Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229790 | Msa0438720 | 0.976424 | 8.462273e-142 | -8.615850e-47 |
| Msa0438720 | Msa0545120 | 0.811385 | 7.188540e-51 | -8.615850e-47 |
| Msa0438720 | Msa0661090 | 0.809424 | 1.904841e-50 | -8.615850e-47 |
| Msa0438720 | Msa0685760 | 0.803875 | 2.829268e-49 | -8.615850e-47 |
| Msa0438720 | Msa0717310 | 0.817492 | 3.206169e-52 | -8.615850e-47 |
| Msa0438720 | Msa1101580 | 0.921560 | 3.059839e-88 | -8.615850e-47 |
| Msa0438720 | Msa1127830 | 0.801022 | 1.095275e-48 | -8.615850e-47 |
| Msa0438720 | Msa1227740 | 0.872770 | 2.463159e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTGTCCCTTCTGGATT+TGG | 0.232227 | 3_3:-3472981 | Msa0438720:three_prime_UTR |
| AAGTTGTCCCTTCTGGATTT+GGG | 0.234508 | 3_3:-3472980 | Msa0438720:three_prime_UTR |
| GGAGATGAAGTTGTCCCTTC+TGG | 0.258232 | 3_3:-3472987 | Msa0438720:three_prime_UTR |
| AAGAAACCTTCATTAAATTC+AGG | 0.300861 | 3_3:+3473019 | None:intergenic |
| AATTTATTATAAAATATAAT+AGG | 0.332510 | 3_3:+3472186 | None:intergenic |
| CAAGACTAAGAGTAGAAGAT+AGG | 0.335113 | 3_3:-3472387 | Msa0438720:three_prime_UTR |
| ACAACTACAGCTACAATTAC+AGG | 0.363670 | 3_3:-3472917 | Msa0438720:intron |
| CAGCTGGAAGATCTCCTCTA+TGG | 0.416917 | 3_3:-3473268 | Msa0438720:CDS |
| GTAGTTGTATGTATATCATA+TGG | 0.418651 | 3_3:+3472932 | None:intergenic |
| CGATTGGAGCTTCGACGAAT+CGG | 0.455917 | 3_3:+3474211 | None:intergenic |
| GTCCCTTCTGGATTTGGGGT+TGG | 0.458123 | 3_3:-3472975 | Msa0438720:three_prime_UTR |
| AGAAACCTTCATTAAATTCA+GGG | 0.460737 | 3_3:+3473020 | None:intergenic |
| CAGATCGGAAGGTGTTCGAT+TGG | 0.469245 | 3_3:+3474195 | None:intergenic |
| AATTTGATATCCAGACAACT+TGG | 0.487685 | 3_3:-3473295 | Msa0438720:intron |
| CAGACAACTTGGACTGCAGC+TGG | 0.489066 | 3_3:-3473284 | Msa0438720:CDS |
| CGATCTGAAACTACTCGCTC+AGG | 0.490869 | 3_3:-3474179 | Msa0438720:intron |
| AGGAGCCCTGAATTTAATGA+AGG | 0.493408 | 3_3:-3473025 | Msa0438720:three_prime_UTR |
| ATCGATTGACGATGAAGGAT+TGG | 0.495620 | 3_3:+3474260 | None:intergenic |
| GCTGATGGGGCTGCTGGAAG+TGG | 0.500348 | 3_3:-3473531 | Msa0438720:CDS |
| GACAAGGCTTGAGAAACAAT+TGG | 0.508496 | 3_3:-3472444 | Msa0438720:three_prime_UTR |
| AAGACTAAGAGTAGAAGATA+GGG | 0.508621 | 3_3:-3472386 | Msa0438720:three_prime_UTR |
| ACAAAACACTAGTTATACTA+AGG | 0.511410 | 3_3:+3472326 | None:intergenic |
| GACGAATCGATTGACGATGA+AGG | 0.521751 | 3_3:+3474255 | None:intergenic |
| CGAATCGGAAGGTGTTCGAT+TGG | 0.525491 | 3_3:+3474226 | None:intergenic |
| TTGGCAAAAGAGTAAAAGAC+GGG | 0.531616 | 3_3:-3472425 | Msa0438720:three_prime_UTR |
| TAAAAGACGGGGCAATTACA+AGG | 0.536908 | 3_3:-3472413 | Msa0438720:three_prime_UTR |
| ATGAAGGTTTCTTCACCTGT+GGG | 0.538137 | 3_3:-3473009 | Msa0438720:three_prime_UTR |
| AATGAAGGTTTCTTCACCTG+TGG | 0.539316 | 3_3:-3473010 | Msa0438720:three_prime_UTR |
| GATTGGGTAAAAGTTGAAGA+AGG | 0.561791 | 3_3:-3472471 | Msa0438720:three_prime_UTR |
| GAATTGCAAACCTTCCATAG+AGG | 0.570742 | 3_3:+3473254 | None:intergenic |
| ACAAGTCACCATCAATATGA+AGG | 0.583661 | 3_3:+3472259 | None:intergenic |
| AGTGGCAAGATATACTATCA+AGG | 0.587989 | 3_3:-3473513 | Msa0438720:CDS |
| AGTTGTCCCTTCTGGATTTG+GGG | 0.591313 | 3_3:-3472979 | Msa0438720:three_prime_UTR |
| TGGAGCTTCGACGAATCGGA+AGG | 0.602932 | 3_3:+3474215 | None:intergenic |
| ACACCAACCCCAAATCCAGA+AGG | 0.616176 | 3_3:+3472972 | None:intergenic |
| TGGAAGATCTCCTCTATGGA+AGG | 0.616327 | 3_3:-3473264 | Msa0438720:intron |
| GCGAGTAGTTTCAGATCGGA+AGG | 0.621345 | 3_3:+3474184 | None:intergenic |
| ATTGTGTTAAAAGAACTTTG+AGG | 0.627012 | 3_3:-3473045 | Msa0438720:exon |
| GGACAACTTCATCTCCCCAC+AGG | 0.640268 | 3_3:+3472994 | None:intergenic |
| CTGAGCGAGTAGTTTCAGAT+CGG | 0.642374 | 3_3:+3474180 | None:intergenic |
| ATTGGCAAAAGAGTAAAAGA+CGG | 0.645409 | 3_3:-3472426 | Msa0438720:three_prime_UTR |
| CACCAACCCCAAATCCAGAA+GGG | 0.652893 | 3_3:+3472973 | None:intergenic |
| TGAAGGTTTCTTCACCTGTG+GGG | 0.665032 | 3_3:-3473008 | Msa0438720:three_prime_UTR |
| AGTTGAAGAAGGCAACGACA+AGG | 0.678134 | 3_3:-3472460 | Msa0438720:three_prime_UTR |
| TGGCAAAAGAGTAAAAGACG+GGG | 0.756073 | 3_3:-3472424 | Msa0438720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTATAAAATATAAT+AGG | + | chr3_3:3474244-3474263 | None:intergenic | 0.0% |
| !! | AATTTATTATAAAATATAAT+AGG | + | chr3_3:3474244-3474263 | None:intergenic | 0.0% |
| !! | TATTTGTTTAATATGAAAAT+TGG | - | chr3_3:3473073-3473092 | Msa0438720:intron | 10.0% |
| !! | TATTTGTTTAATATGAAAAT+TGG | - | chr3_3:3473073-3473092 | Msa0438720:intron | 10.0% |
| !!! | TTTATCAACAACAAATTTTT+GGG | + | chr3_3:3472412-3472431 | None:intergenic | 15.0% |
| !!! | ATTTATCAACAACAAATTTT+TGG | + | chr3_3:3472413-3472432 | None:intergenic | 15.0% |
| !! | TTATGAAAATAAATAGAACA+AGG | + | chr3_3:3473291-3473310 | None:intergenic | 15.0% |
| !!! | ATTTTCATAATTTCAATTTG+AGG | - | chr3_3:3473301-3473320 | Msa0438720:intron | 15.0% |
| !! | ATAAAGTTTATGCAAATTAA+AGG | + | chr3_3:3473746-3473765 | None:intergenic | 15.0% |
| !!! | TTTATCAACAACAAATTTTT+GGG | + | chr3_3:3472412-3472431 | None:intergenic | 15.0% |
| !!! | ATTTATCAACAACAAATTTT+TGG | + | chr3_3:3472413-3472432 | None:intergenic | 15.0% |
| !! | TTATGAAAATAAATAGAACA+AGG | + | chr3_3:3473291-3473310 | None:intergenic | 15.0% |
| !!! | ATTTTCATAATTTCAATTTG+AGG | - | chr3_3:3473301-3473320 | Msa0438720:intron | 15.0% |
| !! | ATAAAGTTTATGCAAATTAA+AGG | + | chr3_3:3473746-3473765 | None:intergenic | 15.0% |
| !!! | TGAAAATTGAATTTTAGAGA+AGG | - | chr3_3:3472527-3472546 | Msa0438720:intron | 20.0% |
| !!! | TTTTAGAGAACTTATGAAAA+CGG | - | chr3_3:3472816-3472835 | Msa0438720:intron | 20.0% |
| !! | ATAAAGATATGTCTACAATT+TGG | - | chr3_3:3473215-3473234 | Msa0438720:intron | 20.0% |
| !! | TAAAAAGAAAAACAGAATTC+TGG | + | chr3_3:3473806-3473825 | None:intergenic | 20.0% |
| !!! | GAATTCTGTTTTTCTTTTTA+AGG | - | chr3_3:3473806-3473825 | Msa0438720:intron | 20.0% |
| !!! | ATGTATTTTATGACTAATGT+CGG | - | chr3_3:3474209-3474228 | Msa0438720:CDS | 20.0% |
| !!! | TGAAAATTGAATTTTAGAGA+AGG | - | chr3_3:3472527-3472546 | Msa0438720:intron | 20.0% |
| !!! | TTTTAGAGAACTTATGAAAA+CGG | - | chr3_3:3472816-3472835 | Msa0438720:intron | 20.0% |
| !! | ATAAAGATATGTCTACAATT+TGG | - | chr3_3:3473215-3473234 | Msa0438720:intron | 20.0% |
| !! | TAAAAAGAAAAACAGAATTC+TGG | + | chr3_3:3473806-3473825 | None:intergenic | 20.0% |
| !!! | GAATTCTGTTTTTCTTTTTA+AGG | - | chr3_3:3473806-3473825 | Msa0438720:intron | 20.0% |
| !!! | ATGTATTTTATGACTAATGT+CGG | - | chr3_3:3474209-3474228 | Msa0438720:CDS | 20.0% |
| ! | AGTGATATGTATATTTGACT+TGG | - | chr3_3:3472623-3472642 | Msa0438720:intron | 25.0% |
| ! | ATTACAAACTACTATGAGTT+TGG | - | chr3_3:3472668-3472687 | Msa0438720:intron | 25.0% |
| !! | ACTTATTTGACTTTATGTAG+TGG | - | chr3_3:3472733-3472752 | Msa0438720:intron | 25.0% |
| !! | TTTATGTAGTGGAATAAGTT+TGG | - | chr3_3:3472744-3472763 | Msa0438720:intron | 25.0% |
| !!! | TGACTTATTTTACTTATCTC+AGG | - | chr3_3:3472779-3472798 | Msa0438720:intron | 25.0% |
| !!! | GACTTATTTTACTTATCTCA+GGG | - | chr3_3:3472780-3472799 | Msa0438720:intron | 25.0% |
| !! | TTCTCTAAAAATAGCCAAAT+AGG | + | chr3_3:3472806-3472825 | None:intergenic | 25.0% |
| !!! | GGCTTTGAATATAATGATAT+AGG | + | chr3_3:3472989-3473008 | None:intergenic | 25.0% |
| ! | AACCTAAAAATAGCACATAT+TGG | + | chr3_3:3473010-3473029 | None:intergenic | 25.0% |
| ! | TCTAATCAATATGTCATTGA+AGG | + | chr3_3:3473040-3473059 | None:intergenic | 25.0% |
| !! | GTCTACAATTTGGAAAATTT+TGG | - | chr3_3:3473225-3473244 | Msa0438720:intron | 25.0% |
| ! | ATTGTGTTAAAAGAACTTTG+AGG | - | chr3_3:3473382-3473401 | Msa0438720:intron | 25.0% |
| ! | AGAAACCTTCATTAAATTCA+GGG | + | chr3_3:3473410-3473429 | None:intergenic | 25.0% |
| ! | AAGAAACCTTCATTAAATTC+AGG | + | chr3_3:3473411-3473430 | None:intergenic | 25.0% |
| !!! | CATATGGTTTTTTGATTGTT+GGG | + | chr3_3:3473482-3473501 | None:intergenic | 25.0% |
| !!! | TCATATGGTTTTTTGATTGT+TGG | + | chr3_3:3473483-3473502 | None:intergenic | 25.0% |
| ! | GTAGTTGTATGTATATCATA+TGG | + | chr3_3:3473498-3473517 | None:intergenic | 25.0% |
| ! | TATTTGTAGCTATTCAAAGT+GGG | + | chr3_3:3473697-3473716 | None:intergenic | 25.0% |
| ! | ATATTTGTAGCTATTCAAAG+TGG | + | chr3_3:3473698-3473717 | None:intergenic | 25.0% |
| ! | GAGTAAAAGAAAAACTCTAA+AGG | + | chr3_3:3473885-3473904 | None:intergenic | 25.0% |
| ! | TTTGTGTTTGATCAATCATA+TGG | - | chr3_3:3473926-3473945 | Msa0438720:intron | 25.0% |
| !!! | AATCATATGGTTTTGTAGAT+TGG | - | chr3_3:3473939-3473958 | Msa0438720:intron | 25.0% |
| !!! | ATCATATGGTTTTGTAGATT+GGG | - | chr3_3:3473940-3473959 | Msa0438720:intron | 25.0% |
| ! | ACAAAACACTAGTTATACTA+AGG | + | chr3_3:3474104-3474123 | None:intergenic | 25.0% |
| !! | ATTTTACACCTTCATATTGA+TGG | - | chr3_3:3474160-3474179 | Msa0438720:intron | 25.0% |
| !! | TGTATTTTATGACTAATGTC+GGG | - | chr3_3:3474210-3474229 | Msa0438720:CDS | 25.0% |
| ! | AGTGATATGTATATTTGACT+TGG | - | chr3_3:3472623-3472642 | Msa0438720:intron | 25.0% |
| ! | ATTACAAACTACTATGAGTT+TGG | - | chr3_3:3472668-3472687 | Msa0438720:intron | 25.0% |
| !! | ACTTATTTGACTTTATGTAG+TGG | - | chr3_3:3472733-3472752 | Msa0438720:intron | 25.0% |
| !! | TTTATGTAGTGGAATAAGTT+TGG | - | chr3_3:3472744-3472763 | Msa0438720:intron | 25.0% |
| !!! | TGACTTATTTTACTTATCTC+AGG | - | chr3_3:3472779-3472798 | Msa0438720:intron | 25.0% |
| !!! | GACTTATTTTACTTATCTCA+GGG | - | chr3_3:3472780-3472799 | Msa0438720:intron | 25.0% |
| !! | TTCTCTAAAAATAGCCAAAT+AGG | + | chr3_3:3472806-3472825 | None:intergenic | 25.0% |
| !!! | GGCTTTGAATATAATGATAT+AGG | + | chr3_3:3472989-3473008 | None:intergenic | 25.0% |
| ! | AACCTAAAAATAGCACATAT+TGG | + | chr3_3:3473010-3473029 | None:intergenic | 25.0% |
| ! | TCTAATCAATATGTCATTGA+AGG | + | chr3_3:3473040-3473059 | None:intergenic | 25.0% |
| !! | GTCTACAATTTGGAAAATTT+TGG | - | chr3_3:3473225-3473244 | Msa0438720:intron | 25.0% |
| ! | ATTGTGTTAAAAGAACTTTG+AGG | - | chr3_3:3473382-3473401 | Msa0438720:intron | 25.0% |
| ! | AGAAACCTTCATTAAATTCA+GGG | + | chr3_3:3473410-3473429 | None:intergenic | 25.0% |
| ! | AAGAAACCTTCATTAAATTC+AGG | + | chr3_3:3473411-3473430 | None:intergenic | 25.0% |
| !!! | CATATGGTTTTTTGATTGTT+GGG | + | chr3_3:3473482-3473501 | None:intergenic | 25.0% |
| !!! | TCATATGGTTTTTTGATTGT+TGG | + | chr3_3:3473483-3473502 | None:intergenic | 25.0% |
| ! | GTAGTTGTATGTATATCATA+TGG | + | chr3_3:3473498-3473517 | None:intergenic | 25.0% |
| ! | TATTTGTAGCTATTCAAAGT+GGG | + | chr3_3:3473697-3473716 | None:intergenic | 25.0% |
| ! | ATATTTGTAGCTATTCAAAG+TGG | + | chr3_3:3473698-3473717 | None:intergenic | 25.0% |
| ! | GAGTAAAAGAAAAACTCTAA+AGG | + | chr3_3:3473885-3473904 | None:intergenic | 25.0% |
| ! | TTTGTGTTTGATCAATCATA+TGG | - | chr3_3:3473926-3473945 | Msa0438720:intron | 25.0% |
| !!! | AATCATATGGTTTTGTAGAT+TGG | - | chr3_3:3473939-3473958 | Msa0438720:intron | 25.0% |
| !!! | ATCATATGGTTTTGTAGATT+GGG | - | chr3_3:3473940-3473959 | Msa0438720:intron | 25.0% |
| ! | ACAAAACACTAGTTATACTA+AGG | + | chr3_3:3474104-3474123 | None:intergenic | 25.0% |
| !! | ATTTTACACCTTCATATTGA+TGG | - | chr3_3:3474160-3474179 | Msa0438720:intron | 25.0% |
| !! | TGTATTTTATGACTAATGTC+GGG | - | chr3_3:3474210-3474229 | Msa0438720:CDS | 25.0% |
| ATCAACAAGTAGTTTCAGAT+CGG | + | chr3_3:3472279-3472298 | None:intergenic | 30.0% | |
| TATCTGTGAACGAAAATTTC+AGG | - | chr3_3:3472340-3472359 | Msa0438720:three_prime_UTR | 30.0% | |
| !! | CATTGATTTGAAGCTGTATA+AGG | - | chr3_3:3472370-3472389 | Msa0438720:three_prime_UTR | 30.0% |
| TGTATAAGGAAACAAATCTC+AGG | - | chr3_3:3472384-3472403 | Msa0438720:three_prime_UTR | 30.0% | |
| GCTGAAACAAATTCGAAATT+AGG | + | chr3_3:3472488-3472507 | None:intergenic | 30.0% | |
| TTTACTTTGTCTGCTATGAT+TGG | - | chr3_3:3472588-3472607 | Msa0438720:intron | 30.0% | |
| TTACTTTGTCTGCTATGATT+GGG | - | chr3_3:3472589-3472608 | Msa0438720:intron | 30.0% | |
| !! | GATATGTATATTTGACTTGG+TGG | - | chr3_3:3472626-3472645 | Msa0438720:intron | 30.0% |
| !!! | ATTGCACTATTTTTAGCTGA+TGG | - | chr3_3:3472881-3472900 | Msa0438720:intron | 30.0% |
| !!! | TTGCACTATTTTTAGCTGAT+GGG | - | chr3_3:3472882-3472901 | Msa0438720:intron | 30.0% |
| !!! | AGCCAATATGTGCTATTTTT+AGG | - | chr3_3:3473005-3473024 | Msa0438720:three_prime_UTR | 30.0% |
| AATTTGATATCCAGACAACT+TGG | - | chr3_3:3473132-3473151 | Msa0438720:intron | 30.0% | |
| CTGCTATTAGCATCAAATAT+AGG | + | chr3_3:3473360-3473379 | None:intergenic | 30.0% | |
| AAATTAAAGGAACTCACAGT+GGG | + | chr3_3:3473733-3473752 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTACTCTTCTCAG+AGG | - | chr3_3:3473892-3473911 | Msa0438720:intron | 30.0% |
| ATTGGCAAAAGAGTAAAAGA+CGG | - | chr3_3:3474001-3474020 | Msa0438720:intron | 30.0% | |
| AAGACTAAGAGTAGAAGATA+GGG | - | chr3_3:3474041-3474060 | Msa0438720:intron | 30.0% | |
| ATCAACAAGTAGTTTCAGAT+CGG | + | chr3_3:3472279-3472298 | None:intergenic | 30.0% | |
| TATCTGTGAACGAAAATTTC+AGG | - | chr3_3:3472340-3472359 | Msa0438720:three_prime_UTR | 30.0% | |
| !! | CATTGATTTGAAGCTGTATA+AGG | - | chr3_3:3472370-3472389 | Msa0438720:three_prime_UTR | 30.0% |
| TGTATAAGGAAACAAATCTC+AGG | - | chr3_3:3472384-3472403 | Msa0438720:three_prime_UTR | 30.0% | |
| GCTGAAACAAATTCGAAATT+AGG | + | chr3_3:3472488-3472507 | None:intergenic | 30.0% | |
| TTTACTTTGTCTGCTATGAT+TGG | - | chr3_3:3472588-3472607 | Msa0438720:intron | 30.0% | |
| TTACTTTGTCTGCTATGATT+GGG | - | chr3_3:3472589-3472608 | Msa0438720:intron | 30.0% | |
| !! | GATATGTATATTTGACTTGG+TGG | - | chr3_3:3472626-3472645 | Msa0438720:intron | 30.0% |
| !!! | ATTGCACTATTTTTAGCTGA+TGG | - | chr3_3:3472881-3472900 | Msa0438720:intron | 30.0% |
| !!! | TTGCACTATTTTTAGCTGAT+GGG | - | chr3_3:3472882-3472901 | Msa0438720:intron | 30.0% |
| !!! | AGCCAATATGTGCTATTTTT+AGG | - | chr3_3:3473005-3473024 | Msa0438720:three_prime_UTR | 30.0% |
| AATTTGATATCCAGACAACT+TGG | - | chr3_3:3473132-3473151 | Msa0438720:intron | 30.0% | |
| CTGCTATTAGCATCAAATAT+AGG | + | chr3_3:3473360-3473379 | None:intergenic | 30.0% | |
| AAATTAAAGGAACTCACAGT+GGG | + | chr3_3:3473733-3473752 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTACTCTTCTCAG+AGG | - | chr3_3:3473892-3473911 | Msa0438720:intron | 30.0% |
| ATTGGCAAAAGAGTAAAAGA+CGG | - | chr3_3:3474001-3474020 | Msa0438720:intron | 30.0% | |
| AAGACTAAGAGTAGAAGATA+GGG | - | chr3_3:3474041-3474060 | Msa0438720:intron | 30.0% | |
| ! | CAGTACAAGTTGAAGTTGAT+TGG | - | chr3_3:3472438-3472457 | Msa0438720:three_prime_UTR | 35.0% |
| TGTTCGATGAAATGATTGTG+AGG | - | chr3_3:3472559-3472578 | Msa0438720:intron | 35.0% | |
| TACTTTGTCTGCTATGATTG+GGG | - | chr3_3:3472590-3472609 | Msa0438720:intron | 35.0% | |
| TACTATGAGTTTGGTATCTC+AGG | - | chr3_3:3472677-3472696 | Msa0438720:intron | 35.0% | |
| ACTATGAGTTTGGTATCTCA+GGG | - | chr3_3:3472678-3472697 | Msa0438720:intron | 35.0% | |
| TAAACTGAAACAGTCCAAAC+AGG | + | chr3_3:3472704-3472723 | None:intergenic | 35.0% | |
| !!! | TGCACTATTTTTAGCTGATG+GGG | - | chr3_3:3472883-3472902 | Msa0438720:intron | 35.0% |
| AGTGGCAAGATATACTATCA+AGG | - | chr3_3:3472914-3472933 | Msa0438720:intron | 35.0% | |
| ! | CTGCAATGCTATATGTTTTC+AGG | - | chr3_3:3472949-3472968 | Msa0438720:three_prime_UTR | 35.0% |
| ACAACTACAGCTACAATTAC+AGG | - | chr3_3:3473510-3473529 | Msa0438720:CDS | 35.0% | |
| !!! | AATGAAATGCTGCTTTTTCC+GGG | + | chr3_3:3473588-3473607 | None:intergenic | 35.0% |
| !!! | CAATGAAATGCTGCTTTTTC+CGG | + | chr3_3:3473589-3473608 | None:intergenic | 35.0% |
| AAGCAGCATTTCATTGAGTT+AGG | - | chr3_3:3473593-3473612 | Msa0438720:intron | 35.0% | |
| AATTAAAGGAACTCACAGTG+GGG | + | chr3_3:3473732-3473751 | None:intergenic | 35.0% | |
| CAAATTAAAGGAACTCACAG+TGG | + | chr3_3:3473734-3473753 | None:intergenic | 35.0% | |
| !! | CTAAAGGCACTTCATTGTTT+AGG | + | chr3_3:3473869-3473888 | None:intergenic | 35.0% |
| GATTGGGTAAAAGTTGAAGA+AGG | - | chr3_3:3473956-3473975 | Msa0438720:intron | 35.0% | |
| TTGGCAAAAGAGTAAAAGAC+GGG | - | chr3_3:3474002-3474021 | Msa0438720:intron | 35.0% | |
| CAAGACTAAGAGTAGAAGAT+AGG | - | chr3_3:3474040-3474059 | Msa0438720:intron | 35.0% | |
| ACAAGTCACCATCAATATGA+AGG | + | chr3_3:3474171-3474190 | None:intergenic | 35.0% | |
| ! | CAGTACAAGTTGAAGTTGAT+TGG | - | chr3_3:3472438-3472457 | Msa0438720:three_prime_UTR | 35.0% |
| TGTTCGATGAAATGATTGTG+AGG | - | chr3_3:3472559-3472578 | Msa0438720:intron | 35.0% | |
| TACTTTGTCTGCTATGATTG+GGG | - | chr3_3:3472590-3472609 | Msa0438720:intron | 35.0% | |
| TACTATGAGTTTGGTATCTC+AGG | - | chr3_3:3472677-3472696 | Msa0438720:intron | 35.0% | |
| ACTATGAGTTTGGTATCTCA+GGG | - | chr3_3:3472678-3472697 | Msa0438720:intron | 35.0% | |
| TAAACTGAAACAGTCCAAAC+AGG | + | chr3_3:3472704-3472723 | None:intergenic | 35.0% | |
| !!! | TGCACTATTTTTAGCTGATG+GGG | - | chr3_3:3472883-3472902 | Msa0438720:intron | 35.0% |
| AGTGGCAAGATATACTATCA+AGG | - | chr3_3:3472914-3472933 | Msa0438720:intron | 35.0% | |
| ! | CTGCAATGCTATATGTTTTC+AGG | - | chr3_3:3472949-3472968 | Msa0438720:three_prime_UTR | 35.0% |
| ACAACTACAGCTACAATTAC+AGG | - | chr3_3:3473510-3473529 | Msa0438720:CDS | 35.0% | |
| !!! | AATGAAATGCTGCTTTTTCC+GGG | + | chr3_3:3473588-3473607 | None:intergenic | 35.0% |
| !!! | CAATGAAATGCTGCTTTTTC+CGG | + | chr3_3:3473589-3473608 | None:intergenic | 35.0% |
| AAGCAGCATTTCATTGAGTT+AGG | - | chr3_3:3473593-3473612 | Msa0438720:intron | 35.0% | |
| AATTAAAGGAACTCACAGTG+GGG | + | chr3_3:3473732-3473751 | None:intergenic | 35.0% | |
| CAAATTAAAGGAACTCACAG+TGG | + | chr3_3:3473734-3473753 | None:intergenic | 35.0% | |
| !! | CTAAAGGCACTTCATTGTTT+AGG | + | chr3_3:3473869-3473888 | None:intergenic | 35.0% |
| GATTGGGTAAAAGTTGAAGA+AGG | - | chr3_3:3473956-3473975 | Msa0438720:intron | 35.0% | |
| TTGGCAAAAGAGTAAAAGAC+GGG | - | chr3_3:3474002-3474021 | Msa0438720:intron | 35.0% | |
| CAAGACTAAGAGTAGAAGAT+AGG | - | chr3_3:3474040-3474059 | Msa0438720:intron | 35.0% | |
| ACAAGTCACCATCAATATGA+AGG | + | chr3_3:3474171-3474190 | None:intergenic | 35.0% | |
| ATCGATTGACGATGAAGGAT+TGG | + | chr3_3:3472170-3472189 | None:intergenic | 40.0% | |
| TACTTATCTCAGGGCCTATT+TGG | - | chr3_3:3472789-3472808 | Msa0438720:intron | 40.0% | |
| GAATTGCAAACCTTCCATAG+AGG | + | chr3_3:3473176-3473195 | None:intergenic | 40.0% | |
| AGGAGCCCTGAATTTAATGA+AGG | - | chr3_3:3473402-3473421 | Msa0438720:intron | 40.0% | |
| AATGAAGGTTTCTTCACCTG+TGG | - | chr3_3:3473417-3473436 | Msa0438720:intron | 40.0% | |
| ATGAAGGTTTCTTCACCTGT+GGG | - | chr3_3:3473418-3473437 | Msa0438720:intron | 40.0% | |
| AAGTTGTCCCTTCTGGATTT+GGG | - | chr3_3:3473447-3473466 | Msa0438720:intron | 40.0% | |
| AATTCTGGTACTAGAGAGTC+AGG | + | chr3_3:3473791-3473810 | None:intergenic | 40.0% | |
| GACAAGGCTTGAGAAACAAT+TGG | - | chr3_3:3473983-3474002 | Msa0438720:intron | 40.0% | |
| TGGCAAAAGAGTAAAAGACG+GGG | - | chr3_3:3474003-3474022 | Msa0438720:intron | 40.0% | |
| TAAAAGACGGGGCAATTACA+AGG | - | chr3_3:3474014-3474033 | Msa0438720:intron | 40.0% | |
| ATCGATTGACGATGAAGGAT+TGG | + | chr3_3:3472170-3472189 | None:intergenic | 40.0% | |
| TACTTATCTCAGGGCCTATT+TGG | - | chr3_3:3472789-3472808 | Msa0438720:intron | 40.0% | |
| GAATTGCAAACCTTCCATAG+AGG | + | chr3_3:3473176-3473195 | None:intergenic | 40.0% | |
| AGGAGCCCTGAATTTAATGA+AGG | - | chr3_3:3473402-3473421 | Msa0438720:intron | 40.0% | |
| AATGAAGGTTTCTTCACCTG+TGG | - | chr3_3:3473417-3473436 | Msa0438720:intron | 40.0% | |
| ATGAAGGTTTCTTCACCTGT+GGG | - | chr3_3:3473418-3473437 | Msa0438720:intron | 40.0% | |
| AAGTTGTCCCTTCTGGATTT+GGG | - | chr3_3:3473447-3473466 | Msa0438720:intron | 40.0% | |
| AATTCTGGTACTAGAGAGTC+AGG | + | chr3_3:3473791-3473810 | None:intergenic | 40.0% | |
| GACAAGGCTTGAGAAACAAT+TGG | - | chr3_3:3473983-3474002 | Msa0438720:intron | 40.0% | |
| TGGCAAAAGAGTAAAAGACG+GGG | - | chr3_3:3474003-3474022 | Msa0438720:intron | 40.0% | |
| TAAAAGACGGGGCAATTACA+AGG | - | chr3_3:3474014-3474033 | Msa0438720:intron | 40.0% | |
| GACGAATCGATTGACGATGA+AGG | + | chr3_3:3472175-3472194 | None:intergenic | 45.0% | |
| CTGAGCGAGTAGTTTCAGAT+CGG | + | chr3_3:3472250-3472269 | None:intergenic | 45.0% | |
| CTGCTATGATTGGGGCTTAT+AGG | - | chr3_3:3472598-3472617 | Msa0438720:intron | 45.0% | |
| TGGAAGATCTCCTCTATGGA+AGG | - | chr3_3:3473163-3473182 | Msa0438720:intron | 45.0% | |
| TGAAGGTTTCTTCACCTGTG+GGG | - | chr3_3:3473419-3473438 | Msa0438720:intron | 45.0% | |
| GAAGTTGTCCCTTCTGGATT+TGG | - | chr3_3:3473446-3473465 | Msa0438720:intron | 45.0% | |
| AGTTGTCCCTTCTGGATTTG+GGG | - | chr3_3:3473448-3473467 | Msa0438720:intron | 45.0% | |
| AATGTGTGATGCTGCTGTCT+TGG | - | chr3_3:3473665-3473684 | Msa0438720:intron | 45.0% | |
| AGTTGAAGAAGGCAACGACA+AGG | - | chr3_3:3473967-3473986 | Msa0438720:intron | 45.0% | |
| GACGAATCGATTGACGATGA+AGG | + | chr3_3:3472175-3472194 | None:intergenic | 45.0% | |
| CTGAGCGAGTAGTTTCAGAT+CGG | + | chr3_3:3472250-3472269 | None:intergenic | 45.0% | |
| CTGCTATGATTGGGGCTTAT+AGG | - | chr3_3:3472598-3472617 | Msa0438720:intron | 45.0% | |
| TGGAAGATCTCCTCTATGGA+AGG | - | chr3_3:3473163-3473182 | Msa0438720:intron | 45.0% | |
| TGAAGGTTTCTTCACCTGTG+GGG | - | chr3_3:3473419-3473438 | Msa0438720:intron | 45.0% | |
| GAAGTTGTCCCTTCTGGATT+TGG | - | chr3_3:3473446-3473465 | Msa0438720:intron | 45.0% | |
| AGTTGTCCCTTCTGGATTTG+GGG | - | chr3_3:3473448-3473467 | Msa0438720:intron | 45.0% | |
| AATGTGTGATGCTGCTGTCT+TGG | - | chr3_3:3473665-3473684 | Msa0438720:intron | 45.0% | |
| AGTTGAAGAAGGCAACGACA+AGG | - | chr3_3:3473967-3473986 | Msa0438720:intron | 45.0% | |
| !! | CGAATCGGAAGGTGTTCGAT+TGG | + | chr3_3:3472204-3472223 | None:intergenic | 50.0% |
| CGATTGGAGCTTCGACGAAT+CGG | + | chr3_3:3472188-3472207 | None:intergenic | 50.0% | |
| !! | CAGATCGGAAGGTGTTCGAT+TGG | + | chr3_3:3472235-3472254 | None:intergenic | 50.0% |
| GCGAGTAGTTTCAGATCGGA+AGG | + | chr3_3:3472246-3472265 | None:intergenic | 50.0% | |
| ! | CGATCTGAAACTACTCGCTC+AGG | - | chr3_3:3472248-3472267 | Msa0438720:three_prime_UTR | 50.0% |
| TTGGTATCTCAGGGCCTGTT+TGG | - | chr3_3:3472687-3472706 | Msa0438720:intron | 50.0% | |
| !!! | TTTTTAGCTGATGGGGCTGC+TGG | - | chr3_3:3472890-3472909 | Msa0438720:intron | 50.0% |
| CAGCTGGAAGATCTCCTCTA+TGG | - | chr3_3:3473159-3473178 | Msa0438720:intron | 50.0% | |
| GGAGATGAAGTTGTCCCTTC+TGG | - | chr3_3:3473440-3473459 | Msa0438720:intron | 50.0% | |
| CACCAACCCCAAATCCAGAA+GGG | + | chr3_3:3473457-3473476 | None:intergenic | 50.0% | |
| ACACCAACCCCAAATCCAGA+AGG | + | chr3_3:3473458-3473477 | None:intergenic | 50.0% | |
| CTCTATCCTGTCATTGCACC+CGG | - | chr3_3:3473567-3473586 | Msa0438720:intron | 50.0% | |
| ! | CTTTTTCCGGGTGCAATGAC+AGG | + | chr3_3:3473576-3473595 | None:intergenic | 50.0% |
| TGGTACTAGAGAGTCAGGCA+CGG | + | chr3_3:3473786-3473805 | None:intergenic | 50.0% | |
| !! | CGAATCGGAAGGTGTTCGAT+TGG | + | chr3_3:3472204-3472223 | None:intergenic | 50.0% |
| CGATTGGAGCTTCGACGAAT+CGG | + | chr3_3:3472188-3472207 | None:intergenic | 50.0% | |
| !! | CAGATCGGAAGGTGTTCGAT+TGG | + | chr3_3:3472235-3472254 | None:intergenic | 50.0% |
| GCGAGTAGTTTCAGATCGGA+AGG | + | chr3_3:3472246-3472265 | None:intergenic | 50.0% | |
| ! | CGATCTGAAACTACTCGCTC+AGG | - | chr3_3:3472248-3472267 | Msa0438720:three_prime_UTR | 50.0% |
| TTGGTATCTCAGGGCCTGTT+TGG | - | chr3_3:3472687-3472706 | Msa0438720:intron | 50.0% | |
| !!! | TTTTTAGCTGATGGGGCTGC+TGG | - | chr3_3:3472890-3472909 | Msa0438720:intron | 50.0% |
| CAGCTGGAAGATCTCCTCTA+TGG | - | chr3_3:3473159-3473178 | Msa0438720:intron | 50.0% | |
| GGAGATGAAGTTGTCCCTTC+TGG | - | chr3_3:3473440-3473459 | Msa0438720:intron | 50.0% | |
| CACCAACCCCAAATCCAGAA+GGG | + | chr3_3:3473457-3473476 | None:intergenic | 50.0% | |
| ACACCAACCCCAAATCCAGA+AGG | + | chr3_3:3473458-3473477 | None:intergenic | 50.0% | |
| CTCTATCCTGTCATTGCACC+CGG | - | chr3_3:3473567-3473586 | Msa0438720:intron | 50.0% | |
| ! | CTTTTTCCGGGTGCAATGAC+AGG | + | chr3_3:3473576-3473595 | None:intergenic | 50.0% |
| TGGTACTAGAGAGTCAGGCA+CGG | + | chr3_3:3473786-3473805 | None:intergenic | 50.0% | |
| TGGAGCTTCGACGAATCGGA+AGG | + | chr3_3:3472215-3472234 | None:intergenic | 55.0% | |
| CAGCTGCAGTCCAAGTTGTC+TGG | + | chr3_3:3473145-3473164 | None:intergenic | 55.0% | |
| CAGACAACTTGGACTGCAGC+TGG | - | chr3_3:3473143-3473162 | Msa0438720:intron | 55.0% | |
| GGACAACTTCATCTCCCCAC+AGG | + | chr3_3:3473436-3473455 | None:intergenic | 55.0% | |
| ! | GTCCCTTCTGGATTTGGGGT+TGG | - | chr3_3:3473452-3473471 | Msa0438720:intron | 55.0% |
| TGGAGCTTCGACGAATCGGA+AGG | + | chr3_3:3472215-3472234 | None:intergenic | 55.0% | |
| CAGCTGCAGTCCAAGTTGTC+TGG | + | chr3_3:3473145-3473164 | None:intergenic | 55.0% | |
| CAGACAACTTGGACTGCAGC+TGG | - | chr3_3:3473143-3473162 | Msa0438720:intron | 55.0% | |
| GGACAACTTCATCTCCCCAC+AGG | + | chr3_3:3473436-3473455 | None:intergenic | 55.0% | |
| ! | GTCCCTTCTGGATTTGGGGT+TGG | - | chr3_3:3473452-3473471 | Msa0438720:intron | 55.0% |
| GCTGATGGGGCTGCTGGAAG+TGG | - | chr3_3:3472896-3472915 | Msa0438720:intron | 65.0% | |
| GCTGATGGGGCTGCTGGAAG+TGG | - | chr3_3:3472896-3472915 | Msa0438720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 3472149 | 3474300 | 3472149 | ID=Msa0438720;Name=Msa0438720 |
| chr3_3 | mRNA | 3472149 | 3474300 | 3472149 | ID=Msa0438720-mRNA-1;Parent=Msa0438720;Name=Msa0438720-mRNA-1;_AED=0.29;_eAED=0.37;_QI=0|0.75|0.8|1|0.5|0.6|5|484|81 |
| chr3_3 | exon | 3472149 | 3472492 | 3472149 | ID=Msa0438720-mRNA-1:exon:846;Parent=Msa0438720-mRNA-1 |
| chr3_3 | exon | 3472918 | 3473069 | 3472918 | ID=Msa0438720-mRNA-1:exon:845;Parent=Msa0438720-mRNA-1 |
| chr3_3 | exon | 3473265 | 3473303 | 3473265 | ID=Msa0438720-mRNA-1:exon:844;Parent=Msa0438720-mRNA-1 |
| chr3_3 | exon | 3473479 | 3473552 | 3473479 | ID=Msa0438720-mRNA-1:exon:843;Parent=Msa0438720-mRNA-1 |
| chr3_3 | exon | 3474180 | 3474300 | 3474180 | ID=Msa0438720-mRNA-1:exon:842;Parent=Msa0438720-mRNA-1 |
| chr3_3 | CDS | 3474180 | 3474300 | 3474180 | ID=Msa0438720-mRNA-1:cds;Parent=Msa0438720-mRNA-1 |
| chr3_3 | CDS | 3473479 | 3473552 | 3473479 | ID=Msa0438720-mRNA-1:cds;Parent=Msa0438720-mRNA-1 |
| chr3_3 | CDS | 3473265 | 3473303 | 3473265 | ID=Msa0438720-mRNA-1:cds;Parent=Msa0438720-mRNA-1 |
| chr3_3 | CDS | 3473058 | 3473069 | 3473058 | ID=Msa0438720-mRNA-1:cds;Parent=Msa0438720-mRNA-1 |
| chr3_3 | three_prime_UTR | 3472918 | 3473057 | 3472918 | ID=Msa0438720-mRNA-1:three_prime_utr;Parent=Msa0438720-mRNA-1 |
| chr3_3 | three_prime_UTR | 3472149 | 3472492 | 3472149 | ID=Msa0438720-mRNA-1:three_prime_utr;Parent=Msa0438720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
