AlfalfaGEDB | Msa0516970

M. sativa cultivar zhongmu-4 / Msa0516970

KEGG: -
GO: -
PFAM: PF03372.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516970	KEH35493.1	98.684	456	6	0	1	456	1	456	0.0	943

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516970	sp\|O81916\|YC22_ARATH	59.584	433	164	4	21	452	62	484	0.0	540

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516970	A0A072V2B6	98.684	456	6	0	1	456	1	456	0.0	943

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021400	Msa0516970	0.802462	5.546278e-49	-8.615850e-47
Msa0130360	Msa0516970	0.810274	1.250535e-50	-8.615850e-47
Msa0258910	Msa0516970	0.809097	2.238938e-50	-8.615850e-47
Msa0426080	Msa0516970	0.930290	2.030276e-93	-8.615850e-47
Msa0426240	Msa0516970	0.975118	2.271132e-139	-8.615850e-47
Msa0516970	Msa0685610	0.800453	1.431292e-48	-8.615850e-47
Msa0516970	Msa0921860	0.827259	1.726888e-54	-8.615850e-47
Msa0516970	Msa0958830	0.830670	2.577559e-55	-8.615850e-47
Msa0516970	Msa0970040	0.802335	5.891662e-49	-8.615850e-47
Msa0516970	Msa1111910	0.815403	9.410497e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516970	MtrunA17_Chr3g0128181	97.807	456	6	1	1	456	26	477	0.0	928
Msa0516970	MtrunA17_Chr5g0428931	77.262	431	88	3	29	453	16	442	0.0	664
Msa0516970	MtrunA17_Chr8g0345661	64.235	425	144	3	34	454	46	466	0.0	546
Msa0516970	MtrunA17_Chr7g0271431	91.837	49	4	0	307	355	22	70	3.76e-25	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0516970	AT5G54130.2	74.497	447	98	6	11	455	3	435	0.0	683
Msa0516970	AT1G02270.1	59.584	433	164	4	21	452	62	484	0.0	540
Msa0516970	AT5G54130.4	75.000	336	75	4	11	345	3	330	0.0	526
Msa0516970	AT5G54130.3	74.405	336	75	5	11	345	3	328	0.0	517
Msa0516970	AT1G02270.2	58.757	354	140	3	100	452	1	349	7.44e-152	436

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Find 93 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATGGGAAGGATTTCA+AGG	0.474928	3_4:-68495872	Msa0516970:CDS
AAAGTGGTGCAAGTAATGCA+AGG	0.633549	3_4:+68495798	None:intergenic
AAGAATAAGGAGCAGGAAGA+TGG	0.483958	3_4:-68493114	Msa0516970:CDS
AAGAGACGACAACAAGAATA+AGG	0.370878	3_4:-68493127	Msa0516970:CDS
AAGTCGAGCATGATCAGAAA+GGG	0.528485	3_4:+68492993	None:intergenic
AATGGCGAAACGGTGAAATT+AGG	0.348821	3_4:-68494863	Msa0516970:CDS
AATTACCCGCATAGCATGAT+TGG	0.373854	3_4:+68494629	None:intergenic
AATTTGTATGAAAAGAGACT+TGG	0.556763	3_4:-68495409	Msa0516970:CDS
ACAGTTTATTTCTCAGTGAC+TGG	0.438180	3_4:-68494542	Msa0516970:intron
AGAGATAGCGTTGCATCGTG+AGG	0.646885	3_4:+68494804	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTGATGCGTTTGTAAAT+AGG	+	chr3_4:68493109-68493128	None:intergenic	30.0%
GGAATCATAGGATATTAGAT+TGG	-	chr3_4:68493270-68493289	Msa0516970:intron	30.0%
GTCTTCTATTATTTGTCTTC+AGG	-	chr3_4:68493307-68493326	Msa0516970:intron	30.0%
TACATTTCTATTATTGGCCA+AGG	-	chr3_4:68493377-68493396	Msa0516970:intron	30.0%
ACATTTCTATTATTGGCCAA+GGG	-	chr3_4:68493378-68493397	Msa0516970:intron	30.0%
CTAATGTGTTGAATTTGTGA+AGG	-	chr3_4:68493407-68493426	Msa0516970:intron	30.0%
ATGAATTTGTGACAACCAAA+GGG	+	chr3_4:68493572-68493591	None:intergenic	30.0%
TATTACAAATCCATAACGTC+CGG	+	chr3_4:68493619-68493638	None:intergenic	30.0%
ATGTATTAAATTGGGCAAAG+GGG	-	chr3_4:68493639-68493658	Msa0516970:intron	30.0%
TTATATGTCAAGGGTTACAT+TGG	+	chr3_4:68493756-68493775	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	68492942	68495948	68492942	ID=Msa0516970;Name=Msa0516970
chr3_4	mRNA	68492942	68495948	68492942	ID=Msa0516970-mRNA-1;Parent=Msa0516970;Name=Msa0516970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=32\|0.77\|0.5\|1\|1\|1\|10\|0\|456
chr3_4	exon	68492942	68493181	68492942	ID=Msa0516970-mRNA-1:exon:18122;Parent=Msa0516970-mRNA-1
chr3_4	exon	68493706	68493813	68493706	ID=Msa0516970-mRNA-1:exon:18121;Parent=Msa0516970-mRNA-1
chr3_4	exon	68493928	68494035	68493928	ID=Msa0516970-mRNA-1:exon:18120;Parent=Msa0516970-mRNA-1
chr3_4	exon	68494225	68494350	68494225	ID=Msa0516970-mRNA-1:exon:18119;Parent=Msa0516970-mRNA-1
chr3_4	exon	68494440	68494560	68494440	ID=Msa0516970-mRNA-1:exon:18118;Parent=Msa0516970-mRNA-1
chr3_4	exon	68494635	68494711	68494635	ID=Msa0516970-mRNA-1:exon:18117;Parent=Msa0516970-mRNA-1
chr3_4	exon	68494788	68495008	68494788	ID=Msa0516970-mRNA-1:exon:18116;Parent=Msa0516970-mRNA-1
chr3_4	exon	68495356	68495461	68495356	ID=Msa0516970-mRNA-1:exon:18115;Parent=Msa0516970-mRNA-1
chr3_4	exon	68495562	68495666	68495562	ID=Msa0516970-mRNA-1:exon:18114;Parent=Msa0516970-mRNA-1
chr3_4	exon	68495758	68495948	68495758	ID=Msa0516970-mRNA-1:exon:18113;Parent=Msa0516970-mRNA-1
chr3_4	five_prime_UTR	68495917	68495948	68495917	ID=Msa0516970-mRNA-1:five_prime_utr;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68495758	68495916	68495758	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68495562	68495666	68495562	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68495356	68495461	68495356	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68494788	68495008	68494788	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68494635	68494711	68494635	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68494440	68494560	68494440	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68494225	68494350	68494225	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68493928	68494035	68493928	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68493706	68493813	68493706	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1
chr3_4	CDS	68492942	68493181	68492942	ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1

Gene Sequence

>Msa0516970

ATGAGAACGGGTAAGTGGGCAAAAAGCATGGGAAGGATTTCAAGGATTGGAAGTTTTGCAATTGCTTCTTCCTTAAACGATACTAATCCACCACAACCTTGCATTACTTGCACCACTTTTAACATTCTTGCTCCTATTTACAAACGCATCAATGATGAGGACCCAACTTGTCGAGAGAGTGACTATAGAGCATATTGGTTGGCAAGGAATCATAGGATATTAGATTGGCTTTTGAATGAAAAGTCTTCTATTATTTGTCTTCAGGAGTTTTGGGTAGGAAATGAAGAGCTCGTTAATTTGTATGAAAAGAGACTTGGAGATGCTGGTTATGTTAGTTTCAAACTTGGAAGGACGAACAACCGTGGAGATGGTCTTTTAATAGCAGTGCAAACGGAATACTTTAACATTTTCAATTATAAGGAGTTGCACTTCAACGATATTGGTGATCGTGTAGCTCAACTGTTACATGTTGAACTAGTCTTTCCATTTTCAAAATGGCGAAACGGTGAAATTAGGCAGGAAATTCTTATTGTTAACACCCACCTTCTATTTCCTCACGATGCAACGCTATCTCTTGTACGATTGAAACAGGTCTATAAGATACTTCAATATGTAGAATCTTATCAAAATGACTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTTTATTTCTCAGTGACTGGAATGGAAGCAAGCGTGGACATGTTTACAAATTCCTGAGGTCCCAGGGTTTTGTATCGTCTTACGATACTGCACATCAATACACTGATGCAGATGCTGACAAGTGGGTTAGTCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAATTACTAAAAGCAAGTTGGAGTGAAGCAGTATTTGGCATGTTCAAGGATCTAGTGAGACGAGCTTCACTGACAGAAAGTGATGCATTCGCATTTCTAAGGGCCGAGAATGAAGATTGTATTACGTATTCTGGTTTCTGTGAAGCACTTCGACAGCTCAATTTAATTGGTCATTCTCATGAGTTGAGTGAGGAAGAGATAAAGGAGTTGTGGGTCCAAGCTGACATAGATGGAAATGGTGTTCTTGACTATAAAGAATTTCTGCAGCAAATATGGATTTCAACTGTTTTAGATCAAAGAGACGACAACAAGAATAAGGAGCAGGAAGATGGTTCAAATGACGTTCAAGAACAAACAATTGGTTTTAGTGTAAAAAATGCAGTTTTGTTCCCTCCTGAGGTGGAGAAAGGTAGATGGCCGGAAGACTACTCCCTTTCTGATCATGCTCGACTTACTGTTGTGTTTTCACCGATAAGAATGCCGTGCTCCCAGATGATTTGCTGA

Protein sequence

>Msa0516970

MRTGKWAKSMGRISRIGSFAIASSLNDTNPPQPCITCTTFNILAPIYKRINDEDPTCRESDYRAYWLARNHRILDWLLNEKSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQTEYFNIFNYKELHFNDIGDRVAQLLHVELVFPFSKWRNGEIRQEILIVNTHLLFPHDATLSLVRLKQVYKILQYVESYQNDFQLKPMPIMLCGLFLSDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKDLVRRASLTESDAFAFLRAENEDCITYSGFCEALRQLNLIGHSHELSEEEIKELWVQADIDGNGVLDYKEFLQQIWISTVLDQRDDNKNKEQEDGSNDVQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQMIC*