Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434240 | KEH36081.1 | 96.389 | 360 | 13 | 0 | 1 | 360 | 1 | 360 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434240 | sp|O81862|CHIC_ARATH | 50.696 | 359 | 163 | 6 | 11 | 360 | 9 | 362 | 2.69e-115 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434240 | A0A072V330 | 96.389 | 360 | 13 | 0 | 1 | 360 | 1 | 360 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0434240 | Msa0555950 | 0.806457 | 8.149005e-50 | -8.615850e-47 |
| Msa0434240 | Msa0610370 | 0.805451 | 1.326782e-49 | -8.615850e-47 |
| Msa0434240 | Msa0650900 | 0.802063 | 6.699801e-49 | -8.615850e-47 |
| Msa0434240 | Msa1053260 | 0.807350 | 5.276734e-50 | -8.615850e-47 |
| Msa0434240 | Msa1095480 | 0.833117 | 6.412600e-56 | -8.615850e-47 |
| Msa0434240 | Msa1142500 | 0.815338 | 9.731282e-52 | -8.615850e-47 |
| Msa0434240 | Msa1427830 | 0.813198 | 2.889491e-51 | -8.615850e-47 |
| Msa0434240 | Msa1454110 | 0.806200 | 9.234595e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434240 | MtrunA17_Chr3g0140461 | 96.111 | 360 | 14 | 0 | 1 | 360 | 26 | 385 | 0.0 | 712 |
| Msa0434240 | MtrunA17_Chr3g0140491 | 85.237 | 359 | 52 | 1 | 1 | 359 | 1 | 358 | 0.0 | 634 |
| Msa0434240 | MtrunA17_Chr4g0065451 | 85.135 | 148 | 22 | 0 | 212 | 359 | 1 | 148 | 1.05e-91 | 271 |
| Msa0434240 | MtrunA17_Chr4g0065461 | 81.560 | 141 | 23 | 2 | 1 | 140 | 1 | 139 | 1.56e-68 | 212 |
| Msa0434240 | MtrunA17_Chr4g0065531 | 33.600 | 375 | 224 | 8 | 3 | 363 | 2 | 365 | 1.49e-65 | 212 |
| Msa0434240 | MtrunA17_Chr1g0149821 | 34.857 | 350 | 210 | 5 | 22 | 358 | 32 | 376 | 4.03e-64 | 209 |
| Msa0434240 | MtrunA17_Chr4g0065561 | 36.193 | 373 | 209 | 10 | 9 | 363 | 6 | 367 | 7.19e-64 | 216 |
| Msa0434240 | MtrunA17_Chr4g0065541 | 34.561 | 353 | 208 | 7 | 26 | 364 | 17 | 360 | 5.08e-62 | 211 |
| Msa0434240 | MtrunA17_Chr4g0065511 | 35.366 | 328 | 196 | 6 | 30 | 346 | 35 | 357 | 3.43e-60 | 198 |
| Msa0434240 | MtrunA17_Chr4g0065501 | 36.047 | 344 | 199 | 7 | 30 | 357 | 37 | 375 | 3.23e-56 | 188 |
| Msa0434240 | MtrunA17_Chr4g0066051 | 35.227 | 176 | 111 | 1 | 6 | 181 | 4 | 176 | 1.85e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434240 | AT4G19810.2 | 50.696 | 359 | 163 | 6 | 11 | 360 | 9 | 362 | 2.73e-116 | 343 |
| Msa0434240 | AT4G19810.1 | 50.696 | 359 | 163 | 6 | 11 | 360 | 9 | 362 | 2.73e-116 | 343 |
| Msa0434240 | AT4G19820.1 | 47.500 | 360 | 175 | 6 | 10 | 360 | 6 | 360 | 2.19e-104 | 312 |
| Msa0434240 | AT4G19800.1 | 44.928 | 345 | 175 | 6 | 25 | 360 | 2 | 340 | 1.45e-96 | 293 |
| Msa0434240 | AT4G19750.1 | 44.628 | 363 | 174 | 10 | 17 | 362 | 1 | 353 | 6.84e-94 | 285 |
| Msa0434240 | AT4G19760.1 | 44.293 | 368 | 174 | 10 | 17 | 360 | 1 | 361 | 4.27e-91 | 278 |
| Msa0434240 | AT4G19720.1 | 42.000 | 350 | 177 | 7 | 29 | 360 | 5 | 346 | 4.61e-84 | 259 |
| Msa0434240 | AT4G19730.1 | 42.604 | 338 | 166 | 9 | 17 | 332 | 1 | 332 | 1.95e-74 | 234 |
| Msa0434240 | AT4G19770.1 | 41.379 | 261 | 140 | 5 | 114 | 366 | 1 | 256 | 5.91e-58 | 189 |
| Msa0434240 | AT4G19740.1 | 37.173 | 191 | 106 | 5 | 137 | 317 | 24 | 210 | 9.46e-31 | 116 |
Find 85 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 3_2:+86988002 | None:intergenic |
| TCATGAATTCTATGTTTATT+AGG | 0.202131 | 3_2:+86987577 | None:intergenic |
| TCTACAAATGCTATCATTAA+AGG | 0.237326 | 3_2:-86988324 | Msa0434240:CDS |
| TAGCATTTGTAGAGGAAAAT+TGG | 0.237789 | 3_2:+86988334 | None:intergenic |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 3_2:-86987622 | Msa0434240:CDS |
| GCCAAGCAAAATGGTTTGTT+TGG | 0.270489 | 3_2:-86987394 | Msa0434240:CDS |
| CAACAAAGCAGTGTTTAATT+AGG | 0.279434 | 3_2:+86987301 | None:intergenic |
| CAGATGAAGGTATCACAAAA+TGG | 0.294502 | 3_2:-86987675 | Msa0434240:CDS |
| ATAAAGCTACGCAGGGATTA+GGG | 0.294851 | 3_2:-86987555 | Msa0434240:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 3_2:+86987609 | None:intergenic |
| GATAAAGCTACGCAGGGATT+AGG | 0.321139 | 3_2:-86987556 | Msa0434240:CDS |
| TACCTTCATCTGCACTAAAT+TGG | 0.339776 | 3_2:+86987686 | None:intergenic |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.349055 | 3_2:-86987403 | Msa0434240:CDS |
| CGAATTACTCTTTGACTGAA+TGG | 0.366334 | 3_2:+86988146 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 3_2:-86987895 | Msa0434240:CDS |
| GATAACTATCTGAGATAAAA+AGG | 0.373862 | 3_2:+86987752 | None:intergenic |
| CTGCACTAAATTGGCCGGTT+GGG | 0.383400 | 3_2:+86987695 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 3_2:-86987605 | Msa0434240:CDS |
| TAACAACAGTACGGGCTTGC+CGG | 0.396736 | 3_2:+86987876 | None:intergenic |
| GACGTTGAAAAGACCAACTT+TGG | 0.403887 | 3_2:-86987949 | Msa0434240:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 3_2:-86987903 | Msa0434240:CDS |
| TTATCAATTGGTGGTGGTGG+TGG | 0.419706 | 3_2:-86988111 | Msa0434240:CDS |
| CTATCATTAAAGGTGGCTAT+TGG | 0.423474 | 3_2:-86988314 | Msa0434240:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3_2:-86987794 | Msa0434240:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 3_2:-86987612 | Msa0434240:CDS |
| CATTCAGTCAAAGAGTAATT+CGG | 0.447076 | 3_2:-86988145 | Msa0434240:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 3_2:+86988254 | None:intergenic |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3_2:+86988217 | None:intergenic |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 3_2:-86987462 | Msa0434240:CDS |
| ATATTGAACAAGACAACAAT+TGG | 0.467582 | 3_2:-86987357 | Msa0434240:CDS |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3_2:-86987795 | Msa0434240:CDS |
| CTCAGAATTACTGCTTCAAA+GGG | 0.473408 | 3_2:-86987471 | Msa0434240:CDS |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3_2:-86987800 | Msa0434240:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3_2:+86987730 | None:intergenic |
| ATCACAAAATGGGTAGGGTT+AGG | 0.483616 | 3_2:-86987664 | Msa0434240:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.484655 | 3_2:-86987987 | Msa0434240:CDS |
| TGTAATGAGTAAACCAAAGT+TGG | 0.491565 | 3_2:+86987936 | None:intergenic |
| TCTGCACTAAATTGGCCGGT+TGG | 0.503768 | 3_2:+86987694 | None:intergenic |
| AGATGAAGGTATCACAAAAT+GGG | 0.506219 | 3_2:-86987674 | Msa0434240:CDS |
| TGGTGGTGGTGGTCCTACTT+TGG | 0.509475 | 3_2:-86988097 | Msa0434240:CDS |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 3_2:+86987820 | None:intergenic |
| GCTCAGAATTACTGCTTCAA+AGG | 0.515724 | 3_2:-86987472 | Msa0434240:CDS |
| TTCATCTGCACTAAATTGGC+CGG | 0.515888 | 3_2:+86987690 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 3_2:+86988359 | None:intergenic |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.522597 | 3_2:+86988340 | None:intergenic |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 3_2:-86987340 | Msa0434240:CDS |
| AGCTGCGTGTGTAGAAGAAA+TGG | 0.529170 | 3_2:+86988191 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3_2:+86987408 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3_2:+86987805 | None:intergenic |
| TGCAGCAGATAACAACAGTA+CGG | 0.550766 | 3_2:+86987867 | None:intergenic |
| AATTCATGATAAAGCTACGC+AGG | 0.550930 | 3_2:-86987563 | Msa0434240:CDS |
| TGACTGAATGGTTTCAGTGA+AGG | 0.552685 | 3_2:+86988158 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 3_2:+86988010 | None:intergenic |
| GAAGGTATCACAAAATGGGT+AGG | 0.554568 | 3_2:-86987670 | Msa0434240:CDS |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.557488 | 3_2:+86987986 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 3_2:-86987859 | Msa0434240:CDS |
| GCAGTAATTCTGAGCGTATG+TGG | 0.561135 | 3_2:+86987480 | None:intergenic |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3_2:+86988255 | None:intergenic |
| CTGCAAATGCACAAAACAAG+TGG | 0.579073 | 3_2:+86988241 | None:intergenic |
| GGCCAATTTAGTGCAGATGA+AGG | 0.583988 | 3_2:-86987688 | Msa0434240:CDS |
| TTTAATGATAGCATTTGTAG+AGG | 0.584386 | 3_2:+86988326 | None:intergenic |
| AAGGTATCACAAAATGGGTA+GGG | 0.585197 | 3_2:-86987669 | Msa0434240:CDS |
| CACTCAGAGTATATCTGCCA+AGG | 0.585455 | 3_2:-86987425 | Msa0434240:CDS |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 3_2:+86987610 | None:intergenic |
| GATACTGCCAGTCAAGATCA+AGG | 0.589592 | 3_2:+86987980 | None:intergenic |
| GCAGCAGATAACAACAGTAC+GGG | 0.596002 | 3_2:+86987868 | None:intergenic |
| TACAGAGTGGAGAGCTGCTG+TGG | 0.596100 | 3_2:-86987917 | Msa0434240:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.604955 | 3_2:-86987862 | Msa0434240:CDS |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 3_2:+86988370 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 3_2:-86987457 | Msa0434240:CDS |
| ATTCATGATAAAGCTACGCA+GGG | 0.610111 | 3_2:-86987562 | Msa0434240:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 3_2:-86987863 | Msa0434240:CDS |
| ATTAGGGGCAGTGAAGTACA+AGG | 0.624997 | 3_2:-86987539 | Msa0434240:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 3_2:-86988003 | Msa0434240:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 3_2:+86988352 | None:intergenic |
| TGCAAATGCACAAAACAAGT+GGG | 0.643130 | 3_2:+86988242 | None:intergenic |
| ACAAATGCTATCATTAAAGG+TGG | 0.644210 | 3_2:-86988321 | Msa0434240:CDS |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 3_2:+86988277 | None:intergenic |
| TAAAGCTACGCAGGGATTAG+GGG | 0.652308 | 3_2:-86987554 | Msa0434240:CDS |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3_2:+86987806 | None:intergenic |
| AGAAGAAATGGTGACTTGGT+TGG | 0.669123 | 3_2:+86988203 | None:intergenic |
| GTGTAGAAGAAATGGTGACT+TGG | 0.674829 | 3_2:+86988199 | None:intergenic |
| TTGGTTTACTCATTACAGAG+TGG | 0.678345 | 3_2:-86987930 | Msa0434240:CDS |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 3_2:-86987823 | Msa0434240:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 3_2:+86987894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATGAATTCTATGTTTATT+AGG | + | chr3_2:86988137-86988156 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATGA+TGG | - | chr3_2:86988188-86988207 | Msa0434240:CDS | 20.0% |
| !! | ACAAGGATATAAAAAATGAT+GGG | - | chr3_2:86988189-86988208 | Msa0434240:CDS | 20.0% |
| !! | TCATGAATTCTATGTTTATT+AGG | + | chr3_2:86988137-86988156 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATGA+TGG | - | chr3_2:86988188-86988207 | Msa0434240:CDS | 20.0% |
| !! | ACAAGGATATAAAAAATGAT+GGG | - | chr3_2:86988189-86988208 | Msa0434240:CDS | 20.0% |
| ! | TTTAATGATAGCATTTGTAG+AGG | + | chr3_2:86987388-86987407 | None:intergenic | 25.0% |
| ! | TCTACAAATGCTATCATTAA+AGG | - | chr3_2:86987387-86987406 | Msa0434240:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3_2:86987677-86987696 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAGATAAAA+AGG | + | chr3_2:86987962-86987981 | None:intergenic | 25.0% |
| ! | CAAGGATATAAAAAATGATG+GGG | - | chr3_2:86988190-86988209 | Msa0434240:CDS | 25.0% |
| ! | ATATTGAACAAGACAACAAT+TGG | - | chr3_2:86988354-86988373 | Msa0434240:CDS | 25.0% |
| ! | TTTAATGATAGCATTTGTAG+AGG | + | chr3_2:86987388-86987407 | None:intergenic | 25.0% |
| ! | TCTACAAATGCTATCATTAA+AGG | - | chr3_2:86987387-86987406 | Msa0434240:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3_2:86987677-86987696 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAGATAAAA+AGG | + | chr3_2:86987962-86987981 | None:intergenic | 25.0% |
| ! | CAAGGATATAAAAAATGATG+GGG | - | chr3_2:86988190-86988209 | Msa0434240:CDS | 25.0% |
| ! | ATATTGAACAAGACAACAAT+TGG | - | chr3_2:86988354-86988373 | Msa0434240:CDS | 25.0% |
| TAGCATTTGTAGAGGAAAAT+TGG | + | chr3_2:86987380-86987399 | None:intergenic | 30.0% | |
| ACAAATGCTATCATTAAAGG+TGG | - | chr3_2:86987390-86987409 | Msa0434240:CDS | 30.0% | |
| CATTCAGTCAAAGAGTAATT+CGG | - | chr3_2:86987566-86987585 | Msa0434240:CDS | 30.0% | |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr3_2:86987588-86987607 | Msa0434240:CDS | 30.0% |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr3_2:86987591-86987610 | Msa0434240:CDS | 30.0% |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr3_2:86987778-86987797 | None:intergenic | 30.0% | |
| !! | AGATGAAGGTATCACAAAAT+GGG | - | chr3_2:86988037-86988056 | Msa0434240:CDS | 30.0% |
| ! | GTTTGTTTGGATATTTTGCT+TGG | - | chr3_2:86988330-86988349 | Msa0434240:CDS | 30.0% |
| TAGCATTTGTAGAGGAAAAT+TGG | + | chr3_2:86987380-86987399 | None:intergenic | 30.0% | |
| ACAAATGCTATCATTAAAGG+TGG | - | chr3_2:86987390-86987409 | Msa0434240:CDS | 30.0% | |
| CATTCAGTCAAAGAGTAATT+CGG | - | chr3_2:86987566-86987585 | Msa0434240:CDS | 30.0% | |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr3_2:86987588-86987607 | Msa0434240:CDS | 30.0% |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr3_2:86987591-86987610 | Msa0434240:CDS | 30.0% |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr3_2:86987778-86987797 | None:intergenic | 30.0% | |
| !! | AGATGAAGGTATCACAAAAT+GGG | - | chr3_2:86988037-86988056 | Msa0434240:CDS | 30.0% |
| ! | GTTTGTTTGGATATTTTGCT+TGG | - | chr3_2:86988330-86988349 | Msa0434240:CDS | 30.0% |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr3_2:86987374-86987393 | None:intergenic | 35.0% | |
| CTATCATTAAAGGTGGCTAT+TGG | - | chr3_2:86987397-86987416 | Msa0434240:CDS | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3_2:86987459-86987478 | None:intergenic | 35.0% | |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr3_2:86987460-86987479 | None:intergenic | 35.0% | |
| TGCAAATGCACAAAACAAGT+GGG | + | chr3_2:86987472-86987491 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3_2:86987497-86987516 | None:intergenic | 35.0% |
| CGAATTACTCTTTGACTGAA+TGG | + | chr3_2:86987568-86987587 | None:intergenic | 35.0% | |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3_2:86987630-86987649 | None:intergenic | 35.0% |
| !! | GGCACAAAAATTTGCTAACA+TGG | - | chr3_2:86987635-86987654 | Msa0434240:CDS | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr3_2:86987704-86987723 | None:intergenic | 35.0% |
| TTGGTTTACTCATTACAGAG+TGG | - | chr3_2:86987781-86987800 | Msa0434240:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3_2:86987911-86987930 | Msa0434240:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3_2:86987916-86987935 | Msa0434240:CDS | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3_2:86987917-86987936 | Msa0434240:CDS | 35.0% | |
| TACCTTCATCTGCACTAAAT+TGG | + | chr3_2:86988028-86988047 | None:intergenic | 35.0% | |
| !! | CAGATGAAGGTATCACAAAA+TGG | - | chr3_2:86988036-86988055 | Msa0434240:CDS | 35.0% |
| ! | AAGGTATCACAAAATGGGTA+GGG | - | chr3_2:86988042-86988061 | Msa0434240:CDS | 35.0% |
| TACCCTTCTATGGTTACAAA+TGG | - | chr3_2:86988099-86988118 | Msa0434240:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr3_2:86988104-86988123 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr3_2:86988105-86988124 | None:intergenic | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr3_2:86988106-86988125 | Msa0434240:CDS | 35.0% | |
| AATTCATGATAAAGCTACGC+AGG | - | chr3_2:86988148-86988167 | Msa0434240:CDS | 35.0% | |
| ATTCATGATAAAGCTACGCA+GGG | - | chr3_2:86988149-86988168 | Msa0434240:CDS | 35.0% | |
| CTCAGAATTACTGCTTCAAA+GGG | - | chr3_2:86988240-86988259 | Msa0434240:CDS | 35.0% | |
| ! | TCCAAACAAACCATTTTGCT+TGG | + | chr3_2:86988321-86988340 | None:intergenic | 35.0% |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr3_2:86987374-86987393 | None:intergenic | 35.0% | |
| CTATCATTAAAGGTGGCTAT+TGG | - | chr3_2:86987397-86987416 | Msa0434240:CDS | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3_2:86987459-86987478 | None:intergenic | 35.0% | |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr3_2:86987460-86987479 | None:intergenic | 35.0% | |
| TGCAAATGCACAAAACAAGT+GGG | + | chr3_2:86987472-86987491 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3_2:86987497-86987516 | None:intergenic | 35.0% |
| CGAATTACTCTTTGACTGAA+TGG | + | chr3_2:86987568-86987587 | None:intergenic | 35.0% | |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3_2:86987630-86987649 | None:intergenic | 35.0% |
| !! | GGCACAAAAATTTGCTAACA+TGG | - | chr3_2:86987635-86987654 | Msa0434240:CDS | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr3_2:86987704-86987723 | None:intergenic | 35.0% |
| TTGGTTTACTCATTACAGAG+TGG | - | chr3_2:86987781-86987800 | Msa0434240:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3_2:86987911-86987930 | Msa0434240:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3_2:86987916-86987935 | Msa0434240:CDS | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3_2:86987917-86987936 | Msa0434240:CDS | 35.0% | |
| TACCTTCATCTGCACTAAAT+TGG | + | chr3_2:86988028-86988047 | None:intergenic | 35.0% | |
| !! | CAGATGAAGGTATCACAAAA+TGG | - | chr3_2:86988036-86988055 | Msa0434240:CDS | 35.0% |
| ! | AAGGTATCACAAAATGGGTA+GGG | - | chr3_2:86988042-86988061 | Msa0434240:CDS | 35.0% |
| TACCCTTCTATGGTTACAAA+TGG | - | chr3_2:86988099-86988118 | Msa0434240:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr3_2:86988104-86988123 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr3_2:86988105-86988124 | None:intergenic | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr3_2:86988106-86988125 | Msa0434240:CDS | 35.0% | |
| AATTCATGATAAAGCTACGC+AGG | - | chr3_2:86988148-86988167 | Msa0434240:CDS | 35.0% | |
| ATTCATGATAAAGCTACGCA+GGG | - | chr3_2:86988149-86988168 | Msa0434240:CDS | 35.0% | |
| CTCAGAATTACTGCTTCAAA+GGG | - | chr3_2:86988240-86988259 | Msa0434240:CDS | 35.0% | |
| ! | TCCAAACAAACCATTTTGCT+TGG | + | chr3_2:86988321-86988340 | None:intergenic | 35.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr3_2:86987328-86987347 | None:intergenic | 40.0% |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3_2:86987362-86987381 | None:intergenic | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr3_2:86987437-86987456 | None:intergenic | 40.0% | |
| CTGCAAATGCACAAAACAAG+TGG | + | chr3_2:86987473-86987492 | None:intergenic | 40.0% | |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3_2:86987511-86987530 | None:intergenic | 40.0% |
| GTGTAGAAGAAATGGTGACT+TGG | + | chr3_2:86987515-86987534 | None:intergenic | 40.0% | |
| TGACTGAATGGTTTCAGTGA+AGG | + | chr3_2:86987556-86987575 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr3_2:86987594-86987613 | Msa0434240:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr3_2:86987597-86987616 | Msa0434240:CDS | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3_2:86987670-86987689 | None:intergenic | 40.0% |
| GCCAGAAATAACAACTTCCA+TGG | - | chr3_2:86987708-86987727 | Msa0434240:CDS | 40.0% | |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr3_2:86987712-86987731 | None:intergenic | 40.0% |
| GACGTTGAAAAGACCAACTT+TGG | - | chr3_2:86987762-86987781 | Msa0434240:CDS | 40.0% | |
| TGCAGCAGATAACAACAGTA+CGG | + | chr3_2:86987847-86987866 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3_2:86987908-86987927 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3_2:86987909-86987928 | None:intergenic | 40.0% | |
| TTCATCTGCACTAAATTGGC+CGG | + | chr3_2:86988024-86988043 | None:intergenic | 40.0% | |
| !! | GAAGGTATCACAAAATGGGT+AGG | - | chr3_2:86988041-86988060 | Msa0434240:CDS | 40.0% |
| ATCACAAAATGGGTAGGGTT+AGG | - | chr3_2:86988047-86988066 | Msa0434240:CDS | 40.0% | |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr3_2:86988077-86988096 | None:intergenic | 40.0% |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr3_2:86988074-86988093 | Msa0434240:CDS | 40.0% | |
| ATAAAGCTACGCAGGGATTA+GGG | - | chr3_2:86988156-86988175 | Msa0434240:CDS | 40.0% | |
| GCTCAGAATTACTGCTTCAA+AGG | - | chr3_2:86988239-86988258 | Msa0434240:CDS | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr3_2:86988254-86988273 | Msa0434240:CDS | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3_2:86988308-86988327 | Msa0434240:CDS | 40.0% | |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | - | chr3_2:86988317-86988336 | Msa0434240:CDS | 40.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr3_2:86988371-86988390 | Msa0434240:CDS | 40.0% | |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr3_2:86987328-86987347 | None:intergenic | 40.0% |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3_2:86987362-86987381 | None:intergenic | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr3_2:86987437-86987456 | None:intergenic | 40.0% | |
| CTGCAAATGCACAAAACAAG+TGG | + | chr3_2:86987473-86987492 | None:intergenic | 40.0% | |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3_2:86987511-86987530 | None:intergenic | 40.0% |
| GTGTAGAAGAAATGGTGACT+TGG | + | chr3_2:86987515-86987534 | None:intergenic | 40.0% | |
| TGACTGAATGGTTTCAGTGA+AGG | + | chr3_2:86987556-86987575 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr3_2:86987594-86987613 | Msa0434240:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr3_2:86987597-86987616 | Msa0434240:CDS | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3_2:86987670-86987689 | None:intergenic | 40.0% |
| GCCAGAAATAACAACTTCCA+TGG | - | chr3_2:86987708-86987727 | Msa0434240:CDS | 40.0% | |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr3_2:86987712-86987731 | None:intergenic | 40.0% |
| GACGTTGAAAAGACCAACTT+TGG | - | chr3_2:86987762-86987781 | Msa0434240:CDS | 40.0% | |
| TGCAGCAGATAACAACAGTA+CGG | + | chr3_2:86987847-86987866 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3_2:86987908-86987927 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3_2:86987909-86987928 | None:intergenic | 40.0% | |
| TTCATCTGCACTAAATTGGC+CGG | + | chr3_2:86988024-86988043 | None:intergenic | 40.0% | |
| !! | GAAGGTATCACAAAATGGGT+AGG | - | chr3_2:86988041-86988060 | Msa0434240:CDS | 40.0% |
| ATCACAAAATGGGTAGGGTT+AGG | - | chr3_2:86988047-86988066 | Msa0434240:CDS | 40.0% | |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr3_2:86988077-86988096 | None:intergenic | 40.0% |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr3_2:86988074-86988093 | Msa0434240:CDS | 40.0% | |
| ATAAAGCTACGCAGGGATTA+GGG | - | chr3_2:86988156-86988175 | Msa0434240:CDS | 40.0% | |
| GCTCAGAATTACTGCTTCAA+AGG | - | chr3_2:86988239-86988258 | Msa0434240:CDS | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr3_2:86988254-86988273 | Msa0434240:CDS | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3_2:86988308-86988327 | Msa0434240:CDS | 40.0% | |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | - | chr3_2:86988317-86988336 | Msa0434240:CDS | 40.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr3_2:86988371-86988390 | Msa0434240:CDS | 40.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr3_2:86987344-86987363 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr3_2:86987355-86987374 | None:intergenic | 45.0% | |
| AGCTGCGTGTGTAGAAGAAA+TGG | + | chr3_2:86987523-86987542 | None:intergenic | 45.0% | |
| !! | TTATCAATTGGTGGTGGTGG+TGG | - | chr3_2:86987600-86987619 | Msa0434240:CDS | 45.0% |
| GATACTGCCAGTCAAGATCA+AGG | + | chr3_2:86987734-86987753 | None:intergenic | 45.0% | |
| ! | GTCTTTTCAACGTCTGAGGA+TGG | + | chr3_2:86987756-86987775 | None:intergenic | 45.0% |
| !!! | GTTGGTCTTTTCAACGTCTG+AGG | + | chr3_2:86987760-86987779 | None:intergenic | 45.0% |
| GCAGCAGATAACAACAGTAC+GGG | + | chr3_2:86987846-86987865 | None:intergenic | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr3_2:86987848-86987867 | Msa0434240:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr3_2:86987849-86987868 | Msa0434240:CDS | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr3_2:86987888-86987907 | Msa0434240:CDS | 45.0% |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr3_2:86987894-86987913 | None:intergenic | 45.0% | |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3_2:86988002-86988021 | None:intergenic | 45.0% |
| !! | GGTTGGGTTTTTCAAAGGAG+CGG | + | chr3_2:86988003-86988022 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+CGG | - | chr3_2:86988002-86988021 | Msa0434240:CDS | 45.0% |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr3_2:86988023-86988042 | Msa0434240:CDS | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr3_2:86988089-86988108 | Msa0434240:CDS | 45.0% | |
| GATAAAGCTACGCAGGGATT+AGG | - | chr3_2:86988155-86988174 | Msa0434240:CDS | 45.0% | |
| TAAAGCTACGCAGGGATTAG+GGG | - | chr3_2:86988157-86988176 | Msa0434240:CDS | 45.0% | |
| ATTAGGGGCAGTGAAGTACA+AGG | - | chr3_2:86988172-86988191 | Msa0434240:CDS | 45.0% | |
| GCAGTAATTCTGAGCGTATG+TGG | + | chr3_2:86988234-86988253 | None:intergenic | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr3_2:86988249-86988268 | Msa0434240:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3_2:86988286-86988305 | Msa0434240:CDS | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3_2:86988306-86988325 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr3_2:86987344-86987363 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr3_2:86987355-86987374 | None:intergenic | 45.0% | |
| AGCTGCGTGTGTAGAAGAAA+TGG | + | chr3_2:86987523-86987542 | None:intergenic | 45.0% | |
| !! | TTATCAATTGGTGGTGGTGG+TGG | - | chr3_2:86987600-86987619 | Msa0434240:CDS | 45.0% |
| GATACTGCCAGTCAAGATCA+AGG | + | chr3_2:86987734-86987753 | None:intergenic | 45.0% | |
| ! | GTCTTTTCAACGTCTGAGGA+TGG | + | chr3_2:86987756-86987775 | None:intergenic | 45.0% |
| !!! | GTTGGTCTTTTCAACGTCTG+AGG | + | chr3_2:86987760-86987779 | None:intergenic | 45.0% |
| GCAGCAGATAACAACAGTAC+GGG | + | chr3_2:86987846-86987865 | None:intergenic | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr3_2:86987848-86987867 | Msa0434240:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr3_2:86987849-86987868 | Msa0434240:CDS | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr3_2:86987888-86987907 | Msa0434240:CDS | 45.0% |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr3_2:86987894-86987913 | None:intergenic | 45.0% | |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3_2:86988002-86988021 | None:intergenic | 45.0% |
| !! | GGTTGGGTTTTTCAAAGGAG+CGG | + | chr3_2:86988003-86988022 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+CGG | - | chr3_2:86988002-86988021 | Msa0434240:CDS | 45.0% |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr3_2:86988023-86988042 | Msa0434240:CDS | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr3_2:86988089-86988108 | Msa0434240:CDS | 45.0% | |
| GATAAAGCTACGCAGGGATT+AGG | - | chr3_2:86988155-86988174 | Msa0434240:CDS | 45.0% | |
| TAAAGCTACGCAGGGATTAG+GGG | - | chr3_2:86988157-86988176 | Msa0434240:CDS | 45.0% | |
| ATTAGGGGCAGTGAAGTACA+AGG | - | chr3_2:86988172-86988191 | Msa0434240:CDS | 45.0% | |
| GCAGTAATTCTGAGCGTATG+TGG | + | chr3_2:86988234-86988253 | None:intergenic | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr3_2:86988249-86988268 | Msa0434240:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3_2:86988286-86988305 | Msa0434240:CDS | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3_2:86988306-86988325 | None:intergenic | 45.0% | |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3_2:86987665-86987684 | None:intergenic | 50.0% |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr3_2:86987724-86987743 | Msa0434240:CDS | 50.0% |
| TAACAACAGTACGGGCTTGC+CGG | + | chr3_2:86987838-86987857 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr3_2:86987852-86987871 | Msa0434240:CDS | 50.0% | |
| !! | TGGCCGGTTGGGTTTTTCAA+AGG | + | chr3_2:86988008-86988027 | None:intergenic | 50.0% |
| CTGCACTAAATTGGCCGGTT+GGG | + | chr3_2:86988019-86988038 | None:intergenic | 50.0% | |
| TCTGCACTAAATTGGCCGGT+TGG | + | chr3_2:86988020-86988039 | None:intergenic | 50.0% | |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3_2:86987665-86987684 | None:intergenic | 50.0% |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr3_2:86987724-86987743 | Msa0434240:CDS | 50.0% |
| TAACAACAGTACGGGCTTGC+CGG | + | chr3_2:86987838-86987857 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr3_2:86987852-86987871 | Msa0434240:CDS | 50.0% | |
| !! | TGGCCGGTTGGGTTTTTCAA+AGG | + | chr3_2:86988008-86988027 | None:intergenic | 50.0% |
| CTGCACTAAATTGGCCGGTT+GGG | + | chr3_2:86988019-86988038 | None:intergenic | 50.0% | |
| TCTGCACTAAATTGGCCGGT+TGG | + | chr3_2:86988020-86988039 | None:intergenic | 50.0% | |
| !! | TCAATTGGTGGTGGTGGTGG+TGG | - | chr3_2:86987603-86987622 | Msa0434240:CDS | 55.0% |
| !! | TGGTGGTGGTGGTCCTACTT+TGG | - | chr3_2:86987614-86987633 | Msa0434240:CDS | 55.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr3_2:86987728-86987747 | None:intergenic | 55.0% | |
| TACAGAGTGGAGAGCTGCTG+TGG | - | chr3_2:86987794-86987813 | Msa0434240:CDS | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3_2:86987984-86988003 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3_2:86987999-86988018 | None:intergenic | 55.0% |
| !! | TCAATTGGTGGTGGTGGTGG+TGG | - | chr3_2:86987603-86987622 | Msa0434240:CDS | 55.0% |
| !! | TGGTGGTGGTGGTCCTACTT+TGG | - | chr3_2:86987614-86987633 | Msa0434240:CDS | 55.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr3_2:86987728-86987747 | None:intergenic | 55.0% | |
| TACAGAGTGGAGAGCTGCTG+TGG | - | chr3_2:86987794-86987813 | Msa0434240:CDS | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3_2:86987984-86988003 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3_2:86987999-86988018 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr3_2:86987816-86987835 | Msa0434240:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr3_2:86987820-86987839 | None:intergenic | 60.0% | |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr3_2:86987816-86987835 | Msa0434240:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr3_2:86987820-86987839 | None:intergenic | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr3_2:86987808-86987827 | Msa0434240:CDS | 65.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr3_2:86987808-86987827 | Msa0434240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86987315 | 86988418 | 86987315 | ID=Msa0434240;Name=Msa0434240 |
| chr3_2 | mRNA | 86987315 | 86988418 | 86987315 | ID=Msa0434240-mRNA-1;Parent=Msa0434240;Name=Msa0434240-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|367 |
| chr3_2 | exon | 86987315 | 86988418 | 86987315 | ID=Msa0434240-mRNA-1:exon:25341;Parent=Msa0434240-mRNA-1 |
| chr3_2 | CDS | 86987315 | 86988418 | 86987315 | ID=Msa0434240-mRNA-1:cds;Parent=Msa0434240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
