AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0488940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0488940 MtrunA17_Chr3g0079071 84.815 270 7 4 1 237 1 269 2.93e-159 442
Msa0488940 MtrunA17_Chr8g0389711 53.200 250 70 5 1 208 1 245 8.51e-85 252
Msa0488940 MtrunA17_Chr2g0288201 28.638 213 111 3 6 177 7 219 7.37e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0488940 AT4G29330.1 51.570 223 72 3 1 191 1 219 2.50e-72 221
Msa0488940 AT4G29330.2 50.000 210 73 2 1 178 1 210 2.03e-67 207
Msa0488940 AT4G04860.1 27.230 213 114 3 6 177 7 219 7.37e-20 85.5
Msa0488940 AT4G21810.1 27.230 213 114 3 6 177 7 219 1.14e-18 82.4

Find 55 sgRNAs with CRISPR-Local

Find 589 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCAAGAATCAACATTTA+TGG 0.126417 3_4:-9090086 Msa0488940:CDS
ATCACAAATTTCTTCTTTCT+TGG 0.159647 3_4:-9090881 Msa0488940:CDS
ATTGCACTGGAGCATTTATT+TGG 0.195866 3_4:+9082428 None:intergenic
CCTTTAAAGCCAGACATTCT+AGG 0.260364 3_4:-9083072 Msa0488940:intron
TGGCTGCTGTGCCATATTTA+TGG 0.282477 3_4:-9090172 Msa0488940:CDS
TTTAATGTTTCAGATACTTC+TGG 0.287318 3_4:-9091212 Msa0488940:intron
TCACAAAATAGTGGCATATT+GGG 0.287428 3_4:-9082461 Msa0488940:CDS
GTCACAAAATAGTGGCATAT+TGG 0.296001 3_4:-9082462 Msa0488940:CDS
CTTAGTGTTTAAACGACTTC+AGG 0.309739 3_4:-9091085 Msa0488940:intron
CCTCCAGTGAGCAAGACTTT+TGG 0.313821 3_4:-9091183 Msa0488940:CDS
TTCCCCTCAGCAGCAAAATC+AGG 0.331770 3_4:-9082299 Msa0488940:CDS
TAAATGTTGATTCTTGCATT+TGG 0.332736 3_4:+9090089 None:intergenic
ACAGTGCTTCATCCTCTTGC+TGG 0.343953 3_4:-9083018 Msa0488940:CDS
AGCAAAATATGGTGTTTCAT+TGG 0.351511 3_4:-9090540 Msa0488940:CDS
ATGAATGGAGACCATAAATA+TGG 0.359019 3_4:+9090161 None:intergenic
AAGAATCAACATTTATGGTT+TGG 0.373235 3_4:-9090081 Msa0488940:CDS
ATATTTATGGTCTCCATTCA+TGG 0.388255 3_4:-9090159 Msa0488940:CDS
TAGACATTATTGAACGAAAT+AGG 0.391186 3_4:+9091655 None:intergenic
ACTGCAAATGGAAATGAAAA+TGG 0.398146 3_4:+9090857 None:intergenic
GACATTCTAGGGATGGTTGC+AGG 0.419213 3_4:-9083060 Msa0488940:CDS
TTGCACTGGAGCATTTATTT+GGG 0.424481 3_4:+9082429 None:intergenic
TTATGGTTTGGTATCATTGA+AGG 0.428421 3_4:-9090069 Msa0488940:intron
GAATTGTACAGAGCAAAATA+TGG 0.430905 3_4:-9090551 Msa0488940:intron
TCTGCAGTTCTCTTGTCAAA+TGG 0.435050 3_4:+9090509 None:intergenic
GCAACCATCCCTAGAATGTC+TGG 0.438466 3_4:+9083063 None:intergenic
ACTAAAGAAATTCCCATGAA+TGG 0.439121 3_4:+9090146 None:intergenic
TATATCTATTGCAGGTTTGG+AGG 0.439394 3_4:-9090907 Msa0488940:intron
ATTATCAGACGAACTGCAAA+TGG 0.441501 3_4:+9090845 None:intergenic
TTGAATATAATTCCAGCTGA+TGG 0.447371 3_4:+9082400 None:intergenic
CTTTAAAGCCAGACATTCTA+GGG 0.471915 3_4:-9083071 Msa0488940:intron
ACTCCAAAAGTCTTGCTCAC+TGG 0.489230 3_4:+9091180 None:intergenic
GTGCAATCTAATCCATCAGC+TGG 0.503029 3_4:-9082412 Msa0488940:CDS
TATTTATGGTCTCCATTCAT+GGG 0.507960 3_4:-9090158 Msa0488940:CDS
TTCTTGCATTTGGAAATTCA+CGG 0.511989 3_4:+9090099 None:intergenic
GTAAACTAGTCACAAAATAG+TGG 0.512371 3_4:-9082470 Msa0488940:intron
TGAGAAAGAGATTACTCTGC+TGG 0.513267 3_4:+9091630 None:intergenic
AACACTATGAAGCACAAGAA+AGG 0.518292 3_4:+9091701 None:intergenic
GGAAGAAGCAACCGTCTTGG+TGG 0.521063 3_4:-9082376 Msa0488940:CDS
TATGGTGTTTCATTGGAAAG+AGG 0.521644 3_4:-9090533 Msa0488940:CDS
TTTATGTTAAATCAGTTAGT+GGG 0.545638 3_4:-9081997 Msa0488940:intron
GCTGATGGATTAGATTGCAC+TGG 0.546109 3_4:+9082415 None:intergenic
AAAGCCAGACATTCTAGGGA+TGG 0.549511 3_4:-9083067 Msa0488940:intron
GTGCTTCATCCTCTTGCTGG+TGG 0.558055 3_4:-9083015 Msa0488940:CDS
AAAGGAAGAAGCAACCGTCT+TGG 0.560738 3_4:-9082379 Msa0488940:CDS
ATAGTGGCATATTGGGGAGA+AGG 0.563007 3_4:-9082454 Msa0488940:CDS
TCAGCTGGAATTATATTCAA+AGG 0.564072 3_4:-9082397 Msa0488940:CDS
TTGAACTTTCCACCAGCAAG+AGG 0.576756 3_4:+9083006 None:intergenic
AGCAACAAGAAACACTTCAC+AGG 0.577690 3_4:-9082341 Msa0488940:CDS
TCCCCTCAGCAGCAAAATCA+GGG 0.580967 3_4:-9082298 Msa0488940:intron
AGAAAAGGATACACTAAGAG+AGG 0.581080 3_4:+9082973 None:intergenic
TTGTTTGATTTCCACCAAGA+CGG 0.581460 3_4:+9082365 None:intergenic
CACAAAATAGTGGCATATTG+GGG 0.612120 3_4:-9082460 Msa0488940:CDS
CCAAAAGTCTTGCTCACTGG+AGG 0.629915 3_4:+9091183 None:intergenic
ATTCATATAATATGCAGCTG+TGG 0.634214 3_4:+9091143 None:intergenic
AACACTTCACAGGAAACAAG+TGG 0.642467 3_4:-9082331 Msa0488940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTTATTAATTTT+TGG + chr3_4:9082678-9082697 None:intergenic 0.0%
!!! TTTTTAAATTTCAATGTTTA+AGG + chr3_4:9082649-9082668 None:intergenic 10.0%
!!! ATATTTATTTTCTTTTGTAA+TGG - chr3_4:9083104-9083123 Msa0488940:intron 10.0%
!!! TCTCAATTAATATTTTAATA+TGG - chr3_4:9084411-9084430 Msa0488940:intron 10.0%
!! AACAATTAAATAAAATCAAA+GGG + chr3_4:9084501-9084520 Msa0488950:intron 10.0%
!! AAACAATTAAATAAAATCAA+AGG + chr3_4:9084502-9084521 Msa0488950:intron 10.0%
!! TATGAAATACTTATAATATA+AGG - chr3_4:9085648-9085667 Msa0488940:intron 10.0%
!!! AATATTAAATTAGTTTATCT+AGG + chr3_4:9085705-9085724 Msa0488950:intron 10.0%
!!! AAAACAGAATTTTAAAATTA+TGG - chr3_4:9086225-9086244 Msa0488940:intron 10.0%
!!! ATTTAAAATTGAAATTATGT+AGG + chr3_4:9086921-9086940 Msa0488950:intron 10.0%
!! ATTATATTGTTATAAATCTT+AGG + chr3_4:9086945-9086964 Msa0488950:intron 10.0%
!! TTGCATATATGAAATATAAA+TGG - chr3_4:9082156-9082175 Msa0488940:intron 15.0%
!!! AATATAATTTTGGTGAAATT+TGG + chr3_4:9082227-9082246 None:intergenic 15.0%
!!! GCATAATCAAAATATAATTT+TGG + chr3_4:9082237-9082256 None:intergenic 15.0%
!! TATTAATTTATTATCCATGA+TGG - chr3_4:9082289-9082308 Msa0488940:intron 15.0%
!!! TTTTTATTTATATCTATTGC+AGG - chr3_4:9082773-9082792 Msa0488940:intron 15.0%
!!! ATTTAACTTTTTTTTTCAGT+TGG - chr3_4:9083420-9083439 Msa0488940:intron 15.0%
!! AAATAAAAGGAACAAAAAAA+GGG + chr3_4:9083473-9083492 Msa0488950:five_prime_UTR 15.0%
!! TAAATAAAAGGAACAAAAAA+AGG + chr3_4:9083474-9083493 Msa0488950:five_prime_UTR 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr3_4:9083861-9083880 Msa0488950:three_prime_UTR 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr3_4:9083860-9083879 Msa0488940:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr3_4:9083884-9083903 Msa0488940:intron 15.0%
!! GCTAAAAAAAAACATAATAA+TGG + chr3_4:9084731-9084750 Msa0488950:three_prime_UTR 15.0%
!! AAATCATATTCATTTATGAT+TGG + chr3_4:9084775-9084794 Msa0488950:intron 15.0%
!!! TGTTTTTTTATAACAAAACA+CGG - chr3_4:9084942-9084961 Msa0488940:intron 15.0%
!! AATAAAGTAGTAAGAATTAA+TGG - chr3_4:9085068-9085087 Msa0488940:intron 15.0%
!! AATATTATCATATAGTAGTT+AGG + chr3_4:9085505-9085524 Msa0488950:intron 15.0%
!!! TTAATATTTTTCAAAATGCA+AGG - chr3_4:9085717-9085736 Msa0488940:intron 15.0%
!!! CAAATATTCATTTTGATAAA+TGG + chr3_4:9085745-9085764 Msa0488950:intron 15.0%
!!! TTTTAAATATTTTGAACCAT+GGG + chr3_4:9086506-9086525 Msa0488950:intron 15.0%
!!! TAAAGATATATCATTTGTTA+AGG - chr3_4:9086742-9086761 Msa0488940:intron 15.0%
!!! ATATTCTTAATTTTTCTCTT+CGG + chr3_4:9087752-9087771 None:intergenic 15.0%
!! AATGTATCAAAATAAAACTA+AGG - chr3_4:9088084-9088103 Msa0488940:intron 15.0%
!!! AGTATTTTATATTTTGACAT+TGG + chr3_4:9088398-9088417 None:intergenic 15.0%
!! TGATAGAAAAATCAAATTAT+AGG - chr3_4:9089357-9089376 Msa0488940:intron 15.0%
!!! AGAGAATTTTTTTTTAGAAA+AGG - chr3_4:9090329-9090348 Msa0488940:intron 15.0%
!!! TTAGCTTATATTTTTACAAT+AGG - chr3_4:9091104-9091123 Msa0488940:CDS 15.0%
!! CATATATGCAATAAACTAAA+AGG + chr3_4:9082147-9082166 None:intergenic 20.0%
!! AAAAAATATATGGTATAGCA+AGG + chr3_4:9082409-9082428 None:intergenic 20.0%
!!! AATGTTTAAGGATAAGTTTT+TGG + chr3_4:9082637-9082656 None:intergenic 20.0%
!!! ATTGTCATTTTGTAAATTTG+AGG - chr3_4:9083001-9083020 Msa0488940:CDS 20.0%
!!! TTGTCATTTTGTAAATTTGA+GGG - chr3_4:9083002-9083021 Msa0488940:CDS 20.0%
!! AATTACTTATTAATCCTAAG+AGG + chr3_4:9083319-9083338 Msa0488950:five_prime_UTR 20.0%
!! ATTAATAAGTAATTAGTGTC+CGG - chr3_4:9083325-9083344 Msa0488940:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr3_4:9083870-9083889 Msa0488950:three_prime_UTR 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr3_4:9083947-9083966 Msa0488940:intron 20.0%
!! CATTTATATTCTCAAATTGT+TGG + chr3_4:9084087-9084106 Msa0488950:intron 20.0%
!!! TTGAGAAAATAAAAGTGTAT+TGG - chr3_4:9084140-9084159 Msa0488940:intron 20.0%
!!! TTTTATCAACTCTTCAATTT+TGG - chr3_4:9084262-9084281 Msa0488940:intron 20.0%
!!! TTTATCAACTCTTCAATTTT+GGG - chr3_4:9084263-9084282 Msa0488940:intron 20.0%
!! TCTAATTGAGATATTCAAAT+GGG + chr3_4:9084381-9084400 Msa0488950:intron 20.0%
!! ATCTAATTGAGATATTCAAA+TGG + chr3_4:9084382-9084401 Msa0488950:intron 20.0%
!!! TATTTTAATATGGAAAATGC+TGG - chr3_4:9084421-9084440 Msa0488940:intron 20.0%
!! AAATTCTTGATAAAAAGCTT+CGG - chr3_4:9084614-9084633 Msa0488940:intron 20.0%
!! TTTATGCATTTGAATTAATG+TGG - chr3_4:9084662-9084681 Msa0488940:intron 20.0%
!!! ATATCATGAATACTTTTTGT+TGG - chr3_4:9084703-9084722 Msa0488940:intron 20.0%
!!! ATTAATACTTTTTGTTCTGT+AGG - chr3_4:9084802-9084821 Msa0488940:intron 20.0%
!!! TTAATACTTTTTGTTCTGTA+GGG - chr3_4:9084803-9084822 Msa0488940:intron 20.0%
!! ATGAAATGTTGTAATTTGAT+AGG + chr3_4:9085306-9085325 Msa0488950:intron 20.0%
!! TCACATAATAAACTATAGTT+GGG + chr3_4:9085408-9085427 Msa0488950:intron 20.0%
!!! TACGTAAGTTTAAAATTGTT+GGG + chr3_4:9085540-9085559 Msa0488950:intron 20.0%
!!! TACGTAGAATGATTTAATTT+AGG - chr3_4:9085554-9085573 Msa0488940:intron 20.0%
!!! CTCTAAAAAAATTCAGTTAA+TGG - chr3_4:9085678-9085697 Msa0488940:intron 20.0%
!!! AATGAATATTTGTGATCTTT+TGG - chr3_4:9085753-9085772 Msa0488940:intron 20.0%
!!! TTTTAGCAAATTGTTATGTT+TGG + chr3_4:9085827-9085846 Msa0488950:intron 20.0%
!!! ATGATATTTGAGATGAATTT+TGG + chr3_4:9085864-9085883 Msa0488950:intron 20.0%
!!! GTTTTAAATATTTTGAACCA+TGG + chr3_4:9086507-9086526 Msa0488950:intron 20.0%
!!! AAGAAATTAGTAACTTTTCA+TGG - chr3_4:9086607-9086626 Msa0488940:intron 20.0%
!!! TTCAAGTTTTTAAAGATACA+CGG - chr3_4:9086766-9086785 Msa0488940:intron 20.0%
!!! ATAGTTAGTTATATTGGTTT+TGG + chr3_4:9086836-9086855 Msa0488950:intron 20.0%
!! AATTTACTAGCATTCAAATT+CGG + chr3_4:9087485-9087504 Msa0488950:three_prime_UTR 20.0%
!! TCATCAATAAAATTCTTTGT+AGG - chr3_4:9087921-9087940 Msa0488940:intron 20.0%
!!! CAACTTCTAACTTTTTTTTA+AGG + chr3_4:9087960-9087979 None:intergenic 20.0%
!!! TTTTGTAGTTTCATTAACTT+AGG + chr3_4:9088426-9088445 None:intergenic 20.0%
!! CAATTTAGTTGTCAATAATT+AGG - chr3_4:9088561-9088580 Msa0488940:intron 20.0%
!! GTCTACTATTTACATTAAAT+AGG - chr3_4:9088636-9088655 Msa0488940:intron 20.0%
!! TTTGATTATGTTCAAATTCT+AGG + chr3_4:9088689-9088708 None:intergenic 20.0%
!! AGAATTTGAACATAATCAAA+TGG - chr3_4:9088689-9088708 Msa0488940:intron 20.0%
!! AAAGGAAATCTTGAAAAAAA+TGG + chr3_4:9089625-9089644 None:intergenic 20.0%
!!! AAAAACTGATACACTTTTTT+AGG + chr3_4:9090358-9090377 None:intergenic 20.0%
!! TGTGAAAGAAAATGTTTATT+GGG - chr3_4:9090457-9090476 Msa0488940:intron 20.0%
!! ATCAAAATAGATTCATCTAA+CGG - chr3_4:9090500-9090519 Msa0488940:intron 20.0%
!! GATTAGATATAAAGGATATT+CGG - chr3_4:9090589-9090608 Msa0488940:intron 20.0%
!! AAGCTGATATATAATAGAAA+AGG + chr3_4:9090733-9090752 None:intergenic 20.0%
!!! TGACATTTTGAAATGAAATA+TGG + chr3_4:9090817-9090836 None:intergenic 20.0%
!!! TTTTTTAATCCTCTGATTTT+CGG - chr3_4:9090912-9090931 Msa0488940:intron 20.0%
!! AGTTTAACTAATAATTGTTC+TGG - chr3_4:9090959-9090978 Msa0488940:intron 20.0%
!!! TTTTATGTTAAATCAGTTAG+TGG - chr3_4:9091690-9091709 Msa0488940:five_prime_UTR 20.0%
!! TTTATGTTAAATCAGTTAGT+GGG - chr3_4:9091691-9091710 Msa0488940:five_prime_UTR 20.0%
! TAGACATTATTGAACGAAAT+AGG + chr3_4:9082036-9082055 None:intergenic 25.0%
! TTTAATGTTTCAGATACTTC+TGG - chr3_4:9082476-9082495 Msa0488940:intron 25.0%
!! TTTTCAGTATTAGTATGCAA+TGG + chr3_4:9082706-9082725 None:intergenic 25.0%
! ATTTATATCTATTGCAGGTT+TGG - chr3_4:9082778-9082797 Msa0488940:intron 25.0%
! ATCACAAATTTCTTCTTTCT+TGG - chr3_4:9082807-9082826 Msa0488940:intron 25.0%
! ATTATGTGATCACAATTTCA+GGG - chr3_4:9082973-9082992 Msa0488940:intron 25.0%
! GTTCAAAACTTACAATTTCA+AGG - chr3_4:9083032-9083051 Msa0488940:CDS 25.0%
! TTTGTTTGGATGTTGATATT+TGG - chr3_4:9083203-9083222 Msa0488940:intron 25.0%
!! TTTAATTTCAAGTAGTCTGA+TGG - chr3_4:9083282-9083301 Msa0488940:intron 25.0%
! TTAATAAGTAATTAGTGTCC+GGG - chr3_4:9083326-9083345 Msa0488940:intron 25.0%
! GAAGGATGAAACTAAATAAA+AGG + chr3_4:9083486-9083505 Msa0488950:five_prime_UTR 25.0%
!! TTTTCATGATTGTCTATGTT+TGG - chr3_4:9083564-9083583 Msa0488940:intron 25.0%
!!! TAAATGTTGATTCTTGCATT+TGG + chr3_4:9083602-9083621 Msa0488950:exon 25.0%
! AATGCAAGAATCAACATTTA+TGG - chr3_4:9083602-9083621 Msa0488940:intron 25.0%
! AAGAATCAACATTTATGGTT+TGG - chr3_4:9083607-9083626 Msa0488940:intron 25.0%
! ATTATCAAAAGAAGAGTCAT+TGG + chr3_4:9083657-9083676 Msa0488950:CDS 25.0%
! ATGAATGAGCAGATAAAATT+AGG - chr3_4:9084053-9084072 Msa0488940:intron 25.0%
! GCAAATGTGACAATTATTAT+AGG - chr3_4:9084201-9084220 Msa0488940:intron 25.0%
!! TTATCAACTCTTCAATTTTG+GGG - chr3_4:9084264-9084283 Msa0488940:intron 25.0%
!! ACTGCTACTTCAAAAAAATA+TGG - chr3_4:9084527-9084546 Msa0488940:intron 25.0%
!! CTGCTACTTCAAAAAAATAT+GGG - chr3_4:9084528-9084547 Msa0488940:intron 25.0%
! AATTCTTGATAAAAAGCTTC+GGG - chr3_4:9084615-9084634 Msa0488940:intron 25.0%
!! ATGATTGGTTAAAAGCATAA+TGG + chr3_4:9084760-9084779 Msa0488950:three_prime_UTR 25.0%
! TGATGAAATATAAACGACAA+TGG - chr3_4:9084918-9084937 Msa0488940:intron 25.0%
! CACATAATAAACTATAGTTG+GGG + chr3_4:9085407-9085426 Msa0488950:intron 25.0%
! GTCACATAATAAACTATAGT+TGG + chr3_4:9085409-9085428 Msa0488950:intron 25.0%
!! ACGTAAGTTTAAAATTGTTG+GGG + chr3_4:9085539-9085558 Msa0488950:intron 25.0%
!! CTACGTAAGTTTAAAATTGT+TGG + chr3_4:9085541-9085560 Msa0488950:intron 25.0%
! TATCATGTGTTTAAGCTAAT+AGG - chr3_4:9085940-9085959 Msa0488940:intron 25.0%
! ATTGATGTTTAAACTGTTTG+AGG + chr3_4:9086030-9086049 Msa0488950:intron 25.0%
! CAAACAGTTTAAACATCAAT+AGG - chr3_4:9086030-9086049 Msa0488940:intron 25.0%
! AAAAAACAGTACACCAAAAT+GGG - chr3_4:9086137-9086156 Msa0488940:intron 25.0%
!! TATTAGTTTAATGTTTCCCA+TGG - chr3_4:9086487-9086506 Msa0488940:intron 25.0%
!! ACTTTTCATGGTACAATTTT+TGG - chr3_4:9086619-9086638 Msa0488940:intron 25.0%
!!! TCAAGTTTTTAAAGATACAC+GGG - chr3_4:9086767-9086786 Msa0488940:intron 25.0%
!!! ATATTGGTTTTGGATAGTTT+AGG + chr3_4:9086826-9086845 Msa0488950:intron 25.0%
!! TTCATGGATTATGTGATTAA+CGG + chr3_4:9087060-9087079 Msa0488950:intron 25.0%
!!! TTTTTGCTGACTATTTTTCA+TGG + chr3_4:9087076-9087095 Msa0488950:intron 25.0%
! GAAAGAGTGATAAAAAGAAA+AGG - chr3_4:9087161-9087180 Msa0488940:intron 25.0%
! GCGAATCAAAATAAAACAAA+TGG - chr3_4:9087205-9087224 Msa0488940:intron 25.0%
! ATAGTTGTAAAATCATCTCT+TGG + chr3_4:9087607-9087626 Msa0488950:three_prime_UTR 25.0%
!! TTTTATCTTGCACATATACT+TGG - chr3_4:9088037-9088056 Msa0488940:intron 25.0%
! AACAGTGAATTTATTGCATA+TGG + chr3_4:9088122-9088141 None:intergenic 25.0%
! GAAGTTCTACTTAAATATGA+TGG - chr3_4:9088227-9088246 Msa0488940:intron 25.0%
! AAAATACACTTTATACTCAC+CGG - chr3_4:9088302-9088321 Msa0488940:intron 25.0%
!! ATATTTGATTGAAGGTATGT+TGG + chr3_4:9088358-9088377 None:intergenic 25.0%
! TCAAACTGATATTTGATTGA+AGG + chr3_4:9088366-9088385 None:intergenic 25.0%
!!! TATTTTGACATTGGATTCAA+AGG + chr3_4:9088389-9088408 None:intergenic 25.0%
! ACAACTAAATTGTGATAGTT+GGG + chr3_4:9088553-9088572 None:intergenic 25.0%
! TGCAAAGGAGATAAAAAAAA+GGG - chr3_4:9088734-9088753 Msa0488940:intron 25.0%
!! TTTTGACACATTTTTCACTA+CGG + chr3_4:9089119-9089138 None:intergenic 25.0%
!! ATTAGTGGATAGAGTAATTT+AGG - chr3_4:9089178-9089197 Msa0488940:intron 25.0%
!!! TGTTTTTGGAATTTCTAACT+AGG + chr3_4:9089259-9089278 None:intergenic 25.0%
!! GATGTGTTAATTCATGTTTT+TGG + chr3_4:9089273-9089292 None:intergenic 25.0%
! AGTAATATGGAAATAGTCTT+TGG + chr3_4:9089315-9089334 None:intergenic 25.0%
!!! AACTCATTTCTAGAGTAATA+TGG + chr3_4:9089328-9089347 None:intergenic 25.0%
! TATAGGTTAAAGTTCATCAA+AGG - chr3_4:9089374-9089393 Msa0488940:intron 25.0%
!! TTATCCAAAGTTACATTTTC+GGG + chr3_4:9089534-9089553 None:intergenic 25.0%
!! GTTATCCAAAGTTACATTTT+CGG + chr3_4:9089535-9089554 None:intergenic 25.0%
! GAAATCTTGAAAAAAATGGA+CGG + chr3_4:9089621-9089640 None:intergenic 25.0%
! TAGATGCAAACTTAAAGTAA+AGG + chr3_4:9089643-9089662 None:intergenic 25.0%
! AAATGAGCATAGATTCAAAT+GGG - chr3_4:9089728-9089747 Msa0488940:intron 25.0%
!! TTCTCCATAACTATTTGTTA+TGG + chr3_4:9090270-9090289 None:intergenic 25.0%
! TGTTTGAAAATAGTAGCATA+TGG - chr3_4:9090378-9090397 Msa0488940:intron 25.0%
! GTTTGAAAATAGTAGCATAT+GGG - chr3_4:9090379-9090398 Msa0488940:intron 25.0%
! GTGTGAAAGAAAATGTTTAT+TGG - chr3_4:9090456-9090475 Msa0488940:intron 25.0%
! AAATGTTTATTGGGAATAGA+TGG - chr3_4:9090466-9090485 Msa0488940:intron 25.0%
!!! AAACCCTAATCCTAATTTTT+TGG + chr3_4:9090542-9090561 None:intergenic 25.0%
! AAAAAATTAGGATTAGGGTT+TGG - chr3_4:9090541-9090560 Msa0488940:CDS 25.0%
! TTTGCTAGGATTAGATATAA+AGG - chr3_4:9090581-9090600 Msa0488940:intron 25.0%
! TATTATATATCAGCTTGCAA+TGG - chr3_4:9090737-9090756 Msa0488940:intron 25.0%
!! TTTTTAATCCTCTGATTTTC+GGG - chr3_4:9090913-9090932 Msa0488940:intron 25.0%
!!! TGACTAGTTTACTTAAGTTA+AGG + chr3_4:9091210-9091229 None:intergenic 25.0%
ATATTGAGACATGCTTAGTA+TGG - chr3_4:9082319-9082338 Msa0488940:CDS 30.0%
ATTCATATAATATGCAGCTG+TGG + chr3_4:9082548-9082567 None:intergenic 30.0%
GCATGATCAAGAAAACTAAA+CGG + chr3_4:9082749-9082768 None:intergenic 30.0%
ACTGCAAATGGAAATGAAAA+TGG + chr3_4:9082834-9082853 None:intergenic 30.0%
TGTGATCACATAATGTTACA+TGG + chr3_4:9082967-9082986 None:intergenic 30.0%
CATTATGTGATCACAATTTC+AGG - chr3_4:9082972-9082991 Msa0488940:intron 30.0%
GAATTGTACAGAGCAAAATA+TGG - chr3_4:9083137-9083156 Msa0488940:intron 30.0%
AGCAAAATATGGTGTTTCAT+TGG - chr3_4:9083148-9083167 Msa0488940:intron 30.0%
TGGTTAAAAATTTGCCTCTT+AGG - chr3_4:9083302-9083321 Msa0488940:intron 30.0%
! TTTAGTTTCATCCTTCTCTT+AGG - chr3_4:9083490-9083509 Msa0488940:intron 30.0%
ATGAATGGAGACCATAAATA+TGG + chr3_4:9083530-9083549 Msa0488950:five_prime_UTR 30.0%
ATATTTATGGTCTCCATTCA+TGG - chr3_4:9083529-9083548 Msa0488940:intron 30.0%
TATTTATGGTCTCCATTCAT+GGG - chr3_4:9083530-9083549 Msa0488940:intron 30.0%
ACTAAAGAAATTCCCATGAA+TGG + chr3_4:9083545-9083564 Msa0488950:five_prime_UTR 30.0%
TTCTTGCATTTGGAAATTCA+CGG + chr3_4:9083592-9083611 Msa0488950:exon 30.0%
!! TTATGGTTTGGTATCATTGA+AGG - chr3_4:9083619-9083638 Msa0488940:intron 30.0%
GCTCATTCTCAAAACAAAAA+AGG + chr3_4:9083684-9083703 Msa0488950:CDS 30.0%
CAAATAATTAAGGCTATGTG+AGG + chr3_4:9083714-9083733 Msa0488950:CDS 30.0%
! CATAGCCTTAATTATTTGTC+TGG - chr3_4:9083716-9083735 Msa0488940:intron 30.0%
AGAAGCCAGACAAATAATTA+AGG + chr3_4:9083724-9083743 Msa0488950:CDS 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr3_4:9083778-9083797 Msa0488950:CDS 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr3_4:9083779-9083798 Msa0488940:intron 30.0%
! GTAGTGTGTAGAGTATTAAT+TGG - chr3_4:9083909-9083928 Msa0488940:intron 30.0%
! TGTGTAGAGTATTAATTGGA+GGG - chr3_4:9083913-9083932 Msa0488940:intron 30.0%
GACAATTATTATAGGACTCA+TGG - chr3_4:9084209-9084228 Msa0488940:intron 30.0%
! TATCAACTCTTCAATTTTGG+GGG - chr3_4:9084265-9084284 Msa0488940:intron 30.0%
TTCAAATGGGTCAAGATTAT+CGG + chr3_4:9084368-9084387 Msa0488950:intron 30.0%
ATTCTTCGTTCTCAAAATGA+CGG + chr3_4:9085201-9085220 Msa0488950:intron 30.0%
GAAGAATGTCTCTTAAACTA+CGG - chr3_4:9085214-9085233 Msa0488940:intron 30.0%
AAACAATGCTTATGCATCAT+TGG - chr3_4:9085249-9085268 Msa0488940:intron 30.0%
GTAATTTGATAGGTAAAGCA+AGG + chr3_4:9085296-9085315 Msa0488950:intron 30.0%
! CGTAAGTTTAAAATTGTTGG+GGG + chr3_4:9085538-9085557 Msa0488950:intron 30.0%
! GTTACGTATCAAGCATATTT+TGG + chr3_4:9085805-9085824 Msa0488950:intron 30.0%
ACAGTTGACAGAAAGATAAA+TGG - chr3_4:9086081-9086100 Msa0488940:intron 30.0%
CAGTTGACAGAAAGATAAAT+GGG - chr3_4:9086082-9086101 Msa0488940:intron 30.0%
ATAAATGGGCAACAAACAAA+AGG - chr3_4:9086096-9086115 Msa0488940:intron 30.0%
!!! TGTACTGTTTTTTGAACCTT+AGG + chr3_4:9086130-9086149 Msa0488950:intron 30.0%
CAAAAAACAGTACACCAAAA+TGG - chr3_4:9086136-9086155 Msa0488940:intron 30.0%
! CTTTAGACTATTTCCCATTT+TGG + chr3_4:9086153-9086172 Msa0488950:intron 30.0%
ACAAATTGGTGAAACACAAT+TGG + chr3_4:9086565-9086584 Msa0488950:intron 30.0%
AGCAAACTCACAACAATATA+TGG - chr3_4:9086659-9086678 Msa0488940:intron 30.0%
TTTAACGATGCACAAAAGAA+AGG - chr3_4:9086700-9086719 Msa0488940:intron 30.0%
TTAACGATGCACAAAAGAAA+GGG - chr3_4:9086701-9086720 Msa0488940:intron 30.0%
! GTTCTTTGCATACAAGTTTT+TGG + chr3_4:9086804-9086823 Msa0488950:intron 30.0%
ACCAATATAACTAACTATGC+AGG - chr3_4:9086838-9086857 Msa0488940:intron 30.0%
TCCTGCATAGTTAGTTATAT+TGG + chr3_4:9086842-9086861 Msa0488950:intron 30.0%
GGACTTCTCATGTATAAATA+GGG + chr3_4:9087232-9087251 Msa0488950:intron 30.0%
AGGACTTCTCATGTATAAAT+AGG + chr3_4:9087233-9087252 Msa0488950:intron 30.0%
AGTCGATATATTGAAGATGA+TGG + chr3_4:9087808-9087827 None:intergenic 30.0%
! TTGATGATATAGCAAAGCAT+GGG + chr3_4:9087908-9087927 None:intergenic 30.0%
! ATTGATGATATAGCAAAGCA+TGG + chr3_4:9087909-9087928 None:intergenic 30.0%
! GAAGTGTGAATTTTTATTCC+AGG + chr3_4:9088001-9088020 None:intergenic 30.0%
TAAAACCAATACGAAAGTAG+AGG - chr3_4:9088268-9088287 Msa0488940:intron 30.0%
! ATAACTTTTATTAGCACCCA+TGG - chr3_4:9088468-9088487 Msa0488940:intron 30.0%
GTATCGTATATTAGTTCCAT+GGG + chr3_4:9088487-9088506 None:intergenic 30.0%
TGTATCGTATATTAGTTCCA+TGG + chr3_4:9088488-9088507 None:intergenic 30.0%
GACAACTAAATTGTGATAGT+TGG + chr3_4:9088554-9088573 None:intergenic 30.0%
! CAATAATTAGGCATTGCAAT+AGG - chr3_4:9088573-9088592 Msa0488940:intron 30.0%
CTGCAAAGGAGATAAAAAAA+AGG - chr3_4:9088733-9088752 Msa0488940:intron 30.0%
TTTGTAACCCAAAAAGAACA+TGG - chr3_4:9088798-9088817 Msa0488940:intron 30.0%
TTGTAACCCAAAAAGAACAT+GGG - chr3_4:9088799-9088818 Msa0488940:intron 30.0%
TATGTAATTACCTCATTCGT+TGG - chr3_4:9088848-9088867 Msa0488940:intron 30.0%
TTAGAGAAACTAAGTGCAAT+GGG + chr3_4:9088940-9088959 None:intergenic 30.0%
ATTAGAGAAACTAAGTGCAA+TGG + chr3_4:9088941-9088960 None:intergenic 30.0%
GCACTTAGTTTCTCTAATTA+AGG - chr3_4:9088943-9088962 Msa0488940:intron 30.0%
TTCATGGAAGAACAAAAAGA+TGG + chr3_4:9088974-9088993 None:intergenic 30.0%
! TTTGGAATGACTTCATCAAT+TGG - chr3_4:9089043-9089062 Msa0488940:intron 30.0%
! GCATTTTCATTGGGAATTTA+AGG + chr3_4:9089072-9089091 None:intergenic 30.0%
! ATTGTTTTCTTTCTGTCATG+TGG + chr3_4:9089236-9089255 None:intergenic 30.0%
AATATGGAAATAGTCTTTGG+AGG + chr3_4:9089312-9089331 None:intergenic 30.0%
ATCAAAGGATTATATCAAGC+AGG - chr3_4:9089389-9089408 Msa0488940:intron 30.0%
ATGTGGATCAGTTTCTTATA+TGG + chr3_4:9089459-9089478 None:intergenic 30.0%
! TATCCAAAGTTACATTTTCG+GGG + chr3_4:9089533-9089552 None:intergenic 30.0%
CATTTGAATCTATGCTCATT+TGG + chr3_4:9089729-9089748 None:intergenic 30.0%
CAAATGAGCATAGATTCAAA+TGG - chr3_4:9089727-9089746 Msa0488940:intron 30.0%
! AGATGATTTTCGAATCAAAG+TGG - chr3_4:9090194-9090213 Msa0488940:intron 30.0%
AATGAATGGATGTAACAGAT+GGG - chr3_4:9090229-9090248 Msa0488940:intron 30.0%
AGCTCCATAACAAATAGTTA+TGG - chr3_4:9090263-9090282 Msa0488940:intron 30.0%
GAGCCAAAAAATTAGGATTA+GGG - chr3_4:9090536-9090555 Msa0488940:CDS 30.0%
GAAATGAAATATGGTAAGTG+TGG + chr3_4:9090808-9090827 None:intergenic 30.0%
AACTAATAATTGTTCTGGTC+AGG - chr3_4:9090964-9090983 Msa0488940:intron 30.0%
ACTAATAATTGTTCTGGTCA+GGG - chr3_4:9090965-9090984 Msa0488940:intron 30.0%
!! TGCTTGAGTAACACTTTTTA+TGG + chr3_4:9091069-9091088 None:intergenic 30.0%
GTAAACTAGTCACAAAATAG+TGG - chr3_4:9091218-9091237 Msa0488940:intron 30.0%
TCACAAAATAGTGGCATATT+GGG - chr3_4:9091227-9091246 Msa0488940:intron 30.0%
TTGAATATAATTCCAGCTGA+TGG + chr3_4:9091291-9091310 None:intergenic 30.0%
TCAGCTGGAATTATATTCAA+AGG - chr3_4:9091291-9091310 Msa0488940:intron 30.0%
CGTAATAGATGTTTACGATT+TGG - chr3_4:9091475-9091494 Msa0488940:intron 30.0%
GTAGTTGAACTATAATACGA+AGG - chr3_4:9091546-9091565 Msa0488940:intron 30.0%
CAATGTCTTAAACACTAAAC+CGG + chr3_4:9091589-9091608 None:intergenic 30.0%
ATGTAACACACTAACTGATT+TGG + chr3_4:9091660-9091679 None:intergenic 30.0%
AATCAGTTAGTGTGTTACAT+TGG - chr3_4:9091660-9091679 Msa0488940:exon 30.0%
AACACTATGAAGCACAAGAA+AGG + chr3_4:9081990-9082009 None:intergenic 35.0%
TCAATATCTCATAGCCATCA+TGG + chr3_4:9082306-9082325 None:intergenic 35.0%
CTTAGTGTTTAAACGACTTC+AGG - chr3_4:9082603-9082622 Msa0488940:intron 35.0%
TATATCTATTGCAGGTTTGG+AGG - chr3_4:9082781-9082800 Msa0488940:intron 35.0%
ATTATCAGACGAACTGCAAA+TGG + chr3_4:9082846-9082865 None:intergenic 35.0%
GGACTAAAGAGAATGTAACA+TGG + chr3_4:9082946-9082965 None:intergenic 35.0%
TATGGTGTTTCATTGGAAAG+AGG - chr3_4:9083155-9083174 Msa0488940:intron 35.0%
! AGAGAACTGCAGATTTTGTT+TGG - chr3_4:9083189-9083208 Msa0488940:intron 35.0%
TGAGCTTAACTCAATTGGTA+TGG + chr3_4:9083388-9083407 Msa0488950:five_prime_UTR 35.0%
! GTGTGTAGAGTATTAATTGG+AGG - chr3_4:9083912-9083931 Msa0488940:intron 35.0%
!!! GACACTCATTTTGAAACTGA+GGG - chr3_4:9084017-9084036 Msa0488940:intron 35.0%
GTGAAATTTCCAGAATGTGT+TGG - chr3_4:9084464-9084483 Msa0488940:intron 35.0%
TTTATCAAGAATTTGTCCCG+AGG + chr3_4:9084608-9084627 Msa0488950:three_prime_UTR 35.0%
TTAACTATATATGACCCGTG+CGG + chr3_4:9084888-9084907 Msa0488950:intron 35.0%
! ATAAAAGTACGATCAAGACG+CGG - chr3_4:9084985-9085004 Msa0488940:intron 35.0%
AAGTAATACCCAAAGGAACA+AGG + chr3_4:9085113-9085132 Msa0488950:intron 35.0%
TTGTTCCTTTGGGTATTACT+TGG - chr3_4:9085112-9085131 Msa0488940:intron 35.0%
AATATAGATATCCCATTCGC+AGG + chr3_4:9085177-9085196 Msa0488950:intron 35.0%
TAAAGCAAGGCTCATAATCT+GGG + chr3_4:9085283-9085302 Msa0488950:intron 35.0%
GTTGAGAAACTGAACTAATG+GGG + chr3_4:9086261-9086280 Msa0488950:intron 35.0%
GGTTGAGAAACTGAACTAAT+GGG + chr3_4:9086262-9086281 Msa0488950:intron 35.0%
AGGTTGAGAAACTGAACTAA+TGG + chr3_4:9086263-9086282 Msa0488950:intron 35.0%
TTGACTCATTTCATCTTCTG+CGG - chr3_4:9086282-9086301 Msa0488940:intron 35.0%
TGATCTTTCTCCAATCTCTT+CGG - chr3_4:9086314-9086333 Msa0488940:intron 35.0%
!! TTTGGTGTTCAACCAAAACT+GGG + chr3_4:9086428-9086447 Msa0488950:intron 35.0%
! AACACAATTGGAGGTACAAA+GGG + chr3_4:9086553-9086572 Msa0488950:intron 35.0%
! AAACACAATTGGAGGTACAA+AGG + chr3_4:9086554-9086573 Msa0488950:intron 35.0%
AATTGGTGAAACACAATTGG+AGG + chr3_4:9086562-9086581 Msa0488950:intron 35.0%
GTTTCACCAATTTGTGTTAG+CGG - chr3_4:9086570-9086589 Msa0488940:intron 35.0%
AATGATCCGCTAACACAAAT+TGG + chr3_4:9086579-9086598 Msa0488950:intron 35.0%
CAATATATGGTATGAGTCCT+TGG - chr3_4:9086672-9086691 Msa0488940:intron 35.0%
TGCATCGTTAAAATGTTCCA+AGG + chr3_4:9086692-9086711 Msa0488950:intron 35.0%
GAGAAGGAAAGTAATGTATC+AGG - chr3_4:9087005-9087024 Msa0488940:intron 35.0%
! ATGGATTATGTGATTAACGG+AGG + chr3_4:9087057-9087076 Msa0488950:intron 35.0%
AGCAAAAAAAACCCAAACCA+GGG - chr3_4:9087088-9087107 Msa0488940:intron 35.0%
GCAAATGCAAATCCATGAAA+AGG - chr3_4:9087123-9087142 Msa0488940:intron 35.0%
! AACTTCGTTTGACCTTTTCA+TGG + chr3_4:9087138-9087157 Msa0488950:intron 35.0%
ATGAGAAGTCCTAAAGAAGA+GGG - chr3_4:9087241-9087260 Msa0488940:intron 35.0%
TCAAGCAAGCAACAATGAAT+AGG - chr3_4:9087272-9087291 Msa0488940:intron 35.0%
! TTCAATTTCAAGTCTGCCTT+TGG + chr3_4:9087347-9087366 Msa0488950:three_prime_UTR 35.0%
! GACTATTTCTTTGTGGCTAT+CGG + chr3_4:9087428-9087447 Msa0488950:three_prime_UTR 35.0%
AAAGAAATAGTCCCTCACAA+AGG - chr3_4:9087436-9087455 Msa0488940:intron 35.0%
AGACTTTGAATCCTTTGTGA+GGG + chr3_4:9087450-9087469 Msa0488950:three_prime_UTR 35.0%
AAGACTTTGAATCCTTTGTG+AGG + chr3_4:9087451-9087470 Msa0488950:three_prime_UTR 35.0%
ACTAGCATTCAAATTCGGAT+GGG + chr3_4:9087480-9087499 Msa0488950:three_prime_UTR 35.0%
TACTAGCATTCAAATTCGGA+TGG + chr3_4:9087481-9087500 Msa0488950:three_prime_UTR 35.0%
!! TGTATGTCACTTTGATGAGA+AGG + chr3_4:9087852-9087871 None:intergenic 35.0%
TGCAGAATTGTTGTCTTTCT+TGG + chr3_4:9088718-9088737 None:intergenic 35.0%
GAAAGACAACAATTCTGCAA+AGG - chr3_4:9088719-9088738 Msa0488940:intron 35.0%
TGGGTTACAAATGTGTGTTT+CGG + chr3_4:9088789-9088808 None:intergenic 35.0%
TTAATCTTCTCCAACGAATG+AGG + chr3_4:9088861-9088880 None:intergenic 35.0%
TAGAGAAACTAAGTGCAATG+GGG + chr3_4:9088939-9088958 None:intergenic 35.0%
AGAAGTTGTCTTATGGTTCA+TGG + chr3_4:9088990-9089009 None:intergenic 35.0%
TGATGAAGTCATTCCAAAGT+TGG + chr3_4:9089041-9089060 None:intergenic 35.0%
! GTGCAGTTAAAGAGTTGTTT+TGG + chr3_4:9089142-9089161 None:intergenic 35.0%
AACCAAATTAGCAGCATTAG+TGG - chr3_4:9089163-9089182 Msa0488940:intron 35.0%
ATCCACTAATGCTGCTAATT+TGG + chr3_4:9089168-9089187 None:intergenic 35.0%
AAAGGATTATATCAAGCAGG+TGG - chr3_4:9089392-9089411 Msa0488940:intron 35.0%
ATTCCCCGAAAATGTAACTT+TGG - chr3_4:9089527-9089546 Msa0488940:intron 35.0%
TCAATTCAATTTGCAGAGTC+TGG + chr3_4:9089855-9089874 None:intergenic 35.0%
TTTCGAATCAAAGTGGAAGA+AGG - chr3_4:9090201-9090220 Msa0488940:intron 35.0%
GAATGAATGGATGTAACAGA+TGG - chr3_4:9090228-9090247 Msa0488940:intron 35.0%
GAAGATCATAAGAAAGAGAG+AGG - chr3_4:9090287-9090306 Msa0488940:intron 35.0%
ATCATAAGAAAGAGAGAGGT+TGG - chr3_4:9090291-9090310 Msa0488940:intron 35.0%
TCATAAGAAAGAGAGAGGTT+GGG - chr3_4:9090292-9090311 Msa0488940:intron 35.0%
AAAGTGGAGGAGAAGAATAT+TGG - chr3_4:9090434-9090453 Msa0488940:intron 35.0%
! CGATTTGGAGCCAAAAAATT+AGG - chr3_4:9090529-9090548 Msa0488940:CDS 35.0%
GGAGCCAAAAAATTAGGATT+AGG - chr3_4:9090535-9090554 Msa0488940:CDS 35.0%
!! CTTTAAAGCCAGACATTCTA+GGG - chr3_4:9090617-9090636 Msa0488940:intron 35.0%
AGAAAAGGATACACTAAGAG+AGG + chr3_4:9090718-9090737 None:intergenic 35.0%
GCAACTTGATAGAATCATTG+TGG + chr3_4:9090768-9090787 None:intergenic 35.0%
ACTTTGAGTGATACTCTTCA+TGG + chr3_4:9090871-9090890 None:intergenic 35.0%
GTCACAAAATAGTGGCATAT+TGG - chr3_4:9091226-9091245 Msa0488940:intron 35.0%
CACAAAATAGTGGCATATTG+GGG - chr3_4:9091228-9091247 Msa0488940:intron 35.0%
! TTGCACTGGAGCATTTATTT+GGG + chr3_4:9091262-9091281 None:intergenic 35.0%
! ATTGCACTGGAGCATTTATT+TGG + chr3_4:9091263-9091282 None:intergenic 35.0%
! TTGTTTGATTTCCACCAAGA+CGG + chr3_4:9091326-9091345 None:intergenic 35.0%
GGAAGAGCTTATCGTTTAAA+TGG - chr3_4:9091432-9091451 Msa0488940:intron 35.0%
CTACTTTAAACCGTCTGAAA+CGG + chr3_4:9091530-9091549 None:intergenic 35.0%
ACTATAATACGAAGGTCTCA+TGG - chr3_4:9091554-9091573 Msa0488940:intron 35.0%
CTATAATACGAAGGTCTCAT+GGG - chr3_4:9091555-9091574 Msa0488940:intron 35.0%
! CGGTTTAGTGTTTAAGACAT+TGG - chr3_4:9091587-9091606 Msa0488940:intron 35.0%
TGAGAAAGAGATTACTCTGC+TGG + chr3_4:9082061-9082080 None:intergenic 40.0%
!! GAGAGCATAGCACTGTTTTA+TGG - chr3_4:9082580-9082599 Msa0488940:intron 40.0%
TCTGCAGTTCTCTTGTCAAA+TGG + chr3_4:9083182-9083201 None:intergenic 40.0%
!!! ATTTGGTGCACTCTCACTTT+TGG - chr3_4:9083220-9083239 Msa0488940:intron 40.0%
CATAACATATACATGAGCCG+AGG + chr3_4:9083359-9083378 Msa0488950:five_prime_UTR 40.0%
ACCAATTGAGTTAAGCTCAC+AGG - chr3_4:9083389-9083408 Msa0488940:intron 40.0%
CCAATTGAGTTAAGCTCACA+GGG - chr3_4:9083390-9083409 Msa0488940:intron 40.0%
TTCATCCTTCTCTTAGGTGA+TGG - chr3_4:9083496-9083515 Msa0488940:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_4:9083774-9083793 Msa0488950:CDS 40.0%
!!! CGACACTCATTTTGAAACTG+AGG - chr3_4:9084016-9084035 Msa0488940:intron 40.0%
!! CTCTTCAATTTTGGGGGAAA+TGG - chr3_4:9084271-9084290 Msa0488940:intron 40.0%
!! ATTTTGGGGGAAATGGACAT+TGG - chr3_4:9084278-9084297 Msa0488940:intron 40.0%
! CACATTCTGGAAATTTCACG+AGG + chr3_4:9084463-9084482 Msa0488950:intron 40.0%
AGAATGTTGCCAACACATTC+TGG + chr3_4:9084476-9084495 Msa0488950:intron 40.0%
! TGTAGGGTTTTTACCTTCCA+TGG - chr3_4:9084819-9084838 Msa0488940:intron 40.0%
! GTAGGGTTTTTACCTTCCAT+GGG - chr3_4:9084820-9084839 Msa0488940:intron 40.0%
TTCCTTTGGGTATTACTTGG+AGG - chr3_4:9085115-9085134 Msa0488940:intron 40.0%
ATCCTCCAAGTAATACCCAA+AGG + chr3_4:9085120-9085139 Msa0488950:intron 40.0%
GTAAAGCAAGGCTCATAATC+TGG + chr3_4:9085284-9085303 Msa0488950:intron 40.0%
GATGACCATTCACAAACTGA+CGG - chr3_4:9085777-9085796 Msa0488940:intron 40.0%
ATGACCATTCACAAACTGAC+GGG - chr3_4:9085778-9085797 Msa0488940:intron 40.0%
GCAACAAACAAAAGGCTGTA+GGG - chr3_4:9086104-9086123 Msa0488940:intron 40.0%
ATCCAGAACCAACACAGAAT+CGG - chr3_4:9086193-9086212 Msa0488940:intron 40.0%
GCAGAAGATGAAATGAGTCA+AGG + chr3_4:9086283-9086302 Msa0488950:intron 40.0%
GTAGCAAATATGGAGGGAAA+AGG + chr3_4:9086374-9086393 Msa0488950:intron 40.0%
CAAACACCTGGTAGCAAATA+TGG + chr3_4:9086384-9086403 Msa0488950:intron 40.0%
AAAACTGGGAATGATCTGGT+GGG + chr3_4:9086414-9086433 Msa0488950:intron 40.0%
AACCAAAACTGGGAATGATC+TGG + chr3_4:9086418-9086437 Msa0488950:intron 40.0%
!! GTTTGGTGTTCAACCAAAAC+TGG + chr3_4:9086429-9086448 Msa0488950:intron 40.0%
GTTGAACACCAAACTCGATA+AGG - chr3_4:9086435-9086454 Msa0488940:intron 40.0%
! TTCACGAACGTCTAAAGTCA+AGG - chr3_4:9086980-9086999 Msa0488940:intron 40.0%
! GTCTAAAGTCAAGGAAGAGA+AGG - chr3_4:9086989-9087008 Msa0488940:intron 40.0%
TAACGGAGGTTAAACCTGAA+AGG + chr3_4:9087043-9087062 Msa0488950:intron 40.0%
CAGCAAAAAAAACCCAAACC+AGG - chr3_4:9087087-9087106 Msa0488940:intron 40.0%
GCAAAAAAAACCCAAACCAG+GGG - chr3_4:9087089-9087108 Msa0488940:intron 40.0%
AGAATTTAAGCCCCTGGTTT+GGG + chr3_4:9087102-9087121 Msa0488950:intron 40.0%
CATGAGAAGTCCTAAAGAAG+AGG - chr3_4:9087240-9087259 Msa0488940:intron 40.0%
AATCCATGACCCTCTTCTTT+AGG + chr3_4:9087253-9087272 Msa0488950:three_prime_UTR 40.0%
CGACTAAACAGAAACACCAA+AGG - chr3_4:9087328-9087347 Msa0488940:intron 40.0%
TTGAAATTGAAGTAGCAGCG+CGG - chr3_4:9087356-9087375 Msa0488940:intron 40.0%
! TGTGAGGGACTATTTCTTTG+TGG + chr3_4:9087435-9087454 Msa0488950:three_prime_UTR 40.0%
CTTGAATCGTTTCAGTGCAT+TGG + chr3_4:9087509-9087528 Msa0488950:three_prime_UTR 40.0%
AGAGTGAGACTTTGATGAGA+AGG + chr3_4:9087785-9087804 None:intergenic 40.0%
!! TGTCACTTTGATGAGAAGGA+TGG + chr3_4:9087848-9087867 None:intergenic 40.0%
ATGGGTTTGTACATTGTAGG+GGG + chr3_4:9087890-9087909 None:intergenic 40.0%
CATGGGTTTGTACATTGTAG+GGG + chr3_4:9087891-9087910 None:intergenic 40.0%
GCATGGGTTTGTACATTGTA+GGG + chr3_4:9087892-9087911 None:intergenic 40.0%
AGCATGGGTTTGTACATTGT+AGG + chr3_4:9087893-9087912 None:intergenic 40.0%
! GAAGTTGAGATGTGTCATTG+AGG - chr3_4:9087973-9087992 Msa0488940:intron 40.0%
ACGATCCTCTACTTTCGTAT+TGG + chr3_4:9088276-9088295 None:intergenic 40.0%
AATGCATGCTCAAAGACAAC+CGG + chr3_4:9088324-9088343 None:intergenic 40.0%
! ATAGTTGGGCTTTTCTGTTG+TGG + chr3_4:9088539-9088558 None:intergenic 40.0%
TGTGTGTTTCGGTTAAGTTC+TGG + chr3_4:9088778-9088797 None:intergenic 40.0%
TAACCCAAAAAGAACATGGG+TGG - chr3_4:9088802-9088821 Msa0488940:intron 40.0%
! TCACCACCCATGTTCTTTTT+GGG + chr3_4:9088808-9088827 None:intergenic 40.0%
! TTCACCACCCATGTTCTTTT+TGG + chr3_4:9088809-9088828 None:intergenic 40.0%
TGAGGTAATTACATAGCCTC+TGG + chr3_4:9088843-9088862 None:intergenic 40.0%
TAACCCTTTGTGTCTGTGTT+AGG - chr3_4:9088878-9088897 Msa0488940:intron 40.0%
GAACCTAACACAGACACAAA+GGG + chr3_4:9088884-9088903 None:intergenic 40.0%
AATGGGGTAATCTTCTCCAA+CGG + chr3_4:9088923-9088942 None:intergenic 40.0%
CAGGTAGAGAAGTTGTCTTA+TGG + chr3_4:9088997-9089016 None:intergenic 40.0%
GAGACTTTCTTCTCCAACTT+TGG - chr3_4:9089025-9089044 Msa0488940:intron 40.0%
!! GATGTTCGTAGATTTGGTGA+CGG + chr3_4:9089097-9089116 None:intergenic 40.0%
ACTACGGATGTTCGTAGATT+TGG + chr3_4:9089103-9089122 None:intergenic 40.0%
! GTTTTCTTTCTGTCATGTGG+TGG + chr3_4:9089233-9089252 None:intergenic 40.0%
CTGAGACTGATACATAACAG+GGG + chr3_4:9089501-9089520 None:intergenic 40.0%
GCTGAGACTGATACATAACA+GGG + chr3_4:9089502-9089521 None:intergenic 40.0%
AGCTGAGACTGATACATAAC+AGG + chr3_4:9089503-9089522 None:intergenic 40.0%
TTCAATTTGCAGAGTCTGGT+CGG + chr3_4:9089851-9089870 None:intergenic 40.0%
ATAATCCTTCCGATGCAAGA+CGG - chr3_4:9089993-9090012 Msa0488940:intron 40.0%
ACCATAGAAGAGAGCTTCAT+CGG - chr3_4:9090086-9090105 Msa0488940:CDS 40.0%
GGAAGAAGGAGAAGAATGAA+TGG - chr3_4:9090215-9090234 Msa0488940:intron 40.0%
ATGGATGTAACAGATGGGAA+AGG - chr3_4:9090234-9090253 Msa0488940:intron 40.0%
TATGGGAAACCTACAGAAGT+TGG - chr3_4:9090396-9090415 Msa0488940:intron 40.0%
ATGGGAAACCTACAGAAGTT+GGG - chr3_4:9090397-9090416 Msa0488940:intron 40.0%
!! TTGGGAATAGATGGATTGTG+TGG - chr3_4:9090475-9090494 Msa0488940:intron 40.0%
ATCTAACGGCTAGAACGATT+TGG - chr3_4:9090514-9090533 Msa0488940:CDS 40.0%
AGGATTAGGGTTTGGCAAAT+AGG - chr3_4:9090549-9090568 Msa0488940:intron 40.0%
GGATTAGGGTTTGGCAAATA+GGG - chr3_4:9090550-9090569 Msa0488940:intron 40.0%
ATAGGGTAAGCATGTTTGCT+AGG - chr3_4:9090567-9090586 Msa0488940:intron 40.0%
!! CCTAGAATGTCTGGCTTTAA+AGG + chr3_4:9090619-9090638 None:intergenic 40.0%
!! CCTTTAAAGCCAGACATTCT+AGG - chr3_4:9090616-9090635 Msa0488940:intron 40.0%
AGCAACAAGAAACACTTCAC+AGG - chr3_4:9091347-9091366 Msa0488940:intron 40.0%
AACACTTCACAGGAAACAAG+TGG - chr3_4:9091357-9091376 Msa0488940:intron 40.0%
CAGTTTCTTTCCGTTTCAGA+CGG - chr3_4:9091517-9091536 Msa0488940:intron 40.0%
ACTCCAAAAGTCTTGCTCAC+TGG + chr3_4:9082511-9082530 None:intergenic 45.0%
!! AGTGAGCAAGACTTTTGGAG+TGG - chr3_4:9082510-9082529 Msa0488940:intron 45.0%
CCCTGTGAGCTTAACTCAAT+TGG + chr3_4:9083393-9083412 Msa0488950:five_prime_UTR 45.0%
TGGCTGCTGTGCCATATTTA+TGG - chr3_4:9083516-9083535 Msa0488940:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_4:9083775-9083794 Msa0488950:CDS 45.0%
TGGGTCAAGATTATCGGAGT+TGG + chr3_4:9084362-9084381 Msa0488950:intron 45.0%
!!! AACCACGATGCCGTTTTTTC+CGG - chr3_4:9084551-9084570 Msa0488940:intron 45.0%
AATCACAