AlfalfaGEDB | Msa0488940

M. sativa cultivar zhongmu-4 / Msa0488940

KEGG: K13989
GO: -
PFAM: PF04511.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488940	XP_013459201.1	84.815	270	7	4	1	237	1	269	3.19e-155	442

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488940	sp\|Q8VZU9\|DERL1_ARATH	51.570	223	72	3	1	191	1	219	2.46e-71	221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488940	A0A072V3Y3	84.815	270	7	4	1	237	1	269	1.52e-155	442

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040580	Msa0488940	0.803346	3.642838e-49	-8.615850e-47
Msa0245880	Msa0488940	0.811570	6.555029e-51	-8.615850e-47
Msa0274520	Msa0488940	0.801141	1.035783e-48	-8.615850e-47
Msa0313920	Msa0488940	0.800116	1.676185e-48	-8.615850e-47
Msa0347180	Msa0488940	0.955810	1.283928e-113	-8.615850e-47
Msa0393650	Msa0488940	0.843248	1.575050e-58	-8.615850e-47
Msa0445040	Msa0488940	0.920071	2.033789e-87	-8.615850e-47
Msa0465930	Msa0488940	0.808390	3.170407e-50	-8.615850e-47
Msa0488940	Msa0517330	0.815544	8.754795e-52	-8.615850e-47
Msa0488940	Msa0528970	0.811982	5.330072e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488940	MtrunA17_Chr3g0079071	84.815	270	7	4	1	237	1	269	2.93e-159	442
Msa0488940	MtrunA17_Chr8g0389711	53.200	250	70	5	1	208	1	245	8.51e-85	252
Msa0488940	MtrunA17_Chr2g0288201	28.638	213	111	3	6	177	7	219	7.37e-21	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488940	AT4G29330.1	51.570	223	72	3	1	191	1	219	2.50e-72	221
Msa0488940	AT4G29330.2	50.000	210	73	2	1	178	1	210	2.03e-67	207
Msa0488940	AT4G04860.1	27.230	213	114	3	6	177	7	219	7.37e-20	85.5
Msa0488940	AT4G21810.1	27.230	213	114	3	6	177	7	219	1.14e-18	82.4

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Find 55 sgRNAs with CRISPR-Local

Find 589 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAGACATTCTAGGGA+TGG	0.549511	3_4:-9083067	Msa0488940:intron
AAAGGAAGAAGCAACCGTCT+TGG	0.560738	3_4:-9082379	Msa0488940:CDS
AACACTATGAAGCACAAGAA+AGG	0.518292	3_4:+9091701	None:intergenic
AACACTTCACAGGAAACAAG+TGG	0.642467	3_4:-9082331	Msa0488940:CDS
AAGAATCAACATTTATGGTT+TGG	0.373235	3_4:-9090081	Msa0488940:CDS
AATGCAAGAATCAACATTTA+TGG	0.126417	3_4:-9090086	Msa0488940:CDS
ACAGTGCTTCATCCTCTTGC+TGG	0.343953	3_4:-9083018	Msa0488940:CDS
ACTAAAGAAATTCCCATGAA+TGG	0.439121	3_4:+9090146	None:intergenic
ACTCCAAAAGTCTTGCTCAC+TGG	0.489230	3_4:+9091180	None:intergenic
ACTGCAAATGGAAATGAAAA+TGG	0.398146	3_4:+9090857	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTGAGACATGCTTAGTA+TGG	-	chr3_4:9082319-9082338	Msa0488940:CDS	30.0%
ATTCATATAATATGCAGCTG+TGG	+	chr3_4:9082548-9082567	None:intergenic	30.0%
GCATGATCAAGAAAACTAAA+CGG	+	chr3_4:9082749-9082768	None:intergenic	30.0%
ACTGCAAATGGAAATGAAAA+TGG	+	chr3_4:9082834-9082853	None:intergenic	30.0%
TGTGATCACATAATGTTACA+TGG	+	chr3_4:9082967-9082986	None:intergenic	30.0%
CATTATGTGATCACAATTTC+AGG	-	chr3_4:9082972-9082991	Msa0488940:intron	30.0%
GAATTGTACAGAGCAAAATA+TGG	-	chr3_4:9083137-9083156	Msa0488940:intron	30.0%
AGCAAAATATGGTGTTTCAT+TGG	-	chr3_4:9083148-9083167	Msa0488940:intron	30.0%
TGGTTAAAAATTTGCCTCTT+AGG	-	chr3_4:9083302-9083321	Msa0488940:intron	30.0%
ATGAATGGAGACCATAAATA+TGG	+	chr3_4:9083530-9083549	Msa0488950:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	9081985	9091725	9081985	ID=Msa0488940;Name=Msa0488940
chr3_4	mRNA	9081985	9091725	9081985	ID=Msa0488940-mRNA-1;Parent=Msa0488940;Name=Msa0488940-mRNA-1;_AED=0.34;_eAED=0.34;_QI=64\|0.57\|0.5\|1\|0.28\|0.37\|8\|0\|240
chr3_4	exon	9081985	9082004	9081985	ID=Msa0488940-mRNA-1:exon:3020;Parent=Msa0488940-mRNA-1
chr3_4	exon	9082299	9082483	9082299	ID=Msa0488940-mRNA-1:exon:3019;Parent=Msa0488940-mRNA-1
chr3_4	exon	9082985	9083085	9082985	ID=Msa0488940-mRNA-1:exon:3018;Parent=Msa0488940-mRNA-1
chr3_4	exon	9090070	9090198	9090070	ID=Msa0488940-mRNA-1:exon:3017;Parent=Msa0488940-mRNA-1
chr3_4	exon	9090505	9090562	9090505	ID=Msa0488940-mRNA-1:exon:3016;Parent=Msa0488940-mRNA-1
chr3_4	exon	9090842	9090915	9090842	ID=Msa0488940-mRNA-1:exon:3015;Parent=Msa0488940-mRNA-1
chr3_4	exon	9091086	9091221	9091086	ID=Msa0488940-mRNA-1:exon:3014;Parent=Msa0488940-mRNA-1
chr3_4	exon	9091645	9091725	9091645	ID=Msa0488940-mRNA-1:exon:3013;Parent=Msa0488940-mRNA-1
chr3_4	five_prime_UTR	9091662	9091725	9091662	ID=Msa0488940-mRNA-1:five_prime_utr;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9091645	9091661	9091645	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9091086	9091221	9091086	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9090842	9090915	9090842	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9090505	9090562	9090505	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9090070	9090198	9090070	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9082985	9083085	9082985	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9082299	9082483	9082299	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4	CDS	9081985	9082004	9081985	ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1

Gene Sequence

>Msa0488940

ATGTCTACACCAGCAGAATACTTCTGGTCTTTACCTCCAGTGAGCAAGACTTTTGGAGTGGCATGTTTCATGACCACAGCTGCATATTATATGAATCTTTATGATGCAGAGAGCATAGCACTGTTTTATGGCTTAGTGTTTAAACGACTTCAGGTTTGGAGGCTTATCACAAATTTCTTCTTTCTTGGACCATTTTCATTTCCATTTGCAGTTCGTCTGATAATGATAGCAAAATATGGTGTTTCATTGGAAAGAGGTCCATTTGACAAGAGAACTGCAGATTTTGTGATGGCTGCTGTGCCATATTTATGGTCTCCATTCATGGGAATTTCTTTAGTTTTCATGATTGTCTATGTTTGGAGCCGTGAATTTCCAAATGCAAGAATCAACATTTATGGTTTGGTATCATTGAAGCCAGACATTCTAGGGATGGTTGCAGGACACTTATATTACTTCTTAACAGTGCTTCATCCTCTTGCTGGTGGAAAGTTCAAGTTCAATACTCCTCTCTTAGTTCACAAAATAGTGGCATATTGGGGAGAAGGTACCCAAATAAATGCTCCAGTGCAATCTAATCCATCAGCTGGAATTATATTCAAAGGAAGAAGCAACCGTCTTGGTGGAAATCAAACAACAGCAACAAGAAACACTTCACAGGAAACAAGTGGCAATGCTTCTTCCCCTCAGCAGCAAAATCAGGTTAGTGGGTTACATTGTTCT

Protein sequence

>Msa0488940

MSTPAEYFWSLPPVSKTFGVACFMTTAAYYMNLYDAESIALFYGLVFKRLQVWRLITNFFFLGPFSFPFAVRLIMIAKYGVSLERGPFDKRTADFVMAAVPYLWSPFMGISLVFMIVYVWSREFPNARINIYGLVSLKPDILGMVAGHLYYFLTVLHPLAGGKFKFNTPLLVHKIVAYWGEGTQINAPVQSNPSAGIIFKGRSNRLGGNQTTATRNTSQETSGNASSPQQQNQVSGLHCS