AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427830 MtrunA17_Chr7g0275561 96.025 478 15 2 1 476 1 476 0.0 923
Msa1427830 MtrunA17_Chr3g0121121 39.329 328 178 5 99 413 71 390 6.36e-66 220
Msa1427830 MtrunA17_Chr6g0473071 34.444 360 202 6 108 451 67 408 2.51e-53 186
Msa1427830 MtrunA17_Chr3g0136561 32.727 385 225 6 83 451 35 401 5.79e-50 183
Msa1427830 MtrunA17_Chr1g0185761 36.152 343 201 8 79 413 30 362 3.09e-49 173
Msa1427830 MtrunA17_Chr1g0161181 35.756 344 203 8 79 414 30 363 3.20e-49 173
Msa1427830 MtrunA17_Chr6g0462491 31.441 458 271 16 50 473 9 457 1.49e-48 173
Msa1427830 MtrunA17_Chr3g0115901 34.731 334 199 6 90 415 63 385 1.08e-47 169
Msa1427830 MtrunA17_Chr8g0381061 31.183 372 235 6 63 424 16 376 8.63e-45 161
Msa1427830 MtrunA17_Chr8g0358271 28.488 344 223 6 90 423 41 371 4.47e-39 145
Msa1427830 MtrunA17_Chr7g0255281 31.214 346 222 7 78 417 37 372 4.83e-38 144
Msa1427830 MtrunA17_Chr1g0153201 30.747 348 206 8 73 409 7 330 5.14e-38 144
Msa1427830 MtrunA17_Chr3g0088781 30.747 348 206 8 73 409 7 330 6.48e-38 143
Msa1427830 MtrunA17_Chr7g0268361 28.500 400 264 8 82 468 30 420 2.53e-36 139
Msa1427830 MtrunA17_Chr3g0088811 35.270 241 135 5 173 409 7 230 1.16e-34 132
Msa1427830 MtrunA17_Chr2g0311491 33.651 315 165 14 192 474 1 303 1.52e-31 123
Msa1427830 MtrunA17_Chr3g0109091 25.616 406 261 10 73 458 41 425 3.99e-29 119
Msa1427830 MtrunA17_Chr7g0220971 27.042 355 231 9 69 413 39 375 4.78e-27 112
Msa1427830 MtrunA17_Chr6g0467331 26.894 264 180 4 139 398 82 336 1.05e-23 104
Msa1427830 MtrunA17_Chr6g0462481 35.196 179 100 6 185 354 39 210 2.84e-20 89.4
Msa1427830 MtrunA17_Chr8g0389501 29.534 193 120 5 160 343 53 238 3.29e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427830 AT4G01037.1 63.111 450 148 7 24 461 12 455 0.0 549
Msa1427830 AT5G62990.1 39.412 340 178 6 90 413 65 392 4.00e-73 239
Msa1427830 AT3G63090.1 36.919 344 199 9 79 414 33 366 7.74e-51 178
Msa1427830 AT5G48040.1 31.156 398 247 8 78 467 33 411 1.91e-50 178
Msa1427830 AT4G08940.1 34.139 331 198 8 91 415 72 388 1.79e-44 161
Msa1427830 AT5G21970.1 31.649 376 212 7 103 469 74 413 3.06e-44 162
Msa1427830 AT5G21970.2 31.649 376 212 7 103 469 74 413 3.06e-44 162
Msa1427830 AT4G33495.1 30.933 375 238 10 72 432 34 401 2.17e-43 158
Msa1427830 AT1G79120.1 29.552 335 218 5 90 413 68 395 7.53e-41 152
Msa1427830 AT1G79120.2 29.552 335 218 5 90 413 68 395 7.53e-41 152
Msa1427830 AT2G31290.1 30.030 333 209 7 85 413 29 341 2.13e-40 150
Msa1427830 AT2G31290.2 30.030 333 209 7 85 413 29 341 2.13e-40 150
Msa1427830 AT3G58520.1 28.351 388 255 7 49 425 4 379 7.35e-38 144
Msa1427830 AT1G06440.1 29.086 361 235 10 81 427 31 384 5.83e-37 140
Msa1427830 AT5G45790.2 28.642 405 246 12 84 480 68 437 5.52e-36 139
Msa1427830 AT3G58520.2 27.320 388 247 7 49 425 4 367 2.58e-33 130
Msa1427830 AT5G45790.1 28.267 375 227 11 113 480 13 352 1.04e-31 125
Msa1427830 AT4G24320.1 29.167 360 230 9 78 426 19 364 1.17e-29 120
Msa1427830 AT2G39120.1 27.536 345 227 7 78 413 25 355 1.77e-27 114
Msa1427830 AT1G71850.1 25.060 415 276 10 66 468 13 404 2.34e-27 115

Find 87 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCACAGCAGCACTTAT+TGG 0.166484 tig0026223:-33065 None:intergenic
GGGCATTTGGCGAATGATTT+AGG 0.190368 tig0026223:+33455 Msa1427830:CDS
CGATTGAAACAAACGCAAAT+TGG 0.251560 tig0026223:-33000 None:intergenic
GTTATGTCTCTTCAGGAATT+AGG 0.265530 tig0026223:+33185 Msa1427830:CDS
AAAGAGATATAAAACATATC+AGG 0.276380 tig0026223:-33947 None:intergenic
AGGTAAGTATAGAAGAGAAT+TGG 0.310601 tig0026223:+33205 Msa1427830:CDS
TACTCAGATTTCTCTATGAT+TGG 0.332939 tig0026223:+33770 Msa1427830:CDS
GTTAGAGAAAATTGGGCATT+TGG 0.343668 tig0026223:+33442 Msa1427830:CDS
ACAGGGATTCTGTGTTCCTT+AGG 0.353477 tig0026223:+33978 Msa1427830:CDS
TCTGAGTAAGGCGATATATA+AGG 0.364252 tig0026223:-33755 None:intergenic
TAGTAGGGTTATGTCTCTTC+AGG 0.364761 tig0026223:+33178 Msa1427830:CDS
GGTAAGTATAGAAGAGAATT+GGG 0.380116 tig0026223:+33206 Msa1427830:CDS
AGCAGAATTTAATTATAGAT+AGG 0.391261 tig0026223:+33645 Msa1427830:CDS
AGATAGAGATGGAGATGGGA+TGG 0.396749 tig0026223:+34120 Msa1427830:CDS
GAAGTAAGAGATAATTGTTT+AGG 0.403841 tig0026223:-32843 None:intergenic
TACTAGTGAGTAAGCCTAGT+AGG 0.410002 tig0026223:+33162 Msa1427830:CDS
ACCTCCTCGTCATCAAAATC+TGG 0.414715 tig0026223:-34288 None:intergenic
TTCGCGACACCATTTGTCAT+AGG 0.422027 tig0026223:+33492 Msa1427830:CDS
AAAGTTGTTCAGACTGAAAG+AGG 0.431002 tig0026223:+33530 Msa1427830:CDS
TTCTGAATCACATTATCAAA+TGG 0.431524 tig0026223:-33101 None:intergenic
GTGTTTGAGATTGTGGAAGA+TGG 0.438846 tig0026223:+33278 Msa1427830:CDS
TGCACTTGAATTAACACATT+GGG 0.442420 tig0026223:+33556 Msa1427830:CDS
AGCTTTATCTTGAAGAATTG+AGG 0.442851 tig0026223:+33342 Msa1427830:CDS
GGACAGATTGTTACTTGTAA+AGG 0.447014 tig0026223:+34033 Msa1427830:CDS
TTTGAAAGATTAAGACCCTT+AGG 0.447819 tig0026223:-33695 None:intergenic
ATATCTCTTTGAAAGGAGAC+AGG 0.456034 tig0026223:+33960 Msa1427830:CDS
CAGGGATTCTGTGTTCCTTA+GGG 0.456981 tig0026223:+33979 Msa1427830:CDS
TCCTGGTGTGTTTGAGATTG+TGG 0.459381 tig0026223:+33271 Msa1427830:CDS
TGATATTCCACGATTTCCTA+AGG 0.460152 tig0026223:+34075 Msa1427830:CDS
ATCTTGAAGAATTGAGGGTT+AGG 0.461053 tig0026223:+33348 Msa1427830:CDS
CTCTGGATACCTATGACAAA+TGG 0.461089 tig0026223:-33501 None:intergenic
AAGGGTCTTAATCTTTCAAA+AGG 0.467749 tig0026223:+33698 Msa1427830:CDS
GCTTTATCTTGAAGAATTGA+GGG 0.468992 tig0026223:+33343 Msa1427830:CDS
TCCACGATTTCCTAAGGGTA+GGG 0.472983 tig0026223:+34081 Msa1427830:CDS
GATAGAGATGGAGATGGGAT+GGG 0.477156 tig0026223:+34121 Msa1427830:CDS
AGCTTTACTCTATTAAACTT+AGG 0.478690 tig0026223:-33671 None:intergenic
TTTCCTAAGGGTAGGGGTGC+CGG 0.484180 tig0026223:+34088 Msa1427830:CDS
GCAGAATTTAATTATAGATA+GGG 0.485320 tig0026223:+33646 Msa1427830:CDS
TAATAGAGTAAAGCTTCCTA+AGG 0.486104 tig0026223:+33679 Msa1427830:CDS
ATTGAGGGTTAGGAATGAAA+TGG 0.486805 tig0026223:+33358 Msa1427830:CDS
GTATAGAAGAGAATTGGGTT+TGG 0.491370 tig0026223:+33211 Msa1427830:CDS
AATTGAGAGGGATGTTGATA+AGG 0.491946 tig0026223:+33921 Msa1427830:CDS
TGTTTGAGATTGTGGAAGAT+GGG 0.492902 tig0026223:+33279 Msa1427830:CDS
ATCATAGAGAAATCTGAGTA+AGG 0.496079 tig0026223:-33767 None:intergenic
CAATCGAATTCATCACATGT+TGG 0.496950 tig0026223:+33017 Msa1427830:CDS
TGAAGAGACATAACCCTACT+AGG 0.498867 tig0026223:-33176 None:intergenic
ATCTCTATCTCTAGTGCGAC+CGG 0.501008 tig0026223:-34107 None:intergenic
ATGTTGTTGTTACTAAGCTT+AGG 0.506899 tig0026223:+33384 Msa1427830:CDS
GGAGAATCAAATTAGAGAAG+TGG 0.527418 tig0026223:+33619 Msa1427830:CDS
CGATTCTCACAGCAATTGAG+AGG 0.531952 tig0026223:+33908 Msa1427830:CDS
CAATGTGTTAATTCAAGTGC+AGG 0.536567 tig0026223:-33554 None:intergenic
GAAATTGTTGATGATGCCGT+TGG 0.539200 tig0026223:+33406 Msa1427830:CDS
TGAAATTTGTTCTCAAAGTG+AGG 0.546830 tig0026223:+33135 Msa1427830:CDS
AAGAGATATAAAACATATCA+GGG 0.552458 tig0026223:-33946 None:intergenic
GAAATTTAGAATGACTTCTG+AGG 0.553098 tig0026223:+33313 Msa1427830:CDS
TGCGGCCGAGCTGTCTGCGG+AGG 0.560311 tig0026223:+33598 Msa1427830:CDS
CCACGATTTCCTAAGGGTAG+GGG 0.563389 tig0026223:+34082 Msa1427830:CDS
AGCTTATCGAGATTCTCAGT+TGG 0.565019 tig0026223:+34003 Msa1427830:CDS
ACTAGAGATAGAGATGGAGA+TGG 0.565748 tig0026223:+34115 Msa1427830:CDS
TTCTGCGGCCGAGCTGTCTG+CGG 0.565854 tig0026223:+33595 Msa1427830:CDS
ACGATGATATCGATGATGAC+TGG 0.572213 tig0026223:+34239 Msa1427830:CDS
GAATGATATTGATAGCAGAC+AGG 0.573642 tig0026223:+34147 Msa1427830:CDS
ACTAGTGAGTAAGCCTAGTA+GGG 0.573985 tig0026223:+33163 Msa1427830:CDS
CTGCACTTGAATTAACACAT+TGG 0.577423 tig0026223:+33555 Msa1427830:CDS
ACAGGATGAAAGTGGTGAAG+AGG 0.582031 tig0026223:+34165 Msa1427830:CDS
ATCTTTCAAAAGGTGAGATG+AGG 0.582454 tig0026223:+33708 Msa1427830:CDS
TCCTCAGCTTGCAGTTTCTG+CGG 0.583709 tig0026223:+33580 Msa1427830:CDS
GGTCGCACTAGAGATAGAGA+TGG 0.588250 tig0026223:+34109 Msa1427830:CDS
CTAGAGATAGAGATGGAGAT+GGG 0.591787 tig0026223:+34116 Msa1427830:CDS
GATAGCAGACAGGATGAAAG+TGG 0.596310 tig0026223:+34157 Msa1427830:CDS
CCCCTACCCTTAGGAAATCG+TGG 0.600344 tig0026223:-34082 None:intergenic
GCCGCAGAAACTGCAAGCTG+AGG 0.600466 tig0026223:-33581 None:intergenic
ATTCTCCTCCGCAGACAGCT+CGG 0.606736 tig0026223:-33603 None:intergenic
GATTCTCACAGCAATTGAGA+GGG 0.608241 tig0026223:+33909 Msa1427830:CDS
TATCTCTTTGAAAGGAGACA+GGG 0.611518 tig0026223:+33961 Msa1427830:CDS
AATAGAGTAAAGCTTCCTAA+GGG 0.615219 tig0026223:+33680 Msa1427830:CDS
AATCTCGATAAGCTTCCCTA+AGG 0.627558 tig0026223:-33994 None:intergenic
GATATTCCACGATTTCCTAA+GGG 0.627966 tig0026223:+34076 Msa1427830:CDS
TCCTCGTCATCAAAATCTGG+TGG 0.632166 tig0026223:-34285 None:intergenic
GTGGTGAAGAGGAACAAGAA+TGG 0.632592 tig0026223:+34176 Msa1427830:CDS
AGATTCTCAGTTGGTAGACA+AGG 0.639646 tig0026223:+34012 Msa1427830:CDS
TGATGATGCCGTTGGAAAAG+CGG 0.641358 tig0026223:+33414 Msa1427830:CDS
TCCACAATCTCAAACACACC+AGG 0.645713 tig0026223:-33272 None:intergenic
TATGATTGGTTTGAACACGC+CGG 0.658259 tig0026223:+33784 Msa1427830:CDS
GCTGATGATTTAATCAGCGA+TGG 0.662081 tig0026223:+34205 Msa1427830:CDS
TTCCACGATTTCCTAAGGGT+AGG 0.664321 tig0026223:+34080 Msa1427830:CDS
ATGGTGTCGCGAAATTCTCG+AGG 0.669888 tig0026223:-33482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGTATAATTTTATTAAATCT+GGG - tig0026223:33047-33066 None:intergenic 15.0%
!!! TGGTATAATTTTATTAAATC+TGG - tig0026223:33048-33067 None:intergenic 15.0%
!!! GAAAATTAATTGTAATTTTG+AGG + tig0026223:33243-33262 Msa1427830:CDS 15.0%
!!! GGTATAATTTTATTAAATCT+GGG - tig0026223:33047-33066 None:intergenic 15.0%
!!! TGGTATAATTTTATTAAATC+TGG - tig0026223:33048-33067 None:intergenic 15.0%
!!! GAAAATTAATTGTAATTTTG+AGG + tig0026223:33243-33262 Msa1427830:CDS 15.0%
!! GAAGATAAAAAAGATAGTTT+GGG - tig0026223:32870-32889 None:intergenic 20.0%
!! TGAAGATAAAAAAGATAGTT+TGG - tig0026223:32871-32890 None:intergenic 20.0%
!!! AGTTTATTTGAGATGAAAAA+TGG - tig0026223:32909-32928 None:intergenic 20.0%
!!! AAAAAATTGGGATTTTTGAA+GGG - tig0026223:32976-32995 None:intergenic 20.0%
!! AGCAGAATTTAATTATAGAT+AGG + tig0026223:33645-33664 Msa1427830:CDS 20.0%
!! GCAGAATTTAATTATAGATA+GGG + tig0026223:33646-33665 Msa1427830:CDS 20.0%
!! AAGAGATATAAAACATATCA+GGG - tig0026223:33949-33968 None:intergenic 20.0%
!! AAAGAGATATAAAACATATC+AGG - tig0026223:33950-33969 None:intergenic 20.0%
!!! ATGTTTTATATCTCTTTGAA+AGG + tig0026223:33953-33972 Msa1427830:CDS 20.0%
!! GAAGATAAAAAAGATAGTTT+GGG - tig0026223:32870-32889 None:intergenic 20.0%
!! TGAAGATAAAAAAGATAGTT+TGG - tig0026223:32871-32890 None:intergenic 20.0%
!!! AGTTTATTTGAGATGAAAAA+TGG - tig0026223:32909-32928 None:intergenic 20.0%
!!! AAAAAATTGGGATTTTTGAA+GGG - tig0026223:32976-32995 None:intergenic 20.0%
!! AGCAGAATTTAATTATAGAT+AGG + tig0026223:33645-33664 Msa1427830:CDS 20.0%
!! GCAGAATTTAATTATAGATA+GGG + tig0026223:33646-33665 Msa1427830:CDS 20.0%
!! AAGAGATATAAAACATATCA+GGG - tig0026223:33949-33968 None:intergenic 20.0%
!! AAAGAGATATAAAACATATC+AGG - tig0026223:33950-33969 None:intergenic 20.0%
!!! ATGTTTTATATCTCTTTGAA+AGG + tig0026223:33953-33972 Msa1427830:CDS 20.0%
! GAAGTAAGAGATAATTGTTT+AGG - tig0026223:32846-32865 None:intergenic 25.0%
! TTGAGATGAAAAATGGTAAA+GGG - tig0026223:32902-32921 None:intergenic 25.0%
!! TTTGAGATGAAAAATGGTAA+AGG - tig0026223:32903-32922 None:intergenic 25.0%
! TGAAGTTTGAGAGAAAAATT+TGG - tig0026223:32948-32967 None:intergenic 25.0%
!! CAAAAAATTGGGATTTTTGA+AGG - tig0026223:32977-32996 None:intergenic 25.0%
!!! CTTCAAAAATCCCAATTTTT+TGG + tig0026223:32975-32994 Msa1427830:CDS 25.0%
!! CAAATTGGTTCCAAAAAATT+GGG - tig0026223:32988-33007 None:intergenic 25.0%
! TTCTGAATCACATTATCAAA+TGG - tig0026223:33104-33123 None:intergenic 25.0%
!! GGATTTTGTTAGAGAAAATT+GGG + tig0026223:33435-33454 Msa1427830:CDS 25.0%
!! TGAACAACTTTAAAAAACTC+TGG - tig0026223:33521-33540 None:intergenic 25.0%
! AGCTTTACTCTATTAAACTT+AGG - tig0026223:33674-33693 None:intergenic 25.0%
! GAAGTAAGAGATAATTGTTT+AGG - tig0026223:32846-32865 None:intergenic 25.0%
! TTGAGATGAAAAATGGTAAA+GGG - tig0026223:32902-32921 None:intergenic 25.0%
!! TTTGAGATGAAAAATGGTAA+AGG - tig0026223:32903-32922 None:intergenic 25.0%
! TGAAGTTTGAGAGAAAAATT+TGG - tig0026223:32948-32967 None:intergenic 25.0%
!! CAAAAAATTGGGATTTTTGA+AGG - tig0026223:32977-32996 None:intergenic 25.0%
!!! CTTCAAAAATCCCAATTTTT+TGG + tig0026223:32975-32994 Msa1427830:CDS 25.0%
!! CAAATTGGTTCCAAAAAATT+GGG - tig0026223:32988-33007 None:intergenic 25.0%
! TTCTGAATCACATTATCAAA+TGG - tig0026223:33104-33123 None:intergenic 25.0%
!! GGATTTTGTTAGAGAAAATT+GGG + tig0026223:33435-33454 Msa1427830:CDS 25.0%
!! TGAACAACTTTAAAAAACTC+TGG - tig0026223:33521-33540 None:intergenic 25.0%
! AGCTTTACTCTATTAAACTT+AGG - tig0026223:33674-33693 None:intergenic 25.0%
TGAGATGAAAAATGGTAAAG+GGG - tig0026223:32901-32920 None:intergenic 30.0%
! GCAAATTGGTTCCAAAAAAT+TGG - tig0026223:32989-33008 None:intergenic 30.0%
! TGAAATTTGTTCTCAAAGTG+AGG + tig0026223:33135-33154 Msa1427830:CDS 30.0%
AGGTAAGTATAGAAGAGAAT+TGG + tig0026223:33205-33224 Msa1427830:CDS 30.0%
GGTAAGTATAGAAGAGAATT+GGG + tig0026223:33206-33225 Msa1427830:CDS 30.0%
! GAAATTTAGAATGACTTCTG+AGG + tig0026223:33313-33332 Msa1427830:CDS 30.0%
! AGCTTTATCTTGAAGAATTG+AGG + tig0026223:33342-33361 Msa1427830:CDS 30.0%
GCTTTATCTTGAAGAATTGA+GGG + tig0026223:33343-33362 Msa1427830:CDS 30.0%
! ATGTTGTTGTTACTAAGCTT+AGG + tig0026223:33384-33403 Msa1427830:CDS 30.0%
! CGGATTTTGTTAGAGAAAAT+TGG + tig0026223:33434-33453 Msa1427830:CDS 30.0%
TGCACTTGAATTAACACATT+GGG + tig0026223:33556-33575 Msa1427830:CDS 30.0%
TAATAGAGTAAAGCTTCCTA+AGG + tig0026223:33679-33698 Msa1427830:CDS 30.0%
AATAGAGTAAAGCTTCCTAA+GGG + tig0026223:33680-33699 Msa1427830:CDS 30.0%
TTTGAAAGATTAAGACCCTT+AGG - tig0026223:33698-33717 None:intergenic 30.0%
AAGGGTCTTAATCTTTCAAA+AGG + tig0026223:33698-33717 Msa1427830:CDS 30.0%
ATCATAGAGAAATCTGAGTA+AGG - tig0026223:33770-33789 None:intergenic 30.0%
TACTCAGATTTCTCTATGAT+TGG + tig0026223:33770-33789 Msa1427830:CDS 30.0%
TGAGATGAAAAATGGTAAAG+GGG - tig0026223:32901-32920 None:intergenic 30.0%
! GCAAATTGGTTCCAAAAAAT+TGG - tig0026223:32989-33008 None:intergenic 30.0%
! TGAAATTTGTTCTCAAAGTG+AGG + tig0026223:33135-33154 Msa1427830:CDS 30.0%
AGGTAAGTATAGAAGAGAAT+TGG + tig0026223:33205-33224 Msa1427830:CDS 30.0%
GGTAAGTATAGAAGAGAATT+GGG + tig0026223:33206-33225 Msa1427830:CDS 30.0%
! GAAATTTAGAATGACTTCTG+AGG + tig0026223:33313-33332 Msa1427830:CDS 30.0%
! AGCTTTATCTTGAAGAATTG+AGG + tig0026223:33342-33361 Msa1427830:CDS 30.0%
GCTTTATCTTGAAGAATTGA+GGG + tig0026223:33343-33362 Msa1427830:CDS 30.0%
! ATGTTGTTGTTACTAAGCTT+AGG + tig0026223:33384-33403 Msa1427830:CDS 30.0%
! CGGATTTTGTTAGAGAAAAT+TGG + tig0026223:33434-33453 Msa1427830:CDS 30.0%
TGCACTTGAATTAACACATT+GGG + tig0026223:33556-33575 Msa1427830:CDS 30.0%
TAATAGAGTAAAGCTTCCTA+AGG + tig0026223:33679-33698 Msa1427830:CDS 30.0%
AATAGAGTAAAGCTTCCTAA+GGG + tig0026223:33680-33699 Msa1427830:CDS 30.0%
TTTGAAAGATTAAGACCCTT+AGG - tig0026223:33698-33717 None:intergenic 30.0%
AAGGGTCTTAATCTTTCAAA+AGG + tig0026223:33698-33717 Msa1427830:CDS 30.0%
ATCATAGAGAAATCTGAGTA+AGG - tig0026223:33770-33789 None:intergenic 30.0%
TACTCAGATTTCTCTATGAT+TGG + tig0026223:33770-33789 Msa1427830:CDS 30.0%
CGATTGAAACAAACGCAAAT+TGG - tig0026223:33003-33022 None:intergenic 35.0%
CAATCGAATTCATCACATGT+TGG + tig0026223:33017-33036 Msa1427830:CDS 35.0%
GTTATGTCTCTTCAGGAATT+AGG + tig0026223:33185-33204 Msa1427830:CDS 35.0%
GTATAGAAGAGAATTGGGTT+TGG + tig0026223:33211-33230 Msa1427830:CDS 35.0%
!! GTAATTTTGAGGAGATTTCC+TGG + tig0026223:33254-33273 Msa1427830:CDS 35.0%
! TGTTTGAGATTGTGGAAGAT+GGG + tig0026223:33279-33298 Msa1427830:CDS 35.0%
ATCTTGAAGAATTGAGGGTT+AGG + tig0026223:33348-33367 Msa1427830:CDS 35.0%
ATTGAGGGTTAGGAATGAAA+TGG + tig0026223:33358-33377 Msa1427830:CDS 35.0%
!! AACAAAATCCGCTTTTCCAA+CGG - tig0026223:33425-33444 None:intergenic 35.0%
GTTAGAGAAAATTGGGCATT+TGG + tig0026223:33442-33461 Msa1427830:CDS 35.0%
AAAGTTGTTCAGACTGAAAG+AGG + tig0026223:33530-33549 Msa1427830:CDS 35.0%
CAATGTGTTAATTCAAGTGC+AGG - tig0026223:33557-33576 None:intergenic 35.0%
CTGCACTTGAATTAACACAT+TGG + tig0026223:33555-33574 Msa1427830:CDS 35.0%
GGAGAATCAAATTAGAGAAG+TGG + tig0026223:33619-33638 Msa1427830:CDS 35.0%
ATCTTTCAAAAGGTGAGATG+AGG + tig0026223:33708-33727 Msa1427830:CDS 35.0%
TCTGAGTAAGGCGATATATA+AGG - tig0026223:33758-33777 None:intergenic 35.0%
!! TAACTTCACTCATTTTCGAG+AGG + tig0026223:33880-33899 Msa1427830:CDS 35.0%
AATTGAGAGGGATGTTGATA+AGG + tig0026223:33921-33940 Msa1427830:CDS 35.0%
! ATATCTCTTTGAAAGGAGAC+AGG + tig0026223:33960-33979 Msa1427830:CDS 35.0%
! TATCTCTTTGAAAGGAGACA+GGG + tig0026223:33961-33980 Msa1427830:CDS 35.0%
! GGACAGATTGTTACTTGTAA+AGG + tig0026223:34033-34052 Msa1427830:CDS 35.0%
AAAGGAAAAACTTCGTTCGT+TGG + tig0026223:34051-34070 Msa1427830:CDS 35.0%
TGATATTCCACGATTTCCTA+AGG + tig0026223:34075-34094 Msa1427830:CDS 35.0%
GATATTCCACGATTTCCTAA+GGG + tig0026223:34076-34095 Msa1427830:CDS 35.0%
! GAATGATATTGATAGCAGAC+AGG + tig0026223:34147-34166 Msa1427830:CDS 35.0%
CGATTGAAACAAACGCAAAT+TGG - tig0026223:33003-33022 None:intergenic 35.0%
CAATCGAATTCATCACATGT+TGG + tig0026223:33017-33036 Msa1427830:CDS 35.0%
GTTATGTCTCTTCAGGAATT+AGG + tig0026223:33185-33204 Msa1427830:CDS 35.0%
GTATAGAAGAGAATTGGGTT+TGG + tig0026223:33211-33230 Msa1427830:CDS 35.0%
!! GTAATTTTGAGGAGATTTCC+TGG + tig0026223:33254-33273 Msa1427830:CDS 35.0%
! TGTTTGAGATTGTGGAAGAT+GGG + tig0026223:33279-33298 Msa1427830:CDS 35.0%
ATCTTGAAGAATTGAGGGTT+AGG + tig0026223:33348-33367 Msa1427830:CDS 35.0%
ATTGAGGGTTAGGAATGAAA+TGG + tig0026223:33358-33377 Msa1427830:CDS 35.0%
!! AACAAAATCCGCTTTTCCAA+CGG - tig0026223:33425-33444 None:intergenic 35.0%
GTTAGAGAAAATTGGGCATT+TGG + tig0026223:33442-33461 Msa1427830:CDS 35.0%
AAAGTTGTTCAGACTGAAAG+AGG + tig0026223:33530-33549 Msa1427830:CDS 35.0%
CAATGTGTTAATTCAAGTGC+AGG - tig0026223:33557-33576 None:intergenic 35.0%
CTGCACTTGAATTAACACAT+TGG + tig0026223:33555-33574 Msa1427830:CDS 35.0%
GGAGAATCAAATTAGAGAAG+TGG + tig0026223:33619-33638 Msa1427830:CDS 35.0%
ATCTTTCAAAAGGTGAGATG+AGG + tig0026223:33708-33727 Msa1427830:CDS 35.0%
TCTGAGTAAGGCGATATATA+AGG - tig0026223:33758-33777 None:intergenic 35.0%
!! TAACTTCACTCATTTTCGAG+AGG + tig0026223:33880-33899 Msa1427830:CDS 35.0%
AATTGAGAGGGATGTTGATA+AGG + tig0026223:33921-33940 Msa1427830:CDS 35.0%
! ATATCTCTTTGAAAGGAGAC+AGG + tig0026223:33960-33979 Msa1427830:CDS 35.0%
! TATCTCTTTGAAAGGAGACA+GGG + tig0026223:33961-33980 Msa1427830:CDS 35.0%
! GGACAGATTGTTACTTGTAA+AGG + tig0026223:34033-34052 Msa1427830:CDS 35.0%
AAAGGAAAAACTTCGTTCGT+TGG + tig0026223:34051-34070 Msa1427830:CDS 35.0%
TGATATTCCACGATTTCCTA+AGG + tig0026223:34075-34094 Msa1427830:CDS 35.0%
GATATTCCACGATTTCCTAA+GGG + tig0026223:34076-34095 Msa1427830:CDS 35.0%
! GAATGATATTGATAGCAGAC+AGG + tig0026223:34147-34166 Msa1427830:CDS 35.0%
TACTAGTGAGTAAGCCTAGT+AGG + tig0026223:33162-33181 Msa1427830:CDS 40.0%
ACTAGTGAGTAAGCCTAGTA+GGG + tig0026223:33163-33182 Msa1427830:CDS 40.0%
TGAAGAGACATAACCCTACT+AGG - tig0026223:33179-33198 None:intergenic 40.0%
TAGTAGGGTTATGTCTCTTC+AGG + tig0026223:33178-33197 Msa1427830:CDS 40.0%
! GTGTTTGAGATTGTGGAAGA+TGG + tig0026223:33278-33297 Msa1427830:CDS 40.0%
!! GAAATTGTTGATGATGCCGT+TGG + tig0026223:33406-33425 Msa1427830:CDS 40.0%
CTCTGGATACCTATGACAAA+TGG - tig0026223:33504-33523 None:intergenic 40.0%
!! TATGATTGGTTTGAACACGC+CGG + tig0026223:33784-33803 Msa1427830:CDS 40.0%
! CAAGCATGCTTCTCTTTTTC+CGG - tig0026223:33806-33825 None:intergenic 40.0%
! GAAAAAGAGAAGCATGCTTG+TGG + tig0026223:33806-33825 Msa1427830:CDS 40.0%
GATTCTCACAGCAATTGAGA+GGG + tig0026223:33909-33928 Msa1427830:CDS 40.0%
AATCTCGATAAGCTTCCCTA+AGG - tig0026223:33997-34016 None:intergenic 40.0%
AGCTTATCGAGATTCTCAGT+TGG + tig0026223:34003-34022 Msa1427830:CDS 40.0%
!! AGATTCTCAGTTGGTAGACA+AGG + tig0026223:34012-34031 Msa1427830:CDS 40.0%
ACTAGAGATAGAGATGGAGA+TGG + tig0026223:34115-34134 Msa1427830:CDS 40.0%
CTAGAGATAGAGATGGAGAT+GGG + tig0026223:34116-34135 Msa1427830:CDS 40.0%
GCTGATGATTTAATCAGCGA+TGG + tig0026223:34205-34224 Msa1427830:CDS 40.0%
ACGATGATATCGATGATGAC+TGG + tig0026223:34239-34258 Msa1427830:CDS 40.0%
TACTAGTGAGTAAGCCTAGT+AGG + tig0026223:33162-33181 Msa1427830:CDS 40.0%
ACTAGTGAGTAAGCCTAGTA+GGG + tig0026223:33163-33182 Msa1427830:CDS 40.0%
TGAAGAGACATAACCCTACT+AGG - tig0026223:33179-33198 None:intergenic 40.0%
TAGTAGGGTTATGTCTCTTC+AGG + tig0026223:33178-33197 Msa1427830:CDS 40.0%
! GTGTTTGAGATTGTGGAAGA+TGG + tig0026223:33278-33297 Msa1427830:CDS 40.0%
!! GAAATTGTTGATGATGCCGT+TGG + tig0026223:33406-33425 Msa1427830:CDS 40.0%
CTCTGGATACCTATGACAAA+TGG - tig0026223:33504-33523 None:intergenic 40.0%
!! TATGATTGGTTTGAACACGC+CGG + tig0026223:33784-33803 Msa1427830:CDS 40.0%
! CAAGCATGCTTCTCTTTTTC+CGG - tig0026223:33806-33825 None:intergenic 40.0%
! GAAAAAGAGAAGCATGCTTG+TGG + tig0026223:33806-33825 Msa1427830:CDS 40.0%
GATTCTCACAGCAATTGAGA+GGG + tig0026223:33909-33928 Msa1427830:CDS 40.0%
AATCTCGATAAGCTTCCCTA+AGG - tig0026223:33997-34016 None:intergenic 40.0%
AGCTTATCGAGATTCTCAGT+TGG + tig0026223:34003-34022 Msa1427830:CDS 40.0%
!! AGATTCTCAGTTGGTAGACA+AGG + tig0026223:34012-34031 Msa1427830:CDS 40.0%
ACTAGAGATAGAGATGGAGA+TGG + tig0026223:34115-34134 Msa1427830:CDS 40.0%
CTAGAGATAGAGATGGAGAT+GGG + tig0026223:34116-34135 Msa1427830:CDS 40.0%
GCTGATGATTTAATCAGCGA+TGG + tig0026223:34205-34224 Msa1427830:CDS 40.0%
ACGATGATATCGATGATGAC+TGG + tig0026223:34239-34258 Msa1427830:CDS 40.0%
CTCTTCACAGCAGCACTTAT+TGG - tig0026223:33068-33087 None:intergenic 45.0%
! TCCTGGTGTGTTTGAGATTG+TGG + tig0026223:33271-33290 Msa1427830:CDS 45.0%
TCCACAATCTCAAACACACC+AGG - tig0026223:33275-33294 None:intergenic 45.0%
! TGATGATGCCGTTGGAAAAG+CGG + tig0026223:33414-33433 Msa1427830:CDS 45.0%
GGGCATTTGGCGAATGATTT+AGG + tig0026223:33455-33474 Msa1427830:CDS 45.0%
TTCGCGACACCATTTGTCAT+AGG + tig0026223:33492-33511 Msa1427830:CDS 45.0%
CGATTCTCACAGCAATTGAG+AGG + tig0026223:33908-33927 Msa1427830:CDS 45.0%
ACAGGGATTCTGTGTTCCTT+AGG + tig0026223:33978-33997 Msa1427830:CDS 45.0%
CAGGGATTCTGTGTTCCTTA+GGG + tig0026223:33979-33998 Msa1427830:CDS 45.0%
TTCCACGATTTCCTAAGGGT+AGG + tig0026223:34080-34099 Msa1427830:CDS 45.0%
TCCACGATTTCCTAAGGGTA+GGG + tig0026223:34081-34100 Msa1427830:CDS 45.0%
ATCTCTATCTCTAGTGCGAC+CGG - tig0026223:34110-34129 None:intergenic 45.0%
AGATAGAGATGGAGATGGGA+TGG + tig0026223:34120-34139 Msa1427830:CDS 45.0%
GATAGAGATGGAGATGGGAT+GGG + tig0026223:34121-34140 Msa1427830:CDS 45.0%
GATAGCAGACAGGATGAAAG+TGG + tig0026223:34157-34176 Msa1427830:CDS 45.0%
ACAGGATGAAAGTGGTGAAG+AGG + tig0026223:34165-34184 Msa1427830:CDS 45.0%
GTGGTGAAGAGGAACAAGAA+TGG + tig0026223:34176-34195 Msa1427830:CDS 45.0%
!!! ACCACCAGATTTTGATGACG+AGG + tig0026223:34284-34303 Msa1427830:CDS 45.0%
TCCTCGTCATCAAAATCTGG+TGG - tig0026223:34288-34307 None:intergenic 45.0%
!!! ACCAGATTTTGATGACGAGG+AGG + tig0026223:34287-34306 Msa1427830:CDS 45.0%
ACCTCCTCGTCATCAAAATC+TGG - tig0026223:34291-34310 None:intergenic 45.0%
CTCTTCACAGCAGCACTTAT+TGG - tig0026223:33068-33087 None:intergenic 45.0%
! TCCTGGTGTGTTTGAGATTG+TGG + tig0026223:33271-33290 Msa1427830:CDS 45.0%
TCCACAATCTCAAACACACC+AGG - tig0026223:33275-33294 None:intergenic 45.0%
! TGATGATGCCGTTGGAAAAG+CGG + tig0026223:33414-33433 Msa1427830:CDS 45.0%
GGGCATTTGGCGAATGATTT+AGG + tig0026223:33455-33474 Msa1427830:CDS 45.0%
TTCGCGACACCATTTGTCAT+AGG + tig0026223:33492-33511 Msa1427830:CDS 45.0%
CGATTCTCACAGCAATTGAG+AGG + tig0026223:33908-33927 Msa1427830:CDS 45.0%
ACAGGGATTCTGTGTTCCTT+AGG + tig0026223:33978-33997 Msa1427830:CDS 45.0%
CAGGGATTCTGTGTTCCTTA+GGG + tig0026223:33979-33998 Msa1427830:CDS 45.0%
TTCCACGATTTCCTAAGGGT+AGG + tig0026223:34080-34099 Msa1427830:CDS 45.0%
TCCACGATTTCCTAAGGGTA+GGG + tig0026223:34081-34100 Msa1427830:CDS 45.0%
ATCTCTATCTCTAGTGCGAC+CGG - tig0026223:34110-34129 None:intergenic 45.0%
AGATAGAGATGGAGATGGGA+TGG + tig0026223:34120-34139 Msa1427830:CDS 45.0%
GATAGAGATGGAGATGGGAT+GGG + tig0026223:34121-34140 Msa1427830:CDS 45.0%
GATAGCAGACAGGATGAAAG+TGG + tig0026223:34157-34176 Msa1427830:CDS 45.0%
ACAGGATGAAAGTGGTGAAG+AGG + tig0026223:34165-34184 Msa1427830:CDS 45.0%
GTGGTGAAGAGGAACAAGAA+TGG + tig0026223:34176-34195 Msa1427830:CDS 45.0%
!!! ACCACCAGATTTTGATGACG+AGG + tig0026223:34284-34303 Msa1427830:CDS 45.0%
TCCTCGTCATCAAAATCTGG+TGG - tig0026223:34288-34307 None:intergenic 45.0%
!!! ACCAGATTTTGATGACGAGG+AGG + tig0026223:34287-34306 Msa1427830:CDS 45.0%
ACCTCCTCGTCATCAAAATC+TGG - tig0026223:34291-34310 None:intergenic 45.0%
!! ATGGTGTCGCGAAATTCTCG+AGG - tig0026223:33485-33504 None:intergenic 50.0%
TCCTCAGCTTGCAGTTTCTG+CGG + tig0026223:33580-33599 Msa1427830:CDS 50.0%
CCACGATTTCCTAAGGGTAG+GGG + tig0026223:34082-34101 Msa1427830:CDS 50.0%
GGTCGCACTAGAGATAGAGA+TGG + tig0026223:34109-34128 Msa1427830:CDS 50.0%
!! ATGGTGTCGCGAAATTCTCG+AGG - tig0026223:33485-33504 None:intergenic 50.0%
TCCTCAGCTTGCAGTTTCTG+CGG + tig0026223:33580-33599 Msa1427830:CDS 50.0%
CCACGATTTCCTAAGGGTAG+GGG + tig0026223:34082-34101 Msa1427830:CDS 50.0%
GGTCGCACTAGAGATAGAGA+TGG + tig0026223:34109-34128 Msa1427830:CDS 50.0%
ATTCTCCTCCGCAGACAGCT+CGG - tig0026223:33606-33625 None:intergenic 55.0%
CCCCTACCCTTAGGAAATCG+TGG - tig0026223:34085-34104 None:intergenic 55.0%
! TTTCCTAAGGGTAGGGGTGC+CGG + tig0026223:34088-34107 Msa1427830:CDS 55.0%
ATTCTCCTCCGCAGACAGCT+CGG - tig0026223:33606-33625 None:intergenic 55.0%
CCCCTACCCTTAGGAAATCG+TGG - tig0026223:34085-34104 None:intergenic 55.0%
! TTTCCTAAGGGTAGGGGTGC+CGG + tig0026223:34088-34107 Msa1427830:CDS 55.0%
GCCGCAGAAACTGCAAGCTG+AGG - tig0026223:33584-33603 None:intergenic 60.0%
GCCGCAGAAACTGCAAGCTG+AGG - tig0026223:33584-33603 None:intergenic 60.0%
TTCTGCGGCCGAGCTGTCTG+CGG + tig0026223:33595-33614 Msa1427830:CDS 65.0%
TTCTGCGGCCGAGCTGTCTG+CGG + tig0026223:33595-33614 Msa1427830:CDS 65.0%
CGACCGGCACCCCTACCCTT+AGG - tig0026223:34094-34113 None:intergenic 70.0%
CGACCGGCACCCCTACCCTT+AGG - tig0026223:34094-34113 None:intergenic 70.0%
TGCGGCCGAGCTGTCTGCGG+AGG + tig0026223:33598-33617 Msa1427830:CDS 75.0%
TGCGGCCGAGCTGTCTGCGG+AGG + tig0026223:33598-33617 Msa1427830:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0026223 gene 32837 34312 32837 ID=Msa1427830;Name=Msa1427830
tig0026223 mRNA 32837 34312 32837 ID=Msa1427830-mRNA-1;Parent=Msa1427830;Name=Msa1427830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|491
tig0026223 exon 32837 34312 32837 ID=Msa1427830-mRNA-1:exon:5600;Parent=Msa1427830-mRNA-1
tig0026223 CDS 32837 34312 32837 ID=Msa1427830-mRNA-1:cds;Parent=Msa1427830-mRNA-1
Gene Sequence

>Msa1427830

ATGGATCCTAAACAATTATCTCTTACTTCACCCAAACTATCTTTTTTATCTTCATCTTTTACCCCTTTACCATTTTTCATCTCAAATAAACTTCAATTTCTTCAAAAACCAAATTTTTCTCTCAAACTTCACTCTTCCCTTCAAAAATCCCAATTTTTTGGAACCAATTTGCGTTTGTTTCAATCGAATTCATCACATGTTGGTGTGCCCAGATTTAATAAAATTATACCAATAAGTGCTGCTGTGAAGAGAAGAAAAGAGCTTCCATTTGATAATGTGATTCAGAAAGATAAGAAGCTGAAATTTGTTCTCAAAGTGAGGAAAATACTAGTGAGTAAGCCTAGTAGGGTTATGTCTCTTCAGGAATTAGGTAAGTATAGAAGAGAATTGGGTTTGGATAAAAAGAGAAAATTAATTGTAATTTTGAGGAGATTTCCTGGTGTGTTTGAGATTGTGGAAGATGGGTGCTACTCTTTGAAATTTAGAATGACTTCTGAGGCTGAAAAGCTTTATCTTGAAGAATTGAGGGTTAGGAATGAAATGGAAGATGTTGTTGTTACTAAGCTTAGGAAATTGTTGATGATGCCGTTGGAAAAGCGGATTTTGTTAGAGAAAATTGGGCATTTGGCGAATGATTTAGGACTTCCTCGAGAATTTCGCGACACCATTTGTCATAGGTATCCAGAGTTTTTTAAAGTTGTTCAGACTGAAAGAGGTCCTGCACTTGAATTAACACATTGGGATCCTCAGCTTGCAGTTTCTGCGGCCGAGCTGTCTGCGGAGGAGAATCAAATTAGAGAAGTGGAAGAGCAGAATTTAATTATAGATAGGGCTCCTAAGTTTAATAGAGTAAAGCTTCCTAAGGGTCTTAATCTTTCAAAAGGTGAGATGAGGAAGATAATGCAGTTTAGAGACATTCCTTATATATCGCCTTACTCAGATTTCTCTATGATTGGTTTGAACACGCCGGAAAAAGAGAAGCATGCTTGTGGAGTTATTCATGAGATTTTGAGTCTTACACTTGAGAAGCGAACTCTTGTTGATAACTTCACTCATTTTCGAGAGGAGTTTCGATTCTCACAGCAATTGAGAGGGATGTTGATAAGGCACCCTGATATGTTTTATATCTCTTTGAAAGGAGACAGGGATTCTGTGTTCCTTAGGGAAGCTTATCGAGATTCTCAGTTGGTAGACAAGGACAGATTGTTACTTGTAAAGGAAAAACTTCGTTCGTTGGTTGATATTCCACGATTTCCTAAGGGTAGGGGTGCCGGTCGCACTAGAGATAGAGATGGAGATGGGATGGGAGAGAATGATATTGATAGCAGACAGGATGAAAGTGGTGAAGAGGAACAAGAATGGTCAGATGCTGATGATTTAATCAGCGATGGTGATGATGATGACGATGATATCGATGATGACTGGATGATGATGATGATGATGATACACCACCAGATTTTGATGACGAGGAGGTAG

Protein sequence

>Msa1427830

MDPKQLSLTSPKLSFLSSSFTPLPFFISNKLQFLQKPNFSLKLHSSLQKSQFFGTNLRLFQSNSSHVGVPRFNKIIPISAAVKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPSRVMSLQELGKYRRELGLDKKRKLIVILRRFPGVFEIVEDGCYSLKFRMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPQLAVSAAELSAEENQIREVEEQNLIIDRAPKFNRVKLPKGLNLSKGEMRKIMQFRDIPYISPYSDFSMIGLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVDIPRFPKGRGAGRTRDRDGDGMGENDIDSRQDESGEEEQEWSDADDLISDGDDDDDDIDDDWMMMMMMIHHQILMTRR*