AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1095480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095480 MtrunA17_Chr7g0223351 94.318 176 10 0 168 343 1 176 4.24e-121 346
Msa1095480 MtrunA17_Chr7g0223351 83.237 173 21 2 1 165 1 173 8.16e-98 287
Msa1095480 MtrunA17_Chr7g0223361 69.942 173 51 1 168 339 1 173 7.42e-83 249
Msa1095480 MtrunA17_Chr7g0223361 67.630 173 47 2 1 164 1 173 5.88e-79 239
Msa1095480 MtrunA17_Chr5g0394631 35.789 380 193 12 7 336 20 398 6.22e-64 208
Msa1095480 MtrunA17_Chr7g0273661 58.861 158 63 2 168 323 1 158 2.26e-57 183
Msa1095480 MtrunA17_Chr7g0273661 61.333 150 52 2 7 150 7 156 1.51e-56 181
Msa1095480 MtrunA17_Chr1g0204951 45.732 164 86 3 174 334 22 185 4.67e-40 139
Msa1095480 MtrunA17_Chr1g0204951 42.073 164 84 4 7 159 22 185 4.91e-33 121
Msa1095480 MtrunA17_Chr1g0204971 42.771 166 92 3 174 336 22 187 3.54e-36 129
Msa1095480 MtrunA17_Chr1g0204971 39.157 166 90 3 7 161 22 187 3.38e-30 114
Msa1095480 MtrunA17_Chr5g0394621 41.667 168 93 3 174 336 20 187 3.36e-35 127
Msa1095480 MtrunA17_Chr5g0394621 39.881 168 88 4 7 161 20 187 1.77e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095480 AT2G32020.1 40.909 176 100 3 165 338 9 182 4.56e-44 150
Msa1095480 AT2G32020.1 40.936 171 93 4 1 163 12 182 4.49e-43 147
Msa1095480 AT3G22560.1 45.029 171 90 3 170 336 2 172 2.44e-42 145
Msa1095480 AT3G22560.1 42.690 171 86 4 3 161 2 172 1.38e-34 125
Msa1095480 AT2G32030.1 40.361 166 95 3 175 338 24 187 3.62e-40 140
Msa1095480 AT2G32030.1 40.854 164 89 4 8 163 24 187 6.12e-39 137

Find 77 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTATTGGGTTCAATTAT+TGG 0.148532 7_3:+18341912 Msa1095480:CDS
TGCTATTGGGTTCAATTATT+GGG 0.160306 7_3:+18341913 Msa1095480:CDS
GCAAAGTTTAAAGCAGATTT+AGG 0.191234 7_3:+18344990 Msa1095480:CDS
TGCTATTGGGTTCAACTATT+GGG 0.215244 7_3:+18345016 Msa1095480:CDS
TGCAAAGTTTAAAGCAGATT+TGG 0.219727 7_3:+18341886 Msa1095480:intron
ATGCTATTGGGTTCAACTAT+TGG 0.242032 7_3:+18345015 Msa1095480:CDS
TCCTGATTTGGTAAGGTTGC+AGG 0.261225 7_3:+18345097 Msa1095480:CDS
GCAGATTTAGGTTATGCTAT+TGG 0.268381 7_3:+18345002 Msa1095480:CDS
TTCTGACTTGCAAAGGTTGC+AGG 0.286836 7_3:+18341994 Msa1095480:CDS
ATTCCAAGACTTTCCTGATT+TGG 0.305046 7_3:+18345085 Msa1095480:CDS
CAGATTTAGGTTATGCTATT+GGG 0.314452 7_3:+18345003 Msa1095480:CDS
TGTCTTGATGATCACTCTAT+TGG 0.344658 7_3:+18344939 Msa1095480:CDS
GCAAAGTTTAAAGCAGATTT+GGG 0.349624 7_3:+18341887 Msa1095480:intron
CAAAAGAATCTTCACTGCTT+TGG 0.353745 7_3:-18345054 None:intergenic
TTCTGAACAATCCCTCCCTT+TGG 0.370350 7_3:-18345175 None:intergenic
GCCTGCAACCTTACCAAATC+AGG 0.389988 7_3:-18345098 None:intergenic
TTTGCAAGTCAGAAAACTCT+TGG 0.405968 7_3:-18341985 None:intergenic
TCAGCATCACTTTCTTTGAA+TGG 0.406038 7_3:-18344789 None:intergenic
GAAAGGGAATTTATAACAAA+GGG 0.412673 7_3:+18345195 Msa1095480:CDS
CATCAAGACATATTGATTGT+TGG 0.420749 7_3:-18341823 None:intergenic
CATCAAGACATATTGATTGT+TGG 0.420749 7_3:-18344926 None:intergenic
TCGGCATCACTTTCTTTGAA+TGG 0.427869 7_3:-18341686 None:intergenic
CAAAGACTGTTGGAAAAGGT+TGG 0.435336 7_3:+18345149 Msa1095480:CDS
TTCTCAAAGACTGTTGGAAA+AGG 0.441158 7_3:+18345145 Msa1095480:CDS
TTAAACTTTGCATCAAGATA+AGG 0.441955 7_3:-18344978 None:intergenic
CTGCTTTGGTGGCTACACCT+TGG 0.450078 7_3:-18345040 None:intergenic
AGACATATTGATTGTTGGAA+TGG 0.451178 7_3:-18341818 None:intergenic
AGACATATTGATTGTTGGAA+TGG 0.451178 7_3:-18344921 None:intergenic
CATCACTTTCTTTGAATGGC+CGG 0.455673 7_3:-18344785 None:intergenic
CATCACTTTCTTTGAATGGC+CGG 0.466310 7_3:-18341682 None:intergenic
CTTTGAGAAGCCATGTTCTC+CGG 0.475896 7_3:-18345131 None:intergenic
TGCTGACGATGTGTTGTTGT+GGG 0.482447 7_3:+18344806 Msa1095480:CDS
AAGACTTTCCTGATTTGGTA+AGG 0.487902 7_3:+18345090 Msa1095480:CDS
GATTGGAGTTGTGTAAATCA+AGG 0.488742 7_3:+18341756 Msa1095480:CDS
GGGTTCAATTATTGGGGCCA+AGG 0.491840 7_3:+18341920 Msa1095480:CDS
CATGGCTTCTCAAAGACTGT+TGG 0.500304 7_3:+18345139 Msa1095480:CDS
TTACCAAATCAGGAAAGTCT+TGG 0.502664 7_3:-18345088 None:intergenic
GCTATTGGGTTCAATTATTG+GGG 0.503790 7_3:+18341914 Msa1095480:CDS
TGTCTTGATGATCACTCCAT+TGG 0.505623 7_3:+18341836 Msa1095480:CDS
CGATGAAATTCCTCATGCTA+AGG 0.513932 7_3:+18345256 Msa1095480:CDS
GGGTTCAACTATTGGGGCCA+AGG 0.514130 7_3:+18345023 Msa1095480:CDS
GATTGGAGTTATGTAAATCA+AGG 0.516459 7_3:+18344859 Msa1095480:CDS
AGTCATTCAAAATACTCGAT+TGG 0.520421 7_3:+18341739 Msa1095480:CDS
AAGAATCTTCACTGCTTTGG+TGG 0.526653 7_3:-18345051 None:intergenic
CATGGCTTCACAAAGGCTGT+TGG 0.533558 7_3:+18342036 Msa1095480:CDS
GCTATTGGGTTCAACTATTG+GGG 0.535162 7_3:+18345017 Msa1095480:CDS
TGCCGACGATGTGTTGTTGT+GGG 0.540042 7_3:+18341703 Msa1095480:CDS
AGAAAGGGAATTTATAACAA+AGG 0.541022 7_3:+18345194 Msa1095480:CDS
GTTGCAGGCTAATACTCGTC+CGG 0.543008 7_3:+18345112 Msa1095480:CDS
GATGAAATTCCTCATGCTAA+GGG 0.544681 7_3:+18345257 Msa1095480:CDS
TGGAAAAGGTTGGTTTCCAA+AGG 0.552140 7_3:+18345159 Msa1095480:CDS
AGGGAGGGATTGTTCAGAAA+GGG 0.555894 7_3:+18345179 Msa1095480:CDS
TAATACTCGTCCGGAGAACA+TGG 0.558191 7_3:+18345121 Msa1095480:CDS
AGTCATGCAATATATGCGAT+TGG 0.560410 7_3:+18344842 Msa1095480:CDS
GGAAAAGGTTGGTTTCCAAA+GGG 0.561564 7_3:+18345160 Msa1095480:CDS
AAAGTTGGCTTTCATAGGGA+GGG 0.561963 7_3:+18342061 Msa1095480:CDS
ATGCCGACGATGTGTTGTTG+TGG 0.566383 7_3:+18341702 Msa1095480:CDS
TAGGGAGGGATTGTTCAGAA+AGG 0.567572 7_3:+18342075 Msa1095480:CDS
ATGCTGACGATGTGTTGTTG+TGG 0.569510 7_3:+18344805 Msa1095480:CDS
AAAGGTTGGTTTCCAAAGGG+AGG 0.574627 7_3:+18345163 Msa1095480:CDS
ATTGGAGTTGTGTAAATCAA+GGG 0.577493 7_3:+18341757 Msa1095480:CDS
ATGAGTCAAGGATCACTCTC+CGG 0.583353 7_3:+18341663 Msa1095480:CDS
AAGAGTCAAGGATCACTCTC+CGG 0.583353 7_3:+18344766 Msa1095480:CDS
AAGGGAGGGATTGTTCAGAA+AGG 0.588499 7_3:+18345178 Msa1095480:CDS
ATTGGAGTTATGTAAATCAA+GGG 0.589655 7_3:+18344860 Msa1095480:CDS
AAGGTTGGTTTCCAAAGGGA+GGG 0.591625 7_3:+18345164 Msa1095480:CDS
AAAAGTTGGCTTTCATAGGG+AGG 0.608005 7_3:+18342060 Msa1095480:CDS
ACTAATTAACCCTTAGCATG+AGG 0.612515 7_3:-18345266 None:intergenic
ACTAATCAAACAACATCATG+AGG 0.616668 7_3:-18342163 None:intergenic
TGCCCACAACAACACATCGT+CGG 0.630490 7_3:-18341705 None:intergenic
TTATAACAAAGGGAATGTAG+AGG 0.632962 7_3:+18345205 Msa1095480:CDS
CTTAGCATGAGGAATTTCAT+CGG 0.640114 7_3:-18345255 None:intergenic
TGGGAATAGATCATGAGTCA+AGG 0.642231 7_3:+18341651 Msa1095480:CDS
TGGCAATAGATCAAGAGTCA+AGG 0.642231 7_3:+18344754 Msa1095480:CDS
TAATATTCTTGTAGACAACA+TGG 0.652110 7_3:+18342018 Msa1095480:CDS
ACTTTGCATCAAGATAAGGA+AGG 0.680492 7_3:-18344974 None:intergenic
TAGACAACATGGCTTCACAA+AGG 0.690615 7_3:+18342029 Msa1095480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAATATTATAAAAAA+AGG + chr7_3:18343215-18343234 Msa1095480:intron 0.0%
!! CTATTATAAAAAAAAAAATC+TGG + chr7_3:18344046-18344065 Msa1095480:intron 10.0%
!!! AAAATAAGATCATTTGTTTT+TGG - chr7_3:18343073-18343092 None:intergenic 15.0%
!!! TCTTTTTCTTTTTTTAAGTT+AGG - chr7_3:18343272-18343291 None:intergenic 15.0%
!! AAAAAAAGAAAAAGAAAAGA+AGG + chr7_3:18343277-18343296 Msa1095480:intron 15.0%
!! TATTACATATGATTTCTTTA+GGG - chr7_3:18343317-18343336 None:intergenic 15.0%
!! TTATTACATATGATTTCTTT+AGG - chr7_3:18343318-18343337 None:intergenic 15.0%
!! AAATCATATGTAATAATAGA+AGG + chr7_3:18343322-18343341 Msa1095480:intron 15.0%
!!! TGTTATTTGAAAAATCTATT+TGG + chr7_3:18343808-18343827 Msa1095480:intron 15.0%
!!! CTTTTTTCTTTGTAAATTAT+GGG - chr7_3:18343851-18343870 None:intergenic 15.0%
!!! ACTTTTTTCTTTGTAAATTA+TGG - chr7_3:18343852-18343871 None:intergenic 15.0%
!!! TTTTTTTTATAATAGTTGGT+GGG - chr7_3:18344041-18344060 None:intergenic 15.0%
!!! TTTTTTTTTATAATAGTTGG+TGG - chr7_3:18344042-18344061 None:intergenic 15.0%
!! GTGATATAGATATATTATTT+AGG + chr7_3:18344475-18344494 Msa1095480:intron 15.0%
!!! ATAGATATATTATTTAGGAT+TGG + chr7_3:18344480-18344499 Msa1095480:intron 15.0%
!! TTAAACTTTGCATAAACAAT+TGG - chr7_3:18341878-18341897 None:intergenic 20.0%
!! AAAACAACAGAAATACAAAT+GGG - chr7_3:18342320-18342339 None:intergenic 20.0%
!! AAAAACAACAGAAATACAAA+TGG - chr7_3:18342321-18342340 None:intergenic 20.0%
!! CTCAAATTAATAGCATAAAA+CGG - chr7_3:18342696-18342715 None:intergenic 20.0%
!!! TTATGCTATTAATTTGAGTT+TGG + chr7_3:18342698-18342717 Msa1095480:intron 20.0%
!! GAAACATATATATGCAAATT+AGG + chr7_3:18343150-18343169 Msa1095480:intron 20.0%
!! ATATTTATATATGAGACAGA+TGG - chr7_3:18343206-18343225 None:intergenic 20.0%
!! AAGACAACATAACATATATT+AGG + chr7_3:18343502-18343521 Msa1095480:intron 20.0%
!! AGACAACATAACATATATTA+GGG + chr7_3:18343503-18343522 Msa1095480:intron 20.0%
!! TAAGTTAAATGTGATTAAGA+GGG - chr7_3:18343782-18343801 None:intergenic 20.0%
!!! TAGAAAGATTTCTTCAATTT+TGG + chr7_3:18344146-18344165 Msa1095480:intron 20.0%
!! TGTGTATATAGTTTATTTAC+TGG + chr7_3:18344358-18344377 Msa1095480:intron 20.0%
!! AATCATTACACAAGTATATA+AGG - chr7_3:18344588-18344607 None:intergenic 20.0%
!! ATTTATATACCAAAAGTGAA+TGG - chr7_3:18344694-18344713 None:intergenic 20.0%
! AAGTACAAAAACAATTCCAA+TGG - chr7_3:18341855-18341874 None:intergenic 25.0%
! TAATATTCTTGTAGACAACA+TGG + chr7_3:18342018-18342037 Msa1095480:CDS 25.0%
!! TGCATATATTTTCAGTTTCT+TGG + chr7_3:18342126-18342145 Msa1095480:CDS 25.0%
!! CTTCTCTCTTATATTTTCAT+AGG + chr7_3:18342252-18342271 Msa1095480:intron 25.0%
!!! GTTTTGAGTCACTTTTTTTT+GGG + chr7_3:18342284-18342303 Msa1095480:intron 25.0%
!! TTTTATCTCCCTTAAATTAG+TGG + chr7_3:18342339-18342358 Msa1095480:intron 25.0%
! AATGAAAAATCAGATCTATG+TGG - chr7_3:18342368-18342387 None:intergenic 25.0%
! GAATTAGTAATCGATCAAAA+CGG - chr7_3:18342544-18342563 None:intergenic 25.0%
!!! ATTTACTCCTACACATTTTT+TGG + chr7_3:18342884-18342903 Msa1095480:intron 25.0%
! ATATCAACCAAAAAATGTGT+AGG - chr7_3:18342894-18342913 None:intergenic 25.0%
! GATGACAAATATACAAAAGA+GGG + chr7_3:18343237-18343256 Msa1095480:intron 25.0%
! AATACAATTCAAGGTTCTAT+GGG - chr7_3:18343361-18343380 None:intergenic 25.0%
! TAATACAATTCAAGGTTCTA+TGG - chr7_3:18343362-18343381 None:intergenic 25.0%
! TGTTTCTTTGTCAAATAAGA+CGG + chr7_3:18343473-18343492 Msa1095480:intron 25.0%
! ATGGTAAATCCAATTGTTAA+AGG + chr7_3:18343712-18343731 Msa1095480:intron 25.0%
! TGGTAAATCCAATTGTTAAA+GGG + chr7_3:18343713-18343732 Msa1095480:intron 25.0%
! ATTAAATGAGTTTAAGAAGG+AGG + chr7_3:18343743-18343762 Msa1095480:intron 25.0%
! CTAAGTTAAATGTGATTAAG+AGG - chr7_3:18343783-18343802 None:intergenic 25.0%
!! CTTAATCACATTTAACTTAG+AGG + chr7_3:18343783-18343802 Msa1095480:intron 25.0%
! AGAAAAAAGTAGTATTAGCA+CGG + chr7_3:18343862-18343881 Msa1095480:intron 25.0%
! ACTTTATCTCTCTATTGTTA+TGG - chr7_3:18343891-18343910 None:intergenic 25.0%
! CAATAGAGAGATAAAGTTAA+AGG + chr7_3:18343894-18343913 Msa1095480:intron 25.0%
! AAGTATGAGAAAATCTTCTA+TGG + chr7_3:18344176-18344195 Msa1095480:intron 25.0%
! AATTTAACTGTCTCAATTCT+CGG - chr7_3:18344408-18344427 None:intergenic 25.0%
!! TATTTAGGATTGGAATGAAT+AGG + chr7_3:18344490-18344509 Msa1095480:intron 25.0%
!! ATGATATGGCTAAGATATTT+TGG - chr7_3:18344718-18344737 None:intergenic 25.0%
! ACCTCAATATGTTAATGATA+TGG - chr7_3:18344732-18344751 None:intergenic 25.0%
! ATTGGAGTTATGTAAATCAA+GGG + chr7_3:18344860-18344879 Msa1095480:CDS 25.0%
! TTAAACTTTGCATCAAGATA+AGG - chr7_3:18344981-18345000 None:intergenic 25.0%
! AGAAAGGGAATTTATAACAA+AGG + chr7_3:18345194-18345213 Msa1095480:CDS 25.0%
! GAAAGGGAATTTATAACAAA+GGG + chr7_3:18345195-18345214 Msa1095480:CDS 25.0%
AGTCATTCAAAATACTCGAT+TGG + chr7_3:18341739-18341758 Msa1095480:CDS 30.0%
ATTGGAGTTGTGTAAATCAA+GGG + chr7_3:18341757-18341776 Msa1095480:CDS 30.0%
! AGACATATTGATTGTTGGAA+TGG - chr7_3:18341821-18341840 None:intergenic 30.0%
! CATCAAGACATATTGATTGT+TGG - chr7_3:18341826-18341845 None:intergenic 30.0%
! TGCAAAGTTTAAAGCAGATT+TGG + chr7_3:18341886-18341905 Msa1095480:intron 30.0%
! GCAAAGTTTAAAGCAGATTT+GGG + chr7_3:18341887-18341906 Msa1095480:intron 30.0%
! TTGCTATTGGGTTCAATTAT+TGG + chr7_3:18341912-18341931 Msa1095480:CDS 30.0%
TGCTATTGGGTTCAATTATT+GGG + chr7_3:18341913-18341932 Msa1095480:CDS 30.0%
! AGAAAGGTTTTTCATCAGAA+AGG + chr7_3:18342091-18342110 Msa1095480:intron 30.0%
! GAAAGGTTTTTCATCAGAAA+GGG + chr7_3:18342092-18342111 Msa1095480:intron 30.0%
ACTAATCAAACAACATCATG+AGG - chr7_3:18342166-18342185 None:intergenic 30.0%
! ATATTTTCATAGGAGATCAG+TGG + chr7_3:18342262-18342281 Msa1095480:intron 30.0%
!!! GGTTTTGAGTCACTTTTTTT+TGG + chr7_3:18342283-18342302 Msa1095480:intron 30.0%
TCTAAGTTAATCGCATAAAG+CGG - chr7_3:18342665-18342684 None:intergenic 30.0%
GGATGACAAATATACAAAAG+AGG + chr7_3:18343236-18343255 Msa1095480:intron 30.0%
ATACAATTCAAGGTTCTATG+GGG - chr7_3:18343360-18343379 None:intergenic 30.0%
CATCATGGTAATACAATTCA+AGG - chr7_3:18343370-18343389 None:intergenic 30.0%
TGATCTCTATTACAGTCAAT+AGG - chr7_3:18343583-18343602 None:intergenic 30.0%
TAAAGATTCTATCTCTGACA+TGG + chr7_3:18343693-18343712 Msa1095480:intron 30.0%
GGCATTAAATGAGTTTAAGA+AGG + chr7_3:18343740-18343759 Msa1095480:intron 30.0%
TTGAAGAAATCTTTCTACCT+CGG - chr7_3:18344143-18344162 None:intergenic 30.0%
ATTTAACTGTCTCAATTCTC+GGG - chr7_3:18344407-18344426 None:intergenic 30.0%
ATCTCGTATTATAATACCTC+GGG - chr7_3:18344454-18344473 None:intergenic 30.0%
GATCTCGTATTATAATACCT+CGG - chr7_3:18344455-18344474 None:intergenic 30.0%
! TCATTCTAACCATTCACTTT+TGG + chr7_3:18344682-18344701 Msa1095480:intron 30.0%
GCCATATCATTAACATATTG+AGG + chr7_3:18344728-18344747 Msa1095480:intron 30.0%
TCATTAACATATTGAGGTCA+TGG + chr7_3:18344734-18344753 Msa1095480:intron 30.0%
GATTGGAGTTATGTAAATCA+AGG + chr7_3:18344859-18344878 Msa1095480:CDS 30.0%
! AGACATATTGATTGTTGGAA+TGG - chr7_3:18341821-18341840 None:intergenic 30.0%
! CATCAAGACATATTGATTGT+TGG - chr7_3:18341826-18341845 None:intergenic 30.0%
! GCAAAGTTTAAAGCAGATTT+AGG + chr7_3:18341887-18341906 Msa1095480:intron 30.0%
! CAGATTTAGGTTATGCTATT+GGG + chr7_3:18345003-18345022 Msa1095480:CDS 30.0%
TTATAACAAAGGGAATGTAG+AGG + chr7_3:18345205-18345224 Msa1095480:CDS 30.0%
GATTGGAGTTGTGTAAATCA+AGG + chr7_3:18341756-18341775 Msa1095480:CDS 35.0%
!!! CAGATTTGGGTTTTGCTATT+GGG + chr7_3:18341900-18341919 Msa1095480:CDS 35.0%
GCTATTGGGTTCAATTATTG+GGG + chr7_3:18341914-18341933 Msa1095480:CDS 35.0%
!! GAGAATCTTAACTGCTTTTG+TGG - chr7_3:18341951-18341970 None:intergenic 35.0%
TTTGCAAGTCAGAAAACTCT+TGG - chr7_3:18341988-18342007 None:intergenic 35.0%
!! AAGAGTTTTCTGACTTGCAA+AGG + chr7_3:18341987-18342006 Msa1095480:CDS 35.0%
!! TGGAAAAAGTTGGCTTTCAT+AGG + chr7_3:18342056-18342075 Msa1095480:CDS 35.0%
!! GGAAAAAGTTGGCTTTCATA+GGG + chr7_3:18342057-18342076 Msa1095480:CDS 35.0%
! AGACCATTTTCTCTCAAAAG+TGG + chr7_3:18342187-18342206 Msa1095480:intron 35.0%
!! AGACCACTTTTGAGAGAAAA+TGG - chr7_3:18342193-18342212 None:intergenic 35.0%
TCTCTCAAAAGTGGTCTATT+TGG + chr7_3:18342196-18342215 Msa1095480:intron 35.0%
!!! GAGTCACTTTTTTTTGGGTA+TGG + chr7_3:18342289-18342308 Msa1095480:intron 35.0%
TGTGGACACCACTAATTTAA+GGG - chr7_3:18342350-18342369 None:intergenic 35.0%
ATGTGGACACCACTAATTTA+AGG - chr7_3:18342351-18342370 None:intergenic 35.0%
! CTTTTCTTCGATGAATCATG+AGG + chr7_3:18343110-18343129 Msa1095480:intron 35.0%
TATATATGAGACAGATGGCA+CGG - chr7_3:18343201-18343220 None:intergenic 35.0%
GACAAATATACAAAAGAGGG+AGG + chr7_3:18343240-18343259 Msa1095480:intron 35.0%
ATATACAAAAGAGGGAGGAT+TGG + chr7_3:18343245-18343264 Msa1095480:intron 35.0%
GATGGAATATTTGCTCATCA+TGG - chr7_3:18343385-18343404 None:intergenic 35.0%
GAGCAAATATTCCATCATTG+AGG + chr7_3:18343389-18343408 Msa1095480:intron 35.0%
ATATTCCATCATTGAGGAGT+CGG + chr7_3:18343395-18343414 Msa1095480:intron 35.0%
ATCCAATTGTTAAAGGGTTG+AGG + chr7_3:18343719-18343738 Msa1095480:intron 35.0%
! GAGTTGTTTCCTATGTTAGT+GGG - chr7_3:18344095-18344114 None:intergenic 35.0%
! TGAGTTGTTTCCTATGTTAG+TGG - chr7_3:18344096-18344115 None:intergenic 35.0%
TAGGATTGGAATGAATAGGA+AGG + chr7_3:18344494-18344513 Msa1095480:intron 35.0%
TTAGAATGATTGAACTGTGC+GGG - chr7_3:18344671-18344690 None:intergenic 35.0%
GTTAGAATGATTGAACTGTG+CGG - chr7_3:18344672-18344691 None:intergenic 35.0%
TCAGCATCACTTTCTTTGAA+TGG - chr7_3:18344792-18344811 None:intergenic 35.0%
AGTCATGCAATATATGCGAT+TGG + chr7_3:18344842-18344861 Msa1095480:CDS 35.0%
! TGTCTTGATGATCACTCTAT+TGG + chr7_3:18344939-18344958 Msa1095480:CDS 35.0%
ACTTTGCATCAAGATAAGGA+AGG - chr7_3:18344977-18344996 None:intergenic 35.0%
! GCAGATTTAGGTTATGCTAT+TGG + chr7_3:18345002-18345021 Msa1095480:CDS 35.0%
ATGCTATTGGGTTCAACTAT+TGG + chr7_3:18345015-18345034 Msa1095480:CDS 35.0%
TGCTATTGGGTTCAACTATT+GGG + chr7_3:18345016-18345035 Msa1095480:CDS 35.0%
CAAAAGAATCTTCACTGCTT+TGG - chr7_3:18345057-18345076 None:intergenic 35.0%
ATTCCAAGACTTTCCTGATT+TGG + chr7_3:18345085-18345104 Msa1095480:CDS 35.0%
TTACCAAATCAGGAAAGTCT+TGG - chr7_3:18345091-18345110 None:intergenic 35.0%
!! AAGACTTTCCTGATTTGGTA+AGG + chr7_3:18345090-18345109 Msa1095480:CDS 35.0%
TTCTCAAAGACTGTTGGAAA+AGG + chr7_3:18345145-18345164 Msa1095480:CDS 35.0%
CTTAGCATGAGGAATTTCAT+CGG - chr7_3:18345258-18345277 None:intergenic 35.0%
GATGAAATTCCTCATGCTAA+GGG + chr7_3:18345257-18345276 Msa1095480:CDS 35.0%
TGGGAATAGATCATGAGTCA+AGG + chr7_3:18341651-18341670 Msa1095480:CDS 40.0%
CATCACTTTCTTTGAATGGC+CGG - chr7_3:18341685-18341704 None:intergenic 40.0%
TCGGCATCACTTTCTTTGAA+TGG - chr7_3:18341689-18341708 None:intergenic 40.0%
! TGTCTTGATGATCACTCCAT+TGG + chr7_3:18341836-18341855 Msa1095480:CDS 40.0%
!! GCAGATTTGGGTTTTGCTAT+TGG + chr7_3:18341899-18341918 Msa1095480:CDS 40.0%
TAGACAACATGGCTTCACAA+AGG + chr7_3:18342029-18342048 Msa1095480:CDS 40.0%
CAAAGGCTGTTGGAAAAAGT+TGG + chr7_3:18342046-18342065 Msa1095480:CDS 40.0%
!! AAAAGTTGGCTTTCATAGGG+AGG + chr7_3:18342060-18342079 Msa1095480:CDS 40.0%
!! AAAGTTGGCTTTCATAGGGA+GGG + chr7_3:18342061-18342080 Msa1095480:CDS 40.0%
!! TTCAGTTTTCCGTCTTGTTG+CGG + chr7_3:18342492-18342511 Msa1095480:intron 40.0%
AAACAAACACCGCAACAAGA+CGG - chr7_3:18342504-18342523 None:intergenic 40.0%
TTCTTCGATGAATCATGAGG+AGG + chr7_3:18343113-18343132 Msa1095480:intron 40.0%
ATATATGAGACAGATGGCAC+GGG - chr7_3:18343200-18343219 None:intergenic 40.0%
! GATTTCTTTAGGGACTGCTA+TGG - chr7_3:18343307-18343326 None:intergenic 40.0%
TATTCCATCATTGAGGAGTC+GGG + chr7_3:18343396-18343415 Msa1095480:intron 40.0%
GCATACAGAACTCGTACTAA+GGG - chr7_3:18343431-18343450 None:intergenic 40.0%
TGCATACAGAACTCGTACTA+AGG - chr7_3:18343432-18343451 None:intergenic 40.0%
TGCCTCAACCCTTTAACAAT+TGG - chr7_3:18343724-18343743 None:intergenic 40.0%
TCTCAATTCTCGGGATATTG+CGG - chr7_3:18344398-18344417 None:intergenic 40.0%
AATAGTTTCATTAGCACCCG+AGG + chr7_3:18344435-18344454 Msa1095480:intron 40.0%
TGGCAATAGATCAAGAGTCA+AGG + chr7_3:18344754-18344773 Msa1095480:CDS 40.0%
CATCACTTTCTTTGAATGGC+CGG - chr7_3:18341685-18341704 None:intergenic 40.0%
GCTATTGGGTTCAACTATTG+GGG + chr7_3:18345017-18345036 Msa1095480:CDS 40.0%
AAGAATCTTCACTGCTTTGG+TGG - chr7_3:18345054-18345073 None:intergenic 40.0%
CAAAGACTGTTGGAAAAGGT+TGG + chr7_3:18345149-18345168 Msa1095480:CDS 40.0%
!! TGGAAAAGGTTGGTTTCCAA+AGG + chr7_3:18345159-18345178 Msa1095480:CDS 40.0%
!! GGAAAAGGTTGGTTTCCAAA+GGG + chr7_3:18345160-18345179 Msa1095480:CDS 40.0%
CGATGAAATTCCTCATGCTA+AGG + chr7_3:18345256-18345275 Msa1095480:CDS 40.0%
ATGAGTCAAGGATCACTCTC+CGG + chr7_3:18341663-18341682 Msa1095480:CDS 45.0%
!! CTGCTTTTGTGGCTATACCT+TGG - chr7_3:18341940-18341959 None:intergenic 45.0%
! TTCTGACTTGCAAAGGTTGC+AGG + chr7_3:18341994-18342013 Msa1095480:CDS 45.0%
TAGGGAGGGATTGTTCAGAA+AGG + chr7_3:18342075-18342094 Msa1095480:CDS 45.0%
CAATTCAAGGTTCTATGGGG+AGG - chr7_3:18343357-18343376 None:intergenic 45.0%
ATTCCATCATTGAGGAGTCG+GGG + chr7_3:18343397-18343416 Msa1095480:intron 45.0%
! ACCCACCTTGTTTCCTACAT+AGG + chr7_3:18344069-18344088 Msa1095480:intron 45.0%
GCCTATGTAGGAAACAAGGT+GGG - chr7_3:18344073-18344092 None:intergenic 45.0%
! CTATGTTAGTGGGCCTATGT+AGG - chr7_3:18344085-18344104 None:intergenic 45.0%
CTACATAGGCCCACTAACAT+AGG + chr7_3:18344083-18344102 Msa1095480:intron 45.0%
CAATACATGCAACTTGTCCG+AGG + chr7_3:18344123-18344142 Msa1095480:intron 45.0%
AAGAGTCAAGGATCACTCTC+CGG + chr7_3:18344766-18344785 Msa1095480:CDS 45.0%
! ATGCTGACGATGTGTTGTTG+TGG + chr7_3:18344805-18344824 Msa1095480:CDS 45.0%
! TGCTGACGATGTGTTGTTGT+GGG + chr7_3:18344806-18344825 Msa1095480:CDS 45.0%
!! TCCTGATTTGGTAAGGTTGC+AGG + chr7_3:18345097-18345116 Msa1095480:CDS 45.0%
TAATACTCGTCCGGAGAACA+TGG + chr7_3:18345121-18345140 Msa1095480:CDS 45.0%
! CTTTGAGAAGCCATGTTCTC+CGG - chr7_3:18345134-18345153 None:intergenic 45.0%
CATGGCTTCTCAAAGACTGT+TGG + chr7_3:18345139-18345158 Msa1095480:CDS 45.0%
!! AAAGGTTGGTTTCCAAAGGG+AGG + chr7_3:18345163-18345182 Msa1095480:CDS 45.0%
!! AAGGTTGGTTTCCAAAGGGA+GGG + chr7_3:18345164-18345183 Msa1095480:CDS 45.0%
TTCTGAACAATCCCTCCCTT+TGG - chr7_3:18345178-18345197 None:intergenic 45.0%
AAGGGAGGGATTGTTCAGAA+AGG + chr7_3:18345178-18345197 Msa1095480:CDS 45.0%
AGGGAGGGATTGTTCAGAAA+GGG + chr7_3:18342076-18342095 Msa1095480:CDS 45.0%
!!! ATTTTTTTTTTTATAATAGT+TGG - chr7_3:18344045-18344064 None:intergenic 5.0%
! ATGCCGACGATGTGTTGTTG+TGG + chr7_3:18341702-18341721 Msa1095480:CDS 50.0%
! TGCCGACGATGTGTTGTTGT+GGG + chr7_3:18341703-18341722 Msa1095480:CDS 50.0%
TGCCCACAACAACACATCGT+CGG - chr7_3:18341708-18341727 None:intergenic 50.0%
GGGTTCAATTATTGGGGCCA+AGG + chr7_3:18341920-18341939 Msa1095480:CDS 50.0%
CATGGCTTCACAAAGGCTGT+TGG + chr7_3:18342036-18342055 Msa1095480:CDS 50.0%
!! TGAGGAGGACAAGCATCGAA+AGG + chr7_3:18343128-18343147 Msa1095480:intron 50.0%
GGCCTATGTAGGAAACAAGG+TGG - chr7_3:18344074-18344093 None:intergenic 50.0%
GTGGGCCTATGTAGGAAACA+AGG - chr7_3:18344077-18344096 None:intergenic 50.0%
GCCTGCAACCTTACCAAATC+AGG - chr7_3:18345101-18345120 None:intergenic 50.0%
GTTGCAGGCTAATACTCGTC+CGG + chr7_3:18345112-18345131 Msa1095480:CDS 50.0%
AGACAGATGGCACGGGATTG+GGG - chr7_3:18343193-18343212 None:intergenic 55.0%
GAGACAGATGGCACGGGATT+GGG - chr7_3:18343194-18343213 None:intergenic 55.0%
TGAGACAGATGGCACGGGAT+TGG - chr7_3:18343195-18343214 None:intergenic 55.0%
CATCCCCGACTCCTCAATGA+TGG - chr7_3:18343403-18343422 None:intergenic 55.0%
CATCATTGAGGAGTCGGGGA+TGG + chr7_3:18343401-18343420 Msa1095480:intron 55.0%
ATAGGACATGTGCGTCGCAC+AGG - chr7_3:18343565-18343584 None:intergenic 55.0%
GGGTTCAACTATTGGGGCCA+AGG + chr7_3:18345023-18345042 Msa1095480:CDS 55.0%
! CTGCTTTGGTGGCTACACCT+TGG - chr7_3:18345043-18345062 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 18341650 18345283 18341650 ID=Msa1095480;Name=Msa1095480
chr7_3 mRNA 18341650 18345283 18341650 ID=Msa1095480-mRNA-1;Parent=Msa1095480;Name=Msa1095480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0.25|4|0|343
chr7_3 exon 18341650 18341880 18341650 ID=Msa1095480-mRNA-1:exon:3962;Parent=Msa1095480-mRNA-1
chr7_3 exon 18341893 18342096 18341893 ID=Msa1095480-mRNA-1:exon:3963;Parent=Msa1095480-mRNA-1
chr7_3 exon 18342109 18342171 18342109 ID=Msa1095480-mRNA-1:exon:3964;Parent=Msa1095480-mRNA-1
chr7_3 exon 18344750 18345283 18344750 ID=Msa1095480-mRNA-1:exon:3965;Parent=Msa1095480-mRNA-1
chr7_3 CDS 18341650 18341880 18341650 ID=Msa1095480-mRNA-1:cds;Parent=Msa1095480-mRNA-1
chr7_3 CDS 18341893 18342096 18341893 ID=Msa1095480-mRNA-1:cds;Parent=Msa1095480-mRNA-1
chr7_3 CDS 18342109 18342171 18342109 ID=Msa1095480-mRNA-1:cds;Parent=Msa1095480-mRNA-1
chr7_3 CDS 18344750 18345283 18344750 ID=Msa1095480-mRNA-1:cds;Parent=Msa1095480-mRNA-1
Gene Sequence

>Msa1095480

ATGGGAATAGATCATGAGTCAAGGATCACTCTCCGGCCATTCAAAGAAAGTGATGCCGACGATGTGTTGTTGTGGGCAAGTGATGAAAGAGTCATTCAAAATACTCGATTGGAGTTGTGTAAATCAAGGGAAGAAGCTTTGAACTTCATAAAAAAAGATTGCATTTATCCATTCCAACAATCAATATGTCTTGATGATCACTCCATTGGAATTGTTTTTGTACTTCCAATTTTTAAAGCAGATTTGGGTTTTGCTATTGGGTTCAATTATTGGGGCCAAGGTATAGCCACAAAAGCAGTTAAGATTCTCTTGTCTCAAGTGTTCCAAGAGTTTTCTGACTTGCAAAGGTTGCAGGCTAATATTCTTGTAGACAACATGGCTTCACAAAGGCTGTTGGAAAAAGTTGGCTTTCATAGGGAGGGATTGTTCAGAAAGAAAGGGAATATTGAGAATGCATATATTTTCAGTTTCTTGGCTACTGATGAAATTCCTCATGATGTCATGGCAATAGATCAAGAGTCAAGGATCACTCTCCGGCCATTCAAAGAAAGTGATGCTGACGATGTGTTGTTGTGGGCAAGTGATGAAAGAGTCATGCAATATATGCGATTGGAGTTATGTAAATCAAGGGAACAAGCTTTGAATTTCATAAAAAATGAATGCATTTATCCATTCCAACAATCAATATGTCTTGATGATCACTCTATTGGAATTGTTTTTGTCCTTCCTTATCTTGATGCAAAGTTTAAAGCAGATTTAGGTTATGCTATTGGGTTCAACTATTGGGGCCAAGGTGTAGCCACCAAAGCAGTGAAGATTCTTTTGTCTTGTGTATTCCAAGACTTTCCTGATTTGGTAAGGTTGCAGGCTAATACTCGTCCGGAGAACATGGCTTCTCAAAGACTGTTGGAAAAGGTTGGTTTCCAAAGGGAGGGATTGTTCAGAAAGGGAATTTATAACAAAGGGAATGTAGAGGATTTCTGTATTTTTAGTTTCTTGTCTACCGATGAAATTCCTCATGCTAAGGGTTAA

Protein sequence

>Msa1095480

MGIDHESRITLRPFKESDADDVLLWASDERVIQNTRLELCKSREEALNFIKKDCIYPFQQSICLDDHSIGIVFVLPIFKADLGFAIGFNYWGQGIATKAVKILLSQVFQEFSDLQRLQANILVDNMASQRLLEKVGFHREGLFRKKGNIENAYIFSFLATDEIPHDVMAIDQESRITLRPFKESDADDVLLWASDERVMQYMRLELCKSREQALNFIKNECIYPFQQSICLDDHSIGIVFVLPYLDAKFKADLGYAIGFNYWGQGVATKAVKILLSCVFQDFPDLVRLQANTRPENMASQRLLEKVGFQREGLFRKGIYNKGNVEDFCIFSFLSTDEIPHAKG*