_3:-74907050 | None:intergenic |
| AAACACGAAACTCACTTCGA+CGG | 0.663189 | 6_3:-74904454 | None:intergenic |
| TCTCCTTGTTACTAACCCAA+AGG | 0.666416 | 6_3:+74908055 | Msa0958830:CDS |
| TTAACAGGGTCAGATCAAGA+CGG | 0.666581 | 6_3:+74909470 | Msa0958830:intron |
| TGGACGTTCAATACCTTCGG+TGG | 0.670364 | 6_3:-74908424 | None:intergenic |
| AAGGCTTGCTAAGTACAACC+AGG | 0.680165 | 6_3:+74909512 | Msa0958830:CDS |
| TTTACAGACAGCGAGTGACA+CGG | 0.682554 | 6_3:-74906701 | None:intergenic |
| TTATTGTAGTGGTGAAACTG+AGG | 0.684757 | 6_3:+74908516 | Msa0958830:intron |
| ATATTGGCACTAATTCTGGG+TGG | 0.685749 | 6_3:+74910175 | Msa0958830:three_prime_UTR |
| TTGATGGAACTGTTAATGAG+TGG | 0.693093 | 6_3:+74906522 | Msa0958830:CDS |
| CCTTAAGAACACCTTTCCCG+AGG | 0.693320 | 6_3:-74906047 | None:intergenic |
| ATATCAGTAAAGCTCCACCA+AGG | 0.720254 | 6_3:-74909893 | None:intergenic |
| GATGGAACTGTTAATGAGTG+GGG | 0.727197 | 6_3:+74906524 | Msa0958830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTGTCTAATTTT+AGG | + | chr6_3:74904719-74904738 | Msa0958830:intron | 10.0% |
| !! | ACAAAAATATATAGTAAAAA+GGG | - | chr6_3:74906204-74906223 | None:intergenic | 10.0% |
| !! | AACAAAAATATATAGTAAAA+AGG | - | chr6_3:74906205-74906224 | None:intergenic | 10.0% |
| !!! | TTATATTATATGTATTGATT+AGG | + | chr6_3:74906969-74906988 | Msa0958830:intron | 10.0% |
| !!! | TATATTATATGTATTGATTA+GGG | + | chr6_3:74906970-74906989 | Msa0958830:intron | 10.0% |
| !!! | CACATATTTTAATTTTATTT+TGG | - | chr6_3:74908974-74908993 | None:intergenic | 10.0% |
| !!! | ACTATTATAATCAACATTTT+AGG | - | chr6_3:74905314-74905333 | None:intergenic | 15.0% |
| !!! | AAATCGTTTATTTTTGTTAA+AGG | + | chr6_3:74905982-74906001 | Msa0958830:intron | 15.0% |
| !!! | TTTTAGAATAAAAGCAAAAA+TGG | + | chr6_3:74907142-74907161 | Msa0958830:intron | 15.0% |
| !! | AACATTATTCTGTTTAATAT+TGG | + | chr6_3:74908140-74908159 | Msa0958830:intron | 15.0% |
| !! | CGCTAATAAATAAAAAATTA+CGG | - | chr6_3:74908241-74908260 | None:intergenic | 15.0% |
| !!! | CGTAATTTTTTATTTATTAG+CGG | + | chr6_3:74908239-74908258 | Msa0958830:intron | 15.0% |
| !!! | ATGTATATTTTAACATAAGA+GGG | - | chr6_3:74908652-74908671 | None:intergenic | 15.0% |
| !!! | AATGTATATTTTAACATAAG+AGG | - | chr6_3:74908653-74908672 | None:intergenic | 15.0% |
| !! | TTGTTTCATATTTCATAATA+GGG | - | chr6_3:74908950-74908969 | None:intergenic | 15.0% |
| !!! | GAATTAATTTTTTTAAATGG+TGG | + | chr6_3:74909114-74909133 | Msa0958830:intron | 15.0% |
| !! | TATTAAAATAGATTAAAGTG+TGG | + | chr6_3:74909173-74909192 | Msa0958830:intron | 15.0% |
| !! | CATATTTAATTATTAATGGA+GGG | + | chr6_3:74909198-74909217 | Msa0958830:intron | 15.0% |
| !! | ATATTTAATTATTAATGGAG+GGG | + | chr6_3:74909199-74909218 | Msa0958830:intron | 15.0% |
| !!! | AGTATATATTTTAATATCAG+AGG | + | chr6_3:74909282-74909301 | Msa0958830:intron | 15.0% |
| !!! | GTATATATTTTAATATCAGA+GGG | + | chr6_3:74909283-74909302 | Msa0958830:intron | 15.0% |
| !!! | TATATATTTTAATATCAGAG+GGG | + | chr6_3:74909284-74909303 | Msa0958830:intron | 15.0% |
| !!! | TTACAAAATACAATTTTCAA+AGG | - | chr6_3:74909605-74909624 | None:intergenic | 15.0% |
| !!! | TCATTTGATTTAAAAGTTAT+TGG | + | chr6_3:74909633-74909652 | Msa0958830:intron | 15.0% |
| !! | TAGTTATGAAAAGATAATAT+TGG | + | chr6_3:74910159-74910178 | Msa0958830:three_prime_UTR | 15.0% |
| !!! | TTCTTTTTCGTTTTTTTGTT+TGG | + | chr6_3:74904480-74904499 | Msa0958830:intron | 20.0% |
| !! | TTAAATATAATAACATGTGC+TGG | - | chr6_3:74904622-74904641 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGTGAAATAGAA+AGG | + | chr6_3:74904973-74904992 | Msa0958830:intron | 20.0% |
| !! | TAAGCAAAAATCAATATTCT+AGG | + | chr6_3:74905225-74905244 | Msa0958830:intron | 20.0% |
| !! | ATTCATTAAATGATGTATGT+AGG | - | chr6_3:74905251-74905270 | None:intergenic | 20.0% |
| !!! | TTGTTGATTTTAGGAATATT+TGG | + | chr6_3:74905434-74905453 | Msa0958830:intron | 20.0% |
| !!! | ATTTTAGGAATATTTGGATT+AGG | + | chr6_3:74905440-74905459 | Msa0958830:intron | 20.0% |
| !! | TATAAGTAAGTTATTGCTTA+TGG | + | chr6_3:74905699-74905718 | Msa0958830:intron | 20.0% |
| !!! | TAGAAGTTCTTTTCTAATTT+TGG | + | chr6_3:74906106-74906125 | Msa0958830:intron | 20.0% |
| !!! | AGAAGTTCTTTTCTAATTTT+GGG | + | chr6_3:74906107-74906126 | Msa0958830:intron | 20.0% |
| !! | TATATAGTAAAAAGGGATTA+GGG | - | chr6_3:74906197-74906216 | None:intergenic | 20.0% |
| !! | ATATATAGTAAAAAGGGATT+AGG | - | chr6_3:74906198-74906217 | None:intergenic | 20.0% |
| !!! | TTATTTTTTCCTGAATGAAT+TGG | + | chr6_3:74906268-74906287 | Msa0958830:intron | 20.0% |
| !!! | ATAAGATTCCAAATTTGTTT+TGG | + | chr6_3:74906299-74906318 | Msa0958830:intron | 20.0% |
| !! | TATTGTGGAACTATAATATT+GGG | + | chr6_3:74906376-74906395 | Msa0958830:intron | 20.0% |
| !! | AACTATAATATTGGGTTATT+TGG | + | chr6_3:74906384-74906403 | Msa0958830:intron | 20.0% |
| !!! | TATCACTATAGGATTTTTTT+TGG | + | chr6_3:74906564-74906583 | Msa0958830:intron | 20.0% |
| !!! | CTTTTATTCTAAAACAAGTT+AGG | - | chr6_3:74907136-74907155 | None:intergenic | 20.0% |
