AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127830 MtrunA17_Chr7g0270991 95.720 257 10 1 1 257 6 261 0.0 506
Msa1127830 MtrunA17_Chr1g0193711 70.543 258 68 6 1 257 1 251 4.00e-118 338
Msa1127830 MtrunA17_Chr1g0213971 65.775 187 61 1 72 255 57 243 3.47e-88 261
Msa1127830 MtrunA17_Chr3g0104751 61.413 184 59 3 83 255 21 203 4.93e-75 226
Msa1127830 MtrunA17_Chr3g0113441 63.158 171 55 2 90 253 62 231 1.07e-71 219
Msa1127830 MtrunA17_Chr4g0038431 59.064 171 62 2 90 253 2 171 1.88e-68 209
Msa1127830 MtrunA17_Chr3g0145501 58.480 171 63 2 93 256 13 182 1.90e-66 204
Msa1127830 MtrunA17_Chr7g0274841 65.753 146 43 1 93 231 5 150 6.69e-66 202
Msa1127830 MtrunA17_Chr8g0353571 57.576 165 64 2 95 253 21 185 4.45e-62 193
Msa1127830 MtrunA17_Chr4g0045321 55.556 171 68 1 92 254 4 174 5.40e-61 196
Msa1127830 MtrunA17_Chr8g0374621 54.438 169 69 1 93 253 5 173 9.39e-60 192
Msa1127830 MtrunA17_Chr7g0260441 58.333 168 61 2 94 253 9 175 1.16e-59 199
Msa1127830 MtrunA17_Chr4g0037281 49.206 189 87 3 74 254 29 216 7.79e-58 184
Msa1127830 MtrunA17_Chr2g0321111 54.054 148 63 4 104 250 469 612 1.08e-43 155
Msa1127830 MtrunA17_Chr7g0266721 50.000 146 68 4 104 248 17 158 1.59e-39 134
Msa1127830 MtrunA17_Chr3g0138061 46.784 171 82 2 95 257 13 182 8.56e-39 143
Msa1127830 MtrunA17_Chr1g0149061 43.716 183 87 4 86 257 1 178 2.56e-38 142
Msa1127830 MtrunA17_Chr8g0351571 51.034 145 66 4 104 247 8 148 3.04e-35 124
Msa1127830 MtrunA17_Chr5g0401141 46.528 144 72 4 106 248 354 493 3.24e-30 118
Msa1127830 MtrunA17_Chr3g0122871 66.667 60 20 0 177 236 55 114 1.73e-25 97.1
Msa1127830 MtrunA17_Chr2g0288371 43.333 150 74 7 106 250 22 165 4.12e-22 94.7
Msa1127830 MtrunA17_Chr6g0484281 40.602 133 66 5 104 227 8 136 1.14e-18 85.1
Msa1127830 MtrunA17_Chr8g0357591 39.850 133 67 5 104 227 8 136 1.50e-17 81.6
Msa1127830 MtrunA17_Chr1g0199071 34.437 151 82 6 104 250 87 224 2.16e-16 75.9
Msa1127830 MtrunA17_Chr2g0305071 31.333 150 84 6 105 235 91 240 3.75e-15 73.6
Msa1127830 MtrunA17_Chr1g0163031 29.932 147 95 5 104 250 86 224 1.92e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127830 AT3G62030.3 60.465 258 100 1 1 256 1 258 8.18e-109 315
Msa1127830 AT3G62030.1 60.232 259 100 1 1 256 1 259 2.03e-108 314
Msa1127830 AT3G62030.2 69.585 217 59 3 45 257 100 313 2.44e-105 308
Msa1127830 AT5G13120.1 61.780 191 70 1 68 255 66 256 4.49e-87 259
Msa1127830 AT5G13120.2 61.780 191 70 1 68 255 62 252 5.06e-87 259
Msa1127830 AT5G58710.1 61.497 187 60 3 76 255 23 204 3.78e-76 230
Msa1127830 AT2G29960.1 60.963 187 65 2 76 255 16 201 1.80e-75 228
Msa1127830 AT2G29960.3 60.963 187 65 2 76 255 16 201 1.80e-75 228
Msa1127830 AT2G21130.1 61.310 168 57 2 93 253 6 172 5.78e-70 213
Msa1127830 AT4G38740.1 60.119 168 59 2 93 253 5 171 1.29e-68 209
Msa1127830 AT2G16600.1 58.824 170 58 3 93 253 6 172 5.95e-68 208
Msa1127830 AT3G56070.1 60.714 168 58 2 93 253 5 171 9.19e-68 207
Msa1127830 AT3G56070.2 60.714 168 58 2 93 253 5 171 9.19e-68 207
Msa1127830 AT3G55920.1 53.731 201 75 3 72 255 29 228 1.27e-67 209
Msa1127830 AT2G29960.2 56.684 187 63 3 76 255 16 191 2.71e-66 204
Msa1127830 AT4G34870.1 54.913 173 60 3 93 253 5 171 5.34e-61 190
Msa1127830 AT2G15790.1 55.556 171 68 1 92 254 4 174 4.12e-60 194
Msa1127830 AT3G63400.2 55.429 175 69 2 86 252 1 174 6.08e-60 194
Msa1127830 AT4G34960.1 52.571 175 76 1 89 256 44 218 6.99e-59 186
Msa1127830 AT2G38730.1 55.758 165 67 2 95 253 35 199 8.74e-59 186
Msa1127830 AT3G63400.3 55.429 175 69 2 86 252 1 174 1.58e-58 195
Msa1127830 AT3G63400.4 55.429 175 69 2 86 252 1 174 1.58e-58 195
Msa1127830 AT3G63400.1 55.429 175 69 2 86 252 1 174 1.58e-58 195
Msa1127830 AT2G16600.2 53.988 163 55 3 93 253 6 150 5.74e-57 179
Msa1127830 AT4G34960.2 57.031 128 48 1 89 209 44 171 1.24e-46 153
Msa1127830 AT3G44600.1 54.730 148 62 4 104 250 483 626 6.64e-43 154
Msa1127830 AT2G36130.1 49.315 146 69 4 104 248 17 158 3.77e-39 134
Msa1127830 AT1G01940.1 49.655 145 68 4 104 247 8 148 2.23e-35 124
Msa1127830 AT4G32420.1 43.017 179 85 4 86 252 1 174 9.79e-34 129
Msa1127830 AT4G32420.5 43.017 179 85 4 86 252 1 174 9.79e-34 129
Msa1127830 AT4G32420.3 43.017 179 85 4 86 252 1 174 9.79e-34 129
Msa1127830 AT4G32420.6 43.017 179 85 4 86 252 1 174 9.79e-34 129
Msa1127830 AT4G32420.4 44.805 154 77 1 86 231 1 154 2.92e-33 128
Msa1127830 AT3G22920.1 41.520 171 82 6 93 253 5 167 7.84e-33 120
Msa1127830 AT5G67530.1 45.139 144 74 4 106 248 353 492 3.03e-30 119
Msa1127830 AT4G33060.1 44.056 143 73 6 106 245 22 160 6.27e-25 103
Msa1127830 AT1G53720.2 37.908 153 82 5 104 247 8 156 1.33e-19 87.0
Msa1127830 AT1G53720.1 37.908 153 82 5 104 247 8 156 2.60e-19 87.4
Msa1127830 AT2G47320.1 31.081 148 95 4 106 253 87 227 8.54e-15 72.0
Msa1127830 AT3G66654.4 29.677 155 83 4 104 247 88 227 4.84e-12 64.3
Msa1127830 AT3G66654.2 29.677 155 83 4 104 247 88 227 4.84e-12 64.3
Msa1127830 AT3G66654.3 29.677 155 83 4 104 247 88 227 4.84e-12 64.3
Msa1127830 AT3G66654.1 29.677 155 83 4 104 247 88 227 4.84e-12 64.3
Msa1127830 AT3G66654.5 29.677 155 83 4 104 247 88 227 4.84e-12 64.3

Find 74 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATGCAAATCATATAAT+TGG 0.143786 7_3:-79482933 None:intergenic
ATCTTTGGGCAGAATCGTTT+TGG 0.218231 7_3:+79481538 Msa1127830:CDS
GCATAAGTATCAACCATCTA+TGG 0.238764 7_3:-79482672 None:intergenic
AATTGACTACCATTGGTATT+AGG 0.256008 7_3:-79482215 None:intergenic
AATCAAAGAATTCATGATTC+AGG 0.260889 7_3:+79481763 Msa1127830:CDS
TAGCCAAGATGTGTTGTCTA+TGG 0.302130 7_3:+79480560 Msa1127830:CDS
ACCTTTGACTCAAGAAGCTT+TGG 0.335511 7_3:-79480350 None:intergenic
AACATGCAAATCATATAATT+GGG 0.349416 7_3:-79482932 None:intergenic
TCACATACCGTGTCACAAAT+TGG 0.359007 7_3:+79480591 Msa1127830:CDS
CTGCAGAATGGATTGTCATT+TGG 0.361297 7_3:+79482789 Msa1127830:three_prime_UTR
GACAATCGACATGTCGTGTT+TGG 0.370445 7_3:+79482542 Msa1127830:CDS
CACCTAACTGCAACAAGAAA+TGG 0.380372 7_3:-79480384 None:intergenic
CTCAAGAAGCTTTGGTTGGT+TGG 0.392775 7_3:-79480342 None:intergenic
ATCGGTGGAGCTAGTATCTA+TGG 0.397379 7_3:+79481973 Msa1127830:CDS
GAAACATTTGGTAGTCACTT+TGG 0.413346 7_3:-79481492 None:intergenic
TAAAATCACATGTTGCTTTG+AGG 0.423621 7_3:+79480634 Msa1127830:CDS
TTCCATTGGCTGCAGGGAAT+CGG 0.423673 7_3:+79481955 Msa1127830:intron
TGCGGAGAACTGCCCATAGA+TGG 0.424005 7_3:+79482659 Msa1127830:CDS
GTGTTTGGACATGTTATTGA+TGG 0.424405 7_3:+79482557 Msa1127830:CDS
TGTTTCTTTGACGTAGAAGC+TGG 0.427261 7_3:+79481509 Msa1127830:CDS
AATTTCCGTGCTTTGTGCAC+AGG 0.435339 7_3:+79481596 Msa1127830:CDS
ATCAAAGAATTCATGATTCA+GGG 0.448304 7_3:+79481764 Msa1127830:CDS
TGTGAGGACACTTGAGTCTC+AGG 0.450710 7_3:+79482589 Msa1127830:CDS
TTCTACGTCAAAGAAACATT+TGG 0.450882 7_3:-79481504 None:intergenic
AACCATTTCTTGTTGCAGTT+AGG 0.451429 7_3:+79480382 Msa1127830:five_prime_UTR
GAACCATAGACAACACATCT+TGG 0.462350 7_3:-79480563 None:intergenic
TAATCTTGTGCAGGAGAGAA+AGG 0.477763 7_3:+79481707 Msa1127830:intron
TTCTTTGATTATACGATGGA+AGG 0.485601 7_3:-79481750 None:intergenic
TGAAAATGAGAAAGTGGGTT+GGG 0.490663 7_3:-79480443 None:intergenic
TTCTTGTTGCAGTTAGGTGA+TGG 0.492720 7_3:+79480388 Msa1127830:exon
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 7_3:+79482167 Msa1127830:intron
CAAGATCAATTAGATATAGT+AGG 0.497529 7_3:+79480682 Msa1127830:CDS
GAGTGAAAATTGTACTCAAA+CGG 0.500982 7_3:-79482714 None:intergenic
AAACTTGCTAACATGATCAC+TGG 0.501624 7_3:-79482750 None:intergenic
TGGACATGTTATTGATGGAA+TGG 0.518793 7_3:+79482562 Msa1127830:CDS
ACCAAAGCTTCTTGAGTCAA+AGG 0.519131 7_3:+79480349 Msa1127830:five_prime_UTR
GTTTCTTTGACGTAGAAGCT+GGG 0.521245 7_3:+79481510 Msa1127830:CDS
TATCATCGGTTGCTGCAGAA+TGG 0.521965 7_3:+79482777 Msa1127830:three_prime_UTR
TTGACTCAAGAAGCTTTGGT+TGG 0.534342 7_3:-79480346 None:intergenic
ACTACCATTGGTATTAGGAC+CGG 0.552266 7_3:-79482210 None:intergenic
CAAACCTGAAAATGAGAAAG+TGG 0.556937 7_3:-79480449 None:intergenic
TAGCAAGTTTGAATTATCAT+CGG 0.557171 7_3:+79482763 Msa1127830:three_prime_UTR
CATTGGCTGCAGGGAATCGG+TGG 0.561137 7_3:+79481958 Msa1127830:intron
TAGATGGTTGATACTTATGC+GGG 0.564926 7_3:+79482675 Msa1127830:exon
TTTGCCATGCTCAAAACTCC+AGG 0.566786 7_3:-79482185 None:intergenic
ATGTGTTGTCTATGGTTCAA+AGG 0.570074 7_3:+79480568 Msa1127830:CDS
GCTTGCCTGTGCACAAAGCA+CGG 0.576315 7_3:-79481601 None:intergenic
AGATTGAAGCAGTTGAGTTG+AGG 0.584496 7_3:-79480420 None:intergenic
CTGAAAATGAGAAAGTGGGT+TGG 0.587157 7_3:-79480444 None:intergenic
CCGCAATTAACGATTCTGCA+AGG 0.599554 7_3:-79482641 None:intergenic
AACTTGCTAACATGATCACT+GGG 0.600066 7_3:-79482749 None:intergenic
TGTGCAGGAGAGAAAGGATA+CGG 0.600737 7_3:+79481713 Msa1127830:intron
CATAAGTATCAACCATCTAT+GGG 0.602479 7_3:-79482671 None:intergenic
CTTCTTGCAGTGAAGCATGT+TGG 0.605444 7_3:+79482161 Msa1127830:intron
ACATGCAAATCATATAATTG+GGG 0.608394 7_3:-79482931 None:intergenic
ACTGTAACCAATTTGTGACA+CGG 0.612206 7_3:-79480598 None:intergenic
TGAATTCTTTGATTATACGA+TGG 0.620498 7_3:-79481754 None:intergenic
GAGAAAGGATACGGTTACAA+AGG 0.621131 7_3:+79481722 Msa1127830:CDS
TTTCTTTGACGTAGAAGCTG+GGG 0.628424 7_3:+79481511 Msa1127830:CDS
TTCTTTGACGTAGAAGCTGG+GGG 0.630560 7_3:+79481512 Msa1127830:CDS
CCTTGCAGAATCGTTAATTG+CGG 0.632875 7_3:+79482641 Msa1127830:CDS
TTGAGTCTCAGGAAACAAGC+AGG 0.634425 7_3:+79482600 Msa1127830:CDS
CAGGGAGGAGACTTCACTGA+GGG 0.643258 7_3:+79481782 Msa1127830:CDS
CTAAACATGGACTAGTCATG+AGG 0.657365 7_3:-79482959 None:intergenic
GCATATGATCGCAGACTCCG+TGG 0.659220 7_3:+79482516 Msa1127830:intron
AATGCCGGTCCTAATACCAA+TGG 0.661326 7_3:+79482206 Msa1127830:CDS
ATAGATGGTTGATACTTATG+CGG 0.663955 7_3:+79482674 Msa1127830:exon
TTGATGGAATGGATGTTGTG+AGG 0.678873 7_3:+79482573 Msa1127830:CDS
GAAACTTTAGAAACTAAACA+TGG 0.682882 7_3:-79482972 None:intergenic
AAACCTGAAAATGAGAAAGT+GGG 0.705584 7_3:-79480448 None:intergenic
TCTTGCTCCAAATTGTTGCG+TGG 0.716266 7_3:-79480664 None:intergenic
ACATGTCGATTGTCTAACCA+CGG 0.718954 7_3:-79482533 None:intergenic
AAAGAATTCATGATTCAGGG+AGG 0.735053 7_3:+79481767 Msa1127830:CDS
TCAGGGAGGAGACTTCACTG+AGG 0.753671 7_3:+79481781 Msa1127830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAATATATATTATTGA+CGG - chr7_3:79480947-79480966 None:intergenic 10.0%
!!! AAATGAAAAACTTACATTTT+CGG - chr7_3:79480733-79480752 None:intergenic 15.0%
!!! AAAATGTAAGTTTTTCATTT+TGG + chr7_3:79480733-79480752 Msa1127830:intron 15.0%
!! ATAAAAAAATCATTTCAGAT+AGG - chr7_3:79481276-79481295 None:intergenic 15.0%
!!! GTGTTGAAAATAAATTTTTT+AGG - chr7_3:79482142-79482161 None:intergenic 15.0%
!! GTTATATTTGAATATTAGAT+TGG + chr7_3:79482422-79482441 Msa1127830:intron 15.0%
!! GATTAATGAACAAAAACAAT+TGG - chr7_3:79480504-79480523 None:intergenic 20.0%
!!! AATGTTTGTTTGTTTTTTTC+AGG + chr7_3:79480530-79480549 Msa1127830:intron 20.0%
!!! ATGTTTGTTTGTTTTTTTCA+GGG + chr7_3:79480531-79480550 Msa1127830:intron 20.0%
!!! AAATGAGTAAATAGTCATTT+TGG + chr7_3:79480889-79480908 Msa1127830:intron 20.0%
!!! TACTTACTACTGTAATTTTA+AGG + chr7_3:79481211-79481230 Msa1127830:intron 20.0%
!!! ATGGTTTTATTACTGTTATT+AGG + chr7_3:79481454-79481473 Msa1127830:intron 20.0%
!!! TAACATAGCATTTTAAAGTT+TGG + chr7_3:79481678-79481697 Msa1127830:intron 20.0%
!! CATAGAAACAAATATAACAA+AGG - chr7_3:79481856-79481875 None:intergenic 20.0%
!!! TTAATTACACTGTTTTAAAC+TGG - chr7_3:79482116-79482135 None:intergenic 20.0%
!! AATAAAAAATTGACTACCAT+TGG - chr7_3:79482225-79482244 None:intergenic 20.0%
!!! ATTTTTTATTTGCACTGTTA+AGG + chr7_3:79482235-79482254 Msa1127830:CDS 20.0%
!!! AGTTTTGAAGTAAAAATATC+AGG - chr7_3:79482278-79482297 None:intergenic 20.0%
!! AACATGCAAATCATATAATT+GGG - chr7_3:79482935-79482954 None:intergenic 20.0%
!! AAACATGCAAATCATATAAT+TGG - chr7_3:79482936-79482955 None:intergenic 20.0%
! CAAGATCAATTAGATATAGT+AGG + chr7_3:79480682-79480701 Msa1127830:CDS 25.0%
!!! GTTTTAAAACGAGATTGTTA+TGG - chr7_3:79480851-79480870 None:intergenic 25.0%
! GTCCATAAAATTACTAACAA+AGG + chr7_3:79481074-79481093 Msa1127830:intron 25.0%
!! GTCCTTTGTTAGTAATTTTA+TGG - chr7_3:79481079-79481098 None:intergenic 25.0%
! TTGTTAATCACAAAAATCGT+TGG + chr7_3:79481374-79481393 Msa1127830:intron 25.0%
! TGAATTCTTTGATTATACGA+TGG - chr7_3:79481757-79481776 None:intergenic 25.0%
! AATCAAAGAATTCATGATTC+AGG + chr7_3:79481763-79481782 Msa1127830:CDS 25.0%
! ATCAAAGAATTCATGATTCA+GGG + chr7_3:79481764-79481783 Msa1127830:CDS 25.0%
!!! TGGTTTTTAAAATTTCTCCT+TGG + chr7_3:79482082-79482101 Msa1127830:intron 25.0%
! GCTTAAAAATCAATAATCAC+TGG + chr7_3:79482339-79482358 Msa1127830:intron 25.0%
! AAAAATCAATAATCACTGGT+TGG + chr7_3:79482343-79482362 Msa1127830:intron 25.0%
! TGGTTGTTTATTTACATGAT+TGG + chr7_3:79482363-79482382 Msa1127830:intron 25.0%
! CTTAGCATATACAGAAAATA+AGG - chr7_3:79482456-79482475 None:intergenic 25.0%
! TAGCAAGTTTGAATTATCAT+CGG + chr7_3:79482763-79482782 Msa1127830:three_prime_UTR 25.0%
! ACATGCAAATCATATAATTG+GGG - chr7_3:79482934-79482953 None:intergenic 25.0%
!! GAAACTTTAGAAACTAAACA+TGG - chr7_3:79482975-79482994 None:intergenic 25.0%
AAACCTGAAAATGAGAAAGT+GGG - chr7_3:79480451-79480470 None:intergenic 30.0%
!!! ATTTTCAGGTTTGCACAAAT+GGG + chr7_3:79480459-79480478 Msa1127830:intron 30.0%
!! TAAAATCACATGTTGCTTTG+AGG + chr7_3:79480634-79480653 Msa1127830:CDS 30.0%
AAGGATGTTATGTTATGACA+TGG + chr7_3:79480795-79480814 Msa1127830:intron 30.0%
AGGATGTTATGTTATGACAT+GGG + chr7_3:79480796-79480815 Msa1127830:intron 30.0%
! TTTTGGTCCTTAAATGTTTG+AGG + chr7_3:79480906-79480925 Msa1127830:intron 30.0%
TTTGGTCCTTAAATGTTTGA+GGG + chr7_3:79480907-79480926 Msa1127830:intron 30.0%
GTATCTTTCGTTTGTAACAT+TGG + chr7_3:79480981-79481000 Msa1127830:intron 30.0%
TACTAACAAAGGACACATTT+AGG + chr7_3:79481085-79481104 Msa1127830:intron 30.0%
ACTAACAAAGGACACATTTA+GGG + chr7_3:79481086-79481105 Msa1127830:intron 30.0%
GGACGTTTATTATCTTTACA+TGG + chr7_3:79481435-79481454 Msa1127830:intron 30.0%
TTCTACGTCAAAGAAACATT+TGG - chr7_3:79481507-79481526 None:intergenic 30.0%
! CGGAAATTTTCAACTGTTTT+AGG - chr7_3:79481584-79481603 None:intergenic 30.0%
! ATCAAAGGTGCAGAAAAATA+TGG - chr7_3:79481629-79481648 None:intergenic 30.0%
CACATTCAAAAAAGTAATCC+AGG - chr7_3:79481658-79481677 None:intergenic 30.0%
TTCTTTGATTATACGATGGA+AGG - chr7_3:79481753-79481772 None:intergenic 30.0%
CCTTCATTGAAACAAATACA+TGG - chr7_3:79481905-79481924 None:intergenic 30.0%
CCATGTATTTGTTTCAATGA+AGG + chr7_3:79481902-79481921 Msa1127830:intron 30.0%
!! CTAGATTTTTAGATAGTGCT+TGG + chr7_3:79482062-79482081 Msa1127830:intron 30.0%
TTAAACTGGAATTAAAGCCA+AGG - chr7_3:79482102-79482121 None:intergenic 30.0%
AATTGACTACCATTGGTATT+AGG - chr7_3:79482218-79482237 None:intergenic 30.0%
CATAAGTATCAACCATCTAT+GGG - chr7_3:79482674-79482693 None:intergenic 30.0%
! ATAGATGGTTGATACTTATG+CGG + chr7_3:79482674-79482693 Msa1127830:exon 30.0%
GAGTGAAAATTGTACTCAAA+CGG - chr7_3:79482717-79482736 None:intergenic 30.0%
AACCATTTCTTGTTGCAGTT+AGG + chr7_3:79480382-79480401 Msa1127830:five_prime_UTR 35.0%
! TGAAAATGAGAAAGTGGGTT+GGG - chr7_3:79480446-79480465 None:intergenic 35.0%
CAAACCTGAAAATGAGAAAG+TGG - chr7_3:79480452-79480471 None:intergenic 35.0%
!!! CATTTTCAGGTTTGCACAAA+TGG + chr7_3:79480458-79480477 Msa1127830:intron 35.0%
!!! TTTTCAGGTTTGCACAAATG+GGG + chr7_3:79480460-79480479 Msa1127830:intron 35.0%
ATGTGTTGTCTATGGTTCAA+AGG + chr7_3:79480568-79480587 Msa1127830:CDS 35.0%
ACTGTAACCAATTTGTGACA+CGG - chr7_3:79480601-79480620 None:intergenic 35.0%
GTTAGTACAATAATTGTCCC+TGG + chr7_3:79480761-79480780 Msa1127830:intron 35.0%
TTGGTCCTTAAATGTTTGAG+GGG + chr7_3:79480908-79480927 Msa1127830:intron 35.0%
ACTTTAATGCCTCACACATT+TGG + chr7_3:79481140-79481159 Msa1127830:intron 35.0%
CTTTAATGCCTCACACATTT+GGG + chr7_3:79481141-79481160 Msa1127830:intron 35.0%
!! ATTTTGATCCCAAATGTGTG+AGG - chr7_3:79481152-79481171 None:intergenic 35.0%
CTGTGTTGTGATTAAGATGT+TGG + chr7_3:79481414-79481433 Msa1127830:intron 35.0%
! GAAACATTTGGTAGTCACTT+TGG - chr7_3:79481495-79481514 None:intergenic 35.0%
TAATCCAGGTACAAGATCAA+AGG - chr7_3:79481644-79481663 None:intergenic 35.0%
AAAGAATTCATGATTCAGGG+AGG + chr7_3:79481767-79481786 Msa1127830:CDS 35.0%
TGAAACAAATACATGGCAAG+TGG - chr7_3:79481898-79481917 None:intergenic 35.0%
CACTCAAAATGTGTTTCCAT+TGG + chr7_3:79481941-79481960 Msa1127830:intron 35.0%
GTGTTTGGACATGTTATTGA+TGG + chr7_3:79482557-79482576 Msa1127830:CDS 35.0%
TGGACATGTTATTGATGGAA+TGG + chr7_3:79482562-79482581 Msa1127830:CDS 35.0%
GCATAAGTATCAACCATCTA+TGG - chr7_3:79482675-79482694 None:intergenic 35.0%
! TAGATGGTTGATACTTATGC+GGG + chr7_3:79482675-79482694 Msa1127830:exon 35.0%
!! AACTTGCTAACATGATCACT+GGG - chr7_3:79482752-79482771 None:intergenic 35.0%
!! AAACTTGCTAACATGATCAC+TGG - chr7_3:79482753-79482772 None:intergenic 35.0%
! TTGACTCAAGAAGCTTTGGT+TGG - chr7_3:79480349-79480368 None:intergenic 40.0%
ACCAAAGCTTCTTGAGTCAA+AGG + chr7_3:79480349-79480368 Msa1127830:five_prime_UTR 40.0%
ACCTTTGACTCAAGAAGCTT+TGG - chr7_3:79480353-79480372 None:intergenic 40.0%
CACCTAACTGCAACAAGAAA+TGG - chr7_3:79480387-79480406 None:intergenic 40.0%
TTCTTGTTGCAGTTAGGTGA+TGG + chr7_3:79480388-79480407 Msa1127830:exon 40.0%
! AGATTGAAGCAGTTGAGTTG+AGG - chr7_3:79480423-79480442 None:intergenic 40.0%
CTGAAAATGAGAAAGTGGGT+TGG - chr7_3:79480447-79480466 None:intergenic 40.0%
! CAACCCACTTTCTCATTTTC+AGG + chr7_3:79480445-79480464 Msa1127830:CDS 40.0%
! GTTTGCACAAATGGGGTTTT+GGG + chr7_3:79480467-79480486 Msa1127830:intron 40.0%
TAGCCAAGATGTGTTGTCTA+TGG + chr7_3:79480560-79480579 Msa1127830:CDS 40.0%
GAACCATAGACAACACATCT+TGG - chr7_3:79480566-79480585 None:intergenic 40.0%
TCACATACCGTGTCACAAAT+TGG + chr7_3:79480591-79480610 Msa1127830:CDS 40.0%
! TTTTCTGCCACGCAACAATT+TGG + chr7_3:79480657-79480676 Msa1127830:CDS 40.0%
ATCCTTCAACAACATCTCCA+GGG - chr7_3:79480781-79480800 None:intergenic 40.0%
GACAACCCCTCAAACATTTA+AGG - chr7_3:79480916-79480935 None:intergenic 40.0%
TGTTTCTTTGACGTAGAAGC+TGG + chr7_3:79481509-79481528 Msa1127830:CDS 40.0%
GTTTCTTTGACGTAGAAGCT+GGG + chr7_3:79481510-79481529 Msa1127830:CDS 40.0%
TTTCTTTGACGTAGAAGCTG+GGG + chr7_3:79481511-79481530 Msa1127830:CDS 40.0%
! ATCTTTGGGCAGAATCGTTT+TGG + chr7_3:79481538-79481557 Msa1127830:CDS 40.0%
! TCTTTGGGCAGAATCGTTTT+GGG + chr7_3:79481539-79481558 Msa1127830:CDS 40.0%
!! AGAATCGTTTTGGGCTTGTT+TGG + chr7_3:79481548-79481567 Msa1127830:CDS 40.0%
TGGCTTCAATAATCTTGTGC+AGG + chr7_3:79481698-79481717 Msa1127830:intron 40.0%
TAATCTTGTGCAGGAGAGAA+AGG + chr7_3:79481707-79481726 Msa1127830:intron 40.0%
GAGAAAGGATACGGTTACAA+AGG + chr7_3:79481722-79481741 Msa1127830:CDS 40.0%
AACATGCAACAGAGACATAC+AGG - chr7_3:79482025-79482044 None:intergenic 40.0%
ACTACCATTGGTATTAGGAC+CGG - chr7_3:79482213-79482232 None:intergenic 40.0%
CATGATTGGAAAGCTCACTA+TGG + chr7_3:79482377-79482396 Msa1127830:intron 40.0%
! ACATGTCGATTGTCTAACCA+CGG - chr7_3:79482536-79482555 None:intergenic 40.0%
TTGATGGAATGGATGTTGTG+AGG + chr7_3:79482573-79482592 Msa1127830:CDS 40.0%
! CGATTCTGCAAGGCTTTTTA+GGG - chr7_3:79482634-79482653 None:intergenic 40.0%
! ACGATTCTGCAAGGCTTTTT+AGG - chr7_3:79482635-79482654 None:intergenic 40.0%
CCTTGCAGAATCGTTAATTG+CGG + chr7_3:79482641-79482660 Msa1127830:CDS 40.0%
!! CTGCAGAATGGATTGTCATT+TGG + chr7_3:79482789-79482808 Msa1127830:three_prime_UTR 40.0%
!! CTAAACATGGACTAGTCATG+AGG - chr7_3:79482962-79482981 None:intergenic 40.0%
! CTCAAGAAGCTTTGGTTGGT+TGG - chr7_3:79480345-79480364 None:intergenic 45.0%
! GGTTTGCACAAATGGGGTTT+TGG + chr7_3:79480466-79480485 Msa1127830:intron 45.0%
TCTTGCTCCAAATTGTTGCG+TGG - chr7_3:79480667-79480686 None:intergenic 45.0%
CATCCTTCAACAACATCTCC+AGG - chr7_3:79480782-79480801 None:intergenic 45.0%
TTCTTTGACGTAGAAGCTGG+GGG + chr7_3:79481512-79481531 Msa1127830:CDS 45.0%
AATTTCCGTGCTTTGTGCAC+AGG + chr7_3:79481596-79481615 Msa1127830:CDS 45.0%
TGCACCTTTGATCTTGTACC+TGG + chr7_3:79481637-79481656 Msa1127830:intron 45.0%
TGTGCAGGAGAGAAAGGATA+CGG + chr7_3:79481713-79481732 Msa1127830:intron 45.0%
! AATGTGTTTCCATTGGCTGC+AGG + chr7_3:79481948-79481967 Msa1127830:intron 45.0%
! ATGTGTTTCCATTGGCTGCA+GGG + chr7_3:79481949-79481968 Msa1127830:intron 45.0%
ATCGGTGGAGCTAGTATCTA+TGG + chr7_3:79481973-79481992 Msa1127830:CDS 45.0%
CTTCTTGCAGTGAAGCATGT+TGG + chr7_3:79482161-79482180 Msa1127830:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - chr7_3:79482188-79482207 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + chr7_3:79482191-79482210 Msa1127830:CDS 45.0%
AATGCCGGTCCTAATACCAA+TGG + chr7_3:79482206-79482225 Msa1127830:CDS 45.0%
TTGGAAAGCTCACTATGGCA+TGG + chr7_3:79482382-79482401 Msa1127830:intron 45.0%
GACAATCGACATGTCGTGTT+TGG + chr7_3:79482542-79482561 Msa1127830:CDS 45.0%
TTGAGTCTCAGGAAACAAGC+AGG + chr7_3:79482600-79482619 Msa1127830:CDS 45.0%
CCGCAATTAACGATTCTGCA+AGG - chr7_3:79482644-79482663 None:intergenic 45.0%
! TATCATCGGTTGCTGCAGAA+TGG + chr7_3:79482777-79482796 Msa1127830:three_prime_UTR 45.0%
GTCCCTGGAGATGTTGTTGA+AGG + chr7_3:79480776-79480795 Msa1127830:intron 50.0%
AGAAGCTGGGGGTCAATCTT+TGG + chr7_3:79481523-79481542 Msa1127830:CDS 50.0%
GAAGCTGGGGGTCAATCTTT+GGG + chr7_3:79481524-79481543 Msa1127830:CDS 50.0%
!! CGTTTTGGGCTTGTTTGGAG+AGG + chr7_3:79481553-79481572 Msa1127830:CDS 50.0%
! TTCCATTGGCTGCAGGGAAT+CGG + chr7_3:79481955-79481974 Msa1127830:intron 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + chr7_3:79482181-79482200 Msa1127830:CDS 50.0%
TGTGAGGACACTTGAGTCTC+AGG + chr7_3:79482589-79482608 Msa1127830:CDS 50.0%
GCTTGCCTGTGCACAAAGCA+CGG - chr7_3:79481604-79481623 None:intergenic 55.0%
TCAGGGAGGAGACTTCACTG+AGG + chr7_3:79481781-79481800 Msa1127830:CDS 55.0%
CAGGGAGGAGACTTCACTGA+GGG + chr7_3:79481782-79481801 Msa1127830:CDS 55.0%
GCAGTGAAGCATGTTGGTCC+TGG + chr7_3:79482167-79482186 Msa1127830:intron 55.0%
GCATATGATCGCAGACTCCG+TGG + chr7_3:79482516-79482535 Msa1127830:intron 55.0%
TGCGGAGAACTGCCCATAGA+TGG + chr7_3:79482659-79482678 Msa1127830:CDS 55.0%
!! CACCGATTCCCTGCAGCCAA+TGG - chr7_3:79481960-79481979 None:intergenic 60.0%
! CATTGGCTGCAGGGAATCGG+TGG + chr7_3:79481958-79481977 Msa1127830:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79480304 79483006 79480304 ID=Msa1127830;Name=Msa1127830
chr7_3 mRNA 79480304 79483006 79480304 ID=Msa1127830-mRNA-1;Parent=Msa1127830;Name=Msa1127830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=103|1|1|1|1|1|7|321|257
chr7_3 exon 79480304 79480466 79480304 ID=Msa1127830-mRNA-1:exon:22469;Parent=Msa1127830-mRNA-1
chr7_3 exon 79480552 79480737 79480552 ID=Msa1127830-mRNA-1:exon:22470;Parent=Msa1127830-mRNA-1
chr7_3 exon 79481476 79481617 79481476 ID=Msa1127830-mRNA-1:exon:22471;Parent=Msa1127830-mRNA-1
chr7_3 exon 79481720 79481808 79481720 ID=Msa1127830-mRNA-1:exon:22472;Parent=Msa1127830-mRNA-1
chr7_3 exon 79481970 79482024 79481970 ID=Msa1127830-mRNA-1:exon:22473;Parent=Msa1127830-mRNA-1
chr7_3 exon 79482171 79482256 79482171 ID=Msa1127830-mRNA-1:exon:22474;Parent=Msa1127830-mRNA-1
chr7_3 exon 79482530 79483006 79482530 ID=Msa1127830-mRNA-1:exon:22475;Parent=Msa1127830-mRNA-1
chr7_3 five_prime_UTR 79480304 79480406 79480304 ID=Msa1127830-mRNA-1:five_prime_utr;Parent=Msa1127830-mRNA-1
chr7_3 CDS 79480407 79480466 79480407 ID=Msa1127830-mRNA-1:cds;Parent=Msa1127830-mRNA-1
chr7_3 CDS 79480552 79480737 79480552 ID=Msa1127830-mRNA-1:cds;Parent=Msa1127830-mRNA-1
chr7_3 CDS 79481476 79481617 79481476 ID=Msa1127830-mRNA-1:cds;Parent=Msa1127830-mRNA-1
chr7_3 CDS 79481720 79481808 79481720 ID=Msa1127830-mRNA-1:cds;Parent=Msa1127830-mRNA-1
chr7_3 CDS 79481970 79482024 79481970 ID=Msa1127830-mRNA-1:cds;Parent=Msa1127830-mRNA-1
chr7_3 CDS 79482171 79482256 79482171 ID=Msa1127830-mRNA-1:cds;Parent=Msa1127830-mRNA-1
chr7_3 CDS 79482530 79482685 79482530 ID=Msa1127830-mRNA-1:cds;Parent=Msa1127830-mRNA-1
chr7_3 three_prime_UTR 79482686 79483006 79482686 ID=Msa1127830-mRNA-1:three_prime_utr;Parent=Msa1127830-mRNA-1
Gene Sequence

>Msa1127830

ATGGCGTTTTCATCCTCAACTCAACTGCTTCAATCTCCCAACCCACTTTCTCATTTTCAGGGTAATTTTAGCCAAGATGTGTTGTCTATGGTTCAAAGGTCACATACCGTGTCACAAATTGGTTACAGTAAATCATTGTCATTAAAATCACATGTTGCTTTGAGGTTTTCTGCCACGCAACAATTTGGAGCAAGATCAATTAGATATAGTAGGAGAATCACATGTGCAGCTGCTGCTTCCGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGACGTAGAAGCTGGGGGTCAATCTTTGGGCAGAATCGTTTTGGGCTTGTTTGGAGAGGTTGCTCCTAAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATACGGTTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAGGGAGGAGACTTCACTGAGGGAAATGGAATCGGTGGAGCTAGTATCTATGGTTCTAGTTTCGAAGATGAGAGTTTTGCCTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTTAAGACTCCGTGGTTAGACAATCGACATGTCGTGTTTGGACATGTTATTGATGGAATGGATGTTGTGAGGACACTTGAGTCTCAGGAAACAAGCAGGTTAGATATCCCTAAAAAGCCTTGCAGAATCGTTAATTGCGGAGAACTGCCCATAGATGGTTGA

Protein sequence

>Msa1127830

MAFSSSTQLLQSPNPLSHFQGNFSQDVLSMVQRSHTVSQIGYSKSLSLKSHVALRFSATQQFGARSIRYSRRITCAAAASENVQELQAKVTTKCFFDVEAGGQSLGRIVLGLFGEVAPKTVENFRALCTGEKGYGYKGCSFHRIIKEFMIQGGDFTEGNGIGGASIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPKKPCRIVNCGELPIDG*