AlfalfaGEDB | Msa0021400

M. sativa cultivar zhongmu-4 / Msa0021400

KEGG: K14509
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532
PFAM: PF01590.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021400	sp\|Q0WPQ2\|ETR2_ARATH	54.003	787	311	15	1	757	1	766	0.0	786

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0021400	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011060	Msa0021400	-0.802604	5.185620e-49	-8.615850e-47
Msa0011100	Msa0021400	-0.800477	1.415244e-48	-8.615850e-47
Msa0016380	Msa0021400	-0.804543	2.054144e-49	-8.615850e-47
Msa0021240	Msa0021400	-0.826324	2.887134e-54	-8.615850e-47
Msa0021400	Msa0024950	0.821432	4.049519e-53	-8.615850e-47
Msa0021400	Msa0027030	-0.804671	1.931256e-49	-8.615850e-47
Msa0021400	Msa0029700	0.871901	4.799012e-67	-8.615850e-47
Msa0021400	Msa0030760	-0.830171	3.411790e-55	-8.615850e-47
Msa0021400	Msa0034100	-0.811318	7.434080e-51	-8.615850e-47
Msa0021400	Msa0036550	0.812174	4.841710e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021400	MtrunA17_Chr1g0168161	95.784	759	32	0	1	759	1	759	0.0	1443
Msa0021400	MtrunA17_Chr1g0186431	71.560	763	209	7	1	760	1	758	0.0	1095
Msa0021400	MtrunA17_Chr7g0274831	53.877	748	330	8	15	757	21	758	0.0	818
Msa0021400	MtrunA17_Chr1g0190021	53.146	747	333	8	19	757	18	755	0.0	781
Msa0021400	MtrunA17_Chr4g0013831	37.787	741	439	14	28	758	5	733	7.37e-156	471
Msa0021400	MtrunA17_Chr7g0269631	39.410	576	322	10	28	589	5	567	5.18e-116	364
Msa0021400	MtrunA17_Chr4g0077091	64.865	74	24	2	689	760	1	74	2.46e-23	94.4
Msa0021400	MtrunA17_Chr8g0377481	31.579	133	81	3	633	757	837	967	2.12e-13	74.3
Msa0021400	MtrunA17_Chr3g0122391	29.333	150	94	4	619	760	882	1027	4.36e-12	70.1
Msa0021400	MtrunA17_Chr3g0122391	21.444	471	309	14	343	760	419	881	1.52e-11	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021400	AT3G23150.1	54.003	787	311	15	1	757	1	766	0.0	786
Msa0021400	AT3G04580.2	51.743	746	345	10	23	758	22	762	0.0	739
Msa0021400	AT3G04580.1	51.743	746	345	10	23	758	22	762	0.0	739
Msa0021400	AT3G23150.2	56.106	606	226	11	1	583	1	589	0.0	624
Msa0021400	AT1G04310.1	48.243	626	287	10	10	613	12	622	4.72e-180	530
Msa0021400	AT1G04310.2	48.243	626	287	10	10	613	12	622	4.72e-180	530
Msa0021400	AT1G66340.1	37.685	743	435	15	28	758	4	730	6.16e-155	468
Msa0021400	AT2G40940.1	41.416	466	267	5	42	503	17	480	2.34e-110	348
Msa0021400	AT1G27320.1	23.230	452	297	13	342	757	428	865	1.72e-13	75.1
Msa0021400	AT5G35750.1	33.835	133	64	3	633	744	1031	1160	3.95e-12	70.5

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Find 185 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCATGAGTAATGGAAT+GGG	0.532334	1_1:+38137886	Msa0021400:CDS
AAATCGCCAACACTAAGCAT+TGG	0.554872	1_1:-38137601	None:intergenic
AACCTCACTCATGAATTGAA+TGG	0.471461	1_1:+38137424	Msa0021400:CDS
AACTCATGACCCTTGCTCTT+CGG	0.399844	1_1:+38139081	Msa0021400:CDS
AACTTGATAGATGGTAACAA+TGG	0.531282	1_1:+38138255	Msa0021400:CDS
AAGATTAAGGCATTCGAATC+CGG	0.430168	1_1:-38139285	None:intergenic
AAGCCTCTCTGAAGTAACTG+AGG	0.686516	1_1:-38138430	None:intergenic
AAGCGAAAGGCGAGGGAGCT+TGG	0.417170	1_1:+38137217	Msa0021400:CDS
AAGCTCAGAAGAAGAATTGC+GGG	0.444376	1_1:+38139445	Msa0021400:CDS
AAGGATGTGTACGAGTGACC+GGG	0.595446	1_1:+38138458	Msa0021400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCAAACATTCCATTCAAAT+GGG	+	chr1_1:38136988-38137007	Msa0021400:CDS	30.0%
ATTGCTTTCATTGTACTTTG+TGG	+	chr1_1:38137025-38137044	Msa0021400:CDS	30.0%
TGACACATTTGTTTAATAGC+TGG	+	chr1_1:38137050-38137069	Msa0021400:CDS	30.0%
TTGTTTAATAGCTGGACTTA+TGG	+	chr1_1:38137058-38137077	Msa0021400:CDS	30.0%
ATAATGAAACAGAATGAAGC+TGG	+	chr1_1:38137256-38137275	Msa0021400:CDS	30.0%
TTAAACTGTCGGAAACTTTA+GGG	+	chr1_1:38137353-38137372	Msa0021400:CDS	30.0%
TATTAAAGTTGTTGCTGATC+AGG	+	chr1_1:38137726-38137745	Msa0021400:CDS	30.0%
TTTCAGAAAGTCATGAGTAA+TGG	+	chr1_1:38137880-38137899	Msa0021400:CDS	30.0%
GAATGAACAGAAACTTATTG+TGG	+	chr1_1:38137966-38137985	Msa0021400:CDS	30.0%
AACTTGATAGATGGTAACAA+TGG	+	chr1_1:38138255-38138274	Msa0021400:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	38136779	38139680	38136779	ID=Msa0021400;Name=Msa0021400
chr1_1	mRNA	38136779	38139680	38136779	ID=Msa0021400-mRNA-1;Parent=Msa0021400;Name=Msa0021400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|1\|0.5\|1\|1\|1\|2\|115\|760
chr1_1	exon	38136779	38138527	38136779	ID=Msa0021400-mRNA-1:exon:11836;Parent=Msa0021400-mRNA-1
chr1_1	exon	38139032	38139680	38139032	ID=Msa0021400-mRNA-1:exon:11837;Parent=Msa0021400-mRNA-1
chr1_1	CDS	38136779	38138527	38136779	ID=Msa0021400-mRNA-1:cds;Parent=Msa0021400-mRNA-1
chr1_1	CDS	38139032	38139565	38139032	ID=Msa0021400-mRNA-1:cds;Parent=Msa0021400-mRNA-1
chr1_1	three_prime_UTR	38139566	38139680	38139566	ID=Msa0021400-mRNA-1:three_prime_utr;Parent=Msa0021400-mRNA-1

Gene Sequence

>Msa0021400

ATGTATAAAGCAACAGCATCTGGATTCTTAATTTTCCTGCTCTTATTGGGTGTATCTGCAACTGCTAATGGATTTTCCAAATGCAACTGTGACGATGACACGAGCTGGTGGACGATTGAGAAGATTCTAGAATGGCAGAAAGTTGGCGATTTTCTGATTGCGGTGGCGTACTTCTCGATCCCTATTGAGCTTCTTTATTTCATCAGTTGTGCAAACATTCCATTCAAATGGGTACTTTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTTAATAGCTGGACTTATGGACCCCACACGTTTCAAATCATGCTGACTCTGACTGTCTTGAAAGTCCTCACTGCATTGGTTTCATGTGCAACTACCATAACCCTCATCACTTTGATCCCTATGCTTCTTAAAGTAAAGGTTCGAGAGTTCTTGCTGAAGCGAAAGGCGAGGGAGCTTGGAATTGAGTATGGTATGATAATGAAACAGAATGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCGCTCGATAGACATGAGATTTTGTATACTACCTTGGTTAAACTGTCGGAAACTTTAGGGTTGCAGAACTGTGCTGTGTGGATGCCTAATGTTGATAAAACGGCGATGAACCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATACCGATCACTGATCCGGATGTTGTAAGAGTCAAGGGAGATAAGGTAGTGCATATGATTGATTCTGACTCGCTGCTTGCTGCTGCGAGTAGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCGATCCGAATGCCAATGCTTAGTGTTGGCGATTTCAAAGGGGGGACGCCTGAGGTAACGGAGGCCTGTTACGCGATACTTGTTTTGGTACTTCCTAATGAAGAGGCTAGATCTTGGAGCAATCAAGAGCTTGAGATTATTAAAGTTGTTGCTGATCAGGTAGCCGTGGGTCTTTCTCATGCCGCAATTCTAGAAGAATCGCAACTTATGAGAGAGAAATTGGAGGAGCGAAATCGAGCATTGCAACAGGAGAAAAGGAACGCTATGATGGCGAGTGAGGCTAGAGCGGTTTTTCAGAAAGTCATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGATTGCTTTCAATGATGCAAGATGAGAATTTGAAGAATGAACAGAAACTTATTGTGGATTCGATGGTAAGGACAAGCGGTGTCGTATCGAACTTGATGAATGATGCTATGGACAATTCAGATAGGGACGGTGGAGGTGGAAGATTTCCTTTGGAGATGAAATGTTTTGGTTTACATAACATGTTAAAACAAGCAGCTTGCATCGCCAAGTCTATGGCTTTATGCAAGGGTTTTGGATTTAAGGTTGAGGTTGATAGGTCTTTGCCTAACTATATTATCGGTGACGAGAAGAGGGTTTTTCAGGTGATTTTGCACATGGTTAGGAACTTGATAGATGGTAACAATGGGGGAGGGATTCTTGTGTTTCAAGTTTTGGCGGAATCTGGAAGTCGAGGAAGGATTGAACATGGATATGCAACTTGGAGACCAAGCTCGTCTAACGGTGATGTGCATGTTAGATTTGACATAGGTATCAATAGCAGTAACTCTGAATCAGAGACCTCAGTTACTTCAGAGAGGCTTGCAGGAAGGATGTGTACGAGTGACCGGGCATTCGAGGAAAGTTTGAGCTTCAGCATATGCAAGAAGATAATCCAGTCAATGAAAGGTAACATATGTTCAGTACCAAATGCTAGAGGCTTTCCTCAACTCATGACCCTTGCTCTTCGGTTTCAACTACGCTGTTCTACCGCGGTAACCATCCCCGAACCAGGGGAGAGTTCAGAGTCATCTGATCAAAATTCCTTGTTCAGAGGTCTGCAAGTCTTGTTGGCCGACAGCGACAATGTTAATAGAGCAGTAACACAGAAATTTCTCCAGAAACTAGGATGTATTGTTACATCTGTTTCTTCCGGATTCGAATGCCTTAATCTTGTTGGCCATGCTGGTGCATGCCCCTTTGAAGTTATTCTTTTGGACCTTAACTTGCCTGATTTAGATGGATTTGAAGTTACCGCAAGGATCCGGAAGTTCAAAAGCCGTAACTGGCCTATCGCTGTTGCTTTAACGGCAAGCTCAGAAGAAGAATTGCGGGAAAAATGTATGCATATTGGGTTTAATGGAGTTATCCGAAAGCCAATTCTGTTGCAAGGATTCGCCGGAGAACTCCAAAAAATCCTGAAGGGAAATTAG

Protein sequence

>Msa0021400

MYKATASGFLIFLLLLGVSATANGFSKCNCDDDTSWWTIEKILEWQKVGDFLIAVAYFSIPIELLYFISCANIPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMLTLTVLKVLTALVSCATTITLITLIPMLLKVKVREFLLKRKARELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHEILYTTLVKLSETLGLQNCAVWMPNVDKTAMNLTHELNGRNVNSSIPITDPDVVRVKGDKVVHMIDSDSLLAAASSGVSVDAGPVAAIRMPMLSVGDFKGGTPEVTEACYAILVLVLPNEEARSWSNQELEIIKVVADQVAVGLSHAAILEESQLMREKLEERNRALQQEKRNAMMASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDENLKNEQKLIVDSMVRTSGVVSNLMNDAMDNSDRDGGGGRFPLEMKCFGLHNMLKQAACIAKSMALCKGFGFKVEVDRSLPNYIIGDEKRVFQVILHMVRNLIDGNNGGGILVFQVLAESGSRGRIEHGYATWRPSSSNGDVHVRFDIGINSSNSESETSVTSERLAGRMCTSDRAFEESLSFSICKKIIQSMKGNICSVPNARGFPQLMTLALRFQLRCSTAVTIPEPGESSESSDQNSLFRGLQVLLADSDNVNRAVTQKFLQKLGCIVTSVSSGFECLNLVGHAGACPFEVILLDLNLPDLDGFEVTARIRKFKSRNWPIAVALTASSEEELREKCMHIGFNGVIRKPILLQGFAGELQKILKGN*