| !! | AAACACAATATCTTAATTGA+TGG | - | chr6_3:74907194-74907213 | None:intergenic | 20.0% |
| !!! | GTTTATTTTGTTTGCATATT+GGG | + | chr6_3:74907383-74907402 | Msa0958830:intron | 20.0% |
| !! | AAATGTTCTGTTTAATGTAT+AGG | + | chr6_3:74907536-74907555 | Msa0958830:intron | 20.0% |
| !!! | TTCAGAATTTTATGATAACA+AGG | + | chr6_3:74907720-74907739 | Msa0958830:CDS | 20.0% |
| !!! | TCAGAATTTTATGATAACAA+GGG | + | chr6_3:74907721-74907740 | Msa0958830:CDS | 20.0% |
| !!! | AAAGTTAATAAAGTACCTTT+GGG | - | chr6_3:74908073-74908092 | None:intergenic | 20.0% |
| !! | CTTTATTAACTTTCAAACTT+AGG | + | chr6_3:74908080-74908099 | Msa0958830:intron | 20.0% |
| !! | AATAATGTTAAAAACACAAC+AGG | - | chr6_3:74908129-74908148 | None:intergenic | 20.0% |
| !! | TAAATTTACCTTCAACAAAA+GGG | - | chr6_3:74908211-74908230 | None:intergenic | 20.0% |
| !! | AGATTTGATAGAGAATTAAA+AGG | - | chr6_3:74908292-74908311 | None:intergenic | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | - | chr6_3:74908651-74908670 | None:intergenic | 20.0% |
| !!! | TAATATGTTTTGAATAAGAG+GGG | - | chr6_3:74908681-74908700 | None:intergenic | 20.0% |
| !!! | CTAATATGTTTTGAATAAGA+GGG | - | chr6_3:74908682-74908701 | None:intergenic | 20.0% |
| !!! | TCTAATATGTTTTGAATAAG+AGG | - | chr6_3:74908683-74908702 | None:intergenic | 20.0% |
| !! | CTTAGAAAAAAATAGTATTG+CGG | + | chr6_3:74908843-74908862 | Msa0958830:intron | 20.0% |
| !! | TTAGAAAAAAATAGTATTGC+GGG | + | chr6_3:74908844-74908863 | Msa0958830:intron | 20.0% |
| !!! | GTTGTTTCATATTTCATAAT+AGG | - | chr6_3:74908951-74908970 | None:intergenic | 20.0% |
| !! | GGTGCATATTTAATTATTAA+TGG | + | chr6_3:74909194-74909213 | Msa0958830:intron | 20.0% |
| !! | GCATATTTAATTATTAATGG+AGG | + | chr6_3:74909197-74909216 | Msa0958830:intron | 20.0% |
| !! | TATTTAATTATTAATGGAGG+GGG | + | chr6_3:74909200-74909219 | Msa0958830:intron | 20.0% |
| !!! | ACTTTTAAATCAAATGAACA+TGG | - | chr6_3:74909630-74909649 | None:intergenic | 20.0% |
| !!! | ATTTCACATTATTCTTTTGT+TGG | - | chr6_3:74909670-74909689 | None:intergenic | 20.0% |
| !! | TTTGCATTCAAATATCAATA+GGG | - | chr6_3:74909840-74909859 | None:intergenic | 20.0% |
| !!! | AACTTTAAACTTTTAGACAT+AGG | - | chr6_3:74910303-74910322 | None:intergenic | 20.0% |
| !!! | ATGTCTAAAAGTTTAAAGTT+TGG | + | chr6_3:74910303-74910322 | Msa0958830:three_prime_UTR | 20.0% |
| !!! | TCATTGATTATTACAGGTTT+TGG | + | chr6_3:74904691-74904710 | Msa0958830:intron | 25.0% |
| !!! | ATTTTGGTTTGGTTATTGTT+AGG | + | chr6_3:74904771-74904790 | Msa0958830:intron | 25.0% |
| ! | GTAAATGATTGGTGAAAATT+TGG | + | chr6_3:74904857-74904876 | Msa0958830:intron | 25.0% |
| !!! | ATTTGAGGAATGTTTTGATT+TGG | + | chr6_3:74904927-74904946 | Msa0958830:intron | 25.0% |
| !!! | TTGATTTGGTACATTTTTGT+AGG | + | chr6_3:74904941-74904960 | Msa0958830:intron | 25.0% |
| !!! | TGATTTGGTACATTTTTGTA+GGG | + | chr6_3:74904942-74904961 | Msa0958830:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr6_3:74905215-74905234 | None:intergenic | 25.0% |
| !! | ATGTTGATTATAATAGTGAC+CGG | + | chr6_3:74905317-74905336 | Msa0958830:intron | 25.0% |
| ! | TGTTTCAAAAGGTAAATGAT+TGG | + | chr6_3:74905356-74905375 | Msa0958830:intron | 25.0% |
| ! | AAATGAATGTTGAACTTGAA+GGG | + | chr6_3:74905514-74905533 | Msa0958830:intron | 25.0% |
| ! | TTAACTAACATGTATATGAC+TGG | + | chr6_3:74905551-74905570 | Msa0958830:intron | 25.0% |
| !! | CAGATACTGAGATTTTTAAA+AGG | - | chr6_3:74906148-74906167 | None:intergenic | 25.0% |
| ! | CTAAAACAAACATAAGTTAC+TGG | - | chr6_3:74906230-74906249 | None:intergenic | 25.0% |
| !!! | CAGTAACTTATGTTTGTTTT+AGG | + | chr6_3:74906228-74906247 | Msa0958830:intron | 25.0% |
| ! | GTATTGTGGAACTATAATAT+TGG | + | chr6_3:74906375-74906394 | Msa0958830:intron | 25.0% |
| !!! | GCATTAATTTTTTGCTGATT+GGG | + | chr6_3:74906632-74906651 | Msa0958830:intron | 25.0% |
| ! | ACCATAAATTCCTATATAAG+AGG | - | chr6_3:74907027-74907046 | None:intergenic | 25.0% |
| !!! | TCAAATCATGAACTACTTTT+AGG | - | chr6_3:74907342-74907361 | None:intergenic | 25.0% |
| !!! | CGTTTATTTTGTTTGCATAT+TGG | + | chr6_3:74907382-74907401 | Msa0958830:intron | 25.0% |
| ! | TTGTAGTGTGATAATTCAAA+TGG | + | chr6_3:74907411-74907430 | Msa0958830:intron | 25.0% |
| ! | TGTAGTGTGATAATTCAAAT+GGG | + | chr6_3:74907412-74907431 | Msa0958830:intron | 25.0% |
| ! | AATGTATAGGAAAACAAAGA+AGG | + | chr6_3:74907549-74907568 | Msa0958830:intron | 25.0% |
| ! | ATGTATTAAGATGCTAAGTT+AGG | - | chr6_3:74907645-74907664 | None:intergenic | 25.0% |
| ! | TGATTAATTTCTATCTGTAC+AGG | + | chr6_3:74907672-74907691 | Msa0958830:intron | 25.0% |
| !!! | TTGCTCTATTTTTATTCCTT+TGG | + | chr6_3:74907804-74907823 | Msa0958830:intron | 25.0% |
| !! | GAAAGTTAATAAAGTACCTT+TGG | - | chr6_3:74908074-74908093 | None:intergenic | 25.0% |
| ! | GTAAATTTACCTTCAACAAA+AGG | - | chr6_3:74908212-74908231 | None:intergenic | 25.0% |
| ! | AAATAAAAAATTACGGCTGA+AGG | - | chr6_3:74908234-74908253 | None:intergenic | 25.0% |
| ! | AAAAGGATAGTTCATTAAGA+TGG | - | chr6_3:74908275-74908294 | None:intergenic | 25.0% |
| ! | TTCTTTATAACCTATTCCAT+AGG | + | chr6_3:74908322-74908341 | Msa0958830:intron | 25.0% |
| ! | ATTAGAAAACAGAACTGAAT+GGG | - | chr6_3:74908457-74908476 | None:intergenic | 25.0% |
| !! | GTTAATCTTGTTTATTGTAG+TGG | + | chr6_3:74908505-74908524 | Msa0958830:intron | 25.0% |
| ! | AATTCAAAATCTTCTCTTAG+GGG | - | chr6_3:74908723-74908742 | None:intergenic | 25.0% |
| ! | CAATTCAAAATCTTCTCTTA+GGG | - | chr6_3:74908724-74908743 | None:intergenic | 25.0% |
| ! | ACTACATGTTATTGAAATTG+TGG | - | chr6_3:74908921-74908940 | None:intergenic | 25.0% |
| ! | TTACTAAAGACAATAAAGCA+TGG | + | chr6_3:74908999-74909018 | Msa0958830:intron | 25.0% |
| ! | TGTAATTCAAGCATCTTATA+AGG | + | chr6_3:74909224-74909243 | Msa0958830:intron | 25.0% |
| ! | GTAATTCAAGCATCTTATAA+GGG | + | chr6_3:74909225-74909244 | Msa0958830:intron | 25.0% |
| ! | ATTCTATGTCATTGTTTAAC+AGG | + | chr6_3:74909455-74909474 | Msa0958830:intron | 25.0% |
| ! | TTCTATGTCATTGTTTAACA+GGG | + | chr6_3:74909456-74909475 | Msa0958830:intron | 25.0% |
| !! | TTTGATAATTGAGCTGAATA+CGG | + | chr6_3:74909557-74909576 | Msa0958830:intron | 25.0% |
| ! | GTTTGCATTCAAATATCAAT+AGG | - | chr6_3:74909841-74909860 | None:intergenic | 25.0% |
| ! | AAACTATTCTCTTATACAGA+CGG | - | chr6_3:74909999-74910018 | None:intergenic | 25.0% |
| ! | ATAATATTGGCACTAATTCT+GGG | + | chr6_3:74910172-74910191 | Msa0958830:three_prime_UTR | 25.0% |
| ! | TACACATATGAACAATATGA+TGG | - | chr6_3:74910249-74910268 | None:intergenic | 25.0% |
| ! | ACTTATTCGATTAGAAGTGT+CGG | - | chr6_3:74904589-74904608 | None:intergenic | 30.0% |
| ACTTCTAATCGAATAAGTGT+CGG | + | chr6_3:74904591-74904610 | Msa0958830:intron | 30.0% | |
| !!! | TGTAGTTTCTGATTTTGGTT+TGG | + | chr6_3:74904760-74904779 | Msa0958830:intron | 30.0% |
| !! | TATGTTTTTGCATAGACATG+TGG | + | chr6_3:74905081-74905100 | Msa0958830:intron | 30.0% |
| !!! | TGTGCTTGTTTGTTGATTTT+AGG | + | chr6_3:74905425-74905444 | Msa0958830:intron | 30.0% |
| GAAATGAATGTTGAACTTGA+AGG | + | chr6_3:74905513-74905532 | Msa0958830:intron | 30.0% | |
| ATATGACTGGTGTACTATAT+AGG | + | chr6_3:74905564-74905583 | Msa0958830:intron | 30.0% | |
| !!! | ACACGTGTAATGCATTTTTT+AGG | + | chr6_3:74905641-74905660 | Msa0958830:intron | 30.0% |
| AGTAAGTTATTGCTTATGGA+TGG | + | chr6_3:74905703-74905722 | Msa0958830:intron | 30.0% | |
| !! | TCTAATTTTGGGAAGAATGA+TGG | + | chr6_3:74906118-74906137 | Msa0958830:intron | 30.0% |
| !!! | TTCCAAATTTGTTTTGGCTT+AGG | + | chr6_3:74906305-74906324 | Msa0958830:intron | 30.0% |
| ! | TAAATCCAGTTTTTACAGAG+TGG | + | chr6_3:74906424-74906443 | Msa0958830:intron | 30.0% |
| TGTTATCTGTGTTTACATAC+AGG | + | chr6_3:74906454-74906473 | Msa0958830:intron | 30.0% | |
| ! | GACTGAAATCGACAATTTTA+TGG | + | chr6_3:74906490-74906509 | Msa0958830:CDS | 30.0% |
| !!! | ATTTTTTGTGACTGCGTTTA+TGG | + | chr6_3:74906589-74906608 | Msa0958830:intron | 30.0% |
| !!! | GGCATTAATTTTTTGCTGAT+TGG | + | chr6_3:74906631-74906650 | Msa0958830:intron | 30.0% |
| AGCTGAAAATTACAAGATTG+TGG | - | chr6_3:74906661-74906680 | None:intergenic | 30.0% | |
| ! | CAATCTTGTAATTTTCAGCT+TGG | + | chr6_3:74906661-74906680 | Msa0958830:intron | 30.0% |
| TAGTAACGATAGTTTCTATC+TGG | + | chr6_3:74906773-74906792 | Msa0958830:intron | 30.0% | |
| ! | ATAACATTGAATGAAGGTAC+AGG | - | chr6_3:74906889-74906908 | None:intergenic | 30.0% |
| ! | CCATTGATAACATTGAATGA+AGG | - | chr6_3:74906895-74906914 | None:intergenic | 30.0% |
| CCTTCATTCAATGTTATCAA+TGG | + | chr6_3:74906892-74906911 | Msa0958830:CDS | 30.0% | |
| TCATTCAATGTTATCAATGG+AGG | + | chr6_3:74906895-74906914 | Msa0958830:CDS | 30.0% | |
| GCCTCTTATATAGGAATTTA+TGG | + | chr6_3:74907023-74907042 | Msa0958830:intron | 30.0% | |
| TTTCAAAGAAGCAATGAAGA+TGG | + | chr6_3:74907068-74907087 | Msa0958830:CDS | 30.0% | |
| TTCAAAGAAGCAATGAAGAT+GGG | + | chr6_3:74907069-74907088 | Msa0958830:CDS | 30.0% | |
| ! | AGAAGTATACCATCATCTAA+AGG | + | chr6_3:74907095-74907114 | Msa0958830:CDS | 30.0% |
| CTAAAACAAGTTAGGCAAAA+AGG | - | chr6_3:74907128-74907147 | None:intergenic | 30.0% | |
| TAAAAGCAAAAATGGATGAC+AGG | + | chr6_3:74907150-74907169 | Msa0958830:intron | 30.0% | |
| AGATATTGTGTTTGCCTTAT+AGG | + | chr6_3:74907201-74907220 | Msa0958830:intron | 30.0% | |
| ! | CTTTTTAATCACAGCCTATA+AGG | - | chr6_3:74907218-74907237 | None:intergenic | 30.0% |
| GCTGTGATTAAAAAGAAGTA+TGG | + | chr6_3:74907223-74907242 | Msa0958830:CDS | 30.0% | |
| ACATGAAAAATGTCTAGAGA+TGG | - | chr6_3:74907489-74907508 | None:intergenic | 30.0% | |
| TATCTGTACAGGTTGTAATT+GGG | + | chr6_3:74907683-74907702 | Msa0958830:intron | 30.0% | |
| AACATACGACTTGAATTTCA+AGG | + | chr6_3:74907747-74907766 | Msa0958830:CDS | 30.0% | |
| TGAAGAATATATCTCACCAA+AGG | - | chr6_3:74907823-74907842 | None:intergenic | 30.0% | |
| CTTCATCAAATGCTTTAACT+AGG | + | chr6_3:74907838-74907857 | Msa0958830:intron | 30.0% | |
| TGCAAAATTAACAGCTGAAA+TGG | + | chr6_3:74908004-74908023 | Msa0958830:CDS | 30.0% | |
| GCAAAATTAACAGCTGAAAT+GGG | + | chr6_3:74908005-74908024 | Msa0958830:CDS | 30.0% | |
| ATTTGATTCACCTATGGAAT+AGG | - | chr6_3:74908335-74908354 | None:intergenic | 30.0% | |
| ATTCCATAGGTGAATCAAAT+TGG | + | chr6_3:74908335-74908354 | Msa0958830:intron | 30.0% | |
| CATTAGAAAACAGAACTGAA+TGG | - | chr6_3:74908458-74908477 | None:intergenic | 30.0% | |
| AACACATTAGTGTCTATGTA+CGG | - | chr6_3:74908488-74908507 | None:intergenic | 30.0% | |
| TGTAATTCAAGCATCTTTGA+GGG | - | chr6_3:74908621-74908640 | None:intergenic | 30.0% | |
| !!! | TATTTTAACATAAGAGGGGA+GGG | - | chr6_3:74908647-74908666 | None:intergenic | 30.0% |
| !!! | ATATTTTAACATAAGAGGGG+AGG | - | chr6_3:74908648-74908667 | None:intergenic | 30.0% |
| GCAATTCAAAATCTTCTCTT+AGG | - | chr6_3:74908725-74908744 | None:intergenic | 30.0% | |
| !! | TGTAGGTTTTAACATAAGAG+AGG | - | chr6_3:74908757-74908776 | None:intergenic | 30.0% |
| !!! | ATATTTTAATATCAGAGGGG+AGG | + | chr6_3:74909287-74909306 | Msa0958830:intron | 30.0% |
| !!! | TATTTTAATATCAGAGGGGA+GGG | + | chr6_3:74909288-74909307 | Msa0958830:intron | 30.0% |
| TGTTATTCAAGCATCTTTGA+GGG | + | chr6_3:74909314-74909333 | Msa0958830:intron | 30.0% | |
| TTGTTTGACATGAAGCTTAT+CGG | - | chr6_3:74909369-74909388 | None:intergenic | 30.0% | |
| ! | CATGTCAAGATTTTGTAACT+TGG | + | chr6_3:74909391-74909410 | Msa0958830:intron | 30.0% |
| ! | ATCAAAGATAAGGAGTTTTG+TGG | - | chr6_3:74909543-74909562 | None:intergenic | 30.0% |
| CAGCTCAATTATCAAAGATA+AGG | - | chr6_3:74909553-74909572 | None:intergenic | 30.0% | |
| TAAAAGTTATTGGATGCCTT+AGG | + | chr6_3:74909643-74909662 | Msa0958830:intron | 30.0% | |
| AAAAGTTATTGGATGCCTTA+GGG | + | chr6_3:74909644-74909663 | Msa0958830:intron | 30.0% | |
| ATCAAAGAGGTTCAAAACAA+TGG | - | chr6_3:74909734-74909753 | None:intergenic | 30.0% | |
| ! | TTTTGTCGAGTGTGTAATTT+TGG | + | chr6_3:74910051-74910070 | Msa0958830:three_prime_UTR | 30.0% |
| GATAATATTGGCACTAATTC+TGG | + | chr6_3:74910171-74910190 | Msa0958830:three_prime_UTR | 30.0% | |
| ! | GTTTAAAGTTTGGCATTGTA+TGG | + | chr6_3:74910313-74910332 | Msa0958830:three_prime_UTR | 30.0% |
| !! | GTGTTTCTGTGATTTTCTGA+GGG | - | chr6_3:74904323-74904342 | None:intergenic | 35.0% |
| !! | AGTGTTTCTGTGATTTTCTG+AGG | - | chr6_3:74904324-74904343 | None:intergenic | 35.0% |
| GAATTTGATTCTTGCAACGA+TGG | + | chr6_3:74904374-74904393 | Msa0958830:exon | 35.0% | |
| TTGGAAACTGAGAAAATGAG+CGG | + | chr6_3:74904499-74904518 | Msa0958830:intron | 35.0% | |
| ! | GGTGCTTCATTGATTATTAC+AGG | + | chr6_3:74904685-74904704 | Msa0958830:intron | 35.0% |
| ! | GAAGCTGTAGTTTCTGATTT+TGG | + | chr6_3:74904755-74904774 | Msa0958830:intron | 35.0% |
| GTTGATGTTACTCTTAGTGA+TGG | + | chr6_3:74904793-74904812 | Msa0958830:CDS | 35.0% | |
| TGCTTCAACAGGTAAATGAT+TGG | + | chr6_3:74904846-74904865 | Msa0958830:intron | 35.0% | |
| TCAACTGTTTGTGTGATTTG+AGG | + | chr6_3:74904912-74904931 | Msa0958830:intron | 35.0% | |
| !!! | GAAGTTGATGTGATGTTTTG+TGG | + | chr6_3:74905002-74905021 | Msa0958830:intron | 35.0% |
| TTGATTATAATAGTGACCGG+AGG | + | chr6_3:74905320-74905339 | Msa0958830:intron | 35.0% | |
| TGATTATAATAGTGACCGGA+GGG | + | chr6_3:74905321-74905340 | Msa0958830:intron | 35.0% | |
| ! | GTAGGCTTTTGTGTTTCAAA+AGG | + | chr6_3:74905345-74905364 | Msa0958830:intron | 35.0% |
| !!! | TGGATTAGGTACGTTTTTTG+TGG | + | chr6_3:74905454-74905473 | Msa0958830:intron | 35.0% |
| ATGTCAAATTGATTGCACGT+TGG | + | chr6_3:74905818-74905837 | Msa0958830:intron | 35.0% | |
| ! | CTGAGCTTCATAGCTTTTAT+TGG | + | chr6_3:74905929-74905948 | Msa0958830:intron | 35.0% |
| TTATCAGCTCCAATTCATTC+AGG | - | chr6_3:74906280-74906299 | None:intergenic | 35.0% | |
| AGCCTAAGCCAAAACAAATT+TGG | - | chr6_3:74906310-74906329 | None:intergenic | 35.0% | |
| TTGATGGAACTGTTAATGAG+TGG | + | chr6_3:74906522-74906541 | Msa0958830:CDS | 35.0% | |
| TGATGGAACTGTTAATGAGT+GGG | + | chr6_3:74906523-74906542 | Msa0958830:CDS | 35.0% | |
| TAAGAAAATTCCCCTGTACA+AGG | + | chr6_3:74906738-74906757 | Msa0958830:CDS | 35.0% | |
| !! | TGTGTTCTCATGGATTGTTT+TGG | + | chr6_3:74906802-74906821 | Msa0958830:intron | 35.0% |
| AGCATATTGCAAATCTAGCT+GGG | + | chr6_3:74906845-74906864 | Msa0958830:intron | 35.0% | |
| TATCCTTCTGCCTCTTATAT+AGG | + | chr6_3:74907014-74907033 | Msa0958830:intron | 35.0% | |
| ATTCCTATATAAGAGGCAGA+AGG | - | chr6_3:74907020-74907039 | None:intergenic | 35.0% | |
| AATTTATGGTTCTCCCTGTT+GGG | + | chr6_3:74907037-74907056 | Msa0958830:CDS | 35.0% | |
| GGACATTAACCTTTAGATGA+TGG | - | chr6_3:74907107-74907126 | None:intergenic | 35.0% | |
| ! | AAAACCAGAAGAAGCATGTA+AGG | - | chr6_3:74907303-74907322 | None:intergenic | 35.0% |
| ! | ATTTGAGTTCTCGCAATTAG+TGG | + | chr6_3:74907356-74907375 | Msa0958830:intron | 35.0% |
| CTATCTGTACAGGTTGTAAT+TGG | + | chr6_3:74907682-74907701 | Msa0958830:intron | 35.0% | |
| ACCTTCTTGCAGAATAATGA+TGG | + | chr6_3:74907870-74907889 | Msa0958830:intron | 35.0% | |
| TCCATCATTATTCTGCAAGA+AGG | - | chr6_3:74907874-74907893 | None:intergenic | 35.0% | |
| GATCCTCAATTGAGACAATT+GGG | - | chr6_3:74907956-74907975 | None:intergenic | 35.0% | |
| CTACCAATTTGATTCACCTA+TGG | - | chr6_3:74908341-74908360 | None:intergenic | 35.0% | |
| AGAACTGAATGGGAAAACAA+TGG | - | chr6_3:74908447-74908466 | None:intergenic | 35.0% | |
| TTATTGTAGTGGTGAAACTG+AGG | + | chr6_3:74908516-74908535 | Msa0958830:intron | 35.0% | |
| GTAATTCAAGCATCTTTGAG+GGG | - | chr6_3:74908620-74908639 | None:intergenic | 35.0% | |
| GTGTAATTCAAGCATCTTTG+AGG | - | chr6_3:74908622-74908641 | None:intergenic | 35.0% | |
| !! | ATTTTAACATAAGAGGGGAG+GGG | - | chr6_3:74908646-74908665 | None:intergenic | 35.0% |
| !! | ATGTTTTGAATAAGAGGGGA+GGG | - | chr6_3:74908677-74908696 | None:intergenic | 35.0% |
| !! | TATGTTTTGAATAAGAGGGG+AGG | - | chr6_3:74908678-74908697 | None:intergenic | 35.0% |
| !! | GGTTTTAACATAAGAGAGGA+AGG | - | chr6_3:74908753-74908772 | None:intergenic | 35.0% |
| ATATTGAGGGAGTAAAGTGT+AGG | - | chr6_3:74908774-74908793 | None:intergenic | 35.0% | |
| ATTCAAGCATCTTATAAGGG+AGG | + | chr6_3:74909228-74909247 | Msa0958830:intron | 35.0% | |
| TTCAAGCATCTTATAAGGGA+GGG | + | chr6_3:74909229-74909248 | Msa0958830:intron | 35.0% | |
| !! | ATTTTAATATCAGAGGGGAG+GGG | + | chr6_3:74909289-74909308 | Msa0958830:intron | 35.0% |
| ! | GTGTTATTCAAGCATCTTTG+AGG | + | chr6_3:74909313-74909332 | Msa0958830:intron | 35.0% |
| GTTATTCAAGCATCTTTGAG+GGG | + | chr6_3:74909315-74909334 | Msa0958830:intron | 35.0% | |
| CTTATAAGCTTCAACAGAGA+AGG | - | chr6_3:74909427-74909446 | None:intergenic | 35.0% | |
| AAGGCATAACTAGCTATTGA+AGG | - | chr6_3:74909586-74909605 | None:intergenic | 35.0% | |
| ! | TTATTCTTTTGTTGGCCCTA+AGG | - | chr6_3:74909662-74909681 | None:intergenic | 35.0% |
| AAATATCAATAGGGCTCAAC+CGG | - | chr6_3:74909831-74909850 | None:intergenic | 35.0% | |
| !!! | AGTGTGTAATTTTGGAACGA+GGG | + | chr6_3:74910059-74910078 | Msa0958830:three_prime_UTR | 35.0% |
| AAAGTTTGGCATTGTATGGT+AGG | + | chr6_3:74910317-74910336 | Msa0958830:three_prime_UTR | 35.0% | |
| AAGTTTGGCATTGTATGGTA+GGG | + | chr6_3:74910318-74910337 | Msa0958830:three_prime_UTR | 35.0% | |
| TTCTCGAGAAAGTGACAATG+AGG | - | chr6_3:74904295-74904314 | None:intergenic | 40.0% | |
| TTTGATTCTTGCAACGATGG+TGG | + | chr6_3:74904377-74904396 | Msa0958830:exon | 40.0% | |
| AAACACGAAACTCACTTCGA+CGG | - | chr6_3:74904457-74904476 | None:intergenic | 40.0% | |
| TGGAAACTGAGAAAATGAGC+GGG | + | chr6_3:74904500-74904519 | Msa0958830:intron | 40.0% | |
| TGCTTATAATAGTGACCGGT+GGG | - | chr6_3:74905211-74905230 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+TGG | - | chr6_3:74905212-74905231 | None:intergenic | 40.0% | |
| TACACGTGTCAATGTTGCAT+TGG | - | chr6_3:74905630-74905649 | None:intergenic | 40.0% | |
| ! | GCATGACTTGTGTACTATGT+AGG | + | chr6_3:74905789-74905808 | Msa0958830:intron | 40.0% |
| TCTGATGCAAAACTGACATG+TGG | + | chr6_3:74905848-74905867 | Msa0958830:intron | 40.0% | |
| !! | TAAAGGTGTCTATGAAGCTC+TGG | + | chr6_3:74905999-74906018 | Msa0958830:intron | 40.0% |
| !! | TCTATGAAGCTCTGGAATTG+AGG | + | chr6_3:74906007-74906026 | Msa0958830:CDS | 40.0% |
| !! | CTATGAAGCTCTGGAATTGA+GGG | + | chr6_3:74906008-74906027 | Msa0958830:CDS | 40.0% |
| ATTATAGCACCTGCACTTCT+TGG | + | chr6_3:74906348-74906367 | Msa0958830:CDS | 40.0% | |
| TTCAGCCACTCTGTAAAAAC+TGG | - | chr6_3:74906432-74906451 | None:intergenic | 40.0% | |
| !! | ATTGTCGATTTCAGTCTGCT+TGG | - | chr6_3:74906486-74906505 | None:intergenic | 40.0% |
| TTTATGGTACAGCAGCTTGA+TGG | + | chr6_3:74906506-74906525 | Msa0958830:CDS | 40.0% | |
| GATGGAACTGTTAATGAGTG+GGG | + | chr6_3:74906524-74906543 | Msa0958830:CDS | 40.0% | |
| !! | CAAGCAGAAGGTATCACTAT+AGG | + | chr6_3:74906553-74906572 | Msa0958830:intron | 40.0% |
| GGAGACGGTAATAGACTAAT+AGG | + | chr6_3:74906610-74906629 | Msa0958830:intron | 40.0% | |
| AACCTCACATACCTTGTACA+GGG | - | chr6_3:74906752-74906771 | None:intergenic | 40.0% | |
| CTGGTTAGATTGTGTTCTCA+TGG | + | chr6_3:74906792-74906811 | Msa0958830:intron | 40.0% | |
| CAGCATATTGCAAATCTAGC+TGG | + | chr6_3:74906844-74906863 | Msa0958830:intron | 40.0% | |
| AGGAAATAAGCTTGCAATGC+AGG | + | chr6_3:74906927-74906946 | Msa0958830:CDS | 40.0% | |
| GAATTTATGGTTCTCCCTGT+TGG | + | chr6_3:74907036-74907055 | Msa0958830:CDS | 40.0% | |
| ATTTATGGTTCTCCCTGTTG+GGG | + | chr6_3:74907038-74907057 | Msa0958830:CDS | 40.0% | |
| CATGTAAGGACCTGGATATT+AGG | - | chr6_3:74907289-74907308 | None:intergenic | 40.0% | |
| AGTATAACCAGCTTTCGCAA+TGG | - | chr6_3:74907595-74907614 | None:intergenic | 40.0% | |
| ATTGCGAAAGCTGGTTATAC+TGG | + | chr6_3:74907594-74907613 | Msa0958830:CDS | 40.0% | |
| GAAAGCTGGTTATACTGGAA+AGG | + | chr6_3:74907599-74907618 | Msa0958830:CDS | 40.0% | |
| TGTACAGGTTGTAATTGGGA+TGG | + | chr6_3:74907687-74907706 | Msa0958830:intron | 40.0% | |
| CGACTTGAATTTCAAGGAAG+AGG | + | chr6_3:74907753-74907772 | Msa0958830:CDS | 40.0% | |
| GATGGATCAGAGAAAATCTC+AGG | + | chr6_3:74907888-74907907 | Msa0958830:CDS | 40.0% | |
| CTACCCAATTGTCTCAATTG+AGG | + | chr6_3:74907950-74907969 | Msa0958830:CDS | 40.0% | |
| GGATCCTCAATTGAGACAAT+TGG | - | chr6_3:74907957-74907976 | None:intergenic | 40.0% | |
| AATTGAGGATCCATTCGATC+AGG | + | chr6_3:74907965-74907984 | Msa0958830:CDS | 40.0% | |
| TCTCCTTGTTACTAACCCAA+AGG | + | chr6_3:74908055-74908074 | Msa0958830:CDS | 40.0% | |
| !! | GTACCTTTGGGTTAGTAACA+AGG | - | chr6_3:74908061-74908080 | None:intergenic | 40.0% |
| CACAACAGGATACATGTTTG+TGG | - | chr6_3:74908115-74908134 | None:intergenic | 40.0% | |
| !! | AATATTGGTTCCTTAGCGTG+TGG | + | chr6_3:74908155-74908174 | Msa0958830:intron | 40.0% |
| !!! | ATTGCTTTTTCCACACGCTA+AGG | - | chr6_3:74908168-74908187 | None:intergenic | 40.0% |
| CAATGGACGTTCAATACCTT+CGG | - | chr6_3:74908430-74908449 | None:intergenic | 40.0% | |
| AACTGAGAGATCAGCAATGA+AGG | - | chr6_3:74908545-74908564 | None:intergenic | 40.0% | |
| TTCATTGCTGATCTCTCAGT+TGG | + | chr6_3:74908544-74908563 | Msa0958830:CDS | 40.0% | |
| TCATTGCTGATCTCTCAGTT+GGG | + | chr6_3:74908545-74908564 | Msa0958830:CDS | 40.0% | |
| !! | TGTTTTGAATAAGAGGGGAG+GGG | - | chr6_3:74908676-74908695 | None:intergenic | 40.0% |
| AAAATCTTCTCTTAGGGGAG+GGG | - | chr6_3:74908718-74908737 | None:intergenic | 40.0% | |
| CAAAATCTTCTCTTAGGGGA+GGG | - | chr6_3:74908719-74908738 | None:intergenic | 40.0% | |
| TCAAAATCTTCTCTTAGGGG+AGG | - | chr6_3:74908720-74908739 | None:intergenic | 40.0% | |
| TCAAGCATCTTATAAGGGAG+GGG | + | chr6_3:74909230-74909249 | Msa0958830:intron | 40.0% | |
| TTAACAGGGTCAGATCAAGA+CGG | + | chr6_3:74909470-74909489 | Msa0958830:intron | 40.0% | |
| !! | AGGAGTTTTGTGGTTTTACC+TGG | - | chr6_3:74909533-74909552 | None:intergenic | 40.0% |
| !! | TCTATGCTGGTTCCAAATTC+AGG | + | chr6_3:74909802-74909821 | Msa0958830:CDS | 40.0% |
| !! | CTATGCTGGTTCCAAATTCA+GGG | + | chr6_3:74909803-74909822 | Msa0958830:CDS | 40.0% |
| ATATCAGTAAAGCTCCACCA+AGG | - | chr6_3:74909896-74909915 | None:intergenic | 40.0% | |
| !!! | GAGTGTGTAATTTTGGAACG+AGG | + | chr6_3:74910058-74910077 | Msa0958830:three_prime_UTR | 40.0% |
| ATATTGGCACTAATTCTGGG+TGG | + | chr6_3:74910175-74910194 | Msa0958830:three_prime_UTR | 40.0% | |
| ! | TTACCTGTTGAAGCACCACT+AGG | - | chr6_3:74904841-74904860 | None:intergenic | 45.0% |
| GAACTTGAAGGGATGCTTTG+TGG | + | chr6_3:74905525-74905544 | Msa0958830:intron | 45.0% | |
| ! | ATGTTGCATTGGCCACATGT+CGG | - | chr6_3:74905619-74905638 | None:intergenic | 45.0% |
| ! | AATACCTTGCCAAGAAGTGC+AGG | - | chr6_3:74906360-74906379 | None:intergenic | 45.0% |
| !! | CACTTCTTGGCAAGGTATTG+TGG | + | chr6_3:74906361-74906380 | Msa0958830:intron | 45.0% |
| CGATTTCAGTCTGCTTGGTT+GGG | - | chr6_3:74906481-74906500 | None:intergenic | 45.0% | |
| TCGATTTCAGTCTGCTTGGT+TGG | - | chr6_3:74906482-74906501 | None:intergenic | 45.0% | |
| GAACTGTTAATGAGTGGGGA+TGG | + | chr6_3:74906528-74906547 | Msa0958830:CDS | 45.0% | |
| TGTGACTGCGTTTATGGAGA+CGG | + | chr6_3:74906595-74906614 | Msa0958830:intron | 45.0% | |
| !! | GCTTGGAGCCAATGCTATTT+TGG | + | chr6_3:74906678-74906697 | Msa0958830:intron | 45.0% |
| TGACACGGCCAAAATAGCAT+TGG | - | chr6_3:74906689-74906708 | None:intergenic | 45.0% | |
| TTTACAGACAGCGAGTGACA+CGG | - | chr6_3:74906704-74906723 | None:intergenic | 45.0% | |
| ACCTCACATACCTTGTACAG+GGG | - | chr6_3:74906751-74906770 | None:intergenic | 45.0% | |
| GAACCTCACATACCTTGTAC+AGG | - | chr6_3:74906753-74906772 | None:intergenic | 45.0% | |
| TCTAGCTGGGAACAAGACTT+TGG | + | chr6_3:74906858-74906877 | Msa0958830:CDS | 45.0% | |
| TGAAAGAAGATGCCCCAACA+GGG | - | chr6_3:74907053-74907072 | None:intergenic | 45.0% | |
| TTGAAAGAAGATGCCCCAAC+AGG | - | chr6_3:74907054-74907073 | None:intergenic | 45.0% | |
| TGGACAAGACGCTACTAATG+TGG | + | chr6_3:74907243-74907262 | Msa0958830:CDS | 45.0% | |
| GGACAAGACGCTACTAATGT+GGG | + | chr6_3:74907244-74907263 | Msa0958830:CDS | 45.0% | |
| GCTACTAATGTGGGTGATGA+AGG | + | chr6_3:74907253-74907272 | Msa0958830:CDS | 45.0% | |
| ACTAATGTGGGTGATGAAGG+TGG | + | chr6_3:74907256-74907275 | Msa0958830:CDS | 45.0% | |
| ! | TGGCTTTGCTCCTAATATCC+AGG | + | chr6_3:74907276-74907295 | Msa0958830:CDS | 45.0% |
| ! | AGAAGAAGCATGTAAGGACC+TGG | - | chr6_3:74907297-74907316 | None:intergenic | 45.0% |
| AGGTCCTTACATGCTTCTTC+TGG | + | chr6_3:74907296-74907315 | Msa0958830:intron | 45.0% | |
| AAAACTGCCATTGCGAAAGC+TGG | + | chr6_3:74907585-74907604 | Msa0958830:CDS | 45.0% | |
| ATCCATTCGATCAGGATGAC+TGG | + | chr6_3:74907973-74907992 | Msa0958830:CDS | 45.0% | |
| TCCATTCGATCAGGATGACT+GGG | + | chr6_3:74907974-74907993 | Msa0958830:CDS | 45.0% | |
| !! | CTTCAACAAAAGGGCATTGC+AGG | - | chr6_3:74908202-74908221 | None:intergenic | 45.0% |
| ! | CTGCAATGCCCTTTTGTTGA+AGG | + | chr6_3:74908200-74908219 | Msa0958830:CDS | 45.0% |
| GTGAGAATGTCTAAGCAAGC+TGG | + | chr6_3:74908383-74908402 | Msa0958830:CDS | 45.0% | |
| AATGTCTAAGCAAGCTGGCT+GGG | + | chr6_3:74908388-74908407 | Msa0958830:CDS | 45.0% | |
| ! | TTCAAGCATCTTTGAGGGGA+GGG | - | chr6_3:74909319-74909338 | None:intergenic | 45.0% |
| ! | ATTCAAGCATCTTTGAGGGG+AGG | - | chr6_3:74909318-74909337 | None:intergenic | 45.0% |
| ! | ATTCAAGCATCTTTGAGGGG+AGG | + | chr6_3:74909318-74909337 | Msa0958830:intron | 45.0% |
| ! | TTCAAGCATCTTTGAGGGGA+GGG | + | chr6_3:74909319-74909338 | Msa0958830:intron | 45.0% |
| TAACAGGGTCAGATCAAGAC+GGG | + | chr6_3:74909471-74909490 | Msa0958830:intron | 45.0% | |
| !! | AAGGCTTGCTAAGTACAACC+AGG | + | chr6_3:74909512-74909531 | Msa0958830:CDS | 45.0% |
| ! | GAGATGCAGATAGCTCTATG+TGG | + | chr6_3:74909696-74909715 | Msa0958830:intron | 45.0% |
| GTTGCAGCTTCTTAGGATTG+AGG | + | chr6_3:74909758-74909777 | Msa0958830:intron | 45.0% | |
| CAAACTGCAGCAGTTTATGC+TGG | + | chr6_3:74909856-74909875 | Msa0958830:three_prime_UTR | 45.0% | |
| TTCTATTGTCGCTGACAGCA+CGG | + | chr6_3:74909942-74909961 | Msa0958830:three_prime_UTR | 45.0% | |
| !! | GAGGGCAATAGAGAAGTACT+TGG | + | chr6_3:74910077-74910096 | Msa0958830:intron | 45.0% |
| !!! | ATTATATTTAATATTTTCAT+CGG | + | chr6_3:74904631-74904650 | Msa0958830:intron | 5.0% |
| !! | AATAAAAAAAAAAATATTGA+GGG | - | chr6_3:74908787-74908806 | None:intergenic | 5.0% |
| !! | AAATAAAAAAAAAAATATTG+AGG | - | chr6_3:74908788-74908807 | None:intergenic | 5.0% |
| !!! | ACATATTTTAATTTTATTTT+GGG | - | chr6_3:74908973-74908992 | None:intergenic | 5.0% |
| !!! | AATGAATTAATTTTTTTAAA+TGG | + | chr6_3:74909111-74909130 | Msa0958830:intron | 5.0% |
| CTTCGACGGTTGGATTTCCA+CGG | - | chr6_3:74904443-74904462 | None:intergenic | 50.0% | |
| ACGAAACTCACTTCGACGGT+TGG | - | chr6_3:74904453-74904472 | None:intergenic | 50.0% | |
| TCTGTATCCGGTGTCTGTGT+CGG | + | chr6_3:74904664-74904683 | Msa0958830:intron | 50.0% | |
| GTTCCTAGTGGTGCTTCAAC+AGG | + | chr6_3:74904835-74904854 | Msa0958830:CDS | 50.0% | |
| GTCTTGCTTCATACACCCAC+CGG | + | chr6_3:74905193-74905212 | Msa0958830:intron | 50.0% | |
| ! | TAATAGTGACCGGAGGGTGT+AGG | + | chr6_3:74905327-74905346 | Msa0958830:intron | 50.0% |
| ACACAAAAGCCTACACCCTC+CGG | - | chr6_3:74905339-74905358 | None:intergenic | 50.0% | |
| TTGAATGTGCGTCCGACATG+TGG | + | chr6_3:74905604-74905623 | Msa0958830:intron | 50.0% | |
| !! | GAAGCTCTGGAATTGAGGGA+TGG | + | chr6_3:74906012-74906031 | Msa0958830:CDS | 50.0% |
| CCTTAAGAACACCTTTCCCG+AGG | - | chr6_3:74906050-74906069 | None:intergenic | 50.0% | |
| !! | CCTCGGGAAAGGTGTTCTTA+AGG | + | chr6_3:74906047-74906066 | Msa0958830:CDS | 50.0% |
| TCACTCGCTGTCTGTAAAGC+TGG | + | chr6_3:74906706-74906725 | Msa0958830:CDS | 50.0% | |
| TCCCCTGTACAAGGTATGTG+AGG | + | chr6_3:74906747-74906766 | Msa0958830:intron | 50.0% | |
| ATCAATGGAGGCTCACATGC+AGG | + | chr6_3:74906907-74906926 | Msa0958830:CDS | 50.0% | |
| TCCCAGTCATCCTGATCGAA+TGG | - | chr6_3:74907978-74907997 | None:intergenic | 50.0% | |
| GGTCAGCAAGTACAGATCGT+TGG | + | chr6_3:74908026-74908045 | Msa0958830:CDS | 50.0% | |
| GAATGTCTAAGCAAGCTGGC+TGG | + | chr6_3:74908387-74908406 | Msa0958830:CDS | 50.0% | |
| ATGTCTAAGCAAGCTGGCTG+GGG | + | chr6_3:74908389-74908408 | Msa0958830:CDS | 50.0% | |
| TGGACGTTCAATACCTTCGG+TGG | - | chr6_3:74908427-74908446 | None:intergenic | 50.0% | |
| ! | TCAAGCATCTTTGAGGGGAG+GGG | - | chr6_3:74909320-74909339 | None:intergenic | 50.0% |
| ! | TCAAGCATCTTTGAGGGGAG+GGG | + | chr6_3:74909320-74909339 | Msa0958830:intron | 50.0% |
| GCAAGCCTTTCAGATCTGCA+GGG | - | chr6_3:74909501-74909520 | None:intergenic | 50.0% | |
| AGCAAGCCTTTCAGATCTGC+AGG | - | chr6_3:74909502-74909521 | None:intergenic | 50.0% | |
| AGCTGCAACGCAGATCAAAG+AGG | - | chr6_3:74909747-74909766 | None:intergenic | 50.0% | |
| GATCTGCGTTGCAGCTTCTT+AGG | + | chr6_3:74909751-74909770 | Msa0958830:intron | 50.0% | |
| GCAGCTTCTTAGGATTGAGG+AGG | + | chr6_3:74909761-74909780 | Msa0958830:intron | 50.0% | |
| CTTAGGATTGAGGAGGAGCT+TGG | + | chr6_3:74909768-74909787 | Msa0958830:CDS | 50.0% | |
| TGGTTCCAAATTCAGGGCTC+CGG | + | chr6_3:74909809-74909828 | Msa0958830:CDS | 50.0% | |
| TGGTTCCAAACTCAGAGCCT+TGG | + | chr6_3:74909876-74909895 | Msa0958830:three_prime_UTR | 50.0% | |
| TTCCAAACTCAGAGCCTTGG+TGG | + | chr6_3:74909879-74909898 | Msa0958830:three_prime_UTR | 50.0% | |
| TCTATTGTCGCTGACAGCAC+GGG | + | chr6_3:74909943-74909962 | Msa0958830:three_prime_UTR | 50.0% | |
| CGTCAGATCTTCGATAGCCG+TGG | + | chr6_3:74904423-74904442 | Msa0958830:CDS | 55.0% | |
| !! | GGCGTCGATGTGTCTGTATC+CGG | + | chr6_3:74904652-74904671 | Msa0958830:intron | 55.0% |
| !! | TGAAGCACCGACACAGACAC+CGG | - | chr6_3:74904674-74904693 | None:intergenic | 55.0% |
| GCTAGAGCTGCTGTTCCTAG+TGG | + | chr6_3:74904823-74904842 | Msa0958830:CDS | 55.0% | |
| !! | GCTCTGGAATTGAGGGATGG+AGG | + | chr6_3:74906015-74906034 | Msa0958830:CDS | 55.0% |
| GATGGAGGCTCAGACTACCT+CGG | + | chr6_3:74906030-74906049 | Msa0958830:CDS | 55.0% | |
| ATGGAGGCTCAGACTACCTC+GGG | + | chr6_3:74906031-74906050 | Msa0958830:CDS | 55.0% | |
| AGCACCTGCACTTCTTGGCA+AGG | + | chr6_3:74906353-74906372 | Msa0958830:CDS | 55.0% | |
| GAGCTCCCTGCAGATCTGAA+AGG | + | chr6_3:74909493-74909512 | Msa0958830:CDS | 55.0% | |
| CTCAACCGGAGCCCTGAATT+TGG | - | chr6_3:74909817-74909836 | None:intergenic | 55.0% | |
| !! | CTCCACCAAGGCTCTGAGTT+TGG | - | chr6_3:74909884-74909903 | None:intergenic | 55.0% |
| GGCTCAGACTACCTCGGGAA+AGG | + | chr6_3:74906036-74906055 | Msa0958830:CDS | 60.0% | |
| GTGGGGATGGTGCAAGCAGA+AGG | + | chr6_3:74906541-74906560 | Msa0958830:CDS | 60.0% | |
| ! | GTGTCATGGCTAGCCACCGA+AGG | + | chr6_3:74908411-74908430 | Msa0958830:CDS | 60.0% |
| ! | GGTGCTGCAGCAGTCTATGC+TGG | + | chr6_3:74909789-74909808 | Msa0958830:CDS | 60.0% |
| ! | GCAAGCTGGCTGGGGTGTCA+TGG | + | chr6_3:74908397-74908416 | Msa0958830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 74904262 | 74910350 | 74904262 | ID=Msa0958830;Name=Msa0958830 |
| chr6_3 | mRNA | 74904262 | 74910350 | 74904262 | ID=Msa0958830-mRNA-1;Parent=Msa0958830;Name=Msa0958830-mRNA-1;_AED=0.11;_eAED=0.11;_QI=131|1|1|1|0.94|0.88|18|451|446 |
| chr6_3 | exon | 74904262 | 74904461 | 74904262 | ID=Msa0958830-mRNA-1:exon:13366;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74904793 | 74904856 | 74904793 | ID=Msa0958830-mRNA-1:exon:13367;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74906004 | 74906068 | 74906004 | ID=Msa0958830-mRNA-1:exon:13368;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74906327 | 74906374 | 74906327 | ID=Msa0958830-mRNA-1:exon:13369;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74906476 | 74906562 | 74906476 | ID=Msa0958830-mRNA-1:exon:13370;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74906679 | 74906759 | 74906679 | ID=Msa0958830-mRNA-1:exon:13371;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74906847 | 74906948 | 74906847 | ID=Msa0958830-mRNA-1:exon:13372;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74907036 | 74907116 | 74907036 | ID=Msa0958830-mRNA-1:exon:13373;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74907223 | 74907297 | 74907223 | ID=Msa0958830-mRNA-1:exon:13374;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74907558 | 74907620 | 74907558 | ID=Msa0958830-mRNA-1:exon:13375;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74907694 | 74907774 | 74907694 | ID=Msa0958830-mRNA-1:exon:13376;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74907882 | 74908076 | 74907882 | ID=Msa0958830-mRNA-1:exon:13377;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74908171 | 74908221 | 74908171 | ID=Msa0958830-mRNA-1:exon:13378;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74908344 | 74908432 | 74908344 | ID=Msa0958830-mRNA-1:exon:13379;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74908525 | 74908576 | 74908525 | ID=Msa0958830-mRNA-1:exon:13380;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74909477 | 74909533 | 74909477 | ID=Msa0958830-mRNA-1:exon:13381;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74909765 | 74910080 | 74909765 | ID=Msa0958830-mRNA-1:exon:13382;Parent=Msa0958830-mRNA-1 |
| chr6_3 | exon | 74910135 | 74910350 | 74910135 | ID=Msa0958830-mRNA-1:exon:13383;Parent=Msa0958830-mRNA-1 |
| chr6_3 | five_prime_UTR | 74904262 | 74904392 | 74904262 | ID=Msa0958830-mRNA-1:five_prime_utr;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74904393 | 74904461 | 74904393 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74904793 | 74904856 | 74904793 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74906004 | 74906068 | 74906004 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74906327 | 74906374 | 74906327 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74906476 | 74906562 | 74906476 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74906679 | 74906759 | 74906679 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74906847 | 74906948 | 74906847 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74907036 | 74907116 | 74907036 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74907223 | 74907297 | 74907223 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74907558 | 74907620 | 74907558 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74907694 | 74907774 | 74907694 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74907882 | 74908076 | 74907882 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74908171 | 74908221 | 74908171 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74908344 | 74908432 | 74908344 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74908525 | 74908576 | 74908525 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74909477 | 74909533 | 74909477 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | CDS | 74909765 | 74909845 | 74909765 | ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1 |
| chr6_3 | three_prime_UTR | 74909846 | 74910080 | 74909846 | ID=Msa0958830-mRNA-1:three_prime_utr;Parent=Msa0958830-mRNA-1 |
| chr6_3 | three_prime_UTR | 74910135 | 74910350 | 74910135 | ID=Msa0958830-mRNA-1:three_prime_utr;Parent=Msa0958830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
