AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426240 MtrunA17_Chr3g0128181 97.807 456 6 1 1 456 26 477 0.0 928
Msa0426240 MtrunA17_Chr5g0428931 77.262 431 88 3 29 453 16 442 0.0 664
Msa0426240 MtrunA17_Chr8g0345661 64.235 425 144 3 34 454 46 466 0.0 546
Msa0426240 MtrunA17_Chr7g0271431 91.837 49 4 0 307 355 22 70 3.76e-25 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426240 AT5G54130.2 74.497 447 98 6 11 455 3 435 0.0 683
Msa0426240 AT1G02270.1 59.584 433 164 4 21 452 62 484 0.0 540
Msa0426240 AT5G54130.4 75.000 336 75 4 11 345 3 330 0.0 526
Msa0426240 AT5G54130.3 74.405 336 75 5 11 345 3 328 0.0 517
Msa0426240 AT1G02270.2 58.757 354 140 3 100 452 1 349 7.44e-152 436

Find 93 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGACTATAAAGAATTTC+TGG 0.149480 3_2:-76623333 Msa0426240:intron
GAAGATTGTATTACGTATTC+TGG 0.231159 3_2:-76623578 Msa0426240:CDS
TGGTGGATTAGTATCGTTTA+AGG 0.241206 3_2:+76625452 None:intergenic
CGTGGTTGCAGCAGCAAATA+TGG 0.248857 3_2:-76622798 Msa0426240:intron
TCATTGATGCGTTTGTAAAT+AGG 0.260373 3_2:+76625390 None:intergenic
TCTTTGCAGCTCAATTTAAT+TGG 0.269178 3_2:-76623428 Msa0426240:intron
TTGAATTTGTGAAGGAGTTT+TGG 0.271683 3_2:-76625081 Msa0426240:intron
AGTTGGAGTGAAGCAGTATT+TGG 0.273393 3_2:-76623863 Msa0426240:CDS
GTCTTCTATTATTTGTCTTC+AGG 0.288609 3_2:-76625189 Msa0426240:intron
GTGATGCATTCGCATTTCTA+AGG 0.292926 3_2:-76623610 Msa0426240:CDS
GTTGAGTGAGGAAGAGATAA+AGG 0.304033 3_2:-76623393 Msa0426240:CDS
AATGGCGAAACGGTGAAATT+AGG 0.348821 3_2:-76624491 Msa0426240:CDS
AAGAGACGACAACAAGAATA+AGG 0.370878 3_2:-76622755 Msa0426240:CDS
AATTACCCGCATAGCATGAT+TGG 0.373854 3_2:+76624257 None:intergenic
GAGTTGCACTTCAACGATAT+TGG 0.376186 3_2:-76624564 Msa0426240:CDS
GACGTTCAAGAACAAACAAT+TGG 0.391637 3_2:-76622712 Msa0426240:CDS
TGGGAGCACGGCATTCTTAT+CGG 0.397622 3_2:+76622583 None:intergenic
CATTGTGTCAGCAAATCATC+TGG 0.415046 3_2:+76622563 None:intergenic
CGTAATACAATCTTCATTCT+CGG 0.415852 3_2:+76623586 None:intergenic
ATTGGTTGGCAAGGAATCAT+AGG 0.425259 3_2:-76625238 Msa0426240:CDS
GGTTAGTCACCGCAATCATC+GGG 0.427328 3_2:-76623954 Msa0426240:CDS
ACAGTTTATTTCTCAGTGAC+TGG 0.438180 3_2:-76624170 Msa0426240:intron
ATCTCTTGTACGATTGAAAC+AGG 0.442832 3_2:-76624415 Msa0426240:intron
TTCCCTCCTGAGGTGGAGAA+AGG 0.462650 3_2:-76622664 Msa0426240:CDS
CCGCATAGCATGATTGGCAT+TGG 0.463891 3_2:+76624263 None:intergenic
TCAGAAAGGGAGTAGTCTTC+CGG 0.466059 3_2:+76622634 None:intergenic
AGGAAGAGATAAAGGAGTTG+TGG 0.467760 3_2:-76623385 Msa0426240:CDS
AAAGCATGGGAAGGATTTCA+AGG 0.474928 3_2:-76625500 Msa0426240:CDS
GGAATCATAGGATATTAGAT+TGG 0.479153 3_2:-76625226 Msa0426240:CDS
AGCAGTATTTGGCATGTTCA+AGG 0.480053 3_2:-76623852 Msa0426240:intron
AAGAATAAGGAGCAGGAAGA+TGG 0.483958 3_2:-76622742 Msa0426240:CDS
GGGTTAGTCACCGCAATCAT+CGG 0.484438 3_2:-76623955 Msa0426240:CDS
CAAGCTGACATAGATGGAAA+TGG 0.487916 3_2:-76623359 Msa0426240:CDS
AGTCACTCTCTCGACAAGTT+GGG 0.491261 3_2:+76625270 None:intergenic
ATATAAAGGGACATTATCAT+TGG 0.492992 3_2:-76625562 None:intergenic
CTGAGGTGGAGAAAGGTAGA+TGG 0.494182 3_2:-76622657 Msa0426240:CDS
GAAAATTACTAAAAGCAAGT+TGG 0.494595 3_2:-76623880 Msa0426240:CDS
CATCTACCTTTCTCCACCTC+AGG 0.495969 3_2:+76622658 None:intergenic
TACAAATTCCTGAGGTCCCA+GGG 0.496535 3_2:-76624123 Msa0426240:CDS
GGTTATGTTAGTTTCAAACT+TGG 0.498826 3_2:-76625007 Msa0426240:CDS
TTACAAATTCCTGAGGTCCC+AGG 0.501386 3_2:-76624124 Msa0426240:CDS
GAAAAGAGACTTGGAGATGC+TGG 0.501756 3_2:-76625028 Msa0426240:CDS
TTTCTGTGAAGCACTTCGAC+AGG 0.502170 3_2:-76623555 Msa0426240:intron
ATACAAAACCCTGGGACCTC+AGG 0.504226 3_2:+76624115 None:intergenic
TAAAGGGACATTATCATTGG+TGG 0.515631 3_2:-76625559 None:intergenic
TTGCATCGTGAGGAAATAGA+AGG 0.517561 3_2:+76624442 None:intergenic
CAATGCCAATCATGCTATGC+GGG 0.524290 3_2:-76624262 Msa0426240:intron
GGAAGAGATAAAGGAGTTGT+GGG 0.527364 3_2:-76623384 Msa0426240:CDS
AAGTCGAGCATGATCAGAAA+GGG 0.528485 3_2:+76622621 None:intergenic
TGATGCATTCGCATTTCTAA+GGG 0.533037 3_2:-76623609 Msa0426240:CDS
TAGTCACTCTCTCGACAAGT+TGG 0.536188 3_2:+76625269 None:intergenic
TTTGAACGTAGAATGAGAAC+GGG 0.538447 3_2:-76625534 Msa0426240:exon
CATTTCCATCTATGTCAGCT+TGG 0.539383 3_2:+76623360 None:intergenic
TAAGTCGAGCATGATCAGAA+AGG 0.539993 3_2:+76622620 None:intergenic
TGGGTCCAAGCTGACATAGA+TGG 0.540867 3_2:-76623365 Msa0426240:CDS
TGATTGGCATTGGCTTGAGT+TGG 0.541280 3_2:+76624273 None:intergenic
AAAGGGACATTATCATTGGT+GGG 0.545786 3_2:-76625558 None:intergenic
ATGGGAAGGATTTCAAGGAT+TGG 0.546080 3_2:-76625495 Msa0426240:CDS
CGACAACAAGAATAAGGAGC+AGG 0.549044 3_2:-76622749 Msa0426240:CDS
CACTGATGCAGATGCTGACA+AGG 0.551387 3_2:-76624067 Msa0426240:intron
AATTTGTATGAAAAGAGACT+TGG 0.556763 3_2:-76625037 Msa0426240:CDS
GACTGGAATGGAAGCAAGCG+TGG 0.563929 3_2:-76624153 Msa0426240:CDS
AGAGTGACTATAGAGCATAT+TGG 0.564609 3_2:-76625256 Msa0426240:CDS
GCGAAACGGTGAAATTAGGC+AGG 0.564680 3_2:-76624487 Msa0426240:CDS
ATGTTAGTTTCAAACTTGGA+AGG 0.564896 3_2:-76625003 Msa0426240:CDS
TTATTTCTCAGTGACTGGAA+TGG 0.565119 3_2:-76624165 Msa0426240:CDS
AGGACGAACAACCGTGGAGA+TGG 0.568957 3_2:-76624983 Msa0426240:intron
GTAGAATGAGAACGGGTAAG+TGG 0.570816 3_2:-76625527 Msa0426240:exon
TGACTATAGAGCATATTGGT+TGG 0.573810 3_2:-76625252 Msa0426240:CDS
CTACCTTTCTCCACCTCAGG+AGG 0.577262 3_2:+76622661 None:intergenic
CAGCAAATCATCTGGGAGCA+CGG 0.578468 3_2:+76622571 None:intergenic
ATAGAGCATATTGGTTGGCA+AGG 0.582004 3_2:-76625247 Msa0426240:CDS
ATATATTTCCCCGATGATTG+CGG 0.591841 3_2:+76623945 None:intergenic
AGGAGCAAGAATGTTAAAAG+TGG 0.592566 3_2:+76625410 None:intergenic
CATCGTGAGGAAATAGAAGG+TGG 0.593034 3_2:+76624445 None:intergenic
CAAGTAATGCAAGGTTGTGG+TGG 0.598052 3_2:+76625435 None:intergenic
TTACAAACGCATCAATGATG+AGG 0.600751 3_2:-76625385 Msa0426240:intron
GGTGGAGAAAGGTAGATGGC+CGG 0.616375 3_2:-76622653 Msa0426240:CDS
TAGAATGAGAACGGGTAAGT+GGG 0.630123 3_2:-76625526 Msa0426240:exon
AAAGTGGTGCAAGTAATGCA+AGG 0.633549 3_2:+76625426 None:intergenic
CGTAAGACGATACAAAACCC+TGG 0.634874 3_2:+76624106 None:intergenic
GTAAGACGATACAAAACCCT+GGG 0.637957 3_2:+76624107 None:intergenic
TACCTTTCTCCACCTCAGGA+GGG 0.639590 3_2:+76622662 None:intergenic
GACATGTTTACAAATTCCTG+AGG 0.641651 3_2:-76624131 Msa0426240:CDS
ATTGTGTCAGCAAATCATCT+GGG 0.646731 3_2:+76622564 None:intergenic
AGAGATAGCGTTGCATCGTG+AGG 0.646885 3_2:+76624432 None:intergenic
TCATTCTCATGAGTTGAGTG+AGG 0.655974 3_2:-76623405 Msa0426240:CDS
ATCGTGAGGAAATAGAAGGT+GGG 0.667884 3_2:+76624446 None:intergenic
CTTGGAAGGACGAACAACCG+TGG 0.669893 3_2:-76624989 Msa0426240:CDS
GTGCAAGTAATGCAAGGTTG+TGG 0.682671 3_2:+76625432 None:intergenic
CCAATGCCAATCATGCTATG+CGG 0.686315 3_2:-76624263 Msa0426240:CDS
GAACGCGCATACCATCTCCA+CGG 0.721216 3_2:+76624972 None:intergenic
GTTAGTCACCGCAATCATCG+GGG 0.740550 3_2:-76623953 Msa0426240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAATAATGTATTAAAT+TGG - chr3_2:76623258-76623277 Msa0426240:intron 10.0%
!! TTGTAATAATGTATTAAATT+GGG - chr3_2:76623259-76623278 Msa0426240:intron 10.0%
!!! TATTTTTTAAACATGTTATA+TGG + chr3_2:76623297-76623316 None:intergenic 10.0%
!! TGTTTAAAAAATATTTACTG+AGG - chr3_2:76623304-76623323 Msa0426240:intron 15.0%
!! GTTTAAAAAATATTTACTGA+GGG - chr3_2:76623305-76623324 Msa0426240:intron 15.0%
!!! CTTTAACATTTTCAATTATA+AGG - chr3_2:76623538-76623557 Msa0426240:intron 15.0%
!! TATTAAGAAAAATAAGTACA+CGG + chr3_2:76623910-76623929 None:intergenic 15.0%
!!! AAAAATTTCTCTATTTTTTC+AGG - chr3_2:76624461-76624480 Msa0426240:CDS 15.0%
!!! ATAGATTGTTTTTTTTTGAA+AGG + chr3_2:76624863-76624882 None:intergenic 15.0%
!! AAACAAAAACAACAAAACAA+AGG + chr3_2:76622793-76622812 None:intergenic 20.0%
!! TCAGTAAAAACAATTCTAAA+TGG + chr3_2:76623334-76623353 None:intergenic 20.0%
!!! ATTTAGAATTGTTTTTACTG+AGG - chr3_2:76623333-76623352 Msa0426240:intron 20.0%
!! GGTATCAAAATATTTAAATG+TGG - chr3_2:76623730-76623749 Msa0426240:intron 20.0%
!! AATATTTAAATGTGGTATAC+AGG - chr3_2:76623738-76623757 Msa0426240:intron 20.0%
!!! TTTCTTTAGAATTTTTCATC+TGG - chr3_2:76624094-76624113 Msa0426240:CDS 20.0%
!! ATAGAATAAGTATAGATGAT+TGG + chr3_2:76624133-76624152 None:intergenic 20.0%
!! AAAAATCCATGTGTTTATAA+AGG - chr3_2:76624656-76624675 Msa0426240:intron 20.0%
!! AAAAAACCTTTATAAACACA+TGG + chr3_2:76624665-76624684 None:intergenic 20.0%
!!! TAATTTATAGAATTTGCTAC+TGG - chr3_2:76625113-76625132 Msa0426240:intron 20.0%
!! CATATTAAATTGTTCTTGTT+AGG + chr3_2:76625163-76625182 None:intergenic 20.0%
! TCAATCATCACAAATATTTG+AGG + chr3_2:76622826-76622845 None:intergenic 25.0%
! TATTTGTGATGATTGAAAAC+AGG - chr3_2:76622830-76622849 Msa0426240:intron 25.0%
!!! CTGCTTATTTGTTTTGATTA+AGG - chr3_2:76622965-76622984 Msa0426240:intron 25.0%
! GTGTTCTACATTTCTATTAT+TGG - chr3_2:76622999-76623018 Msa0426240:intron 25.0%
! AATTTGTATGAAAAGAGACT+TGG - chr3_2:76623087-76623106 Msa0426240:intron 25.0%
!! ATTTTGCTAAAATATCCCTT+TGG - chr3_2:76623182-76623201 Msa0426240:intron 25.0%
! TAATGTATTAAATTGGGCAA+AGG - chr3_2:76623265-76623284 Msa0426240:intron 25.0%
! AATGTATTAAATTGGGCAAA+GGG - chr3_2:76623266-76623285 Msa0426240:intron 25.0%
!!! GAAAAATGCTTTTAGAGTTT+AGG - chr3_2:76623355-76623374 Msa0426240:CDS 25.0%
!! TAGTCTTTCCATTTTCAAAA+TGG - chr3_2:76623615-76623634 Msa0426240:CDS 25.0%
! TTAAAATTTCATCTTGTTGC+AGG - chr3_2:76623785-76623804 Msa0426240:intron 25.0%
!!! TATGTGCTGTTGATTTTATT+TGG - chr3_2:76624199-76624218 Msa0426240:intron 25.0%
!! AGTAATTTTCGATATTTGTC+AGG + chr3_2:76624234-76624253 None:intergenic 25.0%
! GAAAATTACTAAAAGCAAGT+TGG - chr3_2:76624244-76624263 Msa0426240:intron 25.0%
!! ATGACTTTTACATGTCTATA+AGG - chr3_2:76624342-76624361 Msa0426240:intron 25.0%
!! TTTTACATGTCTATAAGGTT+AGG - chr3_2:76624347-76624366 Msa0426240:intron 25.0%
! TCTTGACTATAAAGAATTTC+TGG - chr3_2:76624791-76624810 Msa0426240:intron 25.0%
! CAATTTAATATGTCTATGCA+TGG - chr3_2:76625171-76625190 Msa0426240:intron 25.0%
! GTTTAAAAATTGTCATTCAG+TGG - chr3_2:76625193-76625212 Msa0426240:CDS 25.0%
!!! TTTTTGTTTCTTTTGAGCAA+TGG - chr3_2:76625239-76625258 Msa0426240:CDS 25.0%
!!! ATAGCTTGTTTGTTAAATCA+TGG - chr3_2:76625292-76625311 Msa0426240:intron 25.0%
! TTTTGAACGTAGAATGAGAA+CGG - chr3_2:76622589-76622608 Msa0426240:CDS 30.0%
TCATTGATGCGTTTGTAAAT+AGG + chr3_2:76622737-76622756 None:intergenic 30.0%
GGAATCATAGGATATTAGAT+TGG - chr3_2:76622898-76622917 Msa0426240:intron 30.0%
GTCTTCTATTATTTGTCTTC+AGG - chr3_2:76622935-76622954 Msa0426240:intron 30.0%
TACATTTCTATTATTGGCCA+AGG - chr3_2:76623005-76623024 Msa0426240:intron 30.0%
ACATTTCTATTATTGGCCAA+GGG - chr3_2:76623006-76623025 Msa0426240:intron 30.0%
CTAATGTGTTGAATTTGTGA+AGG - chr3_2:76623035-76623054 Msa0426240:intron 30.0%
! TTGAATTTGTGAAGGAGTTT+TGG - chr3_2:76623043-76623062 Msa0426240:intron 30.0%
! TGAATTTGTGAAGGAGTTTT+GGG - chr3_2:76623044-76623063 Msa0426240:intron 30.0%
! GGTTATGTTAGTTTCAAACT+TGG - chr3_2:76623117-76623136 Msa0426240:intron 30.0%
! ATGTTAGTTTCAAACTTGGA+AGG - chr3_2:76623121-76623140 Msa0426240:intron 30.0%
!!! GGGATATTTTAGCAAAATTG+AGG + chr3_2:76623180-76623199 None:intergenic 30.0%
ATGAATTTGTGACAACCAAA+GGG + chr3_2:76623200-76623219 None:intergenic 30.0%
TATTACAAATCCATAACGTC+CGG + chr3_2:76623247-76623266 None:intergenic 30.0%
ATGTATTAAATTGGGCAAAG+GGG - chr3_2:76623267-76623286 Msa0426240:intron 30.0%
TTATATGTCAAGGGTTACAT+TGG + chr3_2:76623384-76623403 None:intergenic 30.0%
! TTCTGGTTGTTATATGTCAA+GGG + chr3_2:76623393-76623412 None:intergenic 30.0%
! ATTCTGGTTGTTATATGTCA+AGG + chr3_2:76623394-76623413 None:intergenic 30.0%
!! GCTTTTGGAAAATGTAATTC+TGG + chr3_2:76623410-76623429 None:intergenic 30.0%
TTCTGATATAGTGTTATCCT+TGG - chr3_2:76623475-76623494 Msa0426240:intron 30.0%
TCTGATATAGTGTTATCCTT+GGG - chr3_2:76623476-76623495 Msa0426240:intron 30.0%
! TCTTTTAATAGCAGTGCAAA+CGG - chr3_2:76623511-76623530 Msa0426240:intron 30.0%
! ATGAAATTTTAAGCTAAGCC+TGG + chr3_2:76623777-76623796 None:intergenic 30.0%
TGTAAAAGTCATAACGAAGA+TGG + chr3_2:76624334-76624353 None:intergenic 30.0%
CGTAATACAATCTTCATTCT+CGG + chr3_2:76624541-76624560 None:intergenic 30.0%
GAAGATTGTATTACGTATTC+TGG - chr3_2:76624546-76624565 Msa0426240:CDS 30.0%
TCTTTGCAGCTCAATTTAAT+TGG - chr3_2:76624696-76624715 Msa0426240:intron 30.0%
! GCGTAGATATAATTTTTCTG+AGG + chr3_2:76624924-76624943 None:intergenic 30.0%
CAAAACATGTCACATGTAAT+TGG - chr3_2:76625013-76625032 Msa0426240:CDS 30.0%
GCAGTTTATGTCTAGTTAAA+TGG + chr3_2:76625066-76625085 None:intergenic 30.0%
TTAGGTCACTCATGATTAAA+TGG + chr3_2:76625145-76625164 None:intergenic 30.0%
GGTGTAAAATTTGTATAGAG+TGG - chr3_2:76625214-76625233 Msa0426240:CDS 30.0%
TTTGAACGTAGAATGAGAAC+GGG - chr3_2:76622590-76622609 Msa0426240:CDS 35.0%
!! TGGTGGATTAGTATCGTTTA+AGG + chr3_2:76622675-76622694 None:intergenic 35.0%
AGGAGCAAGAATGTTAAAAG+TGG + chr3_2:76622717-76622736 None:intergenic 35.0%
TTACAAACGCATCAATGATG+AGG - chr3_2:76622739-76622758 Msa0426240:CDS 35.0%
AGAGTGACTATAGAGCATAT+TGG - chr3_2:76622868-76622887 Msa0426240:intron 35.0%
TGACTATAGAGCATATTGGT+TGG - chr3_2:76622872-76622891 Msa0426240:intron 35.0%
GATGAATTTGTGACAACCAA+AGG + chr3_2:76623201-76623220 None:intergenic 35.0%
! TGTCATCATATTTTTCACGC+CGG - chr3_2:76623225-76623244 Msa0426240:intron 35.0%
TGTATTAAATTGGGCAAAGG+GGG - chr3_2:76623268-76623287 Msa0426240:intron 35.0%
!! CCTAAACAAAAGCATGCTTT+TGG + chr3_2:76623425-76623444 None:intergenic 35.0%
!! CCAAAAGCATGCTTTTGTTT+AGG - chr3_2:76623422-76623441 Msa0426240:CDS 35.0%
TTATCCTTGGGTTACATAAC+AGG - chr3_2:76623488-76623507 Msa0426240:intron 35.0%
! CCATTTTCAAAATGGCGAAA+CGG - chr3_2:76623623-76623642 Msa0426240:CDS 35.0%
ATCTCTTGTACGATTGAAAC+AGG - chr3_2:76623709-76623728 Msa0426240:intron 35.0%
!!! ACAGGCATTTTTTAATGACC+AGG - chr3_2:76623756-76623775 Msa0426240:intron 35.0%
! ACAGTTTATTTCTCAGTGAC+TGG - chr3_2:76623954-76623973 Msa0426240:CDS 35.0%
! TTATTTCTCAGTGACTGGAA+TGG - chr3_2:76623959-76623978 Msa0426240:CDS 35.0%
GACATGTTTACAAATTCCTG+AGG - chr3_2:76623993-76624012 Msa0426240:intron 35.0%
TCTATATAATGTCGATGCAG+TGG - chr3_2:76624148-76624167 Msa0426240:CDS 35.0%
CTATATAATGTCGATGCAGT+GGG - chr3_2:76624149-76624168 Msa0426240:CDS 35.0%
ATATATTTCCCCGATGATTG+CGG + chr3_2:76624182-76624201 None:intergenic 35.0%
AGTAGTATAGGAAACACATG+TGG + chr3_2:76624373-76624392 None:intergenic 35.0%
!! ATAGTGGACATCATTGTAGA+CGG + chr3_2:76624401-76624420 None:intergenic 35.0%
AACTAAAGATTGCACCATAG+TGG + chr3_2:76624417-76624436 None:intergenic 35.0%
TGATGCATTCGCATTTCTAA+GGG - chr3_2:76624515-76624534 Msa0426240:CDS 35.0%
AGATAAGCATGTGCGTTAAA+TGG + chr3_2:76624635-76624654 None:intergenic 35.0%
ATTGAGTGCTTATCTCTACA+AGG - chr3_2:76624977-76624996 Msa0426240:intron 35.0%
! ATCATGGTCTTGAAATTACG+TGG - chr3_2:76625308-76625327 Msa0426240:intron 35.0%
AAGAGACGACAACAAGAATA+AGG - chr3_2:76625369-76625388 Msa0426240:intron 35.0%
GACGTTCAAGAACAAACAAT+TGG - chr3_2:76625412-76625431 Msa0426240:CDS 35.0%
TAGAATGAGAACGGGTAAGT+GGG - chr3_2:76622598-76622617 Msa0426240:CDS 40.0%
AAAGCATGGGAAGGATTTCA+AGG - chr3_2:76622624-76622643 Msa0426240:CDS 40.0%
ATGGGAAGGATTTCAAGGAT+TGG - chr3_2:76622629-76622648 Msa0426240:CDS 40.0%
AAAGTGGTGCAAGTAATGCA+AGG + chr3_2:76622701-76622720 None:intergenic 40.0%
! ATAGAGCATATTGGTTGGCA+AGG - chr3_2:76622877-76622896 Msa0426240:intron 40.0%
ATTGGTTGGCAAGGAATCAT+AGG - chr3_2:76622886-76622905 Msa0426240:intron 40.0%
!!! TTTGTGAAGGAGTTTTGGGT+AGG - chr3_2:76623048-76623067 Msa0426240:intron 40.0%
AAGACCTGTTATGTAACCCA+AGG + chr3_2:76623495-76623514 None:intergenic 40.0%
GAGTTGCACTTCAACGATAT+TGG - chr3_2:76623560-76623579 Msa0426240:CDS 40.0%
!! CCGTTTCGCCATTTTGAAAA+TGG + chr3_2:76623626-76623645 None:intergenic 40.0%
AATGGCGAAACGGTGAAATT+AGG - chr3_2:76623633-76623652 Msa0426240:CDS 40.0%
ATCGTGAGGAAATAGAAGGT+GGG + chr3_2:76623681-76623700 None:intergenic 40.0%
TTGCATCGTGAGGAAATAGA+AGG + chr3_2:76623685-76623704 None:intergenic 40.0%
AATTACCCGCATAGCATGAT+TGG + chr3_2:76623870-76623889 None:intergenic 40.0%
GTAAGACGATACAAAACCCT+GGG + chr3_2:76624020-76624039 None:intergenic 40.0%
AGTTGGAGTGAAGCAGTATT+TGG - chr3_2:76624261-76624280 Msa0426240:intron 40.0%
AGCAGTATTTGGCATGTTCA+AGG - chr3_2:76624272-76624291 Msa0426240:CDS 40.0%
TAGACGGTTCACAGTAGTAT+AGG + chr3_2:76624385-76624404 None:intergenic 40.0%
GTCTACAATGATGTCCACTA+TGG - chr3_2:76624400-76624419 Msa0426240:intron 40.0%
! TGGTGCAATCTTTAGTTTCG+TGG - chr3_2:76624420-76624439 Msa0426240:CDS 40.0%
GTGATGCATTCGCATTTCTA+AGG - chr3_2:76624514-76624533 Msa0426240:CDS 40.0%
! TCATTCTCATGAGTTGAGTG+AGG - chr3_2:76624719-76624738 Msa0426240:intron 40.0%
GTTGAGTGAGGAAGAGATAA+AGG - chr3_2:76624731-76624750 Msa0426240:intron 40.0%
AGGAAGAGATAAAGGAGTTG+TGG - chr3_2:76624739-76624758 Msa0426240:intron 40.0%
GGAAGAGATAAAGGAGTTGT+GGG - chr3_2:76624740-76624759 Msa0426240:intron 40.0%
CATTTCCATCTATGTCAGCT+TGG + chr3_2:76624767-76624786 None:intergenic 40.0%
CAAGCTGACATAGATGGAAA+TGG - chr3_2:76624765-76624784 Msa0426240:intron 40.0%
TCTACGCAATCAATGACTAG+AGG - chr3_2:76624937-76624956 Msa0426240:intron 40.0%
AAGAATAAGGAGCAGGAAGA+TGG - chr3_2:76625382-76625401 Msa0426240:intron 40.0%
AAGTCGAGCATGATCAGAAA+GGG + chr3_2:76625506-76625525 None:intergenic 40.0%
TAAGTCGAGCATGATCAGAA+AGG + chr3_2:76625507-76625526 None:intergenic 40.0%
GTAGAATGAGAACGGGTAAG+TGG - chr3_2:76622597-76622616 Msa0426240:CDS 45.0%
! GGTAAGTGGGCAAAAAGCAT+GGG - chr3_2:76622611-76622630 Msa0426240:CDS 45.0%
CAAGTAATGCAAGGTTGTGG+TGG + chr3_2:76622692-76622711 None:intergenic 45.0%
GTGCAAGTAATGCAAGGTTG+TGG + chr3_2:76622695-76622714 None:intergenic 45.0%
AGTCACTCTCTCGACAAGTT+GGG + chr3_2:76622857-76622876 None:intergenic 45.0%
TAGTCACTCTCTCGACAAGT+TGG + chr3_2:76622858-76622877 None:intergenic 45.0%
CTATTATTGGCCAAGGGTGA+AGG - chr3_2:76623012-76623031 Msa0426240:intron 45.0%
!! AACACATTAGCCTTCACCCT+TGG + chr3_2:76623025-76623044 None:intergenic 45.0%
GAAAAGAGACTTGGAGATGC+TGG - chr3_2:76623096-76623115 Msa0426240:intron 45.0%
! ATTTTTCACGCCGGACGTTA+TGG - chr3_2:76623234-76623253 Msa0426240:intron 45.0%
CATCGTGAGGAAATAGAAGG+TGG + chr3_2:76623682-76623701 None:intergenic 45.0%
!! TGATTGGCATTGGCTTGAGT+TGG + chr3_2:76623854-76623873 None:intergenic 45.0%
CCAATGCCAATCATGCTATG+CGG - chr3_2:76623861-76623880 Msa0426240:CDS 45.0%
CAATGCCAATCATGCTATGC+GGG - chr3_2:76623862-76623881 Msa0426240:CDS 45.0%
GCGGGTAATTCAACTCGATA+TGG - chr3_2:76623880-76623899 Msa0426240:CDS 45.0%
TTACAAATTCCTGAGGTCCC+AGG - chr3_2:76624000-76624019 Msa0426240:intron 45.0%
TACAAATTCCTGAGGTCCCA+GGG - chr3_2:76624001-76624020 Msa0426240:intron 45.0%
CGTAAGACGATACAAAACCC+TGG + chr3_2:76624021-76624040 None:intergenic 45.0%
! TTTCTGTGAAGCACTTCGAC+AGG - chr3_2:76624569-76624588 Msa0426240:CDS 45.0%
CGACAACAAGAATAAGGAGC+AGG - chr3_2:76625375-76625394 Msa0426240:intron 45.0%
TCAGAAAGGGAGTAGTCTTC+CGG + chr3_2:76625493-76625512 None:intergenic 45.0%
GGGTAAGTGGGCAAAAAGCA+TGG - chr3_2:76622610-76622629 Msa0426240:CDS 50.0%
! AGTGGGCAAAAAGCATGGGA+AGG - chr3_2:76622615-76622634 Msa0426240:CDS 50.0%
GCGAAACGGTGAAATTAGGC+AGG - chr3_2:76623637-76623656 Msa0426240:CDS 50.0%
AGAGATAGCGTTGCATCGTG+AGG + chr3_2:76623695-76623714 None:intergenic 50.0%
CCGCATAGCATGATTGGCAT+TGG + chr3_2:76623864-76623883 None:intergenic 50.0%
ATACAAAACCCTGGGACCTC+AGG + chr3_2:76624012-76624031 None:intergenic 50.0%
CACTGATGCAGATGCTGACA+AGG - chr3_2:76624057-76624076 Msa0426240:intron 50.0%
!! GGGTTAGTCACCGCAATCAT+CGG - chr3_2:76624169-76624188 Msa0426240:CDS 50.0%
! GGTTAGTCACCGCAATCATC+GGG - chr3_2:76624170-76624189 Msa0426240:intron 50.0%
GTTAGTCACCGCAATCATCG+GGG - chr3_2:76624171-76624190 Msa0426240:intron 50.0%
TGGGTCCAAGCTGACATAGA+TGG - chr3_2:76624759-76624778 Msa0426240:intron 50.0%
AGCAGACAAGCTTGTCTTGC+AGG + chr3_2:76625265-76625284 None:intergenic 50.0%
CGTGGTTGCAGCAGCAAATA+TGG - chr3_2:76625326-76625345 Msa0426240:intron 50.0%
!!! TGCAGTTTTGTTCCCTCCTG+AGG - chr3_2:76625450-76625469 Msa0426240:CDS 50.0%
!!! AGTTTTGTTCCCTCCTGAGG+TGG - chr3_2:76625453-76625472 Msa0426240:CDS 50.0%
TACCTTTCTCCACCTCAGGA+GGG + chr3_2:76625465-76625484 None:intergenic 50.0%
CATCTACCTTTCTCCACCTC+AGG + chr3_2:76625469-76625488 None:intergenic 50.0%
CTGAGGTGGAGAAAGGTAGA+TGG - chr3_2:76625467-76625486 Msa0426240:CDS 50.0%
! TGGGAGCACGGCATTCTTAT+CGG + chr3_2:76625544-76625563 None:intergenic 50.0%
CAGCAAATCATCTGGGAGCA+CGG + chr3_2:76625556-76625575 None:intergenic 50.0%
CTTGGAAGGACGAACAACCG+TGG - chr3_2:76623135-76623154 Msa0426240:intron 55.0%
AGGACGAACAACCGTGGAGA+TGG - chr3_2:76623141-76623160 Msa0426240:intron 55.0%
GAACGCGCATACCATCTCCA+CGG + chr3_2:76623155-76623174 None:intergenic 55.0%
GACTGGAATGGAAGCAAGCG+TGG - chr3_2:76623971-76623990 Msa0426240:intron 55.0%
TTCCCTCCTGAGGTGGAGAA+AGG - chr3_2:76625460-76625479 Msa0426240:CDS 55.0%
CTACCTTTCTCCACCTCAGG+AGG + chr3_2:76625466-76625485 None:intergenic 55.0%
GGTGGAGAAAGGTAGATGGC+CGG - chr3_2:76625471-76625490 Msa0426240:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 76622570 76625576 76622570 ID=Msa0426240;Name=Msa0426240
chr3_2 mRNA 76622570 76625576 76622570 ID=Msa0426240-mRNA-1;Parent=Msa0426240;Name=Msa0426240-mRNA-1;_AED=0.13;_eAED=0.13;_QI=32|0.77|0.5|1|1|1|10|0|456
chr3_2 exon 76622570 76622809 76622570 ID=Msa0426240-mRNA-1:exon:19854;Parent=Msa0426240-mRNA-1
chr3_2 exon 76623334 76623441 76623334 ID=Msa0426240-mRNA-1:exon:19853;Parent=Msa0426240-mRNA-1
chr3_2 exon 76623556 76623663 76623556 ID=Msa0426240-mRNA-1:exon:19852;Parent=Msa0426240-mRNA-1
chr3_2 exon 76623853 76623978 76623853 ID=Msa0426240-mRNA-1:exon:19851;Parent=Msa0426240-mRNA-1
chr3_2 exon 76624068 76624188 76624068 ID=Msa0426240-mRNA-1:exon:19850;Parent=Msa0426240-mRNA-1
chr3_2 exon 76624263 76624339 76624263 ID=Msa0426240-mRNA-1:exon:19849;Parent=Msa0426240-mRNA-1
chr3_2 exon 76624416 76624636 76624416 ID=Msa0426240-mRNA-1:exon:19848;Parent=Msa0426240-mRNA-1
chr3_2 exon 76624984 76625089 76624984 ID=Msa0426240-mRNA-1:exon:19847;Parent=Msa0426240-mRNA-1
chr3_2 exon 76625190 76625294 76625190 ID=Msa0426240-mRNA-1:exon:19846;Parent=Msa0426240-mRNA-1
chr3_2 exon 76625386 76625576 76625386 ID=Msa0426240-mRNA-1:exon:19845;Parent=Msa0426240-mRNA-1
chr3_2 five_prime_UTR 76625545 76625576 76625545 ID=Msa0426240-mRNA-1:five_prime_utr;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76625386 76625544 76625386 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76625190 76625294 76625190 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76624984 76625089 76624984 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76624416 76624636 76624416 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76624263 76624339 76624263 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76624068 76624188 76624068 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76623853 76623978 76623853 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76623556 76623663 76623556 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76623334 76623441 76623334 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
chr3_2 CDS 76622570 76622809 76622570 ID=Msa0426240-mRNA-1:cds;Parent=Msa0426240-mRNA-1
Gene Sequence

>Msa0426240

ATGAGAACGGGTAAGTGGGCAAAAAGCATGGGAAGGATTTCAAGGATTGGAAGTTTTGCAATTGCTTCTTCCTTAAACGATACTAATCCACCACAACCTTGCATTACTTGCACCACTTTTAACATTCTTGCTCCTATTTACAAACGCATCAATGATGAGGACCCAACTTGTCGAGAGAGTGACTATAGAGCATATTGGTTGGCAAGGAATCATAGGATATTAGATTGGCTTTTGAATGAAAAGTCTTCTATTATTTGTCTTCAGGAGTTTTGGGTAGGAAATGAAGAGCTCGTTAATTTGTATGAAAAGAGACTTGGAGATGCTGGTTATGTTAGTTTCAAACTTGGAAGGACGAACAACCGTGGAGATGGTCTTTTAATAGCAGTGCAAACGGAATACTTTAACATTTTCAATTATAAGGAGTTGCACTTCAACGATATTGGTGATCGTGTAGCTCAACTGTTACATGTTGAACTAGTCTTTCCATTTTCAAAATGGCGAAACGGTGAAATTAGGCAGGAAATTCTTATTGTTAACACCCACCTTCTATTTCCTCACGATGCAACGCTATCTCTTGTACGATTGAAACAGGTCTATAAGATACTTCAATATGTAGAATCTTATCAAAATGACTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTTTATTTCTCAGTGACTGGAATGGAAGCAAGCGTGGACATGTTTACAAATTCCTGAGGTCCCAGGGTTTTGTATCGTCTTACGATACTGCACATCAATACACTGATGCAGATGCTGACAAGTGGGTTAGTCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAATTACTAAAAGCAAGTTGGAGTGAAGCAGTATTTGGCATGTTCAAGGATCTAGTGAGACGAGCTTCACTGACAGAAAGTGATGCATTCGCATTTCTAAGGGCCGAGAATGAAGATTGTATTACGTATTCTGGTTTCTGTGAAGCACTTCGACAGCTCAATTTAATTGGTCATTCTCATGAGTTGAGTGAGGAAGAGATAAAGGAGTTGTGGGTCCAAGCTGACATAGATGGAAATGGTGTTCTTGACTATAAAGAATTTCTGCAGCAAATATGGATTTCAACTGTTTTAGATCAAAGAGACGACAACAAGAATAAGGAGCAGGAAGATGGTTCAAATGACGTTCAAGAACAAACAATTGGTTTTAGTGTAAAAAATGCAGTTTTGTTCCCTCCTGAGGTGGAGAAAGGTAGATGGCCGGAAGACTACTCCCTTTCTGATCATGCTCGACTTACTGTTGTGTTTTCACCGATAAGAATGCCGTGCTCCCAGATGATTTGCTGA

Protein sequence

>Msa0426240

MRTGKWAKSMGRISRIGSFAIASSLNDTNPPQPCITCTTFNILAPIYKRINDEDPTCRESDYRAYWLARNHRILDWLLNEKSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQTEYFNIFNYKELHFNDIGDRVAQLLHVELVFPFSKWRNGEIRQEILIVNTHLLFPHDATLSLVRLKQVYKILQYVESYQNDFQLKPMPIMLCGLFLSDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKDLVRRASLTESDAFAFLRAENEDCITYSGFCEALRQLNLIGHSHELSEEEIKELWVQADIDGNGVLDYKEFLQQIWISTVLDQRDDNKNKEQEDGSNDVQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQMIC*