Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445040 | XP_013459201.1 | 80.000 | 250 | 32 | 3 | 1 | 233 | 1 | 249 | 4.16e-132 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445040 | sp|Q8VZU9|DERL1_ARATH | 48.879 | 223 | 93 | 3 | 1 | 206 | 1 | 219 | 7.27e-67 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445040 | A0A072V3Y3 | 80.000 | 250 | 32 | 3 | 1 | 233 | 1 | 249 | 1.99e-132 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0137330 | Msa0445040 | 0.803389 | 3.569250e-49 | -8.615850e-47 |
| Msa0153430 | Msa0445040 | 0.810772 | 9.762853e-51 | -8.615850e-47 |
| Msa0393650 | Msa0445040 | 0.872354 | 3.392790e-67 | -8.615850e-47 |
| Msa0445040 | Msa0488940 | 0.920071 | 2.033789e-87 | -8.615850e-47 |
| Msa0445040 | Msa0668150 | 0.801785 | 7.642725e-49 | -8.615850e-47 |
| Msa0445040 | Msa1029090 | 0.810158 | 1.324895e-50 | -8.615850e-47 |
| Msa0445040 | Msa1048620 | 0.800343 | 1.506700e-48 | -8.615850e-47 |
| Msa0445040 | Msa1107800 | 0.834710 | 2.560454e-56 | -8.615850e-47 |
| Msa0445040 | Msa1121660 | 0.821734 | 3.449276e-53 | -8.615850e-47 |
| Msa0445040 | Msa1156180 | 0.817412 | 3.341824e-52 | -8.615850e-47 |
| Msa0445040 | Msa1195750 | 0.806976 | 6.331545e-50 | -8.615850e-47 |
| Msa0245880 | Msa0445040 | 0.806178 | 9.330313e-50 | -8.615850e-47 |
| Msa0347180 | Msa0445040 | 0.933603 | 1.457747e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445040 | MtrunA17_Chr3g0079071 | 80.000 | 250 | 32 | 3 | 1 | 233 | 1 | 249 | 3.82e-136 | 384 |
| Msa0445040 | MtrunA17_Chr8g0389711 | 51.220 | 246 | 96 | 4 | 1 | 223 | 1 | 245 | 8.01e-77 | 232 |
| Msa0445040 | MtrunA17_Chr2g0288201 | 29.412 | 170 | 99 | 2 | 6 | 154 | 7 | 176 | 1.01e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445040 | AT4G29330.2 | 56.647 | 173 | 63 | 1 | 1 | 161 | 1 | 173 | 5.46e-68 | 209 |
| Msa0445040 | AT4G29330.1 | 48.879 | 223 | 93 | 3 | 1 | 206 | 1 | 219 | 7.39e-68 | 211 |
| Msa0445040 | AT4G04860.1 | 28.824 | 170 | 100 | 2 | 6 | 154 | 7 | 176 | 2.57e-18 | 81.6 |
| Msa0445040 | AT4G21810.1 | 28.824 | 170 | 100 | 2 | 6 | 154 | 7 | 176 | 2.18e-17 | 79.3 |
Find 59 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAAGAATCAACATTTA+TGG | 0.126417 | 3_3:-18778059 | Msa0445040:CDS |
| ATCACAAATTTCTTCTTTCT+TGG | 0.159647 | 3_3:-18778858 | Msa0445040:CDS |
| TCCCTAATGTCTGGCTTTAA+AGG | 0.165815 | 3_3:+18777018 | None:intergenic |
| ATTGCACTGGAGCATTTATT+TGG | 0.195866 | 3_3:+18776376 | None:intergenic |
| TGGCTGCTGTGCCATATTTA+TGG | 0.282477 | 3_3:-18778145 | Msa0445040:CDS |
| TTTAATGTTTCAGATACTTC+TGG | 0.287318 | 3_3:-18779189 | Msa0445040:intron |
| TCACAAAATAGTGGCATATT+GGG | 0.287428 | 3_3:-18776409 | Msa0445040:intron |
| GTCACAAAATAGTGGCATAT+TGG | 0.296001 | 3_3:-18776410 | Msa0445040:intron |
| CTTAGTGTTTAAACGACTTC+AGG | 0.309739 | 3_3:-18779062 | Msa0445040:intron |
| CCTCCAGTGAGCAAGACTTT+TGG | 0.313821 | 3_3:-18779160 | Msa0445040:CDS |
| CTAGCACTGGATTTGATATT+CGG | 0.313829 | 3_3:-18777045 | Msa0445040:CDS |
| TAAATGTTGATTCTTGCATT+TGG | 0.332736 | 3_3:+18778062 | None:intergenic |
| ATCCTTTAAAGCCAGACATT+AGG | 0.341707 | 3_3:-18777020 | Msa0445040:CDS |
| ACAGTGCTTCATCCTCTTGC+TGG | 0.343953 | 3_3:-18776966 | Msa0445040:CDS |
| TCCTTTAAAGCCAGACATTA+GGG | 0.347312 | 3_3:-18777019 | Msa0445040:CDS |
| AGCAAAATATGGTGTTTCAT+TGG | 0.351511 | 3_3:-18778517 | Msa0445040:CDS |
| TTCCCCTCAGCAGCAAAATC+AGG | 0.357984 | 3_3:-18776243 | Msa0445040:CDS |
| ATGAATGGAGACCATAAATA+TGG | 0.359019 | 3_3:+18778134 | None:intergenic |
| AAGAATCAACATTTATGGTT+TGG | 0.373235 | 3_3:-18778054 | Msa0445040:CDS |
| ATATTTATGGTCTCCATTCA+TGG | 0.388255 | 3_3:-18778132 | Msa0445040:CDS |
| TAGACATTATTGAACGAAAT+AGG | 0.391186 | 3_3:+18779821 | None:intergenic |
| ACTGCAAATGGAAATGAAAA+TGG | 0.398146 | 3_3:+18778834 | None:intergenic |
| TTGCACTGGAGCATTTATTT+GGG | 0.424481 | 3_3:+18776377 | None:intergenic |
| TTATGGTTTGGTATCATTGA+AGG | 0.428421 | 3_3:-18778042 | Msa0445040:intron |
| GAATTGTACAGAGCAAAATA+TGG | 0.430905 | 3_3:-18778528 | Msa0445040:intron |
| TCTGCAGTTCTCTTGTCAAA+TGG | 0.435050 | 3_3:+18778486 | None:intergenic |
| ACTAAAGAAATTCCCATGAA+TGG | 0.439121 | 3_3:+18778119 | None:intergenic |
| TATATCTATTGCAGGTTTGG+AGG | 0.439394 | 3_3:-18778884 | Msa0445040:intron |
| ATTATCAGACGAACTGCAAA+TGG | 0.441501 | 3_3:+18778822 | None:intergenic |
| TTGAATATAATTCCAGCTGA+TGG | 0.447371 | 3_3:+18776348 | None:intergenic |
| CTGCAACCATCCCTAATGTC+TGG | 0.469968 | 3_3:+18777009 | None:intergenic |
| CAGACATTAGGGATGGTTGC+AGG | 0.471940 | 3_3:-18777008 | Msa0445040:CDS |
| ACTCCAAAAGTCTTGCTCAC+TGG | 0.489230 | 3_3:+18779157 | None:intergenic |
| GTGCAATCTAATCCATCAGC+TGG | 0.503029 | 3_3:-18776360 | Msa0445040:CDS |
| TTAGAAAGAGATTACTCTGC+TGG | 0.504932 | 3_3:+18779796 | None:intergenic |
| TATTTATGGTCTCCATTCAT+GGG | 0.507960 | 3_3:-18778131 | Msa0445040:CDS |
| TTCTTGCATTTGGAAATTCA+CGG | 0.511989 | 3_3:+18778072 | None:intergenic |
| TCCATGGGCTATGCTAGCAC+TGG | 0.517192 | 3_3:-18777058 | Msa0445040:CDS |
| AACACTATGAAGCACAAGAA+AGG | 0.518292 | 3_3:+18779867 | None:intergenic |
| GGAAGAAGCAACCGTCTTGG+TGG | 0.521063 | 3_3:-18776324 | Msa0445040:CDS |
| TATGGTGTTTCATTGGAAAG+AGG | 0.521644 | 3_3:-18778510 | Msa0445040:CDS |
| GCTGATGGATTAGATTGCAC+TGG | 0.546109 | 3_3:+18776363 | None:intergenic |
| ACAAGAAACACTTCACTCAC+AGG | 0.548618 | 3_3:-18776285 | Msa0445040:CDS |
| GTGCTTCATCCTCTTGCTGG+TGG | 0.558055 | 3_3:-18776963 | Msa0445040:CDS |
| AAAGGAAGAAGCAACCGTCT+TGG | 0.560738 | 3_3:-18776327 | Msa0445040:CDS |
| ATAGTGGCATATTGGGGAGA+AGG | 0.563007 | 3_3:-18776402 | Msa0445040:intron |
| TCAGCTGGAATTATATTCAA+AGG | 0.564072 | 3_3:-18776345 | Msa0445040:CDS |
| TTGAACTTTCCACCAGCAAG+AGG | 0.576756 | 3_3:+18776954 | None:intergenic |
| TCCCCTCAGCAGCAAAATCA+GGG | 0.580967 | 3_3:-18776242 | Msa0445040:CDS |
| AGAAAAGGATACACTAAGAG+AGG | 0.581080 | 3_3:+18776921 | None:intergenic |
| TTGTTTGATTTCCACCAAGA+CGG | 0.581460 | 3_3:+18776313 | None:intergenic |
| TTAAAGCCAGACATTAGGGA+TGG | 0.602509 | 3_3:-18777015 | Msa0445040:CDS |
| TCCAGTGCTAGCATAGCCCA+TGG | 0.608359 | 3_3:+18777057 | None:intergenic |
| CACAAAATAGTGGCATATTG+GGG | 0.612120 | 3_3:-18776408 | Msa0445040:intron |
| GTGCTAGCATAGCCCATGGA+AGG | 0.612546 | 3_3:+18777061 | None:intergenic |
| CCAAAAGTCTTGCTCACTGG+AGG | 0.629915 | 3_3:+18779160 | None:intergenic |
| TCACAGGAAACAAGTGGCAA+TGG | 0.632870 | 3_3:-18776269 | Msa0445040:CDS |
| ATTCATATAATATGCAGCTG+TGG | 0.634214 | 3_3:+18779120 | None:intergenic |
| CTTCACTCACAGGAAACAAG+TGG | 0.654839 | 3_3:-18776275 | Msa0445040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATTTATTAATTTT+CGG | + | chr3_3:18777124-18777143 | None:intergenic | 0.0% |
| !!! | TTTTTAAATTTCAATGTTTA+AGG | + | chr3_3:18777095-18777114 | None:intergenic | 10.0% |
| !!! | ATATTTATTTTCTTTTGTAA+TGG | - | chr3_3:18777550-18777569 | Msa0445040:intron | 10.0% |
| !! | GATTGTTTATAACATTTATA+TGG | - | chr3_3:18776373-18776392 | Msa0445040:CDS | 15.0% |
| !! | ATGCATATATGAAATATAAA+TGG | - | chr3_3:18776413-18776432 | Msa0445040:intron | 15.0% |
| !!! | AATATAATTTTGGTGAAATT+TGG | + | chr3_3:18776484-18776503 | None:intergenic | 15.0% |
| !!! | GCATAATCAAAATATAATTT+TGG | + | chr3_3:18776494-18776513 | None:intergenic | 15.0% |
| !! | TATTAATTTATTATCCATGA+TGG | - | chr3_3:18776738-18776757 | Msa0445040:intron | 15.0% |
| !!! | TTTTTATTTATATCTATTGC+AGG | - | chr3_3:18777219-18777238 | Msa0445040:intron | 15.0% |
| !!! | TTTAACTTTTTTTTTTCAGT+TGG | - | chr3_3:18777867-18777886 | Msa0445040:intron | 15.0% |
| !! | AAATAAAAGGAACAAAAAAA+GGG | + | chr3_3:18777920-18777939 | None:intergenic | 15.0% |
| !! | TAAATAAAAGGAACAAAAAA+AGG | + | chr3_3:18777921-18777940 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr3_3:18778311-18778330 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr3_3:18778310-18778329 | Msa0445040:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr3_3:18778334-18778353 | Msa0445040:intron | 15.0% |
| !! | GCTAAAAAAAAACATAATAA+TGG | + | chr3_3:18778949-18778968 | None:intergenic | 15.0% |
| !! | AAATCATATTCATTTATGAT+TGG | + | chr3_3:18778993-18779012 | None:intergenic | 15.0% |
| !!! | TTAGCTTATATTTTTACAAT+AGG | - | chr3_3:18779579-18779598 | Msa0445040:intron | 15.0% |
| !! | TGCTTATCATATATCTTATA+AGG | - | chr3_3:18776522-18776541 | Msa0445040:intron | 20.0% |
| !! | GCTTATCATATATCTTATAA+GGG | - | chr3_3:18776523-18776542 | Msa0445040:intron | 20.0% |
| !! | AAAAAATATATGGTATAGCA+AGG | + | chr3_3:18776855-18776874 | None:intergenic | 20.0% |
| !!! | AATGTTTAAGGATAAGTTTT+TGG | + | chr3_3:18777083-18777102 | None:intergenic | 20.0% |
| !!! | ATTGTCATTTTGTAAATTTG+AGG | - | chr3_3:18777447-18777466 | Msa0445040:intron | 20.0% |
| !!! | TTGTCATTTTGTAAATTTGA+GGG | - | chr3_3:18777448-18777467 | Msa0445040:intron | 20.0% |
| !! | AATTACTTATTAATCCTAAG+AGG | + | chr3_3:18777765-18777784 | None:intergenic | 20.0% |
| !! | ATTAATAAGTAATTAGTGTC+CGG | - | chr3_3:18777771-18777790 | Msa0445040:intron | 20.0% |
| !! | GGATGAAACTAATAAATAAA+AGG | + | chr3_3:18777933-18777952 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr3_3:18778277-18778296 | Msa0445040:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3_3:18778320-18778339 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3_3:18778397-18778416 | Msa0445040:intron | 20.0% |
| !! | CATTTATATTCTCAAATTGT+TGG | + | chr3_3:18778537-18778556 | None:intergenic | 20.0% |
| !!! | TTGAGAAAATAAAAGTGTAT+TGG | - | chr3_3:18778590-18778609 | Msa0445040:intron | 20.0% |
| !!! | TTTTATCAACTCTTCAATTT+TGG | - | chr3_3:18778711-18778730 | Msa0445040:intron | 20.0% |
| !!! | TTTATCAACTCTTCAATTTT+GGG | - | chr3_3:18778712-18778731 | Msa0445040:intron | 20.0% |
| !! | TCTAATTGAGATATTCAAAT+GGG | + | chr3_3:18778830-18778849 | None:intergenic | 20.0% |
| !! | ATCTAATTGAGATATTCAAA+TGG | + | chr3_3:18778831-18778850 | None:intergenic | 20.0% |
| !! | TTTATGCATTTGAATTAATG+TGG | - | chr3_3:18778880-18778899 | Msa0445040:intron | 20.0% |
| !!! | ATATCATGAATACTTTTTGT+TGG | - | chr3_3:18778921-18778940 | Msa0445040:intron | 20.0% |
| !!! | ATTAATACTTTTTGTTCTGT+AGG | - | chr3_3:18779020-18779039 | Msa0445040:intron | 20.0% |
| !!! | TTAATACTTTTTGTTCTGTA+GGG | - | chr3_3:18779021-18779040 | Msa0445040:intron | 20.0% |
| !! | AAGCTGATATATAATAGAAA+AGG | + | chr3_3:18779208-18779227 | None:intergenic | 20.0% |
| !!! | TGACATTTTGAAATGAAATA+TGG | + | chr3_3:18779292-18779311 | None:intergenic | 20.0% |
| !!! | TTTTTTAATCCTCTGATTTT+CGG | - | chr3_3:18779387-18779406 | Msa0445040:intron | 20.0% |
| !! | AGTTTAACTAATAATTGTTC+TGG | - | chr3_3:18779434-18779453 | Msa0445040:intron | 20.0% |
| ! | TAGACATTATTGAACGAAAT+AGG | + | chr3_3:18776293-18776312 | None:intergenic | 25.0% |
| ! | CATATATGCATTCAACTAAA+CGG | + | chr3_3:18776404-18776423 | None:intergenic | 25.0% |
| ! | TATCTCGGGATAAAAAAATT+CGG | + | chr3_3:18776563-18776582 | None:intergenic | 25.0% |
| ! | AAAAACACATGCTGAAAAAA+AGG | + | chr3_3:18776625-18776644 | None:intergenic | 25.0% |
| ! | TTTAATGTTTCAGATACTTC+TGG | - | chr3_3:18776922-18776941 | Msa0445040:intron | 25.0% |
| !! | TTTTCAGTATTAGTATGCAA+TGG | + | chr3_3:18777152-18777171 | None:intergenic | 25.0% |
| ! | ATTTATATCTATTGCAGGTT+TGG | - | chr3_3:18777224-18777243 | Msa0445040:intron | 25.0% |
| ! | ATCACAAATTTCTTCTTTCT+TGG | - | chr3_3:18777253-18777272 | Msa0445040:intron | 25.0% |
| ! | ATTATGTGATCACAATTTCA+GGG | - | chr3_3:18777419-18777438 | Msa0445040:intron | 25.0% |
| ! | GTTCAAAACTTACAATTTCA+AGG | - | chr3_3:18777478-18777497 | Msa0445040:intron | 25.0% |
| ! | TTTGTTTGGATGTTGATATT+TGG | - | chr3_3:18777649-18777668 | Msa0445040:intron | 25.0% |
| !! | TTTAATTTCAAGTAGTCTGA+TGG | - | chr3_3:18777728-18777747 | Msa0445040:intron | 25.0% |
| ! | TTAATAAGTAATTAGTGTCC+GGG | - | chr3_3:18777772-18777791 | Msa0445040:intron | 25.0% |
| !! | TTTTCATGATTGTCTATGTT+TGG | - | chr3_3:18778014-18778033 | Msa0445040:intron | 25.0% |
| !!! | TAAATGTTGATTCTTGCATT+TGG | + | chr3_3:18778052-18778071 | None:intergenic | 25.0% |
| ! | AATGCAAGAATCAACATTTA+TGG | - | chr3_3:18778052-18778071 | Msa0445040:CDS | 25.0% |
| ! | AAGAATCAACATTTATGGTT+TGG | - | chr3_3:18778057-18778076 | Msa0445040:CDS | 25.0% |
| ! | ATTATCAAAAGAAGAGTCAT+TGG | + | chr3_3:18778107-18778126 | None:intergenic | 25.0% |
| ! | ATGAATGAGCAGATAAAATT+AGG | - | chr3_3:18778503-18778522 | Msa0445040:CDS | 25.0% |
| ! | GCAAATGTGACAATTATTAT+AGG | - | chr3_3:18778651-18778670 | Msa0445040:intron | 25.0% |
| !! | TTATCAACTCTTCAATTTTG+GGG | - | chr3_3:18778713-18778732 | Msa0445040:intron | 25.0% |
| !! | ATGATTGGTTAAAAGCATAA+TGG | + | chr3_3:18778978-18778997 | None:intergenic | 25.0% |
| ! | TATTATATATCAGCTTGCAA+TGG | - | chr3_3:18779212-18779231 | Msa0445040:intron | 25.0% |
| !! | TTTTTAATCCTCTGATTTTC+GGG | - | chr3_3:18779388-18779407 | Msa0445040:intron | 25.0% |
| !!! | TGACTAGTTTACTTAAGTTA+AGG | + | chr3_3:18779685-18779704 | None:intergenic | 25.0% |
| ATCTCGGGATAAAAAAATTC+GGG | + | chr3_3:18776562-18776581 | None:intergenic | 30.0% | |
| TAACAAAGTCGTGAATATCT+CGG | + | chr3_3:18776578-18776597 | None:intergenic | 30.0% | |
| !! | CATGTGTTTTTCAACTAAAG+AGG | - | chr3_3:18776634-18776653 | Msa0445040:intron | 30.0% |
| ATATTGAGACATGCTTAGTA+TGG | - | chr3_3:18776768-18776787 | Msa0445040:intron | 30.0% | |
| ATTCATATAATATGCAGCTG+TGG | + | chr3_3:18776994-18777013 | None:intergenic | 30.0% | |
| GCATGATCAAGAAAACTAAA+CGG | + | chr3_3:18777195-18777214 | None:intergenic | 30.0% | |
| ACTGCAAATGGAAATGAAAA+TGG | + | chr3_3:18777280-18777299 | None:intergenic | 30.0% | |
| TGTGATCACATAATGTTACA+TGG | + | chr3_3:18777413-18777432 | None:intergenic | 30.0% | |
| CATTATGTGATCACAATTTC+AGG | - | chr3_3:18777418-18777437 | Msa0445040:intron | 30.0% | |
| GAATTGTACAGAGCAAAATA+TGG | - | chr3_3:18777583-18777602 | Msa0445040:intron | 30.0% | |
| AGCAAAATATGGTGTTTCAT+TGG | - | chr3_3:18777594-18777613 | Msa0445040:intron | 30.0% | |
| ! | ATTAGTTTCATCCTTCTCTT+AGG | - | chr3_3:18777940-18777959 | Msa0445040:intron | 30.0% |
| ATGAATGGAGACCATAAATA+TGG | + | chr3_3:18777980-18777999 | None:intergenic | 30.0% | |
| ATATTTATGGTCTCCATTCA+TGG | - | chr3_3:18777979-18777998 | Msa0445040:intron | 30.0% | |
| TATTTATGGTCTCCATTCAT+GGG | - | chr3_3:18777980-18777999 | Msa0445040:intron | 30.0% | |
| ACTAAAGAAATTCCCATGAA+TGG | + | chr3_3:18777995-18778014 | None:intergenic | 30.0% | |
| TTCTTGCATTTGGAAATTCA+CGG | + | chr3_3:18778042-18778061 | None:intergenic | 30.0% | |
| !! | TTATGGTTTGGTATCATTGA+AGG | - | chr3_3:18778069-18778088 | Msa0445040:CDS | 30.0% |
| GCTCATTCTCAAAACAAAAA+AGG | + | chr3_3:18778134-18778153 | None:intergenic | 30.0% | |
| CAAATAATTAAGGCTATGTG+AGG | + | chr3_3:18778164-18778183 | None:intergenic | 30.0% | |
| ! | CATAGCCTTAATTATTTGTC+TGG | - | chr3_3:18778166-18778185 | Msa0445040:intron | 30.0% |
| AGAAGCCAGACAAATAATTA+AGG | + | chr3_3:18778174-18778193 | None:intergenic | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr3_3:18778228-18778247 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr3_3:18778229-18778248 | Msa0445040:intron | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | - | chr3_3:18778359-18778378 | Msa0445040:intron | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+GGG | - | chr3_3:18778363-18778382 | Msa0445040:intron | 30.0% |
| GACAATTATTATAGGACTCA+TGG | - | chr3_3:18778659-18778678 | Msa0445040:intron | 30.0% | |
| ! | TATCAACTCTTCAATTTTGG+GGG | - | chr3_3:18778714-18778733 | Msa0445040:intron | 30.0% |
| CAGTTAAGATTATTCCAACT+CGG | - | chr3_3:18778794-18778813 | Msa0445040:intron | 30.0% | |
| GAAATGAAATATGGTAAGTG+TGG | + | chr3_3:18779283-18779302 | None:intergenic | 30.0% | |
| AACTAATAATTGTTCTGGTC+AGG | - | chr3_3:18779439-18779458 | Msa0445040:intron | 30.0% | |
| ACTAATAATTGTTCTGGTCA+GGG | - | chr3_3:18779440-18779459 | Msa0445040:intron | 30.0% | |
| !! | TGCTTGAGTAACACTTTTTA+TGG | + | chr3_3:18779544-18779563 | None:intergenic | 30.0% |
| GTAAACTAGTCACAAAATAG+TGG | - | chr3_3:18779693-18779712 | Msa0445040:intron | 30.0% | |
| TCACAAAATAGTGGCATATT+GGG | - | chr3_3:18779702-18779721 | Msa0445040:intron | 30.0% | |
| TTGAATATAATTCCAGCTGA+TGG | + | chr3_3:18779766-18779785 | None:intergenic | 30.0% | |
| TCAGCTGGAATTATATTCAA+AGG | - | chr3_3:18779766-18779785 | Msa0445040:intron | 30.0% | |
| AACACTATGAAGCACAAGAA+AGG | + | chr3_3:18776247-18776266 | None:intergenic | 35.0% | |
| TTAGAAAGAGATTACTCTGC+TGG | + | chr3_3:18776318-18776337 | None:intergenic | 35.0% | |
| AACAAAGTCGTGAATATCTC+GGG | + | chr3_3:18776577-18776596 | None:intergenic | 35.0% | |
| AAAGGAAAGAAGTGATAGCA+AGG | + | chr3_3:18776607-18776626 | None:intergenic | 35.0% | |
| CAACTAAAGAGGATATCCAA+CGG | - | chr3_3:18776645-18776664 | Msa0445040:intron | 35.0% | |
| TCAATATCTCATAGCCATCA+TGG | + | chr3_3:18776755-18776774 | None:intergenic | 35.0% | |
| CTTAGTGTTTAAACGACTTC+AGG | - | chr3_3:18777049-18777068 | Msa0445040:CDS | 35.0% | |
| TGATCAAGAAAACTAAACGG+TGG | + | chr3_3:18777192-18777211 | None:intergenic | 35.0% | |
| TATATCTATTGCAGGTTTGG+AGG | - | chr3_3:18777227-18777246 | Msa0445040:intron | 35.0% | |
| ATTATCAGACGAACTGCAAA+TGG | + | chr3_3:18777292-18777311 | None:intergenic | 35.0% | |
| GGACTAAAGAGAATGTAACA+TGG | + | chr3_3:18777392-18777411 | None:intergenic | 35.0% | |
| TATGGTGTTTCATTGGAAAG+AGG | - | chr3_3:18777601-18777620 | Msa0445040:intron | 35.0% | |
| ! | AGAGAACTGCAGATTTTGTT+TGG | - | chr3_3:18777635-18777654 | Msa0445040:intron | 35.0% |
| TGGTTAAAAATTCGCCTCTT+AGG | - | chr3_3:18777748-18777767 | Msa0445040:intron | 35.0% | |
| TGAGCTTAACTCAATTGGTA+TGG | + | chr3_3:18777834-18777853 | None:intergenic | 35.0% | |
| ! | GTGTGTAGAGTATTAATTGG+AGG | - | chr3_3:18778362-18778381 | Msa0445040:intron | 35.0% |
| !!! | GACACTCATTTTGAAACTGA+GGG | - | chr3_3:18778467-18778486 | Msa0445040:intron | 35.0% |
| ! | CTAGCACTGGATTTGATATT+CGG | - | chr3_3:18779066-18779085 | Msa0445040:CDS | 35.0% |
| !! | ATCCTTTAAAGCCAGACATT+AGG | - | chr3_3:18779091-18779110 | Msa0445040:CDS | 35.0% |
| !! | TCCTTTAAAGCCAGACATTA+GGG | - | chr3_3:18779092-18779111 | Msa0445040:CDS | 35.0% |
| AGAAAAGGATACACTAAGAG+AGG | + | chr3_3:18779193-18779212 | None:intergenic | 35.0% | |
| GCAACTTGATAGAATCATTG+TGG | + | chr3_3:18779243-18779262 | None:intergenic | 35.0% | |
| ACTTTGAGTGATACTCTTCA+TGG | + | chr3_3:18779346-18779365 | None:intergenic | 35.0% | |
| GTCACAAAATAGTGGCATAT+TGG | - | chr3_3:18779701-18779720 | Msa0445040:intron | 35.0% | |
| CACAAAATAGTGGCATATTG+GGG | - | chr3_3:18779703-18779722 | Msa0445040:intron | 35.0% | |
| ! | TTGCACTGGAGCATTTATTT+GGG | + | chr3_3:18779737-18779756 | None:intergenic | 35.0% |
| ! | ATTGCACTGGAGCATTTATT+TGG | + | chr3_3:18779738-18779757 | None:intergenic | 35.0% |
| ! | TTGTTTGATTTCCACCAAGA+CGG | + | chr3_3:18779801-18779820 | None:intergenic | 35.0% |
| AAAGCAATTCGGGACACTTT+CGG | - | chr3_3:18776671-18776690 | Msa0445040:intron | 40.0% | |
| !! | GAGAGCATAGCACTGTTTTA+TGG | - | chr3_3:18777026-18777045 | Msa0445040:CDS | 40.0% |
| TCTGCAGTTCTCTTGTCAAA+TGG | + | chr3_3:18777628-18777647 | None:intergenic | 40.0% | |
| !!! | ATTTGGTGCACTCTCACTTT+TGG | - | chr3_3:18777666-18777685 | Msa0445040:intron | 40.0% |
| CATAACATATACATGAGCCG+AGG | + | chr3_3:18777805-18777824 | None:intergenic | 40.0% | |
| ACCAATTGAGTTAAGCTCAC+AGG | - | chr3_3:18777835-18777854 | Msa0445040:intron | 40.0% | |
| CCAATTGAGTTAAGCTCACA+GGG | - | chr3_3:18777836-18777855 | Msa0445040:intron | 40.0% | |
| TTCATCCTTCTCTTAGGTGA+TGG | - | chr3_3:18777946-18777965 | Msa0445040:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3_3:18778224-18778243 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTGAAACTG+AGG | - | chr3_3:18778466-18778485 | Msa0445040:intron | 40.0% |
| !! | CTCTTCAATTTTGGGGGAAA+TGG | - | chr3_3:18778720-18778739 | Msa0445040:intron | 40.0% |
| !! | ATTTTGGGGGAAATGGACAT+TGG | - | chr3_3:18778727-18778746 | Msa0445040:intron | 40.0% |
| ! | TGTAGGGTTTTTACCTTCCA+TGG | - | chr3_3:18779037-18779056 | Msa0445040:intron | 40.0% |
| ! | GTAGGGTTTTTACCTTCCAT+GGG | - | chr3_3:18779038-18779057 | Msa0445040:intron | 40.0% |
| !! | TCCCTAATGTCTGGCTTTAA+AGG | + | chr3_3:18779096-18779115 | None:intergenic | 40.0% |
| TTAAAGCCAGACATTAGGGA+TGG | - | chr3_3:18779096-18779115 | Msa0445040:CDS | 40.0% | |
| ACAAGAAACACTTCACTCAC+AGG | - | chr3_3:18779826-18779845 | Msa0445040:exon | 40.0% | |
| TCCAACGGCTGAAAGCAATT+CGG | - | chr3_3:18776660-18776679 | Msa0445040:intron | 45.0% | |
| AAGCAATTCGGGACACTTTC+GGG | - | chr3_3:18776672-18776691 | Msa0445040:intron | 45.0% | |
| ACTCCAAAAGTCTTGCTCAC+TGG | + | chr3_3:18776957-18776976 | None:intergenic | 45.0% | |
| !! | AGTGAGCAAGACTTTTGGAG+TGG | - | chr3_3:18776956-18776975 | Msa0445040:CDS | 45.0% |
| CCCTGTGAGCTTAACTCAAT+TGG | + | chr3_3:18777839-18777858 | None:intergenic | 45.0% | |
| TGGCTGCTGTGCCATATTTA+TGG | - | chr3_3:18777966-18777985 | Msa0445040:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3_3:18778225-18778244 | None:intergenic | 45.0% |
| TGGGTCAAGATTATCCGAGT+TGG | + | chr3_3:18778811-18778830 | None:intergenic | 45.0% | |
| TTGAACTTTCCACCAGCAAG+AGG | + | chr3_3:18779160-18779179 | None:intergenic | 45.0% | |
| TCACTTCTCCCGAAAATCAG+AGG | + | chr3_3:18779399-18779418 | None:intergenic | 45.0% | |
| TTCTGGTCAGGGTTCAAACT+CGG | - | chr3_3:18779451-18779470 | Msa0445040:intron | 45.0% | |
| ATAGTGGCATATTGGGGAGA+AGG | - | chr3_3:18779709-18779728 | Msa0445040:intron | 45.0% | |
| !! | GCTGATGGATTAGATTGCAC+TGG | + | chr3_3:18779751-18779770 | None:intergenic | 45.0% |
| GTGCAATCTAATCCATCAGC+TGG | - | chr3_3:18779751-18779770 | Msa0445040:intron | 45.0% | |
| AAAGGAAGAAGCAACCGTCT+TGG | - | chr3_3:18779784-18779803 | Msa0445040:intron | 45.0% | |
| CTTCACTCACAGGAAACAAG+TGG | - | chr3_3:18779836-18779855 | Msa0445040:five_prime_UTR | 45.0% | |
| TCACAGGAAACAAGTGGCAA+TGG | - | chr3_3:18779842-18779861 | Msa0445040:five_prime_UTR | 45.0% | |
| !! | TTCATATAATAAAAAATATA+TGG | + | chr3_3:18776865-18776884 | None:intergenic | 5.0% |
| CCAACGGCTGAAAGCAATTC+GGG | - | chr3_3:18776661-18776680 | Msa0445040:intron | 50.0% | |
| ACTTTCGGGACAGTGTGCTT+CGG | - | chr3_3:18776686-18776705 | Msa0445040:intron | 50.0% | |
| CCAAAAGTCTTGCTCACTGG+AGG | + | chr3_3:18776954-18776973 | None:intergenic | 50.0% | |
| ! | CCTCCAGTGAGCAAGACTTT+TGG | - | chr3_3:18776951-18776970 | Msa0445040:CDS | 50.0% |
| AGTGTCCGGGATTCAAACCT+CGG | - | chr3_3:18777785-18777804 | Msa0445040:intron | 50.0% | |
| ATGAGCCGAGGTTTGAATCC+CGG | + | chr3_3:18777793-18777812 | None:intergenic | 50.0% | |
| AGCAGCCATCACCTAAGAGA+AGG | + | chr3_3:18777954-18777973 | None:intergenic | 50.0% | |
| CTGCAACCATCCCTAATGTC+TGG | + | chr3_3:18779105-18779124 | None:intergenic | 50.0% | |
| CAGACATTAGGGATGGTTGC+AGG | - | chr3_3:18779103-18779122 | Msa0445040:CDS | 50.0% | |
| ACAGTGCTTCATCCTCTTGC+TGG | - | chr3_3:18779145-18779164 | Msa0445040:CDS | 50.0% | |
| TCTGGTCAGGGTTCAAACTC+GGG | - | chr3_3:18779452-18779471 | Msa0445040:intron | 50.0% | |
| TTCCCCTCAGCAGCAAAATC+AGG | - | chr3_3:18779868-18779887 | Msa0445040:five_prime_UTR | 50.0% | |
| CCCGAATTGCTTTCAGCCGT+TGG | + | chr3_3:18776664-18776683 | None:intergenic | 55.0% | |
| CTTTCGGGACAGTGTGCTTC+GGG | - | chr3_3:18776687-18776706 | Msa0445040:intron | 55.0% | |
| GTGCTAGCATAGCCCATGGA+AGG | + | chr3_3:18779053-18779072 | None:intergenic | 55.0% | |
| ! | TCCATGGGCTATGCTAGCAC+TGG | - | chr3_3:18779053-18779072 | Msa0445040:intron | 55.0% |
| TCCAGTGCTAGCATAGCCCA+TGG | + | chr3_3:18779057-18779076 | None:intergenic | 55.0% | |
| GTGCTTCATCCTCTTGCTGG+TGG | - | chr3_3:18779148-18779167 | Msa0445040:CDS | 55.0% | |
| GGAAGAAGCAACCGTCTTGG+TGG | - | chr3_3:18779787-18779806 | Msa0445040:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 18776242 | 18779891 | 18776242 | ID=Msa0445040;Name=Msa0445040 |
| chr3_3 | mRNA | 18776242 | 18779891 | 18776242 | ID=Msa0445040-mRNA-1;Parent=Msa0445040;Name=Msa0445040-mRNA-1;_AED=0.19;_eAED=0.24;_QI=64|0.66|0.57|1|0.83|0.71|7|0|250 |
| chr3_3 | exon | 18776242 | 18776420 | 18776242 | ID=Msa0445040-mRNA-1:exon:3964;Parent=Msa0445040-mRNA-1 |
| chr3_3 | exon | 18776935 | 18777091 | 18776935 | ID=Msa0445040-mRNA-1:exon:3963;Parent=Msa0445040-mRNA-1 |
| chr3_3 | exon | 18778043 | 18778171 | 18778043 | ID=Msa0445040-mRNA-1:exon:3962;Parent=Msa0445040-mRNA-1 |
| chr3_3 | exon | 18778482 | 18778539 | 18778482 | ID=Msa0445040-mRNA-1:exon:3961;Parent=Msa0445040-mRNA-1 |
| chr3_3 | exon | 18778819 | 18778892 | 18778819 | ID=Msa0445040-mRNA-1:exon:3960;Parent=Msa0445040-mRNA-1 |
| chr3_3 | exon | 18779063 | 18779198 | 18779063 | ID=Msa0445040-mRNA-1:exon:3959;Parent=Msa0445040-mRNA-1 |
| chr3_3 | exon | 18779811 | 18779891 | 18779811 | ID=Msa0445040-mRNA-1:exon:3958;Parent=Msa0445040-mRNA-1 |
| chr3_3 | five_prime_UTR | 18779828 | 18779891 | 18779828 | ID=Msa0445040-mRNA-1:five_prime_utr;Parent=Msa0445040-mRNA-1 |
| chr3_3 | CDS | 18779811 | 18779827 | 18779811 | ID=Msa0445040-mRNA-1:cds;Parent=Msa0445040-mRNA-1 |
| chr3_3 | CDS | 18779063 | 18779198 | 18779063 | ID=Msa0445040-mRNA-1:cds;Parent=Msa0445040-mRNA-1 |
| chr3_3 | CDS | 18778819 | 18778892 | 18778819 | ID=Msa0445040-mRNA-1:cds;Parent=Msa0445040-mRNA-1 |
| chr3_3 | CDS | 18778482 | 18778539 | 18778482 | ID=Msa0445040-mRNA-1:cds;Parent=Msa0445040-mRNA-1 |
| chr3_3 | CDS | 18778043 | 18778171 | 18778043 | ID=Msa0445040-mRNA-1:cds;Parent=Msa0445040-mRNA-1 |
| chr3_3 | CDS | 18776935 | 18777091 | 18776935 | ID=Msa0445040-mRNA-1:cds;Parent=Msa0445040-mRNA-1 |
| chr3_3 | CDS | 18776242 | 18776420 | 18776242 | ID=Msa0445040-mRNA-1:cds;Parent=Msa0445040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
