AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454110 MtrunA17_Chr7g0275561 95.096 469 14 3 1 462 1 467 0.0 888
Msa1454110 MtrunA17_Chr3g0121121 39.329 328 178 5 94 408 71 390 3.53e-66 220
Msa1454110 MtrunA17_Chr6g0473071 32.048 415 244 7 52 446 12 408 4.62e-54 187
Msa1454110 MtrunA17_Chr3g0136561 32.338 402 234 7 65 446 18 401 1.62e-50 184
Msa1454110 MtrunA17_Chr1g0185761 35.613 351 208 8 66 408 22 362 2.34e-50 176
Msa1454110 MtrunA17_Chr1g0161181 35.756 344 203 8 74 409 30 363 1.76e-49 173
Msa1454110 MtrunA17_Chr3g0115901 34.731 334 199 6 85 410 63 385 4.55e-48 170
Msa1454110 MtrunA17_Chr8g0381061 31.165 369 233 6 61 419 19 376 2.90e-45 162
Msa1454110 MtrunA17_Chr6g0462491 32.292 384 225 12 50 408 9 382 3.44e-44 161
Msa1454110 MtrunA17_Chr8g0358271 28.488 344 223 6 85 418 41 371 2.36e-39 146
Msa1454110 MtrunA17_Chr7g0255281 31.054 351 226 7 68 412 32 372 2.12e-38 144
Msa1454110 MtrunA17_Chr1g0153201 31.003 329 199 7 80 404 26 330 6.73e-38 142
Msa1454110 MtrunA17_Chr3g0088781 31.003 329 199 7 80 404 26 330 7.83e-38 142
Msa1454110 MtrunA17_Chr7g0268361 28.643 398 262 8 77 461 30 418 2.12e-36 139
Msa1454110 MtrunA17_Chr3g0088811 35.102 245 138 5 164 404 3 230 9.93e-35 132
Msa1454110 MtrunA17_Chr2g0311491 33.755 237 132 7 187 408 1 227 4.84e-30 119
Msa1454110 MtrunA17_Chr3g0109091 25.679 405 260 10 69 453 42 425 4.29e-29 118
Msa1454110 MtrunA17_Chr7g0220971 27.119 354 233 8 65 408 37 375 4.30e-28 115
Msa1454110 MtrunA17_Chr6g0467331 26.692 266 182 4 134 395 82 338 5.84e-24 105
Msa1454110 MtrunA17_Chr6g0462481 35.393 178 99 6 181 349 40 210 2.89e-20 89.4
Msa1454110 MtrunA17_Chr8g0389501 29.534 193 120 5 155 338 53 238 2.66e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454110 AT4G01037.1 64.350 446 138 7 24 453 12 452 0.0 551
Msa1454110 AT5G62990.1 39.412 340 178 6 85 408 65 392 1.62e-73 240
Msa1454110 AT3G63090.1 36.919 344 199 9 74 409 33 366 4.08e-51 178
Msa1454110 AT5G48040.1 31.156 398 247 8 73 462 33 411 1.01e-50 178
Msa1454110 AT4G08940.1 34.139 331 198 8 86 410 72 388 1.01e-44 161
Msa1454110 AT5G21970.1 33.228 316 190 4 98 404 74 377 2.48e-44 161
Msa1454110 AT5G21970.2 33.228 316 190 4 98 404 74 377 2.48e-44 161
Msa1454110 AT4G33495.1 31.653 357 223 10 85 427 52 401 1.82e-43 158
Msa1454110 AT1G79120.1 29.552 335 218 5 85 408 68 395 4.28e-41 152
Msa1454110 AT1G79120.2 29.552 335 218 5 85 408 68 395 4.28e-41 152
Msa1454110 AT2G31290.1 30.030 333 209 7 80 408 29 341 1.51e-40 150
Msa1454110 AT2G31290.2 30.030 333 209 7 80 408 29 341 1.51e-40 150
Msa1454110 AT3G58520.1 28.902 346 229 5 85 420 41 379 1.69e-37 142
Msa1454110 AT1G06440.1 29.086 361 235 10 76 422 31 384 3.90e-37 140
Msa1454110 AT5G45790.2 28.646 384 242 11 79 449 68 432 4.35e-34 133
Msa1454110 AT3G58520.2 30.375 293 189 4 138 420 80 367 5.30e-33 129
Msa1454110 AT4G24320.1 29.167 360 230 9 73 421 19 364 5.86e-30 120
Msa1454110 AT5G45790.1 28.249 354 223 10 108 449 13 347 2.03e-29 118
Msa1454110 AT2G39120.1 27.536 345 227 7 73 408 25 355 1.20e-27 114
Msa1454110 AT1G71850.1 25.130 386 259 9 85 463 37 399 4.21e-27 114

Find 84 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCACAGCAGCACTTAT+TGG 0.166484 tig0035033:-24919 None:intergenic
GGGCATTTGGCGAATGATTT+AGG 0.190368 tig0035033:+25309 Msa1454110:CDS
CGATTGAAACAAACGCAAAT+TGG 0.251560 tig0035033:-24855 None:intergenic
GTTATGTCTCTTCAGGAATT+AGG 0.265530 tig0035033:+25039 Msa1454110:CDS
AAAGAGATATAAAACATATC+AGG 0.276380 tig0035033:-25801 None:intergenic
AGGTAAGTATAGAAGAGAAT+TGG 0.310601 tig0035033:+25059 Msa1454110:CDS
TACTCAGATTTCTCTATGAT+TGG 0.332939 tig0035033:+25624 Msa1454110:CDS
GTTAGAGAAAATTGGGCATT+TGG 0.343668 tig0035033:+25296 Msa1454110:CDS
ACAGGGATTCTGTGTTCCTT+AGG 0.353477 tig0035033:+25832 Msa1454110:CDS
TCTGAGTAAGGCGATATATA+AGG 0.364252 tig0035033:-25609 None:intergenic
TAGTAGGGTTATGTCTCTTC+AGG 0.364761 tig0035033:+25032 Msa1454110:CDS
GGTAAGTATAGAAGAGAATT+GGG 0.380116 tig0035033:+25060 Msa1454110:CDS
AGCAGAATTTAATTATAGAT+AGG 0.391261 tig0035033:+25499 Msa1454110:CDS
AGATAGAGATGGAGATGGGA+TGG 0.396749 tig0035033:+25974 Msa1454110:CDS
GAAGTAAGAGATAATTGTTT+AGG 0.403841 tig0035033:-24698 None:intergenic
TACTAGTGAGTAAGCCTAGT+AGG 0.410002 tig0035033:+25016 Msa1454110:CDS
TTCGCGACACCATTTGTCAT+AGG 0.422027 tig0035033:+25346 Msa1454110:CDS
AAAGTTGTTCAGACTGAAAG+AGG 0.431002 tig0035033:+25384 Msa1454110:CDS
TTCTGAATCACATTATCAAA+TGG 0.431524 tig0035033:-24955 None:intergenic
GTGTTTGAGATTGTGGAAGA+TGG 0.438846 tig0035033:+25132 Msa1454110:CDS
TGCACTTGAATTAACACATT+GGG 0.442420 tig0035033:+25410 Msa1454110:CDS
AGCTTTATCTTGAAGAATTG+AGG 0.442851 tig0035033:+25196 Msa1454110:CDS
GGACAGATTGTTACTTGTAA+AGG 0.447014 tig0035033:+25887 Msa1454110:CDS
TTTGAAAGATTAAGACCCTT+AGG 0.447819 tig0035033:-25549 None:intergenic
ATATCTCTTTGAAAGGAGAC+AGG 0.456034 tig0035033:+25814 Msa1454110:CDS
CAGGGATTCTGTGTTCCTTA+GGG 0.456981 tig0035033:+25833 Msa1454110:CDS
TCCTGGTGTGTTTGAGATTG+TGG 0.459381 tig0035033:+25125 Msa1454110:CDS
TGATATTCCACGATTTCCTA+AGG 0.460152 tig0035033:+25929 Msa1454110:CDS
ATCTTGAAGAATTGAGGGTT+AGG 0.461053 tig0035033:+25202 Msa1454110:CDS
CTCTGGATACCTATGACAAA+TGG 0.461089 tig0035033:-25355 None:intergenic
AAGGGTCTTAATCTTTCAAA+AGG 0.467749 tig0035033:+25552 Msa1454110:CDS
GCTTTATCTTGAAGAATTGA+GGG 0.468992 tig0035033:+25197 Msa1454110:CDS
TCCACGATTTCCTAAGGGTA+GGG 0.472983 tig0035033:+25935 Msa1454110:CDS
GATAGAGATGGAGATGGGAT+GGG 0.477156 tig0035033:+25975 Msa1454110:CDS
AGCTTTACTCTATTAAACTT+AGG 0.478690 tig0035033:-25525 None:intergenic
TTTCCTAAGGGTAGGGGTGC+CGG 0.484180 tig0035033:+25942 Msa1454110:CDS
GCAGAATTTAATTATAGATA+GGG 0.485320 tig0035033:+25500 Msa1454110:CDS
TAATAGAGTAAAGCTTCCTA+AGG 0.486104 tig0035033:+25533 Msa1454110:CDS
ATTGAGGGTTAGGAATGAAA+TGG 0.486805 tig0035033:+25212 Msa1454110:CDS
GTATAGAAGAGAATTGGGTT+TGG 0.491370 tig0035033:+25065 Msa1454110:CDS
AATTGAGAGGGATGTTGATA+AGG 0.491946 tig0035033:+25775 Msa1454110:CDS
TGTTTGAGATTGTGGAAGAT+GGG 0.492902 tig0035033:+25133 Msa1454110:CDS
ATCATAGAGAAATCTGAGTA+AGG 0.496079 tig0035033:-25621 None:intergenic
TGAAGAGACATAACCCTACT+AGG 0.498867 tig0035033:-25030 None:intergenic
ATCTCTATCTCTAGTGCGAC+CGG 0.501008 tig0035033:-25961 None:intergenic
ATGTTGTTGTTACTAAGCTT+AGG 0.506899 tig0035033:+25238 Msa1454110:CDS
GGAGAATCAAATTAGAGAAG+TGG 0.527418 tig0035033:+25473 Msa1454110:CDS
CGATTCTCACAGCAATTGAG+AGG 0.531952 tig0035033:+25762 Msa1454110:CDS
CAATGTGTTAATTCAAGTGC+AGG 0.536567 tig0035033:-25408 None:intergenic
GAAATTGTTGATGATGCCGT+TGG 0.539200 tig0035033:+25260 Msa1454110:CDS
TGAAATTTGTTCTCAAAGTG+AGG 0.546830 tig0035033:+24989 Msa1454110:CDS
AAGAGATATAAAACATATCA+GGG 0.552458 tig0035033:-25800 None:intergenic
GAAATTTAGAATGACTTCTG+AGG 0.553098 tig0035033:+25167 Msa1454110:CDS
ATCAGCGATGGTGATGATGA+TGG 0.556773 tig0035033:+26071 Msa1454110:CDS
TGCGGCCGAGCTGTCTGCGG+AGG 0.560311 tig0035033:+25452 Msa1454110:CDS
CCACGATTTCCTAAGGGTAG+GGG 0.563389 tig0035033:+25936 Msa1454110:CDS
AGCTTATCGAGATTCTCAGT+TGG 0.565019 tig0035033:+25857 Msa1454110:CDS
ACTAGAGATAGAGATGGAGA+TGG 0.565748 tig0035033:+25969 Msa1454110:CDS
TTCTGCGGCCGAGCTGTCTG+CGG 0.565854 tig0035033:+25449 Msa1454110:CDS
GAATGATATTGATAGCAGAC+AGG 0.573642 tig0035033:+26001 Msa1454110:CDS
ACTAGTGAGTAAGCCTAGTA+GGG 0.573985 tig0035033:+25017 Msa1454110:CDS
CTGCACTTGAATTAACACAT+TGG 0.577423 tig0035033:+25409 Msa1454110:CDS
ACAGGATGAAAGTGGTGAAG+AGG 0.582031 tig0035033:+26019 Msa1454110:CDS
ATCTTTCAAAAGGTGAGATG+AGG 0.582454 tig0035033:+25562 Msa1454110:CDS
TCCTCAGCTTGCAGTTTCTG+CGG 0.583709 tig0035033:+25434 Msa1454110:CDS
GGTCGCACTAGAGATAGAGA+TGG 0.588250 tig0035033:+25963 Msa1454110:CDS
CTAGAGATAGAGATGGAGAT+GGG 0.591787 tig0035033:+25970 Msa1454110:CDS
GATAGCAGACAGGATGAAAG+TGG 0.596310 tig0035033:+26011 Msa1454110:CDS
CCCCTACCCTTAGGAAATCG+TGG 0.600344 tig0035033:-25936 None:intergenic
GCCGCAGAAACTGCAAGCTG+AGG 0.600466 tig0035033:-25435 None:intergenic
ATTCTCCTCCGCAGACAGCT+CGG 0.606736 tig0035033:-25457 None:intergenic
GATTCTCACAGCAATTGAGA+GGG 0.608241 tig0035033:+25763 Msa1454110:CDS
TATCTCTTTGAAAGGAGACA+GGG 0.611518 tig0035033:+25815 Msa1454110:CDS
AATAGAGTAAAGCTTCCTAA+GGG 0.615219 tig0035033:+25534 Msa1454110:CDS
AATCTCGATAAGCTTCCCTA+AGG 0.627558 tig0035033:-25848 None:intergenic
GATATTCCACGATTTCCTAA+GGG 0.627966 tig0035033:+25930 Msa1454110:CDS
GTGGTGAAGAGGAACAAGAA+TGG 0.632592 tig0035033:+26030 Msa1454110:CDS
AGATTCTCAGTTGGTAGACA+AGG 0.639646 tig0035033:+25866 Msa1454110:CDS
TGATGATGCCGTTGGAAAAG+CGG 0.641358 tig0035033:+25268 Msa1454110:CDS
TCCACAATCTCAAACACACC+AGG 0.645713 tig0035033:-25126 None:intergenic
TATGATTGGTTTGAACACGC+CGG 0.658259 tig0035033:+25638 Msa1454110:CDS
GCTGATGATTTAATCAGCGA+TGG 0.662081 tig0035033:+26059 Msa1454110:CDS
TTCCACGATTTCCTAAGGGT+AGG 0.664321 tig0035033:+25934 Msa1454110:CDS
ATGGTGTCGCGAAATTCTCG+AGG 0.669888 tig0035033:-25336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGTATAATTTTATAAATCT+GGG - tig0035033:24902-24921 None:intergenic 15.0%
!!! TTGGTATAATTTTATAAATC+TGG - tig0035033:24903-24922 None:intergenic 15.0%
!!! GAAAATTAATTGTAATTTTG+AGG + tig0035033:25097-25116 Msa1454110:CDS 15.0%
!!! TGGTATAATTTTATAAATCT+GGG - tig0035033:24902-24921 None:intergenic 15.0%
!!! TTGGTATAATTTTATAAATC+TGG - tig0035033:24903-24922 None:intergenic 15.0%
!!! GAAAATTAATTGTAATTTTG+AGG + tig0035033:25097-25116 Msa1454110:CDS 15.0%
!! GAAGATAAAAAAGATAGTTT+GGG - tig0035033:24725-24744 None:intergenic 20.0%
!! TGAAGATAAAAAAGATAGTT+TGG - tig0035033:24726-24745 None:intergenic 20.0%
!!! AGTTTATTTGAGATGAAAAA+TGG - tig0035033:24764-24783 None:intergenic 20.0%
!!! AAAAAATTGGGATTTTTGAA+GGG - tig0035033:24831-24850 None:intergenic 20.0%
!! AGCAGAATTTAATTATAGAT+AGG + tig0035033:25499-25518 Msa1454110:CDS 20.0%
!! GCAGAATTTAATTATAGATA+GGG + tig0035033:25500-25519 Msa1454110:CDS 20.0%
!! AAGAGATATAAAACATATCA+GGG - tig0035033:25803-25822 None:intergenic 20.0%
!! AAAGAGATATAAAACATATC+AGG - tig0035033:25804-25823 None:intergenic 20.0%
!!! ATGTTTTATATCTCTTTGAA+AGG + tig0035033:25807-25826 Msa1454110:CDS 20.0%
!! GAAGATAAAAAAGATAGTTT+GGG - tig0035033:24725-24744 None:intergenic 20.0%
!! TGAAGATAAAAAAGATAGTT+TGG - tig0035033:24726-24745 None:intergenic 20.0%
!!! AGTTTATTTGAGATGAAAAA+TGG - tig0035033:24764-24783 None:intergenic 20.0%
!!! AAAAAATTGGGATTTTTGAA+GGG - tig0035033:24831-24850 None:intergenic 20.0%
!! AGCAGAATTTAATTATAGAT+AGG + tig0035033:25499-25518 Msa1454110:CDS 20.0%
!! GCAGAATTTAATTATAGATA+GGG + tig0035033:25500-25519 Msa1454110:CDS 20.0%
!! AAGAGATATAAAACATATCA+GGG - tig0035033:25803-25822 None:intergenic 20.0%
!! AAAGAGATATAAAACATATC+AGG - tig0035033:25804-25823 None:intergenic 20.0%
!!! ATGTTTTATATCTCTTTGAA+AGG + tig0035033:25807-25826 Msa1454110:CDS 20.0%
! GAAGTAAGAGATAATTGTTT+AGG - tig0035033:24701-24720 None:intergenic 25.0%
! TTGAGATGAAAAATGGTAAA+GGG - tig0035033:24757-24776 None:intergenic 25.0%
!! TTTGAGATGAAAAATGGTAA+AGG - tig0035033:24758-24777 None:intergenic 25.0%
! TGAAGTTTGAGAGAAAAATT+TGG - tig0035033:24803-24822 None:intergenic 25.0%
!! CAAAAAATTGGGATTTTTGA+AGG - tig0035033:24832-24851 None:intergenic 25.0%
!!! CTTCAAAAATCCCAATTTTT+TGG + tig0035033:24830-24849 Msa1454110:CDS 25.0%
!! CAAATTGGTTCCAAAAAATT+GGG - tig0035033:24843-24862 None:intergenic 25.0%
! TTCTGAATCACATTATCAAA+TGG - tig0035033:24958-24977 None:intergenic 25.0%
!! GGATTTTGTTAGAGAAAATT+GGG + tig0035033:25289-25308 Msa1454110:CDS 25.0%
!! TGAACAACTTTAAAAAACTC+TGG - tig0035033:25375-25394 None:intergenic 25.0%
! AGCTTTACTCTATTAAACTT+AGG - tig0035033:25528-25547 None:intergenic 25.0%
! GAAGTAAGAGATAATTGTTT+AGG - tig0035033:24701-24720 None:intergenic 25.0%
! TTGAGATGAAAAATGGTAAA+GGG - tig0035033:24757-24776 None:intergenic 25.0%
!! TTTGAGATGAAAAATGGTAA+AGG - tig0035033:24758-24777 None:intergenic 25.0%
! TGAAGTTTGAGAGAAAAATT+TGG - tig0035033:24803-24822 None:intergenic 25.0%
!! CAAAAAATTGGGATTTTTGA+AGG - tig0035033:24832-24851 None:intergenic 25.0%
!!! CTTCAAAAATCCCAATTTTT+TGG + tig0035033:24830-24849 Msa1454110:CDS 25.0%
!! CAAATTGGTTCCAAAAAATT+GGG - tig0035033:24843-24862 None:intergenic 25.0%
! TTCTGAATCACATTATCAAA+TGG - tig0035033:24958-24977 None:intergenic 25.0%
!! GGATTTTGTTAGAGAAAATT+GGG + tig0035033:25289-25308 Msa1454110:CDS 25.0%
!! TGAACAACTTTAAAAAACTC+TGG - tig0035033:25375-25394 None:intergenic 25.0%
! AGCTTTACTCTATTAAACTT+AGG - tig0035033:25528-25547 None:intergenic 25.0%
TGAGATGAAAAATGGTAAAG+GGG - tig0035033:24756-24775 None:intergenic 30.0%
! GCAAATTGGTTCCAAAAAAT+TGG - tig0035033:24844-24863 None:intergenic 30.0%
! TGAAATTTGTTCTCAAAGTG+AGG + tig0035033:24989-25008 Msa1454110:CDS 30.0%
AGGTAAGTATAGAAGAGAAT+TGG + tig0035033:25059-25078 Msa1454110:CDS 30.0%
GGTAAGTATAGAAGAGAATT+GGG + tig0035033:25060-25079 Msa1454110:CDS 30.0%
! GAAATTTAGAATGACTTCTG+AGG + tig0035033:25167-25186 Msa1454110:CDS 30.0%
! AGCTTTATCTTGAAGAATTG+AGG + tig0035033:25196-25215 Msa1454110:CDS 30.0%
GCTTTATCTTGAAGAATTGA+GGG + tig0035033:25197-25216 Msa1454110:CDS 30.0%
! ATGTTGTTGTTACTAAGCTT+AGG + tig0035033:25238-25257 Msa1454110:CDS 30.0%
! CGGATTTTGTTAGAGAAAAT+TGG + tig0035033:25288-25307 Msa1454110:CDS 30.0%
TGCACTTGAATTAACACATT+GGG + tig0035033:25410-25429 Msa1454110:CDS 30.0%
TAATAGAGTAAAGCTTCCTA+AGG + tig0035033:25533-25552 Msa1454110:CDS 30.0%
AATAGAGTAAAGCTTCCTAA+GGG + tig0035033:25534-25553 Msa1454110:CDS 30.0%
TTTGAAAGATTAAGACCCTT+AGG - tig0035033:25552-25571 None:intergenic 30.0%
AAGGGTCTTAATCTTTCAAA+AGG + tig0035033:25552-25571 Msa1454110:CDS 30.0%
ATCATAGAGAAATCTGAGTA+AGG - tig0035033:25624-25643 None:intergenic 30.0%
TACTCAGATTTCTCTATGAT+TGG + tig0035033:25624-25643 Msa1454110:CDS 30.0%
TGAGATGAAAAATGGTAAAG+GGG - tig0035033:24756-24775 None:intergenic 30.0%
! GCAAATTGGTTCCAAAAAAT+TGG - tig0035033:24844-24863 None:intergenic 30.0%
! TGAAATTTGTTCTCAAAGTG+AGG + tig0035033:24989-25008 Msa1454110:CDS 30.0%
AGGTAAGTATAGAAGAGAAT+TGG + tig0035033:25059-25078 Msa1454110:CDS 30.0%
GGTAAGTATAGAAGAGAATT+GGG + tig0035033:25060-25079 Msa1454110:CDS 30.0%
! GAAATTTAGAATGACTTCTG+AGG + tig0035033:25167-25186 Msa1454110:CDS 30.0%
! AGCTTTATCTTGAAGAATTG+AGG + tig0035033:25196-25215 Msa1454110:CDS 30.0%
GCTTTATCTTGAAGAATTGA+GGG + tig0035033:25197-25216 Msa1454110:CDS 30.0%
! ATGTTGTTGTTACTAAGCTT+AGG + tig0035033:25238-25257 Msa1454110:CDS 30.0%
! CGGATTTTGTTAGAGAAAAT+TGG + tig0035033:25288-25307 Msa1454110:CDS 30.0%
TGCACTTGAATTAACACATT+GGG + tig0035033:25410-25429 Msa1454110:CDS 30.0%
TAATAGAGTAAAGCTTCCTA+AGG + tig0035033:25533-25552 Msa1454110:CDS 30.0%
AATAGAGTAAAGCTTCCTAA+GGG + tig0035033:25534-25553 Msa1454110:CDS 30.0%
TTTGAAAGATTAAGACCCTT+AGG - tig0035033:25552-25571 None:intergenic 30.0%
AAGGGTCTTAATCTTTCAAA+AGG + tig0035033:25552-25571 Msa1454110:CDS 30.0%
ATCATAGAGAAATCTGAGTA+AGG - tig0035033:25624-25643 None:intergenic 30.0%
TACTCAGATTTCTCTATGAT+TGG + tig0035033:25624-25643 Msa1454110:CDS 30.0%
CGATTGAAACAAACGCAAAT+TGG - tig0035033:24858-24877 None:intergenic 35.0%
CAATCGAATTCATCACATGT+TGG + tig0035033:24872-24891 Msa1454110:intron 35.0%
GTTATGTCTCTTCAGGAATT+AGG + tig0035033:25039-25058 Msa1454110:CDS 35.0%
GTATAGAAGAGAATTGGGTT+TGG + tig0035033:25065-25084 Msa1454110:CDS 35.0%
!! GTAATTTTGAGGAGATTTCC+TGG + tig0035033:25108-25127 Msa1454110:CDS 35.0%
! TGTTTGAGATTGTGGAAGAT+GGG + tig0035033:25133-25152 Msa1454110:CDS 35.0%
ATCTTGAAGAATTGAGGGTT+AGG + tig0035033:25202-25221 Msa1454110:CDS 35.0%
ATTGAGGGTTAGGAATGAAA+TGG + tig0035033:25212-25231 Msa1454110:CDS 35.0%
!! AACAAAATCCGCTTTTCCAA+CGG - tig0035033:25279-25298 None:intergenic 35.0%
GTTAGAGAAAATTGGGCATT+TGG + tig0035033:25296-25315 Msa1454110:CDS 35.0%
AAAGTTGTTCAGACTGAAAG+AGG + tig0035033:25384-25403 Msa1454110:CDS 35.0%
CAATGTGTTAATTCAAGTGC+AGG - tig0035033:25411-25430 None:intergenic 35.0%
CTGCACTTGAATTAACACAT+TGG + tig0035033:25409-25428 Msa1454110:CDS 35.0%
GGAGAATCAAATTAGAGAAG+TGG + tig0035033:25473-25492 Msa1454110:CDS 35.0%
ATCTTTCAAAAGGTGAGATG+AGG + tig0035033:25562-25581 Msa1454110:CDS 35.0%
TCTGAGTAAGGCGATATATA+AGG - tig0035033:25612-25631 None:intergenic 35.0%
!! TAACTTCACTCATTTTCGAG+AGG + tig0035033:25734-25753 Msa1454110:CDS 35.0%
AATTGAGAGGGATGTTGATA+AGG + tig0035033:25775-25794 Msa1454110:CDS 35.0%
! ATATCTCTTTGAAAGGAGAC+AGG + tig0035033:25814-25833 Msa1454110:CDS 35.0%
! TATCTCTTTGAAAGGAGACA+GGG + tig0035033:25815-25834 Msa1454110:CDS 35.0%
! GGACAGATTGTTACTTGTAA+AGG + tig0035033:25887-25906 Msa1454110:CDS 35.0%
AAAGGAAAAACTTCGTTCGT+TGG + tig0035033:25905-25924 Msa1454110:CDS 35.0%
TGATATTCCACGATTTCCTA+AGG + tig0035033:25929-25948 Msa1454110:CDS 35.0%
GATATTCCACGATTTCCTAA+GGG + tig0035033:25930-25949 Msa1454110:CDS 35.0%
! GAATGATATTGATAGCAGAC+AGG + tig0035033:26001-26020 Msa1454110:CDS 35.0%
CGATTGAAACAAACGCAAAT+TGG - tig0035033:24858-24877 None:intergenic 35.0%
CAATCGAATTCATCACATGT+TGG + tig0035033:24872-24891 Msa1454110:intron 35.0%
GTTATGTCTCTTCAGGAATT+AGG + tig0035033:25039-25058 Msa1454110:CDS 35.0%
GTATAGAAGAGAATTGGGTT+TGG + tig0035033:25065-25084 Msa1454110:CDS 35.0%
!! GTAATTTTGAGGAGATTTCC+TGG + tig0035033:25108-25127 Msa1454110:CDS 35.0%
! TGTTTGAGATTGTGGAAGAT+GGG + tig0035033:25133-25152 Msa1454110:CDS 35.0%
ATCTTGAAGAATTGAGGGTT+AGG + tig0035033:25202-25221 Msa1454110:CDS 35.0%
ATTGAGGGTTAGGAATGAAA+TGG + tig0035033:25212-25231 Msa1454110:CDS 35.0%
!! AACAAAATCCGCTTTTCCAA+CGG - tig0035033:25279-25298 None:intergenic 35.0%
GTTAGAGAAAATTGGGCATT+TGG + tig0035033:25296-25315 Msa1454110:CDS 35.0%
AAAGTTGTTCAGACTGAAAG+AGG + tig0035033:25384-25403 Msa1454110:CDS 35.0%
CAATGTGTTAATTCAAGTGC+AGG - tig0035033:25411-25430 None:intergenic 35.0%
CTGCACTTGAATTAACACAT+TGG + tig0035033:25409-25428 Msa1454110:CDS 35.0%
GGAGAATCAAATTAGAGAAG+TGG + tig0035033:25473-25492 Msa1454110:CDS 35.0%
ATCTTTCAAAAGGTGAGATG+AGG + tig0035033:25562-25581 Msa1454110:CDS 35.0%
TCTGAGTAAGGCGATATATA+AGG - tig0035033:25612-25631 None:intergenic 35.0%
!! TAACTTCACTCATTTTCGAG+AGG + tig0035033:25734-25753 Msa1454110:CDS 35.0%
AATTGAGAGGGATGTTGATA+AGG + tig0035033:25775-25794 Msa1454110:CDS 35.0%
! ATATCTCTTTGAAAGGAGAC+AGG + tig0035033:25814-25833 Msa1454110:CDS 35.0%
! TATCTCTTTGAAAGGAGACA+GGG + tig0035033:25815-25834 Msa1454110:CDS 35.0%
! GGACAGATTGTTACTTGTAA+AGG + tig0035033:25887-25906 Msa1454110:CDS 35.0%
AAAGGAAAAACTTCGTTCGT+TGG + tig0035033:25905-25924 Msa1454110:CDS 35.0%
TGATATTCCACGATTTCCTA+AGG + tig0035033:25929-25948 Msa1454110:CDS 35.0%
GATATTCCACGATTTCCTAA+GGG + tig0035033:25930-25949 Msa1454110:CDS 35.0%
! GAATGATATTGATAGCAGAC+AGG + tig0035033:26001-26020 Msa1454110:CDS 35.0%
TACTAGTGAGTAAGCCTAGT+AGG + tig0035033:25016-25035 Msa1454110:CDS 40.0%
ACTAGTGAGTAAGCCTAGTA+GGG + tig0035033:25017-25036 Msa1454110:CDS 40.0%
TGAAGAGACATAACCCTACT+AGG - tig0035033:25033-25052 None:intergenic 40.0%
TAGTAGGGTTATGTCTCTTC+AGG + tig0035033:25032-25051 Msa1454110:CDS 40.0%
! GTGTTTGAGATTGTGGAAGA+TGG + tig0035033:25132-25151 Msa1454110:CDS 40.0%
!! GAAATTGTTGATGATGCCGT+TGG + tig0035033:25260-25279 Msa1454110:CDS 40.0%
CTCTGGATACCTATGACAAA+TGG - tig0035033:25358-25377 None:intergenic 40.0%
!! TATGATTGGTTTGAACACGC+CGG + tig0035033:25638-25657 Msa1454110:CDS 40.0%
! CAAGCATGCTTCTCTTTTTC+CGG - tig0035033:25660-25679 None:intergenic 40.0%
! GAAAAAGAGAAGCATGCTTG+TGG + tig0035033:25660-25679 Msa1454110:CDS 40.0%
GATTCTCACAGCAATTGAGA+GGG + tig0035033:25763-25782 Msa1454110:CDS 40.0%
AATCTCGATAAGCTTCCCTA+AGG - tig0035033:25851-25870 None:intergenic 40.0%
AGCTTATCGAGATTCTCAGT+TGG + tig0035033:25857-25876 Msa1454110:CDS 40.0%
!! AGATTCTCAGTTGGTAGACA+AGG + tig0035033:25866-25885 Msa1454110:CDS 40.0%
ACTAGAGATAGAGATGGAGA+TGG + tig0035033:25969-25988 Msa1454110:CDS 40.0%
CTAGAGATAGAGATGGAGAT+GGG + tig0035033:25970-25989 Msa1454110:CDS 40.0%
GCTGATGATTTAATCAGCGA+TGG + tig0035033:26059-26078 Msa1454110:CDS 40.0%
TACTAGTGAGTAAGCCTAGT+AGG + tig0035033:25016-25035 Msa1454110:CDS 40.0%
ACTAGTGAGTAAGCCTAGTA+GGG + tig0035033:25017-25036 Msa1454110:CDS 40.0%
TGAAGAGACATAACCCTACT+AGG - tig0035033:25033-25052 None:intergenic 40.0%
TAGTAGGGTTATGTCTCTTC+AGG + tig0035033:25032-25051 Msa1454110:CDS 40.0%
! GTGTTTGAGATTGTGGAAGA+TGG + tig0035033:25132-25151 Msa1454110:CDS 40.0%
!! GAAATTGTTGATGATGCCGT+TGG + tig0035033:25260-25279 Msa1454110:CDS 40.0%
CTCTGGATACCTATGACAAA+TGG - tig0035033:25358-25377 None:intergenic 40.0%
!! TATGATTGGTTTGAACACGC+CGG + tig0035033:25638-25657 Msa1454110:CDS 40.0%
! CAAGCATGCTTCTCTTTTTC+CGG - tig0035033:25660-25679 None:intergenic 40.0%
! GAAAAAGAGAAGCATGCTTG+TGG + tig0035033:25660-25679 Msa1454110:CDS 40.0%
GATTCTCACAGCAATTGAGA+GGG + tig0035033:25763-25782 Msa1454110:CDS 40.0%
AATCTCGATAAGCTTCCCTA+AGG - tig0035033:25851-25870 None:intergenic 40.0%
AGCTTATCGAGATTCTCAGT+TGG + tig0035033:25857-25876 Msa1454110:CDS 40.0%
!! AGATTCTCAGTTGGTAGACA+AGG + tig0035033:25866-25885 Msa1454110:CDS 40.0%
ACTAGAGATAGAGATGGAGA+TGG + tig0035033:25969-25988 Msa1454110:CDS 40.0%
CTAGAGATAGAGATGGAGAT+GGG + tig0035033:25970-25989 Msa1454110:CDS 40.0%
GCTGATGATTTAATCAGCGA+TGG + tig0035033:26059-26078 Msa1454110:CDS 40.0%
CTCTTCACAGCAGCACTTAT+TGG - tig0035033:24922-24941 None:intergenic 45.0%
! TCCTGGTGTGTTTGAGATTG+TGG + tig0035033:25125-25144 Msa1454110:CDS 45.0%
TCCACAATCTCAAACACACC+AGG - tig0035033:25129-25148 None:intergenic 45.0%
! TGATGATGCCGTTGGAAAAG+CGG + tig0035033:25268-25287 Msa1454110:CDS 45.0%
GGGCATTTGGCGAATGATTT+AGG + tig0035033:25309-25328 Msa1454110:CDS 45.0%
TTCGCGACACCATTTGTCAT+AGG + tig0035033:25346-25365 Msa1454110:CDS 45.0%
CGATTCTCACAGCAATTGAG+AGG + tig0035033:25762-25781 Msa1454110:CDS 45.0%
ACAGGGATTCTGTGTTCCTT+AGG + tig0035033:25832-25851 Msa1454110:CDS 45.0%
CAGGGATTCTGTGTTCCTTA+GGG + tig0035033:25833-25852 Msa1454110:CDS 45.0%
TTCCACGATTTCCTAAGGGT+AGG + tig0035033:25934-25953 Msa1454110:CDS 45.0%
TCCACGATTTCCTAAGGGTA+GGG + tig0035033:25935-25954 Msa1454110:CDS 45.0%
ATCTCTATCTCTAGTGCGAC+CGG - tig0035033:25964-25983 None:intergenic 45.0%
AGATAGAGATGGAGATGGGA+TGG + tig0035033:25974-25993 Msa1454110:CDS 45.0%
GATAGAGATGGAGATGGGAT+GGG + tig0035033:25975-25994 Msa1454110:CDS 45.0%
GATAGCAGACAGGATGAAAG+TGG + tig0035033:26011-26030 Msa1454110:CDS 45.0%
ACAGGATGAAAGTGGTGAAG+AGG + tig0035033:26019-26038 Msa1454110:CDS 45.0%
GTGGTGAAGAGGAACAAGAA+TGG + tig0035033:26030-26049 Msa1454110:CDS 45.0%
! ATCAGCGATGGTGATGATGA+TGG + tig0035033:26071-26090 Msa1454110:CDS 45.0%
CTCTTCACAGCAGCACTTAT+TGG - tig0035033:24922-24941 None:intergenic 45.0%
! TCCTGGTGTGTTTGAGATTG+TGG + tig0035033:25125-25144 Msa1454110:CDS 45.0%
TCCACAATCTCAAACACACC+AGG - tig0035033:25129-25148 None:intergenic 45.0%
! TGATGATGCCGTTGGAAAAG+CGG + tig0035033:25268-25287 Msa1454110:CDS 45.0%
GGGCATTTGGCGAATGATTT+AGG + tig0035033:25309-25328 Msa1454110:CDS 45.0%
TTCGCGACACCATTTGTCAT+AGG + tig0035033:25346-25365 Msa1454110:CDS 45.0%
CGATTCTCACAGCAATTGAG+AGG + tig0035033:25762-25781 Msa1454110:CDS 45.0%
ACAGGGATTCTGTGTTCCTT+AGG + tig0035033:25832-25851 Msa1454110:CDS 45.0%
CAGGGATTCTGTGTTCCTTA+GGG + tig0035033:25833-25852 Msa1454110:CDS 45.0%
TTCCACGATTTCCTAAGGGT+AGG + tig0035033:25934-25953 Msa1454110:CDS 45.0%
TCCACGATTTCCTAAGGGTA+GGG + tig0035033:25935-25954 Msa1454110:CDS 45.0%
ATCTCTATCTCTAGTGCGAC+CGG - tig0035033:25964-25983 None:intergenic 45.0%
AGATAGAGATGGAGATGGGA+TGG + tig0035033:25974-25993 Msa1454110:CDS 45.0%
GATAGAGATGGAGATGGGAT+GGG + tig0035033:25975-25994 Msa1454110:CDS 45.0%
GATAGCAGACAGGATGAAAG+TGG + tig0035033:26011-26030 Msa1454110:CDS 45.0%
ACAGGATGAAAGTGGTGAAG+AGG + tig0035033:26019-26038 Msa1454110:CDS 45.0%
GTGGTGAAGAGGAACAAGAA+TGG + tig0035033:26030-26049 Msa1454110:CDS 45.0%
! ATCAGCGATGGTGATGATGA+TGG + tig0035033:26071-26090 Msa1454110:CDS 45.0%
!! ATGGTGTCGCGAAATTCTCG+AGG - tig0035033:25339-25358 None:intergenic 50.0%
TCCTCAGCTTGCAGTTTCTG+CGG + tig0035033:25434-25453 Msa1454110:CDS 50.0%
CCACGATTTCCTAAGGGTAG+GGG + tig0035033:25936-25955 Msa1454110:CDS 50.0%
GGTCGCACTAGAGATAGAGA+TGG + tig0035033:25963-25982 Msa1454110:CDS 50.0%
!! ATGGTGTCGCGAAATTCTCG+AGG - tig0035033:25339-25358 None:intergenic 50.0%
TCCTCAGCTTGCAGTTTCTG+CGG + tig0035033:25434-25453 Msa1454110:CDS 50.0%
CCACGATTTCCTAAGGGTAG+GGG + tig0035033:25936-25955 Msa1454110:CDS 50.0%
GGTCGCACTAGAGATAGAGA+TGG + tig0035033:25963-25982 Msa1454110:CDS 50.0%
ATTCTCCTCCGCAGACAGCT+CGG - tig0035033:25460-25479 None:intergenic 55.0%
CCCCTACCCTTAGGAAATCG+TGG - tig0035033:25939-25958 None:intergenic 55.0%
! TTTCCTAAGGGTAGGGGTGC+CGG + tig0035033:25942-25961 Msa1454110:CDS 55.0%
ATTCTCCTCCGCAGACAGCT+CGG - tig0035033:25460-25479 None:intergenic 55.0%
CCCCTACCCTTAGGAAATCG+TGG - tig0035033:25939-25958 None:intergenic 55.0%
! TTTCCTAAGGGTAGGGGTGC+CGG + tig0035033:25942-25961 Msa1454110:CDS 55.0%
GCCGCAGAAACTGCAAGCTG+AGG - tig0035033:25438-25457 None:intergenic 60.0%
GCCGCAGAAACTGCAAGCTG+AGG - tig0035033:25438-25457 None:intergenic 60.0%
TTCTGCGGCCGAGCTGTCTG+CGG + tig0035033:25449-25468 Msa1454110:CDS 65.0%
TTCTGCGGCCGAGCTGTCTG+CGG + tig0035033:25449-25468 Msa1454110:CDS 65.0%
CGACCGGCACCCCTACCCTT+AGG - tig0035033:25948-25967 None:intergenic 70.0%
CGACCGGCACCCCTACCCTT+AGG - tig0035033:25948-25967 None:intergenic 70.0%
TGCGGCCGAGCTGTCTGCGG+AGG + tig0035033:25452-25471 Msa1454110:CDS 75.0%
TGCGGCCGAGCTGTCTGCGG+AGG + tig0035033:25452-25471 Msa1454110:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0035033 gene 24692 26100 24692 ID=Msa1454110;Name=Msa1454110
tig0035033 mRNA 24692 26100 24692 ID=Msa1454110-mRNA-1;Parent=Msa1454110;Name=Msa1454110-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|1|0|0.5|2|0|464
tig0035033 exon 24692 24889 24692 ID=Msa1454110-mRNA-1:exon:19512;Parent=Msa1454110-mRNA-1
tig0035033 exon 24904 26100 24904 ID=Msa1454110-mRNA-1:exon:19513;Parent=Msa1454110-mRNA-1
tig0035033 CDS 24692 24889 24692 ID=Msa1454110-mRNA-1:cds;Parent=Msa1454110-mRNA-1
tig0035033 CDS 24904 26100 24904 ID=Msa1454110-mRNA-1:cds;Parent=Msa1454110-mRNA-1
Gene Sequence

>Msa1454110

ATGGATCCTAAACAATTATCTCTTACTTCACCCAAACTATCTTTTTTATCTTCATCTTTTACCCCTTTACCATTTTTCATCTCAAATAAACTTCAATTTCTTCAAAAACCAAATTTTTCTCTCAAACTTCACTCTTCCCTTCAAAAATCCCAATTTTTTGGAACCAATTTGCGTTTGTTTCAATCGAATTCATCACATATTTATAAAATTATACCAATAAGTGCTGCTGTGAAGAGAAGAAAAGAGCTTCCATTTGATAATGTGATTCAGAAAGATAAGAAGCTGAAATTTGTTCTCAAAGTGAGGAAAATACTAGTGAGTAAGCCTAGTAGGGTTATGTCTCTTCAGGAATTAGGTAAGTATAGAAGAGAATTGGGTTTGGATAAAAAGAGAAAATTAATTGTAATTTTGAGGAGATTTCCTGGTGTGTTTGAGATTGTGGAAGATGGGTGCTACTCTTTGAAATTTAGAATGACTTCTGAGGCTGAAAAGCTTTATCTTGAAGAATTGAGGGTTAGGAATGAAATGGAAGATGTTGTTGTTACTAAGCTTAGGAAATTGTTGATGATGCCGTTGGAAAAGCGGATTTTGTTAGAGAAAATTGGGCATTTGGCGAATGATTTAGGACTTCCTCGAGAATTTCGCGACACCATTTGTCATAGGTATCCAGAGTTTTTTAAAGTTGTTCAGACTGAAAGAGGTCCTGCACTTGAATTAACACATTGGGATCCTCAGCTTGCAGTTTCTGCGGCCGAGCTGTCTGCGGAGGAGAATCAAATTAGAGAAGTGGAAGAGCAGAATTTAATTATAGATAGGGCTCCTAAGTTTAATAGAGTAAAGCTTCCTAAGGGTCTTAATCTTTCAAAAGGTGAGATGAGGAAGATAATGCAGTTTAGAGACATTCCTTATATATCGCCTTACTCAGATTTCTCTATGATTGGTTTGAACACGCCGGAAAAAGAGAAGCATGCTTGTGGAGTTATTCATGAGATTTTGAGTCTTACACTTGAGAAGCGAACTCTTGTTGATAACTTCACTCATTTTCGAGAGGAGTTTCGATTCTCACAGCAATTGAGAGGGATGTTGATAAGGCACCCTGATATGTTTTATATCTCTTTGAAAGGAGACAGGGATTCTGTGTTCCTTAGGGAAGCTTATCGAGATTCTCAGTTGGTAGACAAGGACAGATTGTTACTTGTAAAGGAAAAACTTCGTTCGTTGGTTGATATTCCACGATTTCCTAAGGGTAGGGGTGCCGGTCGCACTAGAGATAGAGATGGAGATGGGATGGGAGAGAATGATATTGATAGCAGACAGGATGAAAGTGGTGAAGAGGAACAAGAATGGTCAGATGCTGATGATTTAATCAGCGATGGTGATGATGATGGACGATGA

Protein sequence

>Msa1454110

MDPKQLSLTSPKLSFLSSSFTPLPFFISNKLQFLQKPNFSLKLHSSLQKSQFFGTNLRLFQSNSSHIYKIIPISAAVKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPSRVMSLQELGKYRRELGLDKKRKLIVILRRFPGVFEIVEDGCYSLKFRMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPQLAVSAAELSAEENQIREVEEQNLIIDRAPKFNRVKLPKGLNLSKGEMRKIMQFRDIPYISPYSDFSMIGLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVDIPRFPKGRGAGRTRDRDGDGMGENDIDSRQDESGEEEQEWSDADDLISDGDDDGR*