Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516970 | KEH35493.1 | 98.684 | 456 | 6 | 0 | 1 | 456 | 1 | 456 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516970 | sp|O81916|YC22_ARATH | 59.584 | 433 | 164 | 4 | 21 | 452 | 62 | 484 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516970 | A0A072V2B6 | 98.684 | 456 | 6 | 0 | 1 | 456 | 1 | 456 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa0516970 | 0.802462 | 5.546278e-49 | -8.615850e-47 |
| Msa0130360 | Msa0516970 | 0.810274 | 1.250535e-50 | -8.615850e-47 |
| Msa0426080 | Msa0516970 | 0.930290 | 2.030276e-93 | -8.615850e-47 |
| Msa0426240 | Msa0516970 | 0.975118 | 2.271132e-139 | -8.615850e-47 |
| Msa0258910 | Msa0516970 | 0.809097 | 2.238938e-50 | -8.615850e-47 |
| Msa0516970 | Msa0685610 | 0.800453 | 1.431292e-48 | -8.615850e-47 |
| Msa0516970 | Msa0921860 | 0.827259 | 1.726888e-54 | -8.615850e-47 |
| Msa0516970 | Msa0958830 | 0.830670 | 2.577559e-55 | -8.615850e-47 |
| Msa0516970 | Msa0970040 | 0.802335 | 5.891662e-49 | -8.615850e-47 |
| Msa0516970 | Msa1111910 | 0.815403 | 9.410497e-52 | -8.615850e-47 |
| Msa0516970 | Msa1154320 | 0.802346 | 5.859328e-49 | -8.615850e-47 |
| Msa0516970 | Msa1204870 | -0.803243 | 3.826518e-49 | -8.615850e-47 |
| Msa0516970 | Msa1434300 | 0.825896 | 3.650926e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516970 | MtrunA17_Chr3g0128181 | 97.807 | 456 | 6 | 1 | 1 | 456 | 26 | 477 | 0.0 | 928 |
| Msa0516970 | MtrunA17_Chr5g0428931 | 77.262 | 431 | 88 | 3 | 29 | 453 | 16 | 442 | 0.0 | 664 |
| Msa0516970 | MtrunA17_Chr8g0345661 | 64.235 | 425 | 144 | 3 | 34 | 454 | 46 | 466 | 0.0 | 546 |
| Msa0516970 | MtrunA17_Chr7g0271431 | 91.837 | 49 | 4 | 0 | 307 | 355 | 22 | 70 | 3.76e-25 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516970 | AT5G54130.2 | 74.497 | 447 | 98 | 6 | 11 | 455 | 3 | 435 | 0.0 | 683 |
| Msa0516970 | AT1G02270.1 | 59.584 | 433 | 164 | 4 | 21 | 452 | 62 | 484 | 0.0 | 540 |
| Msa0516970 | AT5G54130.4 | 75.000 | 336 | 75 | 4 | 11 | 345 | 3 | 330 | 0.0 | 526 |
| Msa0516970 | AT5G54130.3 | 74.405 | 336 | 75 | 5 | 11 | 345 | 3 | 328 | 0.0 | 517 |
| Msa0516970 | AT1G02270.2 | 58.757 | 354 | 140 | 3 | 100 | 452 | 1 | 349 | 7.44e-152 | 436 |
Find 93 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGACTATAAAGAATTTC+TGG | 0.149480 | 3_4:-68493705 | Msa0516970:intron |
| GAAGATTGTATTACGTATTC+TGG | 0.231159 | 3_4:-68493950 | Msa0516970:CDS |
| TGGTGGATTAGTATCGTTTA+AGG | 0.241206 | 3_4:+68495824 | None:intergenic |
| CGTGGTTGCAGCAGCAAATA+TGG | 0.248857 | 3_4:-68493170 | Msa0516970:intron |
| TCATTGATGCGTTTGTAAAT+AGG | 0.260373 | 3_4:+68495762 | None:intergenic |
| TCTTTGCAGCTCAATTTAAT+TGG | 0.269178 | 3_4:-68493800 | Msa0516970:intron |
| TTGAATTTGTGAAGGAGTTT+TGG | 0.271683 | 3_4:-68495453 | Msa0516970:intron |
| AGTTGGAGTGAAGCAGTATT+TGG | 0.273393 | 3_4:-68494235 | Msa0516970:CDS |
| GTCTTCTATTATTTGTCTTC+AGG | 0.288609 | 3_4:-68495561 | Msa0516970:intron |
| GTGATGCATTCGCATTTCTA+AGG | 0.292926 | 3_4:-68493982 | Msa0516970:CDS |
| GTTGAGTGAGGAAGAGATAA+AGG | 0.304033 | 3_4:-68493765 | Msa0516970:CDS |
| AATGGCGAAACGGTGAAATT+AGG | 0.348821 | 3_4:-68494863 | Msa0516970:CDS |
| AAGAGACGACAACAAGAATA+AGG | 0.370878 | 3_4:-68493127 | Msa0516970:CDS |
| AATTACCCGCATAGCATGAT+TGG | 0.373854 | 3_4:+68494629 | None:intergenic |
| GAGTTGCACTTCAACGATAT+TGG | 0.376186 | 3_4:-68494936 | Msa0516970:CDS |
| GACGTTCAAGAACAAACAAT+TGG | 0.391637 | 3_4:-68493084 | Msa0516970:CDS |
| TGGGAGCACGGCATTCTTAT+CGG | 0.397622 | 3_4:+68492955 | None:intergenic |
| CATTGTGTCAGCAAATCATC+TGG | 0.415046 | 3_4:+68492935 | None:intergenic |
| CGTAATACAATCTTCATTCT+CGG | 0.415852 | 3_4:+68493958 | None:intergenic |
| ATTGGTTGGCAAGGAATCAT+AGG | 0.425259 | 3_4:-68495610 | Msa0516970:CDS |
| GGTTAGTCACCGCAATCATC+GGG | 0.427328 | 3_4:-68494326 | Msa0516970:CDS |
| ACAGTTTATTTCTCAGTGAC+TGG | 0.438180 | 3_4:-68494542 | Msa0516970:intron |
| ATCTCTTGTACGATTGAAAC+AGG | 0.442832 | 3_4:-68494787 | Msa0516970:intron |
| TTCCCTCCTGAGGTGGAGAA+AGG | 0.462650 | 3_4:-68493036 | Msa0516970:CDS |
| CCGCATAGCATGATTGGCAT+TGG | 0.463891 | 3_4:+68494635 | None:intergenic |
| TCAGAAAGGGAGTAGTCTTC+CGG | 0.466059 | 3_4:+68493006 | None:intergenic |
| AGGAAGAGATAAAGGAGTTG+TGG | 0.467760 | 3_4:-68493757 | Msa0516970:CDS |
| AAAGCATGGGAAGGATTTCA+AGG | 0.474928 | 3_4:-68495872 | Msa0516970:CDS |
| GGAATCATAGGATATTAGAT+TGG | 0.479153 | 3_4:-68495598 | Msa0516970:CDS |
| AGCAGTATTTGGCATGTTCA+AGG | 0.480053 | 3_4:-68494224 | Msa0516970:intron |
| AAGAATAAGGAGCAGGAAGA+TGG | 0.483958 | 3_4:-68493114 | Msa0516970:CDS |
| GGGTTAGTCACCGCAATCAT+CGG | 0.484438 | 3_4:-68494327 | Msa0516970:CDS |
| CAAGCTGACATAGATGGAAA+TGG | 0.487916 | 3_4:-68493731 | Msa0516970:CDS |
| AGTCACTCTCTCGACAAGTT+GGG | 0.491261 | 3_4:+68495642 | None:intergenic |
| CTGAGGTGGAGAAAGGTAGA+TGG | 0.494182 | 3_4:-68493029 | Msa0516970:CDS |
| GAAAATTACTAAAAGCAAGT+TGG | 0.494595 | 3_4:-68494252 | Msa0516970:CDS |
| CATCTACCTTTCTCCACCTC+AGG | 0.495969 | 3_4:+68493030 | None:intergenic |
| TACAAATTCCTGAGGTCCCA+GGG | 0.496535 | 3_4:-68494495 | Msa0516970:CDS |
| GGTTATGTTAGTTTCAAACT+TGG | 0.498826 | 3_4:-68495379 | Msa0516970:CDS |
| TTACAAATTCCTGAGGTCCC+AGG | 0.501386 | 3_4:-68494496 | Msa0516970:CDS |
| GAAAAGAGACTTGGAGATGC+TGG | 0.501756 | 3_4:-68495400 | Msa0516970:CDS |
| TTTCTGTGAAGCACTTCGAC+AGG | 0.502170 | 3_4:-68493927 | Msa0516970:intron |
| ATACAAAACCCTGGGACCTC+AGG | 0.504226 | 3_4:+68494487 | None:intergenic |
| TTGCATCGTGAGGAAATAGA+AGG | 0.517561 | 3_4:+68494814 | None:intergenic |
| ATATAGAGGGACATTATCAT+TGG | 0.521316 | 3_4:-68495934 | None:intergenic |
| CAATGCCAATCATGCTATGC+GGG | 0.524290 | 3_4:-68494634 | Msa0516970:intron |
| TAGAGGGACATTATCATTGG+TGG | 0.525853 | 3_4:-68495931 | None:intergenic |
| GGAAGAGATAAAGGAGTTGT+GGG | 0.527364 | 3_4:-68493756 | Msa0516970:CDS |
| AAGTCGAGCATGATCAGAAA+GGG | 0.528485 | 3_4:+68492993 | None:intergenic |
| TGATGCATTCGCATTTCTAA+GGG | 0.533037 | 3_4:-68493981 | Msa0516970:CDS |
| TAGTCACTCTCTCGACAAGT+TGG | 0.536188 | 3_4:+68495641 | None:intergenic |
| TTTGAACGTAGAATGAGAAC+GGG | 0.538447 | 3_4:-68495906 | Msa0516970:exon |
| CATTTCCATCTATGTCAGCT+TGG | 0.539383 | 3_4:+68493732 | None:intergenic |
| TAAGTCGAGCATGATCAGAA+AGG | 0.539993 | 3_4:+68492992 | None:intergenic |
| TGGGTCCAAGCTGACATAGA+TGG | 0.540867 | 3_4:-68493737 | Msa0516970:CDS |
| TGATTGGCATTGGCTTGAGT+TGG | 0.541280 | 3_4:+68494645 | None:intergenic |
| ATGGGAAGGATTTCAAGGAT+TGG | 0.546080 | 3_4:-68495867 | Msa0516970:CDS |
| CGACAACAAGAATAAGGAGC+AGG | 0.549044 | 3_4:-68493121 | Msa0516970:CDS |
| CACTGATGCAGATGCTGACA+AGG | 0.551387 | 3_4:-68494439 | Msa0516970:intron |
| AATTTGTATGAAAAGAGACT+TGG | 0.556763 | 3_4:-68495409 | Msa0516970:CDS |
| AGAGGGACATTATCATTGGT+GGG | 0.556920 | 3_4:-68495930 | None:intergenic |
| GACTGGAATGGAAGCAAGCG+TGG | 0.563929 | 3_4:-68494525 | Msa0516970:CDS |
| AGAGTGACTATAGAGCATAT+TGG | 0.564609 | 3_4:-68495628 | Msa0516970:CDS |
| GCGAAACGGTGAAATTAGGC+AGG | 0.564680 | 3_4:-68494859 | Msa0516970:CDS |
| ATGTTAGTTTCAAACTTGGA+AGG | 0.564896 | 3_4:-68495375 | Msa0516970:CDS |
| TTATTTCTCAGTGACTGGAA+TGG | 0.565119 | 3_4:-68494537 | Msa0516970:CDS |
| AGGACGAACAACCGTGGAGA+TGG | 0.568957 | 3_4:-68495355 | Msa0516970:intron |
| GTAGAATGAGAACGGGTAAG+TGG | 0.570816 | 3_4:-68495899 | Msa0516970:exon |
| TGACTATAGAGCATATTGGT+TGG | 0.573810 | 3_4:-68495624 | Msa0516970:CDS |
| CTACCTTTCTCCACCTCAGG+AGG | 0.577262 | 3_4:+68493033 | None:intergenic |
| CAGCAAATCATCTGGGAGCA+CGG | 0.578468 | 3_4:+68492943 | None:intergenic |
| ATAGAGCATATTGGTTGGCA+AGG | 0.582004 | 3_4:-68495619 | Msa0516970:CDS |
| ATATATTTCCCCGATGATTG+CGG | 0.591841 | 3_4:+68494317 | None:intergenic |
| AGGAGCAAGAATGTTAAAAG+TGG | 0.592566 | 3_4:+68495782 | None:intergenic |
| CATCGTGAGGAAATAGAAGG+TGG | 0.593034 | 3_4:+68494817 | None:intergenic |
| CAAGTAATGCAAGGTTGTGG+TGG | 0.598052 | 3_4:+68495807 | None:intergenic |
| TTACAAACGCATCAATGATG+AGG | 0.600751 | 3_4:-68495757 | Msa0516970:intron |
| GGTGGAGAAAGGTAGATGGC+CGG | 0.616375 | 3_4:-68493025 | Msa0516970:CDS |
| TAGAATGAGAACGGGTAAGT+GGG | 0.630123 | 3_4:-68495898 | Msa0516970:exon |
| AAAGTGGTGCAAGTAATGCA+AGG | 0.633549 | 3_4:+68495798 | None:intergenic |
| CGTAAGACGATACAAAACCC+TGG | 0.634874 | 3_4:+68494478 | None:intergenic |
| GTAAGACGATACAAAACCCT+GGG | 0.637957 | 3_4:+68494479 | None:intergenic |
| TACCTTTCTCCACCTCAGGA+GGG | 0.639590 | 3_4:+68493034 | None:intergenic |
| GACATGTTTACAAATTCCTG+AGG | 0.641651 | 3_4:-68494503 | Msa0516970:CDS |
| ATTGTGTCAGCAAATCATCT+GGG | 0.646731 | 3_4:+68492936 | None:intergenic |
| AGAGATAGCGTTGCATCGTG+AGG | 0.646885 | 3_4:+68494804 | None:intergenic |
| TCATTCTCATGAGTTGAGTG+AGG | 0.655974 | 3_4:-68493777 | Msa0516970:CDS |
| ATCGTGAGGAAATAGAAGGT+GGG | 0.667884 | 3_4:+68494818 | None:intergenic |
| CTTGGAAGGACGAACAACCG+TGG | 0.669893 | 3_4:-68495361 | Msa0516970:CDS |
| GTGCAAGTAATGCAAGGTTG+TGG | 0.682671 | 3_4:+68495804 | None:intergenic |
| CCAATGCCAATCATGCTATG+CGG | 0.686315 | 3_4:-68494635 | Msa0516970:CDS |
| GAACGCGCATACCATCTCCA+CGG | 0.721216 | 3_4:+68495344 | None:intergenic |
| GTTAGTCACCGCAATCATCG+GGG | 0.740550 | 3_4:-68494325 | Msa0516970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTAATAATGTATTAAAT+TGG | - | chr3_4:68493630-68493649 | Msa0516970:intron | 10.0% |
| !! | TTGTAATAATGTATTAAATT+GGG | - | chr3_4:68493631-68493650 | Msa0516970:intron | 10.0% |
| !!! | TATTTTTTAAACATGTTATA+TGG | + | chr3_4:68493669-68493688 | None:intergenic | 10.0% |
| !! | TGTTTAAAAAATATTTACTG+AGG | - | chr3_4:68493676-68493695 | Msa0516970:intron | 15.0% |
| !! | GTTTAAAAAATATTTACTGA+GGG | - | chr3_4:68493677-68493696 | Msa0516970:intron | 15.0% |
| !!! | CTTTAACATTTTCAATTATA+AGG | - | chr3_4:68493910-68493929 | Msa0516970:intron | 15.0% |
| !! | TATTAAGAAAAATAAGTACA+CGG | + | chr3_4:68494282-68494301 | None:intergenic | 15.0% |
| !!! | AAAAATTTCTCTATTTTTTC+AGG | - | chr3_4:68494833-68494852 | Msa0516970:CDS | 15.0% |
| !!! | ATAGATTGTTTTTTTTTGAA+AGG | + | chr3_4:68495235-68495254 | None:intergenic | 15.0% |
| !! | AAACAAAAACAACAAAACAA+AGG | + | chr3_4:68493165-68493184 | None:intergenic | 20.0% |
| !! | TCAGTAAAAACAATTCTAAA+TGG | + | chr3_4:68493706-68493725 | None:intergenic | 20.0% |
| !!! | ATTTAGAATTGTTTTTACTG+AGG | - | chr3_4:68493705-68493724 | Msa0516970:intron | 20.0% |
| !! | GGTATCAAAATATTTAAATG+TGG | - | chr3_4:68494102-68494121 | Msa0516970:intron | 20.0% |
| !! | AATATTTAAATGTGGTATAC+AGG | - | chr3_4:68494110-68494129 | Msa0516970:intron | 20.0% |
| !!! | TTTCTTTAGAATTTTTCATC+TGG | - | chr3_4:68494466-68494485 | Msa0516970:CDS | 20.0% |
| !! | ATAGAATAAGTATAGATGAT+TGG | + | chr3_4:68494505-68494524 | None:intergenic | 20.0% |
| !! | AAAAATCCATGTGTTTATAA+AGG | - | chr3_4:68495028-68495047 | Msa0516970:intron | 20.0% |
| !! | AAAAAACCTTTATAAACACA+TGG | + | chr3_4:68495037-68495056 | None:intergenic | 20.0% |
| !!! | TAATTTATAGAATTTGCTAC+TGG | - | chr3_4:68495485-68495504 | Msa0516970:intron | 20.0% |
| !! | CATATTAAATTGTTCTTGTT+AGG | + | chr3_4:68495535-68495554 | None:intergenic | 20.0% |
| ! | TCAATCATCACAAATATTTG+AGG | + | chr3_4:68493198-68493217 | None:intergenic | 25.0% |
| ! | TATTTGTGATGATTGAAAAC+AGG | - | chr3_4:68493202-68493221 | Msa0516970:intron | 25.0% |
| !!! | CTGCTTATTTGTTTTGATTA+AGG | - | chr3_4:68493337-68493356 | Msa0516970:intron | 25.0% |
| ! | GTGTTCTACATTTCTATTAT+TGG | - | chr3_4:68493371-68493390 | Msa0516970:intron | 25.0% |
| ! | AATTTGTATGAAAAGAGACT+TGG | - | chr3_4:68493459-68493478 | Msa0516970:intron | 25.0% |
| !! | ATTTTGCTAAAATATCCCTT+TGG | - | chr3_4:68493554-68493573 | Msa0516970:intron | 25.0% |
| ! | TAATGTATTAAATTGGGCAA+AGG | - | chr3_4:68493637-68493656 | Msa0516970:intron | 25.0% |
| ! | AATGTATTAAATTGGGCAAA+GGG | - | chr3_4:68493638-68493657 | Msa0516970:intron | 25.0% |
| !!! | GAAAAATGCTTTTAGAGTTT+AGG | - | chr3_4:68493727-68493746 | Msa0516970:CDS | 25.0% |
| !! | TAGTCTTTCCATTTTCAAAA+TGG | - | chr3_4:68493987-68494006 | Msa0516970:CDS | 25.0% |
| ! | TTAAAATTTCATCTTGTTGC+AGG | - | chr3_4:68494157-68494176 | Msa0516970:intron | 25.0% |
| !!! | TATGTGCTGTTGATTTTATT+TGG | - | chr3_4:68494571-68494590 | Msa0516970:intron | 25.0% |
| !! | AGTAATTTTCGATATTTGTC+AGG | + | chr3_4:68494606-68494625 | None:intergenic | 25.0% |
| ! | GAAAATTACTAAAAGCAAGT+TGG | - | chr3_4:68494616-68494635 | Msa0516970:intron | 25.0% |
| !! | ATGACTTTTACATGTCTATA+AGG | - | chr3_4:68494714-68494733 | Msa0516970:intron | 25.0% |
| !! | TTTTACATGTCTATAAGGTT+AGG | - | chr3_4:68494719-68494738 | Msa0516970:intron | 25.0% |
| ! | TCTTGACTATAAAGAATTTC+TGG | - | chr3_4:68495163-68495182 | Msa0516970:intron | 25.0% |
| ! | CAATTTAATATGTCTATGCA+TGG | - | chr3_4:68495543-68495562 | Msa0516970:intron | 25.0% |
| ! | GTTTAAAAATTGTCATTCAG+TGG | - | chr3_4:68495565-68495584 | Msa0516970:CDS | 25.0% |
| !!! | TTTTTGTTTCTTTTGAGCAA+TGG | - | chr3_4:68495611-68495630 | Msa0516970:CDS | 25.0% |
| !!! | ATAGCTTGTTTGTTAAATCA+TGG | - | chr3_4:68495664-68495683 | Msa0516970:intron | 25.0% |
| ! | TTTTGAACGTAGAATGAGAA+CGG | - | chr3_4:68492961-68492980 | Msa0516970:CDS | 30.0% |
| TCATTGATGCGTTTGTAAAT+AGG | + | chr3_4:68493109-68493128 | None:intergenic | 30.0% | |
| GGAATCATAGGATATTAGAT+TGG | - | chr3_4:68493270-68493289 | Msa0516970:intron | 30.0% | |
| GTCTTCTATTATTTGTCTTC+AGG | - | chr3_4:68493307-68493326 | Msa0516970:intron | 30.0% | |
| TACATTTCTATTATTGGCCA+AGG | - | chr3_4:68493377-68493396 | Msa0516970:intron | 30.0% | |
| ACATTTCTATTATTGGCCAA+GGG | - | chr3_4:68493378-68493397 | Msa0516970:intron | 30.0% | |
| CTAATGTGTTGAATTTGTGA+AGG | - | chr3_4:68493407-68493426 | Msa0516970:intron | 30.0% | |
| ! | TTGAATTTGTGAAGGAGTTT+TGG | - | chr3_4:68493415-68493434 | Msa0516970:intron | 30.0% |
| ! | TGAATTTGTGAAGGAGTTTT+GGG | - | chr3_4:68493416-68493435 | Msa0516970:intron | 30.0% |
| ! | GGTTATGTTAGTTTCAAACT+TGG | - | chr3_4:68493489-68493508 | Msa0516970:intron | 30.0% |
| ! | ATGTTAGTTTCAAACTTGGA+AGG | - | chr3_4:68493493-68493512 | Msa0516970:intron | 30.0% |
| !!! | GGGATATTTTAGCAAAATTG+AGG | + | chr3_4:68493552-68493571 | None:intergenic | 30.0% |
| ATGAATTTGTGACAACCAAA+GGG | + | chr3_4:68493572-68493591 | None:intergenic | 30.0% | |
| TATTACAAATCCATAACGTC+CGG | + | chr3_4:68493619-68493638 | None:intergenic | 30.0% | |
| ATGTATTAAATTGGGCAAAG+GGG | - | chr3_4:68493639-68493658 | Msa0516970:intron | 30.0% | |
| TTATATGTCAAGGGTTACAT+TGG | + | chr3_4:68493756-68493775 | None:intergenic | 30.0% | |
| ! | TTCTGGTTGTTATATGTCAA+GGG | + | chr3_4:68493765-68493784 | None:intergenic | 30.0% |
| ! | ATTCTGGTTGTTATATGTCA+AGG | + | chr3_4:68493766-68493785 | None:intergenic | 30.0% |
| !! | GCTTTTGGAAAATGTAATTC+TGG | + | chr3_4:68493782-68493801 | None:intergenic | 30.0% |
| TTCTGATATAGTGTTATCCT+TGG | - | chr3_4:68493847-68493866 | Msa0516970:intron | 30.0% | |
| TCTGATATAGTGTTATCCTT+GGG | - | chr3_4:68493848-68493867 | Msa0516970:intron | 30.0% | |
| ! | TCTTTTAATAGCAGTGCAAA+CGG | - | chr3_4:68493883-68493902 | Msa0516970:intron | 30.0% |
| ! | ATGAAATTTTAAGCTAAGCC+TGG | + | chr3_4:68494149-68494168 | None:intergenic | 30.0% |
| TGTAAAAGTCATAACGAAGA+TGG | + | chr3_4:68494706-68494725 | None:intergenic | 30.0% | |
| CGTAATACAATCTTCATTCT+CGG | + | chr3_4:68494913-68494932 | None:intergenic | 30.0% | |
| GAAGATTGTATTACGTATTC+TGG | - | chr3_4:68494918-68494937 | Msa0516970:CDS | 30.0% | |
| TCTTTGCAGCTCAATTTAAT+TGG | - | chr3_4:68495068-68495087 | Msa0516970:intron | 30.0% | |
| ! | GCGTAGATATAATTTTTCTG+AGG | + | chr3_4:68495296-68495315 | None:intergenic | 30.0% |
| CAAAACATGTCACATGTAAT+TGG | - | chr3_4:68495385-68495404 | Msa0516970:CDS | 30.0% | |
| GCAGTTTATGTCTAGTTAAA+TGG | + | chr3_4:68495438-68495457 | None:intergenic | 30.0% | |
| TTAGGTCACTCATGATTAAA+TGG | + | chr3_4:68495517-68495536 | None:intergenic | 30.0% | |
| GGTGTAAAATTTGTATAGAG+TGG | - | chr3_4:68495586-68495605 | Msa0516970:CDS | 30.0% | |
| TTTGAACGTAGAATGAGAAC+GGG | - | chr3_4:68492962-68492981 | Msa0516970:CDS | 35.0% | |
| !! | TGGTGGATTAGTATCGTTTA+AGG | + | chr3_4:68493047-68493066 | None:intergenic | 35.0% |
| AGGAGCAAGAATGTTAAAAG+TGG | + | chr3_4:68493089-68493108 | None:intergenic | 35.0% | |
| TTACAAACGCATCAATGATG+AGG | - | chr3_4:68493111-68493130 | Msa0516970:CDS | 35.0% | |
| AGAGTGACTATAGAGCATAT+TGG | - | chr3_4:68493240-68493259 | Msa0516970:intron | 35.0% | |
| TGACTATAGAGCATATTGGT+TGG | - | chr3_4:68493244-68493263 | Msa0516970:intron | 35.0% | |
| GATGAATTTGTGACAACCAA+AGG | + | chr3_4:68493573-68493592 | None:intergenic | 35.0% | |
| ! | TGTCATCATATTTTTCACGC+CGG | - | chr3_4:68493597-68493616 | Msa0516970:intron | 35.0% |
| TGTATTAAATTGGGCAAAGG+GGG | - | chr3_4:68493640-68493659 | Msa0516970:intron | 35.0% | |
| !! | CCTAAACAAAAGCATGCTTT+TGG | + | chr3_4:68493797-68493816 | None:intergenic | 35.0% |
| !! | CCAAAAGCATGCTTTTGTTT+AGG | - | chr3_4:68493794-68493813 | Msa0516970:CDS | 35.0% |
| TTATCCTTGGGTTACATAAC+AGG | - | chr3_4:68493860-68493879 | Msa0516970:intron | 35.0% | |
| ! | CCATTTTCAAAATGGCGAAA+CGG | - | chr3_4:68493995-68494014 | Msa0516970:CDS | 35.0% |
| ATCTCTTGTACGATTGAAAC+AGG | - | chr3_4:68494081-68494100 | Msa0516970:intron | 35.0% | |
| !!! | ACAGGCATTTTTTAATGACC+AGG | - | chr3_4:68494128-68494147 | Msa0516970:intron | 35.0% |
| ! | ACAGTTTATTTCTCAGTGAC+TGG | - | chr3_4:68494326-68494345 | Msa0516970:CDS | 35.0% |
| ! | TTATTTCTCAGTGACTGGAA+TGG | - | chr3_4:68494331-68494350 | Msa0516970:CDS | 35.0% |
| GACATGTTTACAAATTCCTG+AGG | - | chr3_4:68494365-68494384 | Msa0516970:intron | 35.0% | |
| TCTATATAATGTCGATGCAG+TGG | - | chr3_4:68494520-68494539 | Msa0516970:CDS | 35.0% | |
| CTATATAATGTCGATGCAGT+GGG | - | chr3_4:68494521-68494540 | Msa0516970:CDS | 35.0% | |
| ATATATTTCCCCGATGATTG+CGG | + | chr3_4:68494554-68494573 | None:intergenic | 35.0% | |
| AGTAGTATAGGAAACACATG+TGG | + | chr3_4:68494745-68494764 | None:intergenic | 35.0% | |
| !! | ATAGTGGACATCATTGTAGA+CGG | + | chr3_4:68494773-68494792 | None:intergenic | 35.0% |
| AACTAAAGATTGCACCATAG+TGG | + | chr3_4:68494789-68494808 | None:intergenic | 35.0% | |
| TGATGCATTCGCATTTCTAA+GGG | - | chr3_4:68494887-68494906 | Msa0516970:CDS | 35.0% | |
| AGATAAGCATGTGCGTTAAA+TGG | + | chr3_4:68495007-68495026 | None:intergenic | 35.0% | |
| ATTGAGTGCTTATCTCTACA+AGG | - | chr3_4:68495349-68495368 | Msa0516970:intron | 35.0% | |
| ! | ATCATGGTCTTGAAATTACG+TGG | - | chr3_4:68495680-68495699 | Msa0516970:intron | 35.0% |
| AAGAGACGACAACAAGAATA+AGG | - | chr3_4:68495741-68495760 | Msa0516970:intron | 35.0% | |
| GACGTTCAAGAACAAACAAT+TGG | - | chr3_4:68495784-68495803 | Msa0516970:CDS | 35.0% | |
| TAGAATGAGAACGGGTAAGT+GGG | - | chr3_4:68492970-68492989 | Msa0516970:CDS | 40.0% | |
| AAAGCATGGGAAGGATTTCA+AGG | - | chr3_4:68492996-68493015 | Msa0516970:CDS | 40.0% | |
| ATGGGAAGGATTTCAAGGAT+TGG | - | chr3_4:68493001-68493020 | Msa0516970:CDS | 40.0% | |
| AAAGTGGTGCAAGTAATGCA+AGG | + | chr3_4:68493073-68493092 | None:intergenic | 40.0% | |
| ! | ATAGAGCATATTGGTTGGCA+AGG | - | chr3_4:68493249-68493268 | Msa0516970:intron | 40.0% |
| ATTGGTTGGCAAGGAATCAT+AGG | - | chr3_4:68493258-68493277 | Msa0516970:intron | 40.0% | |
| !!! | TTTGTGAAGGAGTTTTGGGT+AGG | - | chr3_4:68493420-68493439 | Msa0516970:intron | 40.0% |
| AAGACCTGTTATGTAACCCA+AGG | + | chr3_4:68493867-68493886 | None:intergenic | 40.0% | |
| GAGTTGCACTTCAACGATAT+TGG | - | chr3_4:68493932-68493951 | Msa0516970:CDS | 40.0% | |
| !! | CCGTTTCGCCATTTTGAAAA+TGG | + | chr3_4:68493998-68494017 | None:intergenic | 40.0% |
| AATGGCGAAACGGTGAAATT+AGG | - | chr3_4:68494005-68494024 | Msa0516970:CDS | 40.0% | |
| ATCGTGAGGAAATAGAAGGT+GGG | + | chr3_4:68494053-68494072 | None:intergenic | 40.0% | |
| TTGCATCGTGAGGAAATAGA+AGG | + | chr3_4:68494057-68494076 | None:intergenic | 40.0% | |
| AATTACCCGCATAGCATGAT+TGG | + | chr3_4:68494242-68494261 | None:intergenic | 40.0% | |
| GTAAGACGATACAAAACCCT+GGG | + | chr3_4:68494392-68494411 | None:intergenic | 40.0% | |
| AGTTGGAGTGAAGCAGTATT+TGG | - | chr3_4:68494633-68494652 | Msa0516970:intron | 40.0% | |
| AGCAGTATTTGGCATGTTCA+AGG | - | chr3_4:68494644-68494663 | Msa0516970:CDS | 40.0% | |
| TAGACGGTTCACAGTAGTAT+AGG | + | chr3_4:68494757-68494776 | None:intergenic | 40.0% | |
| GTCTACAATGATGTCCACTA+TGG | - | chr3_4:68494772-68494791 | Msa0516970:intron | 40.0% | |
| ! | TGGTGCAATCTTTAGTTTCG+TGG | - | chr3_4:68494792-68494811 | Msa0516970:CDS | 40.0% |
| GTGATGCATTCGCATTTCTA+AGG | - | chr3_4:68494886-68494905 | Msa0516970:CDS | 40.0% | |
| ! | TCATTCTCATGAGTTGAGTG+AGG | - | chr3_4:68495091-68495110 | Msa0516970:intron | 40.0% |
| GTTGAGTGAGGAAGAGATAA+AGG | - | chr3_4:68495103-68495122 | Msa0516970:intron | 40.0% | |
| AGGAAGAGATAAAGGAGTTG+TGG | - | chr3_4:68495111-68495130 | Msa0516970:intron | 40.0% | |
| GGAAGAGATAAAGGAGTTGT+GGG | - | chr3_4:68495112-68495131 | Msa0516970:intron | 40.0% | |
| CATTTCCATCTATGTCAGCT+TGG | + | chr3_4:68495139-68495158 | None:intergenic | 40.0% | |
| CAAGCTGACATAGATGGAAA+TGG | - | chr3_4:68495137-68495156 | Msa0516970:intron | 40.0% | |
| TCTACGCAATCAATGACTAG+AGG | - | chr3_4:68495309-68495328 | Msa0516970:intron | 40.0% | |
| AAGAATAAGGAGCAGGAAGA+TGG | - | chr3_4:68495754-68495773 | Msa0516970:intron | 40.0% | |
| AAGTCGAGCATGATCAGAAA+GGG | + | chr3_4:68495878-68495897 | None:intergenic | 40.0% | |
| TAAGTCGAGCATGATCAGAA+AGG | + | chr3_4:68495879-68495898 | None:intergenic | 40.0% | |
| GTAGAATGAGAACGGGTAAG+TGG | - | chr3_4:68492969-68492988 | Msa0516970:CDS | 45.0% | |
| ! | GGTAAGTGGGCAAAAAGCAT+GGG | - | chr3_4:68492983-68493002 | Msa0516970:CDS | 45.0% |
| CAAGTAATGCAAGGTTGTGG+TGG | + | chr3_4:68493064-68493083 | None:intergenic | 45.0% | |
| GTGCAAGTAATGCAAGGTTG+TGG | + | chr3_4:68493067-68493086 | None:intergenic | 45.0% | |
| AGTCACTCTCTCGACAAGTT+GGG | + | chr3_4:68493229-68493248 | None:intergenic | 45.0% | |
| TAGTCACTCTCTCGACAAGT+TGG | + | chr3_4:68493230-68493249 | None:intergenic | 45.0% | |
| CTATTATTGGCCAAGGGTGA+AGG | - | chr3_4:68493384-68493403 | Msa0516970:intron | 45.0% | |
| !! | AACACATTAGCCTTCACCCT+TGG | + | chr3_4:68493397-68493416 | None:intergenic | 45.0% |
| GAAAAGAGACTTGGAGATGC+TGG | - | chr3_4:68493468-68493487 | Msa0516970:intron | 45.0% | |
| ! | ATTTTTCACGCCGGACGTTA+TGG | - | chr3_4:68493606-68493625 | Msa0516970:intron | 45.0% |
| CATCGTGAGGAAATAGAAGG+TGG | + | chr3_4:68494054-68494073 | None:intergenic | 45.0% | |
| !! | TGATTGGCATTGGCTTGAGT+TGG | + | chr3_4:68494226-68494245 | None:intergenic | 45.0% |
| CCAATGCCAATCATGCTATG+CGG | - | chr3_4:68494233-68494252 | Msa0516970:CDS | 45.0% | |
| CAATGCCAATCATGCTATGC+GGG | - | chr3_4:68494234-68494253 | Msa0516970:CDS | 45.0% | |
| GCGGGTAATTCAACTCGATA+TGG | - | chr3_4:68494252-68494271 | Msa0516970:CDS | 45.0% | |
| TTACAAATTCCTGAGGTCCC+AGG | - | chr3_4:68494372-68494391 | Msa0516970:intron | 45.0% | |
| TACAAATTCCTGAGGTCCCA+GGG | - | chr3_4:68494373-68494392 | Msa0516970:intron | 45.0% | |
| CGTAAGACGATACAAAACCC+TGG | + | chr3_4:68494393-68494412 | None:intergenic | 45.0% | |
| ! | TTTCTGTGAAGCACTTCGAC+AGG | - | chr3_4:68494941-68494960 | Msa0516970:CDS | 45.0% |
| CGACAACAAGAATAAGGAGC+AGG | - | chr3_4:68495747-68495766 | Msa0516970:intron | 45.0% | |
| TCAGAAAGGGAGTAGTCTTC+CGG | + | chr3_4:68495865-68495884 | None:intergenic | 45.0% | |
| GGGTAAGTGGGCAAAAAGCA+TGG | - | chr3_4:68492982-68493001 | Msa0516970:CDS | 50.0% | |
| ! | AGTGGGCAAAAAGCATGGGA+AGG | - | chr3_4:68492987-68493006 | Msa0516970:CDS | 50.0% |
| GCGAAACGGTGAAATTAGGC+AGG | - | chr3_4:68494009-68494028 | Msa0516970:CDS | 50.0% | |
| AGAGATAGCGTTGCATCGTG+AGG | + | chr3_4:68494067-68494086 | None:intergenic | 50.0% | |
| CCGCATAGCATGATTGGCAT+TGG | + | chr3_4:68494236-68494255 | None:intergenic | 50.0% | |
| ATACAAAACCCTGGGACCTC+AGG | + | chr3_4:68494384-68494403 | None:intergenic | 50.0% | |
| CACTGATGCAGATGCTGACA+AGG | - | chr3_4:68494429-68494448 | Msa0516970:intron | 50.0% | |
| !! | GGGTTAGTCACCGCAATCAT+CGG | - | chr3_4:68494541-68494560 | Msa0516970:CDS | 50.0% |
| ! | GGTTAGTCACCGCAATCATC+GGG | - | chr3_4:68494542-68494561 | Msa0516970:intron | 50.0% |
| GTTAGTCACCGCAATCATCG+GGG | - | chr3_4:68494543-68494562 | Msa0516970:intron | 50.0% | |
| TGGGTCCAAGCTGACATAGA+TGG | - | chr3_4:68495131-68495150 | Msa0516970:intron | 50.0% | |
| AGCAGACAAGCTTGTCTTGC+AGG | + | chr3_4:68495637-68495656 | None:intergenic | 50.0% | |
| CGTGGTTGCAGCAGCAAATA+TGG | - | chr3_4:68495698-68495717 | Msa0516970:intron | 50.0% | |
| !!! | TGCAGTTTTGTTCCCTCCTG+AGG | - | chr3_4:68495822-68495841 | Msa0516970:CDS | 50.0% |
| !!! | AGTTTTGTTCCCTCCTGAGG+TGG | - | chr3_4:68495825-68495844 | Msa0516970:CDS | 50.0% |
| TACCTTTCTCCACCTCAGGA+GGG | + | chr3_4:68495837-68495856 | None:intergenic | 50.0% | |
| CATCTACCTTTCTCCACCTC+AGG | + | chr3_4:68495841-68495860 | None:intergenic | 50.0% | |
| CTGAGGTGGAGAAAGGTAGA+TGG | - | chr3_4:68495839-68495858 | Msa0516970:CDS | 50.0% | |
| ! | TGGGAGCACGGCATTCTTAT+CGG | + | chr3_4:68495916-68495935 | None:intergenic | 50.0% |
| CAGCAAATCATCTGGGAGCA+CGG | + | chr3_4:68495928-68495947 | None:intergenic | 50.0% | |
| CTTGGAAGGACGAACAACCG+TGG | - | chr3_4:68493507-68493526 | Msa0516970:intron | 55.0% | |
| AGGACGAACAACCGTGGAGA+TGG | - | chr3_4:68493513-68493532 | Msa0516970:intron | 55.0% | |
| GAACGCGCATACCATCTCCA+CGG | + | chr3_4:68493527-68493546 | None:intergenic | 55.0% | |
| GACTGGAATGGAAGCAAGCG+TGG | - | chr3_4:68494343-68494362 | Msa0516970:intron | 55.0% | |
| TTCCCTCCTGAGGTGGAGAA+AGG | - | chr3_4:68495832-68495851 | Msa0516970:CDS | 55.0% | |
| CTACCTTTCTCCACCTCAGG+AGG | + | chr3_4:68495838-68495857 | None:intergenic | 55.0% | |
| GGTGGAGAAAGGTAGATGGC+CGG | - | chr3_4:68495843-68495862 | Msa0516970:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68492942 | 68495948 | 68492942 | ID=Msa0516970;Name=Msa0516970 |
| chr3_4 | mRNA | 68492942 | 68495948 | 68492942 | ID=Msa0516970-mRNA-1;Parent=Msa0516970;Name=Msa0516970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=32|0.77|0.5|1|1|1|10|0|456 |
| chr3_4 | exon | 68492942 | 68493181 | 68492942 | ID=Msa0516970-mRNA-1:exon:18122;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68493706 | 68493813 | 68493706 | ID=Msa0516970-mRNA-1:exon:18121;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68493928 | 68494035 | 68493928 | ID=Msa0516970-mRNA-1:exon:18120;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68494225 | 68494350 | 68494225 | ID=Msa0516970-mRNA-1:exon:18119;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68494440 | 68494560 | 68494440 | ID=Msa0516970-mRNA-1:exon:18118;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68494635 | 68494711 | 68494635 | ID=Msa0516970-mRNA-1:exon:18117;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68494788 | 68495008 | 68494788 | ID=Msa0516970-mRNA-1:exon:18116;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68495356 | 68495461 | 68495356 | ID=Msa0516970-mRNA-1:exon:18115;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68495562 | 68495666 | 68495562 | ID=Msa0516970-mRNA-1:exon:18114;Parent=Msa0516970-mRNA-1 |
| chr3_4 | exon | 68495758 | 68495948 | 68495758 | ID=Msa0516970-mRNA-1:exon:18113;Parent=Msa0516970-mRNA-1 |
| chr3_4 | five_prime_UTR | 68495917 | 68495948 | 68495917 | ID=Msa0516970-mRNA-1:five_prime_utr;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68495758 | 68495916 | 68495758 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68495562 | 68495666 | 68495562 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68495356 | 68495461 | 68495356 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68494788 | 68495008 | 68494788 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68494635 | 68494711 | 68494635 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68494440 | 68494560 | 68494440 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68494225 | 68494350 | 68494225 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68493928 | 68494035 | 68493928 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68493706 | 68493813 | 68493706 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| chr3_4 | CDS | 68492942 | 68493181 | 68492942 | ID=Msa0516970-mRNA-1:cds;Parent=Msa0516970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
