AlfalfaGEDB | Msa0958830

M. sativa cultivar zhongmu-4 / Msa0958830

KEGG: K01689
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF03952.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958830	XP_024642075.2	99.552	446	2	0	1	446	1	446	0.0	913

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958830	sp\|Q42971\|ENO_ORYSJ	90.583	446	42	0	1	446	1	446	0.0	844

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007810	Msa0958830	-0.809053	2.287654e-50	-8.615850e-47
Msa0021400	Msa0958830	0.855504	6.035429e-62	-8.615850e-47
Msa0026250	Msa0958830	0.820553	6.456251e-53	-8.615850e-47
Msa0029700	Msa0958830	0.824772	6.736021e-54	-8.615850e-47
Msa0035740	Msa0958830	0.852402	4.728068e-61	-8.615850e-47
Msa0038150	Msa0958830	-0.801658	8.115998e-49	-8.615850e-47
Msa0039750	Msa0958830	0.823374	1.433997e-53	-8.615850e-47
Msa0042950	Msa0958830	-0.804679	1.923692e-49	-8.615850e-47
Msa0056230	Msa0958830	-0.811440	6.993339e-51	-8.615850e-47
Msa0064960	Msa0958830	0.819187	1.324816e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958830	MtrunA17_Chr6g0476311	99.552	446	2	0	1	446	1	446	0.0	913
Msa0958830	MtrunA17_Chr7g0265741	88.090	445	52	1	2	446	1	444	0.0	817
Msa0958830	MtrunA17_Chr2g0307671	68.409	440	126	8	4	442	64	491	0.0	600
Msa0958830	MtrunA17_Chr5g0447311	58.879	214	84	3	227	440	19	228	7.61e-84	257
Msa0958830	MtrunA17_Chr5g0447301	60.360	222	80	4	5	225	47	261	3.71e-83	257

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958830	AT2G36530.1	85.618	445	63	1	2	446	1	444	0.0	794
Msa0958830	AT2G36530.2	85.816	423	59	1	24	446	12	433	0.0	755
Msa0958830	AT1G74030.1	68.565	439	125	7	5	442	51	477	0.0	603
Msa0958830	AT2G29560.1	58.352	437	170	7	5	440	47	472	1.00e-174	498

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Find 141 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCCATTGCGAAAGC+TGG	0.492614	6_3:+74907585	Msa0958830:CDS
AAACACGAAACTCACTTCGA+CGG	0.663189	6_3:-74904454	None:intergenic
AAACTATTCTCTTATACAGA+CGG	0.587272	6_3:-74909996	None:intergenic
AAAGTTTGGCATTGTATGGT+AGG	0.453663	6_3:+74910317	Msa0958830:three_prime_UTR
AAATATCAATAGGGCTCAAC+CGG	0.439901	6_3:-74909828	None:intergenic
AACATACGACTTGAATTTCA+AGG	0.411115	6_3:+74907747	Msa0958830:CDS
AACCTCACATACCTTGTACA+GGG	0.626562	6_3:-74906749	None:intergenic
AACTGAGAGATCAGCAATGA+AGG	0.515032	6_3:-74908542	None:intergenic
AAGGCTTGCTAAGTACAACC+AGG	0.680165	6_3:+74909512	Msa0958830:CDS
AAGTTTGGCATTGTATGGTA+GGG	0.508921	6_3:+74910318	Msa0958830:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCTAATCGAATAAGTGT+CGG	+	chr6_3:74904591-74904610	Msa0958830:intron	30.0%
GAAATGAATGTTGAACTTGA+AGG	+	chr6_3:74905513-74905532	Msa0958830:intron	30.0%
ATATGACTGGTGTACTATAT+AGG	+	chr6_3:74905564-74905583	Msa0958830:intron	30.0%
AGTAAGTTATTGCTTATGGA+TGG	+	chr6_3:74905703-74905722	Msa0958830:intron	30.0%
TGTTATCTGTGTTTACATAC+AGG	+	chr6_3:74906454-74906473	Msa0958830:intron	30.0%
AGCTGAAAATTACAAGATTG+TGG	-	chr6_3:74906661-74906680	None:intergenic	30.0%
TAGTAACGATAGTTTCTATC+TGG	+	chr6_3:74906773-74906792	Msa0958830:intron	30.0%
CCTTCATTCAATGTTATCAA+TGG	+	chr6_3:74906892-74906911	Msa0958830:CDS	30.0%
TCATTCAATGTTATCAATGG+AGG	+	chr6_3:74906895-74906914	Msa0958830:CDS	30.0%
GCCTCTTATATAGGAATTTA+TGG	+	chr6_3:74907023-74907042	Msa0958830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	74904262	74910350	74904262	ID=Msa0958830;Name=Msa0958830
chr6_3	mRNA	74904262	74910350	74904262	ID=Msa0958830-mRNA-1;Parent=Msa0958830;Name=Msa0958830-mRNA-1;_AED=0.11;_eAED=0.11;_QI=131\|1\|1\|1\|0.94\|0.88\|18\|451\|446
chr6_3	exon	74904262	74904461	74904262	ID=Msa0958830-mRNA-1:exon:13366;Parent=Msa0958830-mRNA-1
chr6_3	exon	74904793	74904856	74904793	ID=Msa0958830-mRNA-1:exon:13367;Parent=Msa0958830-mRNA-1
chr6_3	exon	74906004	74906068	74906004	ID=Msa0958830-mRNA-1:exon:13368;Parent=Msa0958830-mRNA-1
chr6_3	exon	74906327	74906374	74906327	ID=Msa0958830-mRNA-1:exon:13369;Parent=Msa0958830-mRNA-1
chr6_3	exon	74906476	74906562	74906476	ID=Msa0958830-mRNA-1:exon:13370;Parent=Msa0958830-mRNA-1
chr6_3	exon	74906679	74906759	74906679	ID=Msa0958830-mRNA-1:exon:13371;Parent=Msa0958830-mRNA-1
chr6_3	exon	74906847	74906948	74906847	ID=Msa0958830-mRNA-1:exon:13372;Parent=Msa0958830-mRNA-1
chr6_3	exon	74907036	74907116	74907036	ID=Msa0958830-mRNA-1:exon:13373;Parent=Msa0958830-mRNA-1
chr6_3	exon	74907223	74907297	74907223	ID=Msa0958830-mRNA-1:exon:13374;Parent=Msa0958830-mRNA-1
chr6_3	exon	74907558	74907620	74907558	ID=Msa0958830-mRNA-1:exon:13375;Parent=Msa0958830-mRNA-1
chr6_3	exon	74907694	74907774	74907694	ID=Msa0958830-mRNA-1:exon:13376;Parent=Msa0958830-mRNA-1
chr6_3	exon	74907882	74908076	74907882	ID=Msa0958830-mRNA-1:exon:13377;Parent=Msa0958830-mRNA-1
chr6_3	exon	74908171	74908221	74908171	ID=Msa0958830-mRNA-1:exon:13378;Parent=Msa0958830-mRNA-1
chr6_3	exon	74908344	74908432	74908344	ID=Msa0958830-mRNA-1:exon:13379;Parent=Msa0958830-mRNA-1
chr6_3	exon	74908525	74908576	74908525	ID=Msa0958830-mRNA-1:exon:13380;Parent=Msa0958830-mRNA-1
chr6_3	exon	74909477	74909533	74909477	ID=Msa0958830-mRNA-1:exon:13381;Parent=Msa0958830-mRNA-1
chr6_3	exon	74909765	74910080	74909765	ID=Msa0958830-mRNA-1:exon:13382;Parent=Msa0958830-mRNA-1
chr6_3	exon	74910135	74910350	74910135	ID=Msa0958830-mRNA-1:exon:13383;Parent=Msa0958830-mRNA-1
chr6_3	five_prime_UTR	74904262	74904392	74904262	ID=Msa0958830-mRNA-1:five_prime_utr;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74904393	74904461	74904393	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74904793	74904856	74904793	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74906004	74906068	74906004	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74906327	74906374	74906327	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74906476	74906562	74906476	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74906679	74906759	74906679	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74906847	74906948	74906847	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74907036	74907116	74907036	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74907223	74907297	74907223	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74907558	74907620	74907558	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74907694	74907774	74907694	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74907882	74908076	74907882	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74908171	74908221	74908171	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74908344	74908432	74908344	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74908525	74908576	74908525	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74909477	74909533	74909477	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	CDS	74909765	74909845	74909765	ID=Msa0958830-mRNA-1:cds;Parent=Msa0958830-mRNA-1
chr6_3	three_prime_UTR	74909846	74910080	74909846	ID=Msa0958830-mRNA-1:three_prime_utr;Parent=Msa0958830-mRNA-1
chr6_3	three_prime_UTR	74910135	74910350	74910135	ID=Msa0958830-mRNA-1:three_prime_utr;Parent=Msa0958830-mRNA-1

Gene Sequence

>Msa0958830

ATGGTGGTTACGATCAAGATTGTTAAAGCTCGTCAGATCTTCGATAGCCGTGGAAATCCAACCGTCGAAGTTGATGTTACTCTTAGTGATGGAACATTTGCTAGAGCTGCTGTTCCTAGTGGTGCTTCAACAGGTGTCTATGAAGCTCTGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGGCTGTCGAGAATGTGAATTCAATTATAGCACCTGCACTTCTTGGCAAGGACCCAACCAAGCAGACTGAAATCGACAATTTTATGGTACAGCAGCTTGATGGAACTGTTAATGAGTGGGGATGGTGCAAGCAGAAGCTTGGAGCCAATGCTATTTTGGCCGTGTCACTCGCTGTCTGTAAAGCTGGTGCTTTAGCTAAGAAAATTCCCCTGTACAAGCATATTGCAAATCTAGCTGGGAACAAGACTTTGGTATTGCCTGTACCTTCATTCAATGTTATCAATGGAGGCTCACATGCAGGAAATAAGCTTGCAATGCAGGAATTTATGGTTCTCCCTGTTGGGGCATCTTCTTTCAAAGAAGCAATGAAGATGGGTGTAGAAGTATACCATCATCTAAAGGCTGTGATTAAAAAGAAGTATGGACAAGACGCTACTAATGTGGGTGATGAAGGTGGCTTTGCTCCTAATATCCAGGAAAACAAAGAAGGACTTGAGCTTCTGAAAACTGCCATTGCGAAAGCTGGTTATACTGGAAAGGTTGTAATTGGGATGGATGTTGCTGCTTCAGAATTTTATGATAACAAGGGCAAAACATACGACTTGAATTTCAAGGAAGAGAATAATGATGGATCAGAGAAAATCTCAGGAGACAGCTTAAAGAACGTGTACAAGTCATTTGTGTCAGACTACCCAATTGTCTCAATTGAGGATCCATTCGATCAGGATGACTGGGAGCACTATGCAAAATTAACAGCTGAAATGGGTCAGCAAGTACAGATCGTTGGTGATGATCTCCTTGTTACTAACCCAAAGCGTGTGGAAAAAGCAATTAAAGAGAAGTCCTGCAATGCCCTTTTGTTGAAGGTGAATCAAATTGGTAGTGTAACTGAAAGTATTGAAGCTGTGAGAATGTCTAAGCAAGCTGGCTGGGGTGTCATGGCTAGCCACCGAAGTGGTGAAACTGAGGATACCTTCATTGCTGATCTCTCAGTTGGGCTAGCAACAGGTCAGATCAAGACGGGAGCTCCCTGCAGATCTGAAAGGCTTGCTAAGTACAACCAGCTTCTTAGGATTGAGGAGGAGCTTGGTGCTGCAGCAGTCTATGCTGGTTCCAAATTCAGGGCTCCGGTTGAGCCCTATTGA

Protein sequence

>Msa0958830

MVVTIKIVKARQIFDSRGNPTVEVDVTLSDGTFARAAVPSGASTGVYEALELRDGGSDYLGKGVLKAVENVNSIIAPALLGKDPTKQTEIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGALAKKIPLYKHIANLAGNKTLVLPVPSFNVINGGSHAGNKLAMQEFMVLPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYDNKGKTYDLNFKEENNDGSEKISGDSLKNVYKSFVSDYPIVSIEDPFDQDDWEHYAKLTAEMGQQVQIVGDDLLVTNPKRVEKAIKEKSCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAAAVYAGSKFRAPVEPY*