Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229790 | Msa0438720 | 0.976424 | 8.462273e-142 | -8.615850e-47 |
| Msa0229790 | Msa0526890 | 0.809532 | 1.805910e-50 | -8.615850e-47 |
| Msa0229790 | Msa0545120 | 0.816052 | 6.747243e-52 | -8.615850e-47 |
| Msa0229790 | Msa0661090 | 0.834180 | 3.479498e-56 | -8.615850e-47 |
| Msa0229790 | Msa0685760 | 0.808325 | 3.274515e-50 | -8.615850e-47 |
| Msa0229790 | Msa0696450 | 0.801593 | 8.370737e-49 | -8.615850e-47 |
| Msa0229790 | Msa0717310 | 0.818886 | 1.550704e-52 | -8.615850e-47 |
| Msa0229790 | Msa0898760 | 0.809454 | 1.876985e-50 | -8.615850e-47 |
| Msa0229790 | Msa1101580 | 0.947500 | 5.957677e-106 | -8.615850e-47 |
| Msa0229790 | Msa1127830 | 0.810414 | 1.166479e-50 | -8.615850e-47 |
| Msa0229790 | Msa1203880 | 0.802439 | 5.607217e-49 | -8.615850e-47 |
| Msa0229790 | Msa1227740 | 0.887846 | 9.968849e-73 | -8.615850e-47 |
| Msa0229790 | Msa1254710 | 0.804211 | 2.408117e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTGTCCCTTCTGGATT+TGG | 0.232227 | 2_2:-1604072 | Msa0229790:three_prime_UTR |
| AAGTTGTCCCTTCTGGATTT+GGG | 0.234508 | 2_2:-1604071 | Msa0229790:three_prime_UTR |
| GGAGATGAAGTTGTCCCTTC+TGG | 0.258232 | 2_2:-1604078 | Msa0229790:three_prime_UTR |
| AAGAAACCTTCATTAAATTC+AGG | 0.300861 | 2_2:+1604110 | None:intergenic |
| ACAAAACACTAGTTATATTA+AGG | 0.313616 | 2_2:+1603417 | None:intergenic |
| AATTTATTATAAAATATAAT+AGG | 0.332510 | 2_2:+1603278 | None:intergenic |
| CAAGACTAAGAGTAGAAGAT+AGG | 0.335113 | 2_2:-1603478 | Msa0229790:three_prime_UTR |
| ACAACTACAGCTACAATTAC+AGG | 0.363670 | 2_2:-1604008 | Msa0229790:intron |
| CAGCTGGAAGATCTCCTCTA+TGG | 0.416917 | 2_2:-1604359 | Msa0229790:CDS |
| GTAGTTGTATGTATATCATA+TGG | 0.418651 | 2_2:+1604023 | None:intergenic |
| CGATTGGAGCTTCGACGAAT+CGG | 0.455917 | 2_2:+1605302 | None:intergenic |
| GTCCCTTCTGGATTTGGGGT+TGG | 0.458123 | 2_2:-1604066 | Msa0229790:three_prime_UTR |
| AGAAACCTTCATTAAATTCA+GGG | 0.460737 | 2_2:+1604111 | None:intergenic |
| CAGATCGGAAGGTGTTCGAT+TGG | 0.469245 | 2_2:+1605286 | None:intergenic |
| AATTTGATATCCAGACAACT+TGG | 0.487685 | 2_2:-1604386 | Msa0229790:intron |
| CAGACAACTTGGACTGCAGC+TGG | 0.489066 | 2_2:-1604375 | Msa0229790:CDS |
| CGATCTGAAACTACTCGCTC+AGG | 0.490869 | 2_2:-1605270 | Msa0229790:intron |
| AGGAGCCCTGAATTTAATGA+AGG | 0.493408 | 2_2:-1604116 | Msa0229790:three_prime_UTR |
| ATCGATTGACGATGAAGGAT+TGG | 0.495620 | 2_2:+1605351 | None:intergenic |
| GCTGATGGGGCTGCTGGAAG+TGG | 0.500348 | 2_2:-1604622 | Msa0229790:CDS |
| GACAAGGCTTGAGAAACAAT+TGG | 0.508496 | 2_2:-1603535 | Msa0229790:three_prime_UTR |
| AAGACTAAGAGTAGAAGATA+GGG | 0.508621 | 2_2:-1603477 | Msa0229790:three_prime_UTR |
| GACGAATCGATTGACGATGA+AGG | 0.521751 | 2_2:+1605346 | None:intergenic |
| CGAATCGGAAGGTGTTCGAT+TGG | 0.525491 | 2_2:+1605317 | None:intergenic |
| TTGGCAAAAGAGTAAAAGAC+GGG | 0.531616 | 2_2:-1603516 | Msa0229790:three_prime_UTR |
| TAAAAGACGGGGCAATTACA+AGG | 0.536908 | 2_2:-1603504 | Msa0229790:three_prime_UTR |
| ATGAAGGTTTCTTCACCTGT+GGG | 0.538137 | 2_2:-1604100 | Msa0229790:three_prime_UTR |
| AATGAAGGTTTCTTCACCTG+TGG | 0.539316 | 2_2:-1604101 | Msa0229790:three_prime_UTR |
| GATTGGGTAAAAGTTGAAGA+AGG | 0.561791 | 2_2:-1603562 | Msa0229790:three_prime_UTR |
| GAATTGCAAACCTTCCATAG+AGG | 0.570742 | 2_2:+1604345 | None:intergenic |
| ACAAGTCACCATCAATATGA+AGG | 0.583661 | 2_2:+1603350 | None:intergenic |
| AGTGGCAAGATATACTATCA+AGG | 0.587989 | 2_2:-1604604 | Msa0229790:CDS |
| AGTTGTCCCTTCTGGATTTG+GGG | 0.591313 | 2_2:-1604070 | Msa0229790:three_prime_UTR |
| TGGAGCTTCGACGAATCGGA+AGG | 0.602932 | 2_2:+1605306 | None:intergenic |
| ACACCAACCCCAAATCCAGA+AGG | 0.616176 | 2_2:+1604063 | None:intergenic |
| TGGAAGATCTCCTCTATGGA+AGG | 0.616327 | 2_2:-1604355 | Msa0229790:intron |
| GCGAGTAGTTTCAGATCGGA+AGG | 0.621345 | 2_2:+1605275 | None:intergenic |
| ATTGTGTTAAAAGAACTTTG+AGG | 0.627012 | 2_2:-1604136 | Msa0229790:exon |
| GGACAACTTCATCTCCCCAC+AGG | 0.640268 | 2_2:+1604085 | None:intergenic |
| CTGAGCGAGTAGTTTCAGAT+CGG | 0.642374 | 2_2:+1605271 | None:intergenic |
| ATTGGCAAAAGAGTAAAAGA+CGG | 0.645409 | 2_2:-1603517 | Msa0229790:three_prime_UTR |
| CACCAACCCCAAATCCAGAA+GGG | 0.652893 | 2_2:+1604064 | None:intergenic |
| TGAAGGTTTCTTCACCTGTG+GGG | 0.665032 | 2_2:-1604099 | Msa0229790:three_prime_UTR |
| AGTTGAAGAAGGCAACGACA+AGG | 0.678134 | 2_2:-1603551 | Msa0229790:three_prime_UTR |
| TGGCAAAAGAGTAAAAGACG+GGG | 0.756073 | 2_2:-1603515 | Msa0229790:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTATAAAATATAAT+AGG | + | chr2_2:1605335-1605354 | None:intergenic | 0.0% |
| !! | AATTTATTATAAAATATAAT+AGG | + | chr2_2:1605335-1605354 | None:intergenic | 0.0% |
| !! | TATTTGTTTAATATGAAAAT+TGG | - | chr2_2:1604165-1604184 | Msa0229790:intron | 10.0% |
| !! | TATTTGTTTAATATGAAAAT+TGG | - | chr2_2:1604165-1604184 | Msa0229790:intron | 10.0% |
| !!! | TTTATCAACAACAAATTTTT+GGG | + | chr2_2:1603504-1603523 | None:intergenic | 15.0% |
| !!! | ATTTATCAACAACAAATTTT+TGG | + | chr2_2:1603505-1603524 | None:intergenic | 15.0% |
| !! | TTATGAAAATAAATAGAACA+AGG | + | chr2_2:1604383-1604402 | None:intergenic | 15.0% |
| !!! | ATTTTCATAATTTCAATTTG+AGG | - | chr2_2:1604393-1604412 | Msa0229790:intron | 15.0% |
| !! | ATAAAGTTTATGCAAATTAA+AGG | + | chr2_2:1604838-1604857 | None:intergenic | 15.0% |
| !!! | TTTATCAACAACAAATTTTT+GGG | + | chr2_2:1603504-1603523 | None:intergenic | 15.0% |
| !!! | ATTTATCAACAACAAATTTT+TGG | + | chr2_2:1603505-1603524 | None:intergenic | 15.0% |
| !! | TTATGAAAATAAATAGAACA+AGG | + | chr2_2:1604383-1604402 | None:intergenic | 15.0% |
| !!! | ATTTTCATAATTTCAATTTG+AGG | - | chr2_2:1604393-1604412 | Msa0229790:intron | 15.0% |
| !! | ATAAAGTTTATGCAAATTAA+AGG | + | chr2_2:1604838-1604857 | None:intergenic | 15.0% |
| !!! | TGAAAATTGAATTTTAGAGA+AGG | - | chr2_2:1603619-1603638 | Msa0229790:intron | 20.0% |
| !!! | TTTTAGAGAACTTATGAAAA+CGG | - | chr2_2:1603908-1603927 | Msa0229790:intron | 20.0% |
| !! | ATAAAGATATGTCTACAATT+TGG | - | chr2_2:1604307-1604326 | Msa0229790:intron | 20.0% |
| !! | TAAAAAGAAAAACAGAATTC+TGG | + | chr2_2:1604898-1604917 | None:intergenic | 20.0% |
| !!! | GAATTCTGTTTTTCTTTTTA+AGG | - | chr2_2:1604898-1604917 | Msa0229790:intron | 20.0% |
| !! | ACAAAACACTAGTTATATTA+AGG | + | chr2_2:1605196-1605215 | None:intergenic | 20.0% |
| !!! | ATGTATTTTATGACTAATGT+CGG | - | chr2_2:1605301-1605320 | Msa0229790:CDS | 20.0% |
| !!! | TGAAAATTGAATTTTAGAGA+AGG | - | chr2_2:1603619-1603638 | Msa0229790:intron | 20.0% |
| !!! | TTTTAGAGAACTTATGAAAA+CGG | - | chr2_2:1603908-1603927 | Msa0229790:intron | 20.0% |
| !! | ATAAAGATATGTCTACAATT+TGG | - | chr2_2:1604307-1604326 | Msa0229790:intron | 20.0% |
| !! | TAAAAAGAAAAACAGAATTC+TGG | + | chr2_2:1604898-1604917 | None:intergenic | 20.0% |
| !!! | GAATTCTGTTTTTCTTTTTA+AGG | - | chr2_2:1604898-1604917 | Msa0229790:intron | 20.0% |
| !! | ACAAAACACTAGTTATATTA+AGG | + | chr2_2:1605196-1605215 | None:intergenic | 20.0% |
| !!! | ATGTATTTTATGACTAATGT+CGG | - | chr2_2:1605301-1605320 | Msa0229790:CDS | 20.0% |
| ! | TTTACTTTGTCTACTATGAT+TGG | - | chr2_2:1603680-1603699 | Msa0229790:intron | 25.0% |
| ! | TTACTTTGTCTACTATGATT+GGG | - | chr2_2:1603681-1603700 | Msa0229790:intron | 25.0% |
| ! | AGTGATATGTATATTTGACT+TGG | - | chr2_2:1603715-1603734 | Msa0229790:intron | 25.0% |
| ! | ATTACAAACTACTATGAGTT+TGG | - | chr2_2:1603760-1603779 | Msa0229790:intron | 25.0% |
| !! | ACTTATTTGACTTTATGTAG+TGG | - | chr2_2:1603825-1603844 | Msa0229790:intron | 25.0% |
| !! | TTTATGTAGTGGAATAAGTT+TGG | - | chr2_2:1603836-1603855 | Msa0229790:intron | 25.0% |
| !!! | TGACTTATTTTACTTATCTC+AGG | - | chr2_2:1603871-1603890 | Msa0229790:intron | 25.0% |
| !!! | GACTTATTTTACTTATCTCA+GGG | - | chr2_2:1603872-1603891 | Msa0229790:intron | 25.0% |
| !! | TTCTCTAAAAATAGCCAAAT+AGG | + | chr2_2:1603898-1603917 | None:intergenic | 25.0% |
| !!! | GGCTTTGAATATAATGATAT+AGG | + | chr2_2:1604081-1604100 | None:intergenic | 25.0% |
| ! | AACCTAAAAATAGCACATAT+TGG | + | chr2_2:1604102-1604121 | None:intergenic | 25.0% |
| ! | TCTAATCAATATGTCATTGA+AGG | + | chr2_2:1604132-1604151 | None:intergenic | 25.0% |
| !! | GTCTACAATTTGGAAAATTT+TGG | - | chr2_2:1604317-1604336 | Msa0229790:intron | 25.0% |
| ! | ATTGTGTTAAAAGAACTTTG+AGG | - | chr2_2:1604474-1604493 | Msa0229790:intron | 25.0% |
| ! | AGAAACCTTCATTAAATTCA+GGG | + | chr2_2:1604502-1604521 | None:intergenic | 25.0% |
| ! | AAGAAACCTTCATTAAATTC+AGG | + | chr2_2:1604503-1604522 | None:intergenic | 25.0% |
| !!! | CATATGGTTTTTTGATTGTT+GGG | + | chr2_2:1604574-1604593 | None:intergenic | 25.0% |
| !!! | TCATATGGTTTTTTGATTGT+TGG | + | chr2_2:1604575-1604594 | None:intergenic | 25.0% |
| ! | GTAGTTGTATGTATATCATA+TGG | + | chr2_2:1604590-1604609 | None:intergenic | 25.0% |
| ! | TATTTGTAGCTATTCAAAGT+GGG | + | chr2_2:1604789-1604808 | None:intergenic | 25.0% |
| ! | ATATTTGTAGCTATTCAAAG+TGG | + | chr2_2:1604790-1604809 | None:intergenic | 25.0% |
| ! | GAGTAAAAGAAAAACTCTAA+AGG | + | chr2_2:1604977-1604996 | None:intergenic | 25.0% |
| ! | TTTGTGTTTGATCAATCATA+TGG | - | chr2_2:1605018-1605037 | Msa0229790:intron | 25.0% |
| !!! | AATCATATGGTTTTGTAGAT+TGG | - | chr2_2:1605031-1605050 | Msa0229790:intron | 25.0% |
| !!! | ATCATATGGTTTTGTAGATT+GGG | - | chr2_2:1605032-1605051 | Msa0229790:intron | 25.0% |
| !! | ATTTTACACCTTCATATTGA+TGG | - | chr2_2:1605252-1605271 | Msa0229790:intron | 25.0% |
| !! | TGTATTTTATGACTAATGTC+GGG | - | chr2_2:1605302-1605321 | Msa0229790:CDS | 25.0% |
| ! | TTTACTTTGTCTACTATGAT+TGG | - | chr2_2:1603680-1603699 | Msa0229790:intron | 25.0% |
| ! | TTACTTTGTCTACTATGATT+GGG | - | chr2_2:1603681-1603700 | Msa0229790:intron | 25.0% |
| ! | AGTGATATGTATATTTGACT+TGG | - | chr2_2:1603715-1603734 | Msa0229790:intron | 25.0% |
| ! | ATTACAAACTACTATGAGTT+TGG | - | chr2_2:1603760-1603779 | Msa0229790:intron | 25.0% |
| !! | ACTTATTTGACTTTATGTAG+TGG | - | chr2_2:1603825-1603844 | Msa0229790:intron | 25.0% |
| !! | TTTATGTAGTGGAATAAGTT+TGG | - | chr2_2:1603836-1603855 | Msa0229790:intron | 25.0% |
| !!! | TGACTTATTTTACTTATCTC+AGG | - | chr2_2:1603871-1603890 | Msa0229790:intron | 25.0% |
| !!! | GACTTATTTTACTTATCTCA+GGG | - | chr2_2:1603872-1603891 | Msa0229790:intron | 25.0% |
| !! | TTCTCTAAAAATAGCCAAAT+AGG | + | chr2_2:1603898-1603917 | None:intergenic | 25.0% |
| !!! | GGCTTTGAATATAATGATAT+AGG | + | chr2_2:1604081-1604100 | None:intergenic | 25.0% |
| ! | AACCTAAAAATAGCACATAT+TGG | + | chr2_2:1604102-1604121 | None:intergenic | 25.0% |
| ! | TCTAATCAATATGTCATTGA+AGG | + | chr2_2:1604132-1604151 | None:intergenic | 25.0% |
| !! | GTCTACAATTTGGAAAATTT+TGG | - | chr2_2:1604317-1604336 | Msa0229790:intron | 25.0% |
| ! | ATTGTGTTAAAAGAACTTTG+AGG | - | chr2_2:1604474-1604493 | Msa0229790:intron | 25.0% |
| ! | AGAAACCTTCATTAAATTCA+GGG | + | chr2_2:1604502-1604521 | None:intergenic | 25.0% |
| ! | AAGAAACCTTCATTAAATTC+AGG | + | chr2_2:1604503-1604522 | None:intergenic | 25.0% |
| !!! | CATATGGTTTTTTGATTGTT+GGG | + | chr2_2:1604574-1604593 | None:intergenic | 25.0% |
| !!! | TCATATGGTTTTTTGATTGT+TGG | + | chr2_2:1604575-1604594 | None:intergenic | 25.0% |
| ! | GTAGTTGTATGTATATCATA+TGG | + | chr2_2:1604590-1604609 | None:intergenic | 25.0% |
| ! | TATTTGTAGCTATTCAAAGT+GGG | + | chr2_2:1604789-1604808 | None:intergenic | 25.0% |
| ! | ATATTTGTAGCTATTCAAAG+TGG | + | chr2_2:1604790-1604809 | None:intergenic | 25.0% |
| ! | GAGTAAAAGAAAAACTCTAA+AGG | + | chr2_2:1604977-1604996 | None:intergenic | 25.0% |
| ! | TTTGTGTTTGATCAATCATA+TGG | - | chr2_2:1605018-1605037 | Msa0229790:intron | 25.0% |
| !!! | AATCATATGGTTTTGTAGAT+TGG | - | chr2_2:1605031-1605050 | Msa0229790:intron | 25.0% |
| !!! | ATCATATGGTTTTGTAGATT+GGG | - | chr2_2:1605032-1605051 | Msa0229790:intron | 25.0% |
| !! | ATTTTACACCTTCATATTGA+TGG | - | chr2_2:1605252-1605271 | Msa0229790:intron | 25.0% |
| !! | TGTATTTTATGACTAATGTC+GGG | - | chr2_2:1605302-1605321 | Msa0229790:CDS | 25.0% |
| ATCAACAAGTAGTTTCAGAT+CGG | + | chr2_2:1603371-1603390 | None:intergenic | 30.0% | |
| TATCTGTGAACGAAAATTTC+AGG | - | chr2_2:1603432-1603451 | Msa0229790:three_prime_UTR | 30.0% | |
| !! | CATTGATTTGAAGCTGTATA+AGG | - | chr2_2:1603462-1603481 | Msa0229790:three_prime_UTR | 30.0% |
| TGTATAAGGAAACAAATCTC+AGG | - | chr2_2:1603476-1603495 | Msa0229790:three_prime_UTR | 30.0% | |
| GCTGAAACAAATTCGAAATT+AGG | + | chr2_2:1603580-1603599 | None:intergenic | 30.0% | |
| TACTTTGTCTACTATGATTG+GGG | - | chr2_2:1603682-1603701 | Msa0229790:intron | 30.0% | |
| !! | GATATGTATATTTGACTTGG+TGG | - | chr2_2:1603718-1603737 | Msa0229790:intron | 30.0% |
| !!! | ATTGCACTATTTTTAGCTGA+TGG | - | chr2_2:1603973-1603992 | Msa0229790:intron | 30.0% |
| !!! | TTGCACTATTTTTAGCTGAT+GGG | - | chr2_2:1603974-1603993 | Msa0229790:intron | 30.0% |
| !!! | AGCCAATATGTGCTATTTTT+AGG | - | chr2_2:1604097-1604116 | Msa0229790:three_prime_UTR | 30.0% |
| AATTTGATATCCAGACAACT+TGG | - | chr2_2:1604224-1604243 | Msa0229790:intron | 30.0% | |
| CTGCTATTAGCATCAAATAT+AGG | + | chr2_2:1604452-1604471 | None:intergenic | 30.0% | |
| AAATTAAAGGAACTCACAGT+GGG | + | chr2_2:1604825-1604844 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTACTCTTCTCAG+AGG | - | chr2_2:1604984-1605003 | Msa0229790:intron | 30.0% |
| ATTGGCAAAAGAGTAAAAGA+CGG | - | chr2_2:1605093-1605112 | Msa0229790:intron | 30.0% | |
| AAGACTAAGAGTAGAAGATA+GGG | - | chr2_2:1605133-1605152 | Msa0229790:intron | 30.0% | |
| ATCAACAAGTAGTTTCAGAT+CGG | + | chr2_2:1603371-1603390 | None:intergenic | 30.0% | |
| TATCTGTGAACGAAAATTTC+AGG | - | chr2_2:1603432-1603451 | Msa0229790:three_prime_UTR | 30.0% | |
| !! | CATTGATTTGAAGCTGTATA+AGG | - | chr2_2:1603462-1603481 | Msa0229790:three_prime_UTR | 30.0% |
| TGTATAAGGAAACAAATCTC+AGG | - | chr2_2:1603476-1603495 | Msa0229790:three_prime_UTR | 30.0% | |
| GCTGAAACAAATTCGAAATT+AGG | + | chr2_2:1603580-1603599 | None:intergenic | 30.0% | |
| TACTTTGTCTACTATGATTG+GGG | - | chr2_2:1603682-1603701 | Msa0229790:intron | 30.0% | |
| !! | GATATGTATATTTGACTTGG+TGG | - | chr2_2:1603718-1603737 | Msa0229790:intron | 30.0% |
| !!! | ATTGCACTATTTTTAGCTGA+TGG | - | chr2_2:1603973-1603992 | Msa0229790:intron | 30.0% |
| !!! | TTGCACTATTTTTAGCTGAT+GGG | - | chr2_2:1603974-1603993 | Msa0229790:intron | 30.0% |
| !!! | AGCCAATATGTGCTATTTTT+AGG | - | chr2_2:1604097-1604116 | Msa0229790:three_prime_UTR | 30.0% |
| AATTTGATATCCAGACAACT+TGG | - | chr2_2:1604224-1604243 | Msa0229790:intron | 30.0% | |
| CTGCTATTAGCATCAAATAT+AGG | + | chr2_2:1604452-1604471 | None:intergenic | 30.0% | |
| AAATTAAAGGAACTCACAGT+GGG | + | chr2_2:1604825-1604844 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTACTCTTCTCAG+AGG | - | chr2_2:1604984-1605003 | Msa0229790:intron | 30.0% |
| ATTGGCAAAAGAGTAAAAGA+CGG | - | chr2_2:1605093-1605112 | Msa0229790:intron | 30.0% | |
| AAGACTAAGAGTAGAAGATA+GGG | - | chr2_2:1605133-1605152 | Msa0229790:intron | 30.0% | |
| ! | CAGTACAAGTTGAAGTTGAT+TGG | - | chr2_2:1603530-1603549 | Msa0229790:three_prime_UTR | 35.0% |
| TGTTCGATGAAATGATTGTG+AGG | - | chr2_2:1603651-1603670 | Msa0229790:intron | 35.0% | |
| TACTATGAGTTTGGTATCTC+AGG | - | chr2_2:1603769-1603788 | Msa0229790:intron | 35.0% | |
| ACTATGAGTTTGGTATCTCA+GGG | - | chr2_2:1603770-1603789 | Msa0229790:intron | 35.0% | |
| TAAACTGAAACAGTCCAAAC+AGG | + | chr2_2:1603796-1603815 | None:intergenic | 35.0% | |
| !!! | TGCACTATTTTTAGCTGATG+GGG | - | chr2_2:1603975-1603994 | Msa0229790:intron | 35.0% |
| AGTGGCAAGATATACTATCA+AGG | - | chr2_2:1604006-1604025 | Msa0229790:intron | 35.0% | |
| ! | CTGCAATGCTATATGTTTTC+AGG | - | chr2_2:1604041-1604060 | Msa0229790:three_prime_UTR | 35.0% |
| ACAACTACAGCTACAATTAC+AGG | - | chr2_2:1604602-1604621 | Msa0229790:CDS | 35.0% | |
| !!! | AATGAAATGCTGCTTTTTCC+GGG | + | chr2_2:1604680-1604699 | None:intergenic | 35.0% |
| !!! | CAATGAAATGCTGCTTTTTC+CGG | + | chr2_2:1604681-1604700 | None:intergenic | 35.0% |
| AAGCAGCATTTCATTGAGTT+AGG | - | chr2_2:1604685-1604704 | Msa0229790:intron | 35.0% | |
| AATTAAAGGAACTCACAGTG+GGG | + | chr2_2:1604824-1604843 | None:intergenic | 35.0% | |
| CAAATTAAAGGAACTCACAG+TGG | + | chr2_2:1604826-1604845 | None:intergenic | 35.0% | |
| !! | CTAAAGGCACTTCATTGTTT+AGG | + | chr2_2:1604961-1604980 | None:intergenic | 35.0% |
| GATTGGGTAAAAGTTGAAGA+AGG | - | chr2_2:1605048-1605067 | Msa0229790:intron | 35.0% | |
| TTGGCAAAAGAGTAAAAGAC+GGG | - | chr2_2:1605094-1605113 | Msa0229790:intron | 35.0% | |
| CAAGACTAAGAGTAGAAGAT+AGG | - | chr2_2:1605132-1605151 | Msa0229790:intron | 35.0% | |
| ACAAGTCACCATCAATATGA+AGG | + | chr2_2:1605263-1605282 | None:intergenic | 35.0% | |
| ! | CAGTACAAGTTGAAGTTGAT+TGG | - | chr2_2:1603530-1603549 | Msa0229790:three_prime_UTR | 35.0% |
| TGTTCGATGAAATGATTGTG+AGG | - | chr2_2:1603651-1603670 | Msa0229790:intron | 35.0% | |
| TACTATGAGTTTGGTATCTC+AGG | - | chr2_2:1603769-1603788 | Msa0229790:intron | 35.0% | |
| ACTATGAGTTTGGTATCTCA+GGG | - | chr2_2:1603770-1603789 | Msa0229790:intron | 35.0% | |
| TAAACTGAAACAGTCCAAAC+AGG | + | chr2_2:1603796-1603815 | None:intergenic | 35.0% | |
| !!! | TGCACTATTTTTAGCTGATG+GGG | - | chr2_2:1603975-1603994 | Msa0229790:intron | 35.0% |
| AGTGGCAAGATATACTATCA+AGG | - | chr2_2:1604006-1604025 | Msa0229790:intron | 35.0% | |
| ! | CTGCAATGCTATATGTTTTC+AGG | - | chr2_2:1604041-1604060 | Msa0229790:three_prime_UTR | 35.0% |
| ACAACTACAGCTACAATTAC+AGG | - | chr2_2:1604602-1604621 | Msa0229790:CDS | 35.0% | |
| !!! | AATGAAATGCTGCTTTTTCC+GGG | + | chr2_2:1604680-1604699 | None:intergenic | 35.0% |
| !!! | CAATGAAATGCTGCTTTTTC+CGG | + | chr2_2:1604681-1604700 | None:intergenic | 35.0% |
| AAGCAGCATTTCATTGAGTT+AGG | - | chr2_2:1604685-1604704 | Msa0229790:intron | 35.0% | |
| AATTAAAGGAACTCACAGTG+GGG | + | chr2_2:1604824-1604843 | None:intergenic | 35.0% | |
| CAAATTAAAGGAACTCACAG+TGG | + | chr2_2:1604826-1604845 | None:intergenic | 35.0% | |
| !! | CTAAAGGCACTTCATTGTTT+AGG | + | chr2_2:1604961-1604980 | None:intergenic | 35.0% |
| GATTGGGTAAAAGTTGAAGA+AGG | - | chr2_2:1605048-1605067 | Msa0229790:intron | 35.0% | |
| TTGGCAAAAGAGTAAAAGAC+GGG | - | chr2_2:1605094-1605113 | Msa0229790:intron | 35.0% | |
| CAAGACTAAGAGTAGAAGAT+AGG | - | chr2_2:1605132-1605151 | Msa0229790:intron | 35.0% | |
| ACAAGTCACCATCAATATGA+AGG | + | chr2_2:1605263-1605282 | None:intergenic | 35.0% | |
| ATCGATTGACGATGAAGGAT+TGG | + | chr2_2:1603262-1603281 | None:intergenic | 40.0% | |
| CTACTATGATTGGGGCTTAT+AGG | - | chr2_2:1603690-1603709 | Msa0229790:intron | 40.0% | |
| TACTTATCTCAGGGCCTATT+TGG | - | chr2_2:1603881-1603900 | Msa0229790:intron | 40.0% | |
| GAATTGCAAACCTTCCATAG+AGG | + | chr2_2:1604268-1604287 | None:intergenic | 40.0% | |
| AGGAGCCCTGAATTTAATGA+AGG | - | chr2_2:1604494-1604513 | Msa0229790:intron | 40.0% | |
| AATGAAGGTTTCTTCACCTG+TGG | - | chr2_2:1604509-1604528 | Msa0229790:intron | 40.0% | |
| ATGAAGGTTTCTTCACCTGT+GGG | - | chr2_2:1604510-1604529 | Msa0229790:intron | 40.0% | |
| AAGTTGTCCCTTCTGGATTT+GGG | - | chr2_2:1604539-1604558 | Msa0229790:intron | 40.0% | |
| AATTCTGGTACTAGAGAGTC+AGG | + | chr2_2:1604883-1604902 | None:intergenic | 40.0% | |
| GACAAGGCTTGAGAAACAAT+TGG | - | chr2_2:1605075-1605094 | Msa0229790:intron | 40.0% | |
| TGGCAAAAGAGTAAAAGACG+GGG | - | chr2_2:1605095-1605114 | Msa0229790:intron | 40.0% | |
| TAAAAGACGGGGCAATTACA+AGG | - | chr2_2:1605106-1605125 | Msa0229790:intron | 40.0% | |
| ATCGATTGACGATGAAGGAT+TGG | + | chr2_2:1603262-1603281 | None:intergenic | 40.0% | |
| CTACTATGATTGGGGCTTAT+AGG | - | chr2_2:1603690-1603709 | Msa0229790:intron | 40.0% | |
| TACTTATCTCAGGGCCTATT+TGG | - | chr2_2:1603881-1603900 | Msa0229790:intron | 40.0% | |
| GAATTGCAAACCTTCCATAG+AGG | + | chr2_2:1604268-1604287 | None:intergenic | 40.0% | |
| AGGAGCCCTGAATTTAATGA+AGG | - | chr2_2:1604494-1604513 | Msa0229790:intron | 40.0% | |
| AATGAAGGTTTCTTCACCTG+TGG | - | chr2_2:1604509-1604528 | Msa0229790:intron | 40.0% | |
| ATGAAGGTTTCTTCACCTGT+GGG | - | chr2_2:1604510-1604529 | Msa0229790:intron | 40.0% | |
| AAGTTGTCCCTTCTGGATTT+GGG | - | chr2_2:1604539-1604558 | Msa0229790:intron | 40.0% | |
| AATTCTGGTACTAGAGAGTC+AGG | + | chr2_2:1604883-1604902 | None:intergenic | 40.0% | |
| GACAAGGCTTGAGAAACAAT+TGG | - | chr2_2:1605075-1605094 | Msa0229790:intron | 40.0% | |
| TGGCAAAAGAGTAAAAGACG+GGG | - | chr2_2:1605095-1605114 | Msa0229790:intron | 40.0% | |
| TAAAAGACGGGGCAATTACA+AGG | - | chr2_2:1605106-1605125 | Msa0229790:intron | 40.0% | |
| GACGAATCGATTGACGATGA+AGG | + | chr2_2:1603267-1603286 | None:intergenic | 45.0% | |
| CTGAGCGAGTAGTTTCAGAT+CGG | + | chr2_2:1603342-1603361 | None:intergenic | 45.0% | |
| TGGAAGATCTCCTCTATGGA+AGG | - | chr2_2:1604255-1604274 | Msa0229790:intron | 45.0% | |
| TGAAGGTTTCTTCACCTGTG+GGG | - | chr2_2:1604511-1604530 | Msa0229790:intron | 45.0% | |
| GAAGTTGTCCCTTCTGGATT+TGG | - | chr2_2:1604538-1604557 | Msa0229790:intron | 45.0% | |
| AGTTGTCCCTTCTGGATTTG+GGG | - | chr2_2:1604540-1604559 | Msa0229790:intron | 45.0% | |
| AATGTGTGATGCTGCTGTCT+TGG | - | chr2_2:1604757-1604776 | Msa0229790:intron | 45.0% | |
| AGTTGAAGAAGGCAACGACA+AGG | - | chr2_2:1605059-1605078 | Msa0229790:intron | 45.0% | |
| GACGAATCGATTGACGATGA+AGG | + | chr2_2:1603267-1603286 | None:intergenic | 45.0% | |
| CTGAGCGAGTAGTTTCAGAT+CGG | + | chr2_2:1603342-1603361 | None:intergenic | 45.0% | |
| TGGAAGATCTCCTCTATGGA+AGG | - | chr2_2:1604255-1604274 | Msa0229790:intron | 45.0% | |
| TGAAGGTTTCTTCACCTGTG+GGG | - | chr2_2:1604511-1604530 | Msa0229790:intron | 45.0% | |
| GAAGTTGTCCCTTCTGGATT+TGG | - | chr2_2:1604538-1604557 | Msa0229790:intron | 45.0% | |
| AGTTGTCCCTTCTGGATTTG+GGG | - | chr2_2:1604540-1604559 | Msa0229790:intron | 45.0% | |
| AATGTGTGATGCTGCTGTCT+TGG | - | chr2_2:1604757-1604776 | Msa0229790:intron | 45.0% | |
| AGTTGAAGAAGGCAACGACA+AGG | - | chr2_2:1605059-1605078 | Msa0229790:intron | 45.0% | |
| !! | CGAATCGGAAGGTGTTCGAT+TGG | + | chr2_2:1603296-1603315 | None:intergenic | 50.0% |
| CGATTGGAGCTTCGACGAAT+CGG | + | chr2_2:1603280-1603299 | None:intergenic | 50.0% | |
| !! | CAGATCGGAAGGTGTTCGAT+TGG | + | chr2_2:1603327-1603346 | None:intergenic | 50.0% |
| GCGAGTAGTTTCAGATCGGA+AGG | + | chr2_2:1603338-1603357 | None:intergenic | 50.0% | |
| ! | CGATCTGAAACTACTCGCTC+AGG | - | chr2_2:1603340-1603359 | Msa0229790:three_prime_UTR | 50.0% |
| TTGGTATCTCAGGGCCTGTT+TGG | - | chr2_2:1603779-1603798 | Msa0229790:intron | 50.0% | |
| !!! | TTTTTAGCTGATGGGGCTGC+TGG | - | chr2_2:1603982-1604001 | Msa0229790:intron | 50.0% |
| CAGCTGGAAGATCTCCTCTA+TGG | - | chr2_2:1604251-1604270 | Msa0229790:intron | 50.0% | |
| GGAGATGAAGTTGTCCCTTC+TGG | - | chr2_2:1604532-1604551 | Msa0229790:intron | 50.0% | |
| CACCAACCCCAAATCCAGAA+GGG | + | chr2_2:1604549-1604568 | None:intergenic | 50.0% | |
| ACACCAACCCCAAATCCAGA+AGG | + | chr2_2:1604550-1604569 | None:intergenic | 50.0% | |
| CTCTATCCTGTCATTGCACC+CGG | - | chr2_2:1604659-1604678 | Msa0229790:intron | 50.0% | |
| ! | CTTTTTCCGGGTGCAATGAC+AGG | + | chr2_2:1604668-1604687 | None:intergenic | 50.0% |
| TGGTACTAGAGAGTCAGGCA+CGG | + | chr2_2:1604878-1604897 | None:intergenic | 50.0% | |
| !! | CGAATCGGAAGGTGTTCGAT+TGG | + | chr2_2:1603296-1603315 | None:intergenic | 50.0% |
| CGATTGGAGCTTCGACGAAT+CGG | + | chr2_2:1603280-1603299 | None:intergenic | 50.0% | |
| !! | CAGATCGGAAGGTGTTCGAT+TGG | + | chr2_2:1603327-1603346 | None:intergenic | 50.0% |
| GCGAGTAGTTTCAGATCGGA+AGG | + | chr2_2:1603338-1603357 | None:intergenic | 50.0% | |
| ! | CGATCTGAAACTACTCGCTC+AGG | - | chr2_2:1603340-1603359 | Msa0229790:three_prime_UTR | 50.0% |
| TTGGTATCTCAGGGCCTGTT+TGG | - | chr2_2:1603779-1603798 | Msa0229790:intron | 50.0% | |
| !!! | TTTTTAGCTGATGGGGCTGC+TGG | - | chr2_2:1603982-1604001 | Msa0229790:intron | 50.0% |
| CAGCTGGAAGATCTCCTCTA+TGG | - | chr2_2:1604251-1604270 | Msa0229790:intron | 50.0% | |
| GGAGATGAAGTTGTCCCTTC+TGG | - | chr2_2:1604532-1604551 | Msa0229790:intron | 50.0% | |
| CACCAACCCCAAATCCAGAA+GGG | + | chr2_2:1604549-1604568 | None:intergenic | 50.0% | |
| ACACCAACCCCAAATCCAGA+AGG | + | chr2_2:1604550-1604569 | None:intergenic | 50.0% | |
| CTCTATCCTGTCATTGCACC+CGG | - | chr2_2:1604659-1604678 | Msa0229790:intron | 50.0% | |
| ! | CTTTTTCCGGGTGCAATGAC+AGG | + | chr2_2:1604668-1604687 | None:intergenic | 50.0% |
| TGGTACTAGAGAGTCAGGCA+CGG | + | chr2_2:1604878-1604897 | None:intergenic | 50.0% | |
| TGGAGCTTCGACGAATCGGA+AGG | + | chr2_2:1603307-1603326 | None:intergenic | 55.0% | |
| CAGCTGCAGTCCAAGTTGTC+TGG | + | chr2_2:1604237-1604256 | None:intergenic | 55.0% | |
| CAGACAACTTGGACTGCAGC+TGG | - | chr2_2:1604235-1604254 | Msa0229790:intron | 55.0% | |
| GGACAACTTCATCTCCCCAC+AGG | + | chr2_2:1604528-1604547 | None:intergenic | 55.0% | |
| ! | GTCCCTTCTGGATTTGGGGT+TGG | - | chr2_2:1604544-1604563 | Msa0229790:intron | 55.0% |
| TGGAGCTTCGACGAATCGGA+AGG | + | chr2_2:1603307-1603326 | None:intergenic | 55.0% | |
| CAGCTGCAGTCCAAGTTGTC+TGG | + | chr2_2:1604237-1604256 | None:intergenic | 55.0% | |
| CAGACAACTTGGACTGCAGC+TGG | - | chr2_2:1604235-1604254 | Msa0229790:intron | 55.0% | |
| GGACAACTTCATCTCCCCAC+AGG | + | chr2_2:1604528-1604547 | None:intergenic | 55.0% | |
| ! | GTCCCTTCTGGATTTGGGGT+TGG | - | chr2_2:1604544-1604563 | Msa0229790:intron | 55.0% |
| GCTGATGGGGCTGCTGGAAG+TGG | - | chr2_2:1603988-1604007 | Msa0229790:intron | 65.0% | |
| GCTGATGGGGCTGCTGGAAG+TGG | - | chr2_2:1603988-1604007 | Msa0229790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1603241 | 1605391 | 1603241 | ID=Msa0229790;Name=Msa0229790 |
| chr2_2 | mRNA | 1603241 | 1605391 | 1603241 | ID=Msa0229790-mRNA-1;Parent=Msa0229790;Name=Msa0229790-mRNA-1;_AED=0.29;_eAED=0.37;_QI=0|0.75|0.8|1|0.5|0.6|5|483|81 |
| chr2_2 | exon | 1603241 | 1603583 | 1603241 | ID=Msa0229790-mRNA-1:exon:596;Parent=Msa0229790-mRNA-1 |
| chr2_2 | exon | 1604009 | 1604160 | 1604009 | ID=Msa0229790-mRNA-1:exon:595;Parent=Msa0229790-mRNA-1 |
| chr2_2 | exon | 1604356 | 1604394 | 1604356 | ID=Msa0229790-mRNA-1:exon:594;Parent=Msa0229790-mRNA-1 |
| chr2_2 | exon | 1604570 | 1604643 | 1604570 | ID=Msa0229790-mRNA-1:exon:593;Parent=Msa0229790-mRNA-1 |
| chr2_2 | exon | 1605271 | 1605391 | 1605271 | ID=Msa0229790-mRNA-1:exon:592;Parent=Msa0229790-mRNA-1 |
| chr2_2 | CDS | 1605271 | 1605391 | 1605271 | ID=Msa0229790-mRNA-1:cds;Parent=Msa0229790-mRNA-1 |
| chr2_2 | CDS | 1604570 | 1604643 | 1604570 | ID=Msa0229790-mRNA-1:cds;Parent=Msa0229790-mRNA-1 |
| chr2_2 | CDS | 1604356 | 1604394 | 1604356 | ID=Msa0229790-mRNA-1:cds;Parent=Msa0229790-mRNA-1 |
| chr2_2 | CDS | 1604149 | 1604160 | 1604149 | ID=Msa0229790-mRNA-1:cds;Parent=Msa0229790-mRNA-1 |
| chr2_2 | three_prime_UTR | 1604009 | 1604148 | 1604009 | ID=Msa0229790-mRNA-1:three_prime_utr;Parent=Msa0229790-mRNA-1 |
| chr2_2 | three_prime_UTR | 1603241 | 1603583 | 1603241 | ID=Msa0229790-mRNA-1:three_prime_utr;Parent=Msa0229790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
