AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021400 MtrunA17_Chr1g0168161 95.784 759 32 0 1 759 1 759 0.0 1443
Msa0021400 MtrunA17_Chr1g0186431 71.560 763 209 7 1 760 1 758 0.0 1095
Msa0021400 MtrunA17_Chr7g0274831 53.877 748 330 8 15 757 21 758 0.0 818
Msa0021400 MtrunA17_Chr1g0190021 53.146 747 333 8 19 757 18 755 0.0 781
Msa0021400 MtrunA17_Chr4g0013831 37.787 741 439 14 28 758 5 733 7.37e-156 471
Msa0021400 MtrunA17_Chr7g0269631 39.410 576 322 10 28 589 5 567 5.18e-116 364
Msa0021400 MtrunA17_Chr4g0077091 64.865 74 24 2 689 760 1 74 2.46e-23 94.4
Msa0021400 MtrunA17_Chr8g0377481 31.579 133 81 3 633 757 837 967 2.12e-13 74.3
Msa0021400 MtrunA17_Chr3g0122391 29.333 150 94 4 619 760 882 1027 4.36e-12 70.1
Msa0021400 MtrunA17_Chr3g0122391 21.444 471 309 14 343 760 419 881 1.52e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021400 AT3G23150.1 54.003 787 311 15 1 757 1 766 0.0 786
Msa0021400 AT3G04580.2 51.743 746 345 10 23 758 22 762 0.0 739
Msa0021400 AT3G04580.1 51.743 746 345 10 23 758 22 762 0.0 739
Msa0021400 AT3G23150.2 56.106 606 226 11 1 583 1 589 0.0 624
Msa0021400 AT1G04310.1 48.243 626 287 10 10 613 12 622 4.72e-180 530
Msa0021400 AT1G04310.2 48.243 626 287 10 10 613 12 622 4.72e-180 530
Msa0021400 AT1G66340.1 37.685 743 435 15 28 758 4 730 6.16e-155 468
Msa0021400 AT2G40940.1 41.416 466 267 5 42 503 17 480 2.34e-110 348
Msa0021400 AT1G27320.1 23.230 452 297 13 342 757 428 865 1.72e-13 75.1
Msa0021400 AT5G35750.1 33.835 133 64 3 633 744 1031 1160 3.95e-12 70.5

Find 185 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATGCATATTGGGTTTAA+TGG 0.188176 1_1:+38139473 Msa0021400:CDS
GTTAAACTGTCGGAAACTTT+AGG 0.198346 1_1:+38137352 Msa0021400:CDS
CCCCTTTGAAGTTATTCTTT+TGG 0.208877 1_1:+38139328 Msa0021400:CDS
ATGGCTTTATGCAAGGGTTT+TGG 0.236524 1_1:+38138144 Msa0021400:CDS
TTGTTTAATAGCTGGACTTA+TGG 0.240419 1_1:+38137058 Msa0021400:CDS
ATGAAATAAAGAAGCTCAAT+AGG 0.260762 1_1:-38136959 None:intergenic
GCAACTTATGAGAGAGAAAT+TGG 0.272205 1_1:+38137789 Msa0021400:CDS
TAACAATACATCCTAGTTTC+TGG 0.278898 1_1:-38139250 None:intergenic
TCTGAACTCTCCCCTGGTTC+GGG 0.291012 1_1:-38139137 None:intergenic
TTAAACTGTCGGAAACTTTA+GGG 0.291922 1_1:+38137353 Msa0021400:CDS
ATTGCTTTCATTGTACTTTG+TGG 0.294523 1_1:+38137025 Msa0021400:CDS
CTTAACTTGCCTGATTTAGA+TGG 0.294640 1_1:+38139353 Msa0021400:CDS
GTTACTTCAGAGAGGCTTGC+AGG 0.301780 1_1:+38138435 Msa0021400:CDS
GATTCTTGTGTTTCAAGTTT+TGG 0.305051 1_1:+38138284 Msa0021400:CDS
CTCTGAACTCTCCCCTGGTT+CGG 0.307952 1_1:-38139138 None:intergenic
GCCTATCGCTGTTGCTTTAA+CGG 0.315525 1_1:+38139421 Msa0021400:CDS
CCTTTGGAGATGAAATGTTT+TGG 0.321337 1_1:+38138078 Msa0021400:CDS
CTGTTACGCGATACTTGTTT+TGG 0.339387 1_1:+38137654 Msa0021400:CDS
CAGCATGGCCAACAAGATTA+AGG 0.340276 1_1:-38139298 None:intergenic
GTGCAAACATTCCATTCAAA+TGG 0.340458 1_1:+38136987 Msa0021400:CDS
CAAAACAAGTATCGCGTAAC+AGG 0.352897 1_1:-38137653 None:intergenic
AGCTTGCATCGCCAAGTCTA+TGG 0.355095 1_1:+38138125 Msa0021400:CDS
ATTGTTACATCTGTTTCTTC+CGG 0.360494 1_1:+38139266 Msa0021400:CDS
AGGCCAATGCATTCAGTTAT+GGG 0.362686 1_1:+38137910 Msa0021400:CDS
TCTTTGCCTAACTATATTAT+CGG 0.368544 1_1:+38138189 Msa0021400:CDS
GCGAATCCTTGCAACAGAAT+TGG 0.368969 1_1:-38139509 None:intergenic
ATGTATAAAGCAACAGCATC+TGG 0.373228 1_1:+38136779 Msa0021400:CDS
TTCGAATGCCTTAATCTTGT+TGG 0.377583 1_1:+38139290 Msa0021400:CDS
TATTAAAGTTGTTGCTGATC+AGG 0.379034 1_1:+38137726 Msa0021400:CDS
GATTTAAGGTTGAGGTTGAT+AGG 0.383654 1_1:+38138166 Msa0021400:CDS
CTTGCAACAGAATTGGCTTT+CGG 0.388691 1_1:-38139502 None:intergenic
GGTGTATCTGCAACTGCTAA+TGG 0.389182 1_1:+38136827 Msa0021400:CDS
CAAGATCTAGCCTCTTCATT+AGG 0.389823 1_1:-38137682 None:intergenic
GTCATCGTCACAGTTGCATT+TGG 0.391968 1_1:-38136855 None:intergenic
TGAGGAAAGCCTCTAGCATT+TGG 0.394008 1_1:-38139059 None:intergenic
CTTAATCTTGTTGGCCATGC+TGG 0.394439 1_1:+38139299 Msa0021400:CDS
TGGAGGTGGAAGATTTCCTT+TGG 0.397483 1_1:+38138062 Msa0021400:CDS
AACTCATGACCCTTGCTCTT+CGG 0.399844 1_1:+38139081 Msa0021400:CDS
GGAAGTTCAAAAGCCGTAAC+TGG 0.402042 1_1:+38139399 Msa0021400:CDS
CATCTAAATCAGGCAAGTTA+AGG 0.412834 1_1:-38139352 None:intergenic
AAGGCCAATGCATTCAGTTA+TGG 0.414233 1_1:+38137909 Msa0021400:CDS
CTTGAAAGTCCTCACTGCAT+TGG 0.415305 1_1:+38137117 Msa0021400:CDS
AAGCGAAAGGCGAGGGAGCT+TGG 0.417170 1_1:+38137217 Msa0021400:CDS
ATAGGACCTAATTTCCCTTC+AGG 0.424148 1_1:-38139550 None:intergenic
CAGAGGTCTGCAAGTCTTGT+TGG 0.425682 1_1:+38139184 Msa0021400:CDS
TCCAAAAGAATAACTTCAAA+GGG 0.428364 1_1:-38139329 None:intergenic
GATCAAAGTGATGAGGGTTA+TGG 0.428611 1_1:-38137155 None:intergenic
ACTTCAAATCCATCTAAATC+AGG 0.429557 1_1:-38139362 None:intergenic
AAGATTAAGGCATTCGAATC+CGG 0.430168 1_1:-38139285 None:intergenic
TGACACATTTGTTTAATAGC+TGG 0.431512 1_1:+38137050 Msa0021400:CDS
AGGGAGCTTGGAATTGAGTA+TGG 0.435625 1_1:+38137229 Msa0021400:CDS
GAAGGATGTGTACGAGTGAC+CGG 0.443598 1_1:+38138457 Msa0021400:CDS
AAGCTCAGAAGAAGAATTGC+GGG 0.444376 1_1:+38139445 Msa0021400:CDS
CCCTATGCTTCTTAAAGTAA+AGG 0.446192 1_1:+38137177 Msa0021400:CDS
GGCATTCGGATCGCAGCAAC+CGG 0.448019 1_1:-38137580 None:intergenic
ATGCTATGGACAATTCAGAT+AGG 0.455663 1_1:+38138034 Msa0021400:CDS
CCCTTGACTCTTACAACATC+CGG 0.458403 1_1:-38137481 None:intergenic
TTCTATACCGATCACTGATC+CGG 0.461024 1_1:+38137462 Msa0021400:CDS
TGAAATAAAGAAGCTCAATA+GGG 0.466212 1_1:-38136958 None:intergenic
CTGCTTGCTGCTGCGAGTAG+TGG 0.466733 1_1:+38137538 Msa0021400:CDS
AATGACTTAAAGATCCTCAT+AGG 0.467332 1_1:-38139568 None:intergenic
CTAATGAAGAGGCTAGATCT+TGG 0.468226 1_1:+38137683 Msa0021400:CDS
TTGAAGTTACCGCAAGGATC+CGG 0.468641 1_1:+38139378 Msa0021400:CDS
AACCTCACTCATGAATTGAA+TGG 0.471461 1_1:+38137424 Msa0021400:CDS
GCGAAATCGAGCATTGCAAC+AGG 0.472193 1_1:+38137816 Msa0021400:CDS
CAACACTAAGCATTGGCATT+CGG 0.473530 1_1:-38137594 None:intergenic
TACGAGTGACCGGGCATTCG+AGG 0.475000 1_1:+38138467 Msa0021400:CDS
TCAGATAGGGACGGTGGAGG+TGG 0.475127 1_1:+38138048 Msa0021400:CDS
TTTCAGAAAGTCATGAGTAA+TGG 0.476424 1_1:+38137880 Msa0021400:CDS
GAAAGTCATGAGTAATGGAA+TGG 0.480686 1_1:+38137885 Msa0021400:CDS
TGCAAACATTCCATTCAAAT+GGG 0.481437 1_1:+38136988 Msa0021400:CDS
CAGAAATTTCTCCAGAAACT+AGG 0.482342 1_1:+38139239 Msa0021400:CDS
CTTAGTGTTGGCGATTTCAA+AGG 0.483799 1_1:+38137607 Msa0021400:CDS
TGTAAGAGTCAAGGGAGATA+AGG 0.484906 1_1:+38137489 Msa0021400:CDS
GAGCATTGCAACAGGAGAAA+AGG 0.488985 1_1:+38137824 Msa0021400:CDS
TCAAACTTTCCTCGAATGCC+CGG 0.492186 1_1:-38138476 None:intergenic
ACCTCACTCATGAATTGAAT+GGG 0.492396 1_1:+38137425 Msa0021400:CDS
CAACAGCGATAGGCCAGTTA+CGG 0.493707 1_1:-38139412 None:intergenic
TTAGTGTTGGCGATTTCAAA+GGG 0.496178 1_1:+38137608 Msa0021400:CDS
GCGGTAACCATCCCCGAACC+AGG 0.502417 1_1:+38139125 Msa0021400:CDS
ATTCTAGAATGGCAGAAAGT+TGG 0.502478 1_1:+38136902 Msa0021400:CDS
GTCCAAAAGAATAACTTCAA+AGG 0.504471 1_1:-38139330 None:intergenic
ATAATGAAACAGAATGAAGC+TGG 0.506215 1_1:+38137256 Msa0021400:CDS
ACTTGATAGATGGTAACAAT+GGG 0.506406 1_1:+38138256 Msa0021400:CDS
TAACAGGCCTCCGTTACCTC+AGG 0.507753 1_1:-38137637 None:intergenic
AGTGGAGTTTCTGTTGATGC+AGG 0.512394 1_1:+38137556 Msa0021400:CDS
CAAGTCTATGGCTTTATGCA+AGG 0.514591 1_1:+38138137 Msa0021400:CDS
CCTTTACTTTAAGAAGCATA+GGG 0.517469 1_1:-38137177 None:intergenic
TACTACCTTGGTTAAACTGT+CGG 0.524792 1_1:+38137342 Msa0021400:CDS
GGAGAAAAGGAACGCTATGA+TGG 0.526316 1_1:+38137837 Msa0021400:CDS
ACCTTTACTTTAAGAAGCAT+AGG 0.527347 1_1:-38137178 None:intergenic
AACTTGATAGATGGTAACAA+TGG 0.531282 1_1:+38138255 Msa0021400:CDS
AAAGTCATGAGTAATGGAAT+GGG 0.532334 1_1:+38137886 Msa0021400:CDS
CAGCATGATTTGAAACGTGT+GGG 0.533793 1_1:-38137083 None:intergenic
AGTTTCTGTTGATGCAGGAC+CGG 0.541642 1_1:+38137561 Msa0021400:CDS
AAGTCTATGGCTTTATGCAA+GGG 0.542582 1_1:+38138138 Msa0021400:CDS
GATGCCTAATGTTGATAAAA+CGG 0.545342 1_1:+38137396 Msa0021400:CDS
ACTCTCCCCTGGTTCGGGGA+TGG 0.547088 1_1:-38139132 None:intergenic
TTGAACATGGATATGCAACT+TGG 0.548877 1_1:+38138331 Msa0021400:CDS
GAAACTTATTGTGGATTCGA+TGG 0.549832 1_1:+38137975 Msa0021400:CDS
GATCAAAATTCCTTGTTCAG+AGG 0.550379 1_1:+38139167 Msa0021400:CDS
GATGACTCTGAACTCTCCCC+TGG 0.550748 1_1:-38139143 None:intergenic
TCGTCACCGATAATATAGTT+AGG 0.551741 1_1:-38138195 None:intergenic
TGTTGCTGATCAGGTAGCCG+TGG 0.554230 1_1:+38137735 Msa0021400:CDS
AAATCGCCAACACTAAGCAT+TGG 0.554872 1_1:-38137601 None:intergenic
GAACTTGATGAATGATGCTA+TGG 0.555490 1_1:+38138020 Msa0021400:CDS
CGAAAGCCAATTCTGTTGCA+AGG 0.555618 1_1:+38139503 Msa0021400:CDS
TCCCATTCAATTCATGAGTG+AGG 0.557270 1_1:-38137426 None:intergenic
TTGCGATTCTTCTAGAATTG+CGG 0.559822 1_1:-38137770 None:intergenic
CGATTGAGAAGATTCTAGAA+TGG 0.560839 1_1:+38136891 Msa0021400:CDS
AGAGTTCTTGCTGAAGCGAA+AGG 0.561096 1_1:+38137204 Msa0021400:CDS
CCGGATGTTGTAAGAGTCAA+GGG 0.561701 1_1:+38137481 Msa0021400:CDS
TGCTATGGACAATTCAGATA+GGG 0.564858 1_1:+38138035 Msa0021400:CDS
TTATTGTGGATTCGATGGTA+AGG 0.567940 1_1:+38137980 Msa0021400:CDS
TCTATTAACATTGTCGCTGT+CGG 0.568134 1_1:-38139207 None:intergenic
ATTCTGTTGCAAGGATTCGC+CGG 0.568420 1_1:+38139512 Msa0021400:CDS
GCCGTTAAAGCAACAGCGAT+AGG 0.568669 1_1:-38139422 None:intergenic
CCAAAACATTTCATCTCCAA+AGG 0.569295 1_1:-38138078 None:intergenic
GAATGAACAGAAACTTATTG+TGG 0.569510 1_1:+38137966 Msa0021400:CDS
CAGATACACCCAATAAGAGC+AGG 0.570029 1_1:-38136814 None:intergenic
ATATTATCGGTGACGAGAAG+AGG 0.570583 1_1:+38138202 Msa0021400:CDS
ATGGTTAGGAACTTGATAGA+TGG 0.571670 1_1:+38138246 Msa0021400:CDS
CGAATGCCAATGCTTAGTGT+TGG 0.574855 1_1:+38137595 Msa0021400:CDS
CATATGCAAGAAGATAATCC+AGG 0.578098 1_1:+38138506 Msa0021400:CDS
CTTGCATAAAGCCATAGACT+TGG 0.578350 1_1:-38138136 None:intergenic
TCCGGATGTTGTAAGAGTCA+AGG 0.578653 1_1:+38137480 Msa0021400:CDS
TTTGGTACTTCCTAATGAAG+AGG 0.580067 1_1:+38137672 Msa0021400:CDS
GAACGCTATGATGGCGAGTG+AGG 0.581349 1_1:+38137846 Msa0021400:CDS
TGTTATTGGCAGTCAATGAA+AGG 0.581485 1_1:+38139020 Msa0021400:intron
CTTGCTGAAGCGAAAGGCGA+GGG 0.583282 1_1:+38137210 Msa0021400:CDS
CTTCAGAGAGGCTTGCAGGA+AGG 0.584384 1_1:+38138439 Msa0021400:CDS
ACATCACCGTTAGACGAGCT+TGG 0.587602 1_1:-38138357 None:intergenic
CGGAATCTGGAAGTCGAGGA+AGG 0.587888 1_1:+38138307 Msa0021400:CDS
AATTCAGATAGGGACGGTGG+AGG 0.588433 1_1:+38138045 Msa0021400:CDS
CATAGGGATCAAAGTGATGA+GGG 0.588741 1_1:-38137161 None:intergenic
TCAGCATGATTTGAAACGTG+TGG 0.593806 1_1:-38137084 None:intergenic
AATCCCATAACTGAATGCAT+TGG 0.595120 1_1:-38137913 None:intergenic
AAGGGAAATTAGGTCCTATG+AGG 0.595137 1_1:+38139554 Msa0021400:exon
AAGGATGTGTACGAGTGACC+GGG 0.595446 1_1:+38138458 Msa0021400:CDS
GACTTGCAGACCTCTGAACA+AGG 0.597590 1_1:-38139177 None:intergenic
TATTATCGGTGACGAGAAGA+GGG 0.598459 1_1:+38138203 Msa0021400:CDS
CAAGCTCAGAAGAAGAATTG+CGG 0.599403 1_1:+38139444 Msa0021400:CDS
TTTGAACTTCCGGATCCTTG+CGG 0.601307 1_1:-38139387 None:intergenic
CAAAGGGGCATGCACCAGCA+TGG 0.602581 1_1:-38139313 None:intergenic
CGGTAACCATCCCCGAACCA+GGG 0.604626 1_1:+38139126 Msa0021400:CDS
GTAGTTGAAACCGAAGAGCA+AGG 0.606603 1_1:-38139091 None:intergenic
AGAGCAAGGGTCATGAGTTG+AGG 0.607034 1_1:-38139077 None:intergenic
ACAACATCCGGATCAGTGAT+CGG 0.610257 1_1:-38137469 None:intergenic
AGTGTTGGCGATTTCAAAGG+GGG 0.610884 1_1:+38137610 Msa0021400:CDS
GTTGCTGATCAGGTAGCCGT+GGG 0.610984 1_1:+38137736 Msa0021400:CDS
TTGGCGGAATCTGGAAGTCG+AGG 0.612913 1_1:+38138303 Msa0021400:CDS
CTGAACTCTCCCCTGGTTCG+GGG 0.615088 1_1:-38139136 None:intergenic
GCATAGGGATCAAAGTGATG+AGG 0.615167 1_1:-38137162 None:intergenic
TCTTGCTGAAGCGAAAGGCG+AGG 0.616326 1_1:+38137209 Msa0021400:CDS
TAGTTGAAACCGAAGAGCAA+GGG 0.619553 1_1:-38139090 None:intergenic
GTGCATGTTAGATTTGACAT+AGG 0.621016 1_1:+38138378 Msa0021400:CDS
GGGGACGCCTGAGGTAACGG+AGG 0.625733 1_1:+38137630 Msa0021400:CDS
AGTCGAGGAAGGATTGAACA+TGG 0.630620 1_1:+38138318 Msa0021400:CDS
TGGAGACCAAGCTCGTCTAA+CGG 0.635163 1_1:+38138351 Msa0021400:CDS
TCACTCATGAATTGAATGGG+AGG 0.638853 1_1:+38137428 Msa0021400:CDS
ACTTATGAGAGAGAAATTGG+AGG 0.641195 1_1:+38137792 Msa0021400:CDS
GGTAACCATCCCCGAACCAG+GGG 0.647398 1_1:+38139127 Msa0021400:CDS
GATTCGATGGTAAGGACAAG+CGG 0.650665 1_1:+38137988 Msa0021400:CDS
GACAATTCAGATAGGGACGG+TGG 0.651579 1_1:+38138042 Msa0021400:CDS
GTGACGATGACACGAGCTGG+TGG 0.655983 1_1:+38136867 Msa0021400:CDS
ATGGATTTGAAGTTACCGCA+AGG 0.658657 1_1:+38139372 Msa0021400:CDS
TCATGAGTAATGGAATGGGA+AGG 0.660080 1_1:+38137890 Msa0021400:CDS
GATGGCGAGTGAGGCTAGAG+CGG 0.664178 1_1:+38137855 Msa0021400:CDS
AGACCTCAGTTACTTCAGAG+AGG 0.666164 1_1:+38138427 Msa0021400:CDS
TGTTCAGTACCAAATGCTAG+AGG 0.667794 1_1:+38139050 Msa0021400:CDS
GGTTGCAGAACTGTGCTGTG+TGG 0.669623 1_1:+38137374 Msa0021400:CDS
AGTTTCCGACAGTTTAACCA+AGG 0.671343 1_1:-38137347 None:intergenic
TTGATAGATGGTAACAATGG+GGG 0.671786 1_1:+38138258 Msa0021400:CDS
ATGGACAATTCAGATAGGGA+CGG 0.674602 1_1:+38138039 Msa0021400:CDS
ACTGTGACGATGACACGAGC+TGG 0.677647 1_1:+38136864 Msa0021400:CDS
TCAACTACGCTGTTCTACCG+CGG 0.678877 1_1:+38139106 Msa0021400:CDS
GTGTTGGCGATTTCAAAGGG+GGG 0.681741 1_1:+38137611 Msa0021400:CDS
AAGCCTCTCTGAAGTAACTG+AGG 0.686516 1_1:-38138430 None:intergenic
TAGTGTTGGCGATTTCAAAG+GGG 0.690768 1_1:+38137609 Msa0021400:CDS
TGCGGCATGAGAAAGACCCA+CGG 0.697860 1_1:-38137752 None:intergenic
AGCATGATTTGAAACGTGTG+GGG 0.698751 1_1:-38137082 None:intergenic
TGGTTCGGGGATGGTTACCG+CGG 0.700590 1_1:-38139123 None:intergenic
CTTGATAGATGGTAACAATG+GGG 0.715045 1_1:+38138257 Msa0021400:CDS
CCAAAAGAATAACTTCAAAG+GGG 0.718508 1_1:-38139328 None:intergenic
CACATGAAACCAATGCAGTG+AGG 0.730416 1_1:-38137126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGACATTATTCATTAA+AGG + chr1_1:38138590-38138609 Msa0021400:intron 15.0%
!! TTGAACAAATTTGAAAAATA+TGG - chr1_1:38138892-38138911 None:intergenic 15.0%
!! GTAATTAGAACTATTAAATT+AGG + chr1_1:38138952-38138971 Msa0021400:intron 15.0%
!! ATGTCAATAAAGATGAAAAT+CGG - chr1_1:38138580-38138599 None:intergenic 20.0%
!!! AAAATTGTGATAGAACATTT+TGG + chr1_1:38138638-38138657 Msa0021400:intron 20.0%
!! AATTATTCATTGGAATTTCA+TGG - chr1_1:38138918-38138937 None:intergenic 20.0%
!! ATGAAATTCCAATGAATAAT+TGG + chr1_1:38138917-38138936 Msa0021400:intron 20.0%
!! TTAATTTTCCTGCTCTTATT+GGG + chr1_1:38136806-38136825 Msa0021400:CDS 25.0%
! TGAAATAAAGAAGCTCAATA+GGG - chr1_1:38136961-38136980 None:intergenic 25.0%
! ATGAAATAAAGAAGCTCAAT+AGG - chr1_1:38136962-38136981 None:intergenic 25.0%
! TCTTTGCCTAACTATATTAT+CGG + chr1_1:38138189-38138208 Msa0021400:CDS 25.0%
!! AGAACTTGAAAATTTTGAAC+TGG - chr1_1:38138667-38138686 None:intergenic 25.0%
! ATTCAATTCATAATGTCTCT+AGG + chr1_1:38138856-38138875 Msa0021400:intron 25.0%
! TTCAATTCATAATGTCTCTA+GGG + chr1_1:38138857-38138876 Msa0021400:intron 25.0%
! CCAATAACATACAAAATCAA+TGG - chr1_1:38139009-38139028 None:intergenic 25.0%
!!! CCATTGATTTTGTATGTTAT+TGG + chr1_1:38139006-38139025 Msa0021400:intron 25.0%
! TCCAAAAGAATAACTTCAAA+GGG - chr1_1:38139332-38139351 None:intergenic 25.0%
! CTTAATTTTCCTGCTCTTAT+TGG + chr1_1:38136805-38136824 Msa0021400:CDS 30.0%
TGCAAACATTCCATTCAAAT+GGG + chr1_1:38136988-38137007 Msa0021400:CDS 30.0%
!! TGAAAAAGTACCCATTTGAA+TGG - chr1_1:38137001-38137020 None:intergenic 30.0%
ATTGCTTTCATTGTACTTTG+TGG + chr1_1:38137025-38137044 Msa0021400:CDS 30.0%
TGACACATTTGTTTAATAGC+TGG + chr1_1:38137050-38137069 Msa0021400:CDS 30.0%
TTGTTTAATAGCTGGACTTA+TGG + chr1_1:38137058-38137077 Msa0021400:CDS 30.0%
! CCTTTACTTTAAGAAGCATA+GGG - chr1_1:38137180-38137199 None:intergenic 30.0%
! ACCTTTACTTTAAGAAGCAT+AGG - chr1_1:38137181-38137200 None:intergenic 30.0%
ATAATGAAACAGAATGAAGC+TGG + chr1_1:38137256-38137275 Msa0021400:CDS 30.0%
! TGAGATTTTGTATACTACCT+TGG + chr1_1:38137330-38137349 Msa0021400:CDS 30.0%
TTAAACTGTCGGAAACTTTA+GGG + chr1_1:38137353-38137372 Msa0021400:CDS 30.0%
! GATGCCTAATGTTGATAAAA+CGG + chr1_1:38137396-38137415 Msa0021400:CDS 30.0%
TATTAAAGTTGTTGCTGATC+AGG + chr1_1:38137726-38137745 Msa0021400:CDS 30.0%
TTTCAGAAAGTCATGAGTAA+TGG + chr1_1:38137880-38137899 Msa0021400:CDS 30.0%
! AAAGTCATGAGTAATGGAAT+GGG + chr1_1:38137886-38137905 Msa0021400:CDS 30.0%
GAATGAACAGAAACTTATTG+TGG + chr1_1:38137966-38137985 Msa0021400:CDS 30.0%
AACTTGATAGATGGTAACAA+TGG + chr1_1:38138255-38138274 Msa0021400:CDS 30.0%
ACTTGATAGATGGTAACAAT+GGG + chr1_1:38138256-38138275 Msa0021400:CDS 30.0%
!!! GATTCTTGTGTTTCAAGTTT+TGG + chr1_1:38138284-38138303 Msa0021400:CDS 30.0%
CAAATGTTATATAGCTTACC+TGG - chr1_1:38138527-38138546 None:intergenic 30.0%
ACACGTATTGAATCATGTAT+CGG - chr1_1:38138775-38138794 None:intergenic 30.0%
GCTTTCATTCATAGATTTGT+TGG + chr1_1:38138822-38138841 Msa0021400:intron 30.0%
TCAATTCATAATGTCTCTAG+GGG + chr1_1:38138858-38138877 Msa0021400:intron 30.0%
ATAGCACACCAATTATTCAT+TGG - chr1_1:38138928-38138947 None:intergenic 30.0%
TAACAATACATCCTAGTTTC+TGG - chr1_1:38139253-38139272 None:intergenic 30.0%
! ATTGTTACATCTGTTTCTTC+CGG + chr1_1:38139266-38139285 Msa0021400:CDS 30.0%
CCAAAAGAATAACTTCAAAG+GGG - chr1_1:38139331-38139350 None:intergenic 30.0%
GTCCAAAAGAATAACTTCAA+AGG - chr1_1:38139333-38139352 None:intergenic 30.0%
ACTTCAAATCCATCTAAATC+AGG - chr1_1:38139365-38139384 None:intergenic 30.0%
GGGAAAAATGTATGCATATT+GGG + chr1_1:38139465-38139484 Msa0021400:CDS 30.0%
TGTATGCATATTGGGTTTAA+TGG + chr1_1:38139473-38139492 Msa0021400:CDS 30.0%
!!! AATTTCCCTTCAGGATTTTT+TGG - chr1_1:38139544-38139563 None:intergenic 30.0%
AAAAATCCTGAAGGGAAATT+AGG + chr1_1:38139544-38139563 Msa0021400:CDS 30.0%
AATGACTTAAAGATCCTCAT+AGG - chr1_1:38139571-38139590 None:intergenic 30.0%
ATGTATAAAGCAACAGCATC+TGG + chr1_1:38136779-38136798 Msa0021400:CDS 35.0%
! CGATTGAGAAGATTCTAGAA+TGG + chr1_1:38136891-38136910 Msa0021400:CDS 35.0%
!! ATTCTAGAATGGCAGAAAGT+TGG + chr1_1:38136902-38136921 Msa0021400:CDS 35.0%
GTGCAAACATTCCATTCAAA+TGG + chr1_1:38136987-38137006 Msa0021400:CDS 35.0%
CCCTATGCTTCTTAAAGTAA+AGG + chr1_1:38137177-38137196 Msa0021400:CDS 35.0%
TACTACCTTGGTTAAACTGT+CGG + chr1_1:38137342-38137361 Msa0021400:CDS 35.0%
GTTAAACTGTCGGAAACTTT+AGG + chr1_1:38137352-38137371 Msa0021400:CDS 35.0%
!! ATCGCCGTTTTATCAACATT+AGG - chr1_1:38137403-38137422 None:intergenic 35.0%
AACCTCACTCATGAATTGAA+TGG + chr1_1:38137424-38137443 Msa0021400:CDS 35.0%
ACCTCACTCATGAATTGAAT+GGG + chr1_1:38137425-38137444 Msa0021400:CDS 35.0%
!! TTAGTGTTGGCGATTTCAAA+GGG + chr1_1:38137608-38137627 Msa0021400:CDS 35.0%
TTTGGTACTTCCTAATGAAG+AGG + chr1_1:38137672-38137691 Msa0021400:CDS 35.0%
!! TTGCGATTCTTCTAGAATTG+CGG - chr1_1:38137773-38137792 None:intergenic 35.0%
GCAACTTATGAGAGAGAAAT+TGG + chr1_1:38137789-38137808 Msa0021400:CDS 35.0%
ACTTATGAGAGAGAAATTGG+AGG + chr1_1:38137792-38137811 Msa0021400:CDS 35.0%
! GAAAGTCATGAGTAATGGAA+TGG + chr1_1:38137885-38137904 Msa0021400:CDS 35.0%
AATCCCATAACTGAATGCAT+TGG - chr1_1:38137916-38137935 None:intergenic 35.0%
GAAACTTATTGTGGATTCGA+TGG + chr1_1:38137975-38137994 Msa0021400:CDS 35.0%
TTATTGTGGATTCGATGGTA+AGG + chr1_1:38137980-38137999 Msa0021400:CDS 35.0%
GAACTTGATGAATGATGCTA+TGG + chr1_1:38138020-38138039 Msa0021400:CDS 35.0%
ATGCTATGGACAATTCAGAT+AGG + chr1_1:38138034-38138053 Msa0021400:CDS 35.0%
TGCTATGGACAATTCAGATA+GGG + chr1_1:38138035-38138054 Msa0021400:CDS 35.0%
CCAAAACATTTCATCTCCAA+AGG - chr1_1:38138081-38138100 None:intergenic 35.0%
!! CCTTTGGAGATGAAATGTTT+TGG + chr1_1:38138078-38138097 Msa0021400:CDS 35.0%
!! AAGTCTATGGCTTTATGCAA+GGG + chr1_1:38138138-38138157 Msa0021400:CDS 35.0%
!!! ATGCAAGGGTTTTGGATTTA+AGG + chr1_1:38138152-38138171 Msa0021400:CDS 35.0%
! GATTTAAGGTTGAGGTTGAT+AGG + chr1_1:38138166-38138185 Msa0021400:CDS 35.0%
TCGTCACCGATAATATAGTT+AGG - chr1_1:38138198-38138217 None:intergenic 35.0%
!!! TTTTCAGGTGATTTTGCACA+TGG + chr1_1:38138227-38138246 Msa0021400:CDS 35.0%
ATGGTTAGGAACTTGATAGA+TGG + chr1_1:38138246-38138265 Msa0021400:CDS 35.0%
CTTGATAGATGGTAACAATG+GGG + chr1_1:38138257-38138276 Msa0021400:CDS 35.0%
TTGATAGATGGTAACAATGG+GGG + chr1_1:38138258-38138277 Msa0021400:CDS 35.0%
!!! TCTTGTGTTTCAAGTTTTGG+CGG + chr1_1:38138287-38138306 Msa0021400:CDS 35.0%
TTGAACATGGATATGCAACT+TGG + chr1_1:38138331-38138350 Msa0021400:CDS 35.0%
GTGCATGTTAGATTTGACAT+AGG + chr1_1:38138378-38138397 Msa0021400:CDS 35.0%
CATATGCAAGAAGATAATCC+AGG + chr1_1:38138506-38138525 Msa0021400:CDS 35.0%
CAATTCATAATGTCTCTAGG+GGG + chr1_1:38138859-38138878 Msa0021400:intron 35.0%
TGTTATTGGCAGTCAATGAA+AGG + chr1_1:38139020-38139039 Msa0021400:intron 35.0%
GATCAAAATTCCTTGTTCAG+AGG + chr1_1:38139167-38139186 Msa0021400:CDS 35.0%
TCTATTAACATTGTCGCTGT+CGG - chr1_1:38139210-38139229 None:intergenic 35.0%
CAGAAATTTCTCCAGAAACT+AGG + chr1_1:38139239-38139258 Msa0021400:CDS 35.0%
! AAGATTAAGGCATTCGAATC+CGG - chr1_1:38139288-38139307 None:intergenic 35.0%
TTCGAATGCCTTAATCTTGT+TGG + chr1_1:38139290-38139309 Msa0021400:CDS 35.0%
!!! CCCCTTTGAAGTTATTCTTT+TGG + chr1_1:38139328-38139347 Msa0021400:CDS 35.0%
CATCTAAATCAGGCAAGTTA+AGG - chr1_1:38139355-38139374 None:intergenic 35.0%
!! CTTAACTTGCCTGATTTAGA+TGG + chr1_1:38139353-38139372 Msa0021400:CDS 35.0%
CGGGAAAAATGTATGCATAT+TGG + chr1_1:38139464-38139483 Msa0021400:CDS 35.0%
AGAACTCCAAAAAATCCTGA+AGG + chr1_1:38139535-38139554 Msa0021400:CDS 35.0%
GAACTCCAAAAAATCCTGAA+GGG + chr1_1:38139536-38139555 Msa0021400:CDS 35.0%
! AGTTGGCGATTTTCTGATTG+CGG + chr1_1:38136919-38136938 Msa0021400:CDS 40.0%
! AGCATGATTTGAAACGTGTG+GGG - chr1_1:38137085-38137104 None:intergenic 40.0%
! CAGCATGATTTGAAACGTGT+GGG - chr1_1:38137086-38137105 None:intergenic 40.0%
! TCAGCATGATTTGAAACGTG+TGG - chr1_1:38137087-38137106 None:intergenic 40.0%
GATCAAAGTGATGAGGGTTA+TGG - chr1_1:38137158-38137177 None:intergenic 40.0%
CATAGGGATCAAAGTGATGA+GGG - chr1_1:38137164-38137183 None:intergenic 40.0%
AGTTTCCGACAGTTTAACCA+AGG - chr1_1:38137350-38137369 None:intergenic 40.0%
TCCCATTCAATTCATGAGTG+AGG - chr1_1:38137429-38137448 None:intergenic 40.0%
TCACTCATGAATTGAATGGG+AGG + chr1_1:38137428-38137447 Msa0021400:CDS 40.0%
TTCTATACCGATCACTGATC+CGG + chr1_1:38137462-38137481 Msa0021400:CDS 40.0%
TGTAAGAGTCAAGGGAGATA+AGG + chr1_1:38137489-38137508 Msa0021400:CDS 40.0%
!! CAACACTAAGCATTGGCATT+CGG - chr1_1:38137597-38137616 None:intergenic 40.0%
AAATCGCCAACACTAAGCAT+TGG - chr1_1:38137604-38137623 None:intergenic 40.0%
!! CTTAGTGTTGGCGATTTCAA+AGG + chr1_1:38137607-38137626 Msa0021400:CDS 40.0%
!! TAGTGTTGGCGATTTCAAAG+GGG + chr1_1:38137609-38137628 Msa0021400:CDS 40.0%
! CAAAACAAGTATCGCGTAAC+AGG - chr1_1:38137656-38137675 None:intergenic 40.0%
! CTGTTACGCGATACTTGTTT+TGG + chr1_1:38137654-38137673 Msa0021400:CDS 40.0%
CAAGATCTAGCCTCTTCATT+AGG - chr1_1:38137685-38137704 None:intergenic 40.0%
CTAATGAAGAGGCTAGATCT+TGG + chr1_1:38137683-38137702 Msa0021400:CDS 40.0%
! TCATGAGTAATGGAATGGGA+AGG + chr1_1:38137890-38137909 Msa0021400:CDS 40.0%
AAGGCCAATGCATTCAGTTA+TGG + chr1_1:38137909-38137928 Msa0021400:CDS 40.0%
AGGCCAATGCATTCAGTTAT+GGG + chr1_1:38137910-38137929 Msa0021400:CDS 40.0%
ATGGACAATTCAGATAGGGA+CGG + chr1_1:38138039-38138058 Msa0021400:CDS 40.0%
CTTGCATAAAGCCATAGACT+TGG - chr1_1:38138139-38138158 None:intergenic 40.0%
!! CAAGTCTATGGCTTTATGCA+AGG + chr1_1:38138137-38138156 Msa0021400:CDS 40.0%
!!! ATGGCTTTATGCAAGGGTTT+TGG + chr1_1:38138144-38138163 Msa0021400:CDS 40.0%
!!! GGGTTTTGGATTTAAGGTTG+AGG + chr1_1:38138158-38138177 Msa0021400:CDS 40.0%
ATATTATCGGTGACGAGAAG+AGG + chr1_1:38138202-38138221 Msa0021400:CDS 40.0%
TATTATCGGTGACGAGAAGA+GGG + chr1_1:38138203-38138222 Msa0021400:CDS 40.0%
! AGGTGATTTTGCACATGGTT+AGG + chr1_1:38138232-38138251 Msa0021400:CDS 40.0%
!!! TTTCAAGTTTTGGCGGAATC+TGG + chr1_1:38138294-38138313 Msa0021400:CDS 40.0%
CGTATTGAATCATGTATCGG+CGG - chr1_1:38138772-38138791 None:intergenic 40.0%
TGTTCAGTACCAAATGCTAG+AGG + chr1_1:38139050-38139069 Msa0021400:CDS 40.0%
TAGTTGAAACCGAAGAGCAA+GGG - chr1_1:38139093-38139112 None:intergenic 40.0%
! ATGGATTTGAAGTTACCGCA+AGG + chr1_1:38139372-38139391 Msa0021400:CDS 40.0%
! AGTTACGGCTTTTGAACTTC+CGG - chr1_1:38139400-38139419 None:intergenic 40.0%
CAAGCTCAGAAGAAGAATTG+CGG + chr1_1:38139444-38139463 Msa0021400:CDS 40.0%
AAGCTCAGAAGAAGAATTGC+GGG + chr1_1:38139445-38139464 Msa0021400:CDS 40.0%
!! CTTGCAACAGAATTGGCTTT+CGG - chr1_1:38139505-38139524 None:intergenic 40.0%
!!! CAGGATTTTTTGGAGTTCTC+CGG - chr1_1:38139534-38139553 None:intergenic 40.0%
ATAGGACCTAATTTCCCTTC+AGG - chr1_1:38139553-38139572 None:intergenic 40.0%
AAGGGAAATTAGGTCCTATG+AGG + chr1_1:38139554-38139573 Msa0021400:exon 40.0%
CAGATACACCCAATAAGAGC+AGG - chr1_1:38136817-38136836 None:intergenic 45.0%
GGTGTATCTGCAACTGCTAA+TGG + chr1_1:38136827-38136846 Msa0021400:CDS 45.0%
GTCATCGTCACAGTTGCATT+TGG - chr1_1:38136858-38136877 None:intergenic 45.0%
CTTGAAAGTCCTCACTGCAT+TGG + chr1_1:38137117-38137136 Msa0021400:CDS 45.0%
CACATGAAACCAATGCAGTG+AGG - chr1_1:38137129-38137148 None:intergenic 45.0%
GCATAGGGATCAAAGTGATG+AGG - chr1_1:38137165-38137184 None:intergenic 45.0%
AGAGTTCTTGCTGAAGCGAA+AGG + chr1_1:38137204-38137223 Msa0021400:CDS 45.0%
AGGGAGCTTGGAATTGAGTA+TGG + chr1_1:38137229-38137248 Msa0021400:CDS 45.0%
ACAACATCCGGATCAGTGAT+CGG - chr1_1:38137472-38137491 None:intergenic 45.0%
TCCGGATGTTGTAAGAGTCA+AGG + chr1_1:38137480-38137499 Msa0021400:CDS 45.0%
CCCTTGACTCTTACAACATC+CGG - chr1_1:38137484-38137503 None:intergenic 45.0%
CCGGATGTTGTAAGAGTCAA+GGG + chr1_1:38137481-38137500 Msa0021400:CDS 45.0%
AGTGGAGTTTCTGTTGATGC+AGG + chr1_1:38137556-38137575 Msa0021400:CDS 45.0%
AGTTTCTGTTGATGCAGGAC+CGG + chr1_1:38137561-38137580 Msa0021400:CDS 45.0%
CGAATGCCAATGCTTAGTGT+TGG + chr1_1:38137595-38137614 Msa0021400:CDS 45.0%
!! AGTGTTGGCGATTTCAAAGG+GGG + chr1_1:38137610-38137629 Msa0021400:CDS 45.0%
! GAGCATTGCAACAGGAGAAA+AGG + chr1_1:38137824-38137843 Msa0021400:CDS 45.0%
GGAGAAAAGGAACGCTATGA+TGG + chr1_1:38137837-38137856 Msa0021400:CDS 45.0%
GATTCGATGGTAAGGACAAG+CGG + chr1_1:38137988-38138007 Msa0021400:CDS 45.0%
TGGAGGTGGAAGATTTCCTT+TGG + chr1_1:38138062-38138081 Msa0021400:CDS 45.0%
! TGACGAGAAGAGGGTTTTTC+AGG + chr1_1:38138212-38138231 Msa0021400:CDS 45.0%
ATAGATGGTAACAATGGGGG+AGG + chr1_1:38138261-38138280 Msa0021400:CDS 45.0%
TAGATGGTAACAATGGGGGA+GGG + chr1_1:38138262-38138281 Msa0021400:CDS 45.0%
AGTCGAGGAAGGATTGAACA+TGG + chr1_1:38138318-38138337 Msa0021400:CDS 45.0%
AGACCTCAGTTACTTCAGAG+AGG + chr1_1:38138427-38138446 Msa0021400:CDS 45.0%
!! AAGCCTCTCTGAAGTAACTG+AGG - chr1_1:38138433-38138452 None:intergenic 45.0%
TCAAACTTTCCTCGAATGCC+CGG - chr1_1:38138479-38138498 None:intergenic 45.0%
TGAGGAAAGCCTCTAGCATT+TGG - chr1_1:38139062-38139081 None:intergenic 45.0%
AACTCATGACCCTTGCTCTT+CGG + chr1_1:38139081-38139100 Msa0021400:CDS 45.0%
GTAGTTGAAACCGAAGAGCA+AGG - chr1_1:38139094-38139113 None:intergenic 45.0%
CAGCATGGCCAACAAGATTA+AGG - chr1_1:38139301-38139320 None:intergenic 45.0%
CTTAATCTTGTTGGCCATGC+TGG + chr1_1:38139299-38139318 Msa0021400:CDS 45.0%
TTGAAGTTACCGCAAGGATC+CGG + chr1_1:38139378-38139397 Msa0021400:CDS 45.0%
TTTGAACTTCCGGATCCTTG+CGG - chr1_1:38139390-38139409 None:intergenic 45.0%
GGAAGTTCAAAAGCCGTAAC+TGG + chr1_1:38139399-38139418 Msa0021400:CDS 45.0%
!! GCCTATCGCTGTTGCTTTAA+CGG + chr1_1:38139421-38139440 Msa0021400:CDS 45.0%
CGAAAGCCAATTCTGTTGCA+AGG + chr1_1:38139503-38139522 Msa0021400:CDS 45.0%
GCGAATCCTTGCAACAGAAT+TGG - chr1_1:38139512-38139531 None:intergenic 45.0%
ATTCTGTTGCAAGGATTCGC+CGG + chr1_1:38139512-38139531 Msa0021400:CDS 45.0%
! TGGCGATTTTCTGATTGCGG+TGG + chr1_1:38136922-38136941 Msa0021400:CDS 50.0%
! GTGTTGGCGATTTCAAAGGG+GGG + chr1_1:38137611-38137630 Msa0021400:CDS 50.0%
! GCGAAATCGAGCATTGCAAC+AGG + chr1_1:38137816-38137835 Msa0021400:CDS 50.0%
GACAATTCAGATAGGGACGG+TGG + chr1_1:38138042-38138061 Msa0021400:CDS 50.0%
AATTCAGATAGGGACGGTGG+AGG + chr1_1:38138045-38138064 Msa0021400:CDS 50.0%
AGCTTGCATCGCCAAGTCTA+TGG + chr1_1:38138125-38138144 Msa0021400:CDS 50.0%
TGGAGACCAAGCTCGTCTAA+CGG + chr1_1:38138351-38138370 Msa0021400:CDS 50.0%
ACATCACCGTTAGACGAGCT+TGG - chr1_1:38138360-38138379 None:intergenic 50.0%
GTTACTTCAGAGAGGCTTGC+AGG + chr1_1:38138435-38138454 Msa0021400:CDS 50.0%
GAAGGATGTGTACGAGTGAC+CGG + chr1_1:38138457-38138476 Msa0021400:CDS 50.0%
AAGGATGTGTACGAGTGACC+GGG + chr1_1:38138458-38138477 Msa0021400:CDS 50.0%
! CATGTATCGGCGGCTAATGA+AGG - chr1_1:38138762-38138781 None:intergenic 50.0%
AGAGCAAGGGTCATGAGTTG+AGG - chr1_1:38139080-38139099 None:intergenic 50.0%
TCAACTACGCTGTTCTACCG+CGG + chr1_1:38139106-38139125 Msa0021400:CDS 50.0%
GACTTGCAGACCTCTGAACA+AGG - chr1_1:38139180-38139199 None:intergenic 50.0%
! CAGAGGTCTGCAAGTCTTGT+TGG + chr1_1:38139184-38139203 Msa0021400:CDS 50.0%
CAACAGCGATAGGCCAGTTA+CGG - chr1_1:38139415-38139434 None:intergenic 50.0%
GCCGTTAAAGCAACAGCGAT+AGG - chr1_1:38139425-38139444 None:intergenic 50.0%
ACTGTGACGATGACACGAGC+TGG + chr1_1:38136864-38136883 Msa0021400:CDS 55.0%
TCTTGCTGAAGCGAAAGGCG+AGG + chr1_1:38137209-38137228 Msa0021400:CDS 55.0%
CTTGCTGAAGCGAAAGGCGA+GGG + chr1_1:38137210-38137229 Msa0021400:CDS 55.0%
GGTTGCAGAACTGTGCTGTG+TGG + chr1_1:38137374-38137393 Msa0021400:CDS 55.0%
TAACAGGCCTCCGTTACCTC+AGG - chr1_1:38137640-38137659 None:intergenic 55.0%
TGTTGCTGATCAGGTAGCCG+TGG + chr1_1:38137735-38137754 Msa0021400:CDS 55.0%
GTTGCTGATCAGGTAGCCGT+GGG + chr1_1:38137736-38137755 Msa0021400:CDS 55.0%
TGCGGCATGAGAAAGACCCA+CGG - chr1_1:38137755-38137774 None:intergenic 55.0%
! GAACGCTATGATGGCGAGTG+AGG + chr1_1:38137846-38137865 Msa0021400:CDS 55.0%
TTGGCGGAATCTGGAAGTCG+AGG + chr1_1:38138303-38138322 Msa0021400:CDS 55.0%
CGGAATCTGGAAGTCGAGGA+AGG + chr1_1:38138307-38138326 Msa0021400:CDS 55.0%
CTTCAGAGAGGCTTGCAGGA+AGG + chr1_1:38138439-38138458 Msa0021400:CDS 55.0%
TCTGAACTCTCCCCTGGTTC+GGG - chr1_1:38139140-38139159 None:intergenic 55.0%
CTCTGAACTCTCCCCTGGTT+CGG - chr1_1:38139141-38139160 None:intergenic 55.0%
GATGACTCTGAACTCTCCCC+TGG - chr1_1:38139146-38139165 None:intergenic 55.0%
GTGACGATGACACGAGCTGG+TGG + chr1_1:38136867-38136886 Msa0021400:CDS 60.0%
AAGCGAAAGGCGAGGGAGCT+TGG + chr1_1:38137217-38137236 Msa0021400:CDS 60.0%
! CTGCTTGCTGCTGCGAGTAG+TGG + chr1_1:38137538-38137557 Msa0021400:CDS 60.0%
GGCATTCGGATCGCAGCAAC+CGG - chr1_1:38137583-38137602 None:intergenic 60.0%
TTTCAAAGGGGGGACGCCTG+AGG + chr1_1:38137621-38137640 Msa0021400:CDS 60.0%
GATGGCGAGTGAGGCTAGAG+CGG + chr1_1:38137855-38137874 Msa0021400:CDS 60.0%
TCAGATAGGGACGGTGGAGG+TGG + chr1_1:38138048-38138067 Msa0021400:CDS 60.0%
TACGAGTGACCGGGCATTCG+AGG + chr1_1:38138467-38138486 Msa0021400:CDS 60.0%
! TGGTTCGGGGATGGTTACCG+CGG - chr1_1:38139126-38139145 None:intergenic 60.0%
CGGTAACCATCCCCGAACCA+GGG + chr1_1:38139126-38139145 Msa0021400:CDS 60.0%
GGTAACCATCCCCGAACCAG+GGG + chr1_1:38139127-38139146 Msa0021400:CDS 60.0%
! CTGAACTCTCCCCTGGTTCG+GGG - chr1_1:38139139-38139158 None:intergenic 60.0%
! CAAAGGGGCATGCACCAGCA+TGG - chr1_1:38139316-38139335 None:intergenic 60.0%
AGGGGGGACGCCTGAGGTAA+CGG + chr1_1:38137627-38137646 Msa0021400:CDS 65.0%
GCGGTAACCATCCCCGAACC+AGG + chr1_1:38139125-38139144 Msa0021400:CDS 65.0%
!! ACTCTCCCCTGGTTCGGGGA+TGG - chr1_1:38139135-38139154 None:intergenic 65.0%
! GGGGACGCCTGAGGTAACGG+AGG + chr1_1:38137630-38137649 Msa0021400:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 38136779 38139680 38136779 ID=Msa0021400;Name=Msa0021400
chr1_1 mRNA 38136779 38139680 38136779 ID=Msa0021400-mRNA-1;Parent=Msa0021400;Name=Msa0021400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.5|1|1|1|2|115|760
chr1_1 exon 38136779 38138527 38136779 ID=Msa0021400-mRNA-1:exon:11836;Parent=Msa0021400-mRNA-1
chr1_1 exon 38139032 38139680 38139032 ID=Msa0021400-mRNA-1:exon:11837;Parent=Msa0021400-mRNA-1
chr1_1 CDS 38136779 38138527 38136779 ID=Msa0021400-mRNA-1:cds;Parent=Msa0021400-mRNA-1
chr1_1 CDS 38139032 38139565 38139032 ID=Msa0021400-mRNA-1:cds;Parent=Msa0021400-mRNA-1
chr1_1 three_prime_UTR 38139566 38139680 38139566 ID=Msa0021400-mRNA-1:three_prime_utr;Parent=Msa0021400-mRNA-1
Gene Sequence

>Msa0021400

ATGTATAAAGCAACAGCATCTGGATTCTTAATTTTCCTGCTCTTATTGGGTGTATCTGCAACTGCTAATGGATTTTCCAAATGCAACTGTGACGATGACACGAGCTGGTGGACGATTGAGAAGATTCTAGAATGGCAGAAAGTTGGCGATTTTCTGATTGCGGTGGCGTACTTCTCGATCCCTATTGAGCTTCTTTATTTCATCAGTTGTGCAAACATTCCATTCAAATGGGTACTTTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTTAATAGCTGGACTTATGGACCCCACACGTTTCAAATCATGCTGACTCTGACTGTCTTGAAAGTCCTCACTGCATTGGTTTCATGTGCAACTACCATAACCCTCATCACTTTGATCCCTATGCTTCTTAAAGTAAAGGTTCGAGAGTTCTTGCTGAAGCGAAAGGCGAGGGAGCTTGGAATTGAGTATGGTATGATAATGAAACAGAATGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCGCTCGATAGACATGAGATTTTGTATACTACCTTGGTTAAACTGTCGGAAACTTTAGGGTTGCAGAACTGTGCTGTGTGGATGCCTAATGTTGATAAAACGGCGATGAACCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATACCGATCACTGATCCGGATGTTGTAAGAGTCAAGGGAGATAAGGTAGTGCATATGATTGATTCTGACTCGCTGCTTGCTGCTGCGAGTAGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCGATCCGAATGCCAATGCTTAGTGTTGGCGATTTCAAAGGGGGGACGCCTGAGGTAACGGAGGCCTGTTACGCGATACTTGTTTTGGTACTTCCTAATGAAGAGGCTAGATCTTGGAGCAATCAAGAGCTTGAGATTATTAAAGTTGTTGCTGATCAGGTAGCCGTGGGTCTTTCTCATGCCGCAATTCTAGAAGAATCGCAACTTATGAGAGAGAAATTGGAGGAGCGAAATCGAGCATTGCAACAGGAGAAAAGGAACGCTATGATGGCGAGTGAGGCTAGAGCGGTTTTTCAGAAAGTCATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGATTGCTTTCAATGATGCAAGATGAGAATTTGAAGAATGAACAGAAACTTATTGTGGATTCGATGGTAAGGACAAGCGGTGTCGTATCGAACTTGATGAATGATGCTATGGACAATTCAGATAGGGACGGTGGAGGTGGAAGATTTCCTTTGGAGATGAAATGTTTTGGTTTACATAACATGTTAAAACAAGCAGCTTGCATCGCCAAGTCTATGGCTTTATGCAAGGGTTTTGGATTTAAGGTTGAGGTTGATAGGTCTTTGCCTAACTATATTATCGGTGACGAGAAGAGGGTTTTTCAGGTGATTTTGCACATGGTTAGGAACTTGATAGATGGTAACAATGGGGGAGGGATTCTTGTGTTTCAAGTTTTGGCGGAATCTGGAAGTCGAGGAAGGATTGAACATGGATATGCAACTTGGAGACCAAGCTCGTCTAACGGTGATGTGCATGTTAGATTTGACATAGGTATCAATAGCAGTAACTCTGAATCAGAGACCTCAGTTACTTCAGAGAGGCTTGCAGGAAGGATGTGTACGAGTGACCGGGCATTCGAGGAAAGTTTGAGCTTCAGCATATGCAAGAAGATAATCCAGTCAATGAAAGGTAACATATGTTCAGTACCAAATGCTAGAGGCTTTCCTCAACTCATGACCCTTGCTCTTCGGTTTCAACTACGCTGTTCTACCGCGGTAACCATCCCCGAACCAGGGGAGAGTTCAGAGTCATCTGATCAAAATTCCTTGTTCAGAGGTCTGCAAGTCTTGTTGGCCGACAGCGACAATGTTAATAGAGCAGTAACACAGAAATTTCTCCAGAAACTAGGATGTATTGTTACATCTGTTTCTTCCGGATTCGAATGCCTTAATCTTGTTGGCCATGCTGGTGCATGCCCCTTTGAAGTTATTCTTTTGGACCTTAACTTGCCTGATTTAGATGGATTTGAAGTTACCGCAAGGATCCGGAAGTTCAAAAGCCGTAACTGGCCTATCGCTGTTGCTTTAACGGCAAGCTCAGAAGAAGAATTGCGGGAAAAATGTATGCATATTGGGTTTAATGGAGTTATCCGAAAGCCAATTCTGTTGCAAGGATTCGCCGGAGAACTCCAAAAAATCCTGAAGGGAAATTAG

Protein sequence

>Msa0021400

MYKATASGFLIFLLLLGVSATANGFSKCNCDDDTSWWTIEKILEWQKVGDFLIAVAYFSIPIELLYFISCANIPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMLTLTVLKVLTALVSCATTITLITLIPMLLKVKVREFLLKRKARELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHEILYTTLVKLSETLGLQNCAVWMPNVDKTAMNLTHELNGRNVNSSIPITDPDVVRVKGDKVVHMIDSDSLLAAASSGVSVDAGPVAAIRMPMLSVGDFKGGTPEVTEACYAILVLVLPNEEARSWSNQELEIIKVVADQVAVGLSHAAILEESQLMREKLEERNRALQQEKRNAMMASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDENLKNEQKLIVDSMVRTSGVVSNLMNDAMDNSDRDGGGGRFPLEMKCFGLHNMLKQAACIAKSMALCKGFGFKVEVDRSLPNYIIGDEKRVFQVILHMVRNLIDGNNGGGILVFQVLAESGSRGRIEHGYATWRPSSSNGDVHVRFDIGINSSNSESETSVTSERLAGRMCTSDRAFEESLSFSICKKIIQSMKGNICSVPNARGFPQLMTLALRFQLRCSTAVTIPEPGESSESSDQNSLFRGLQVLLADSDNVNRAVTQKFLQKLGCIVTSVSSGFECLNLVGHAGACPFEVILLDLNLPDLDGFEVTARIRKFKSRNWPIAVALTASSEEELREKCMHIGFNGVIRKPILLQGFAGELQKILKGN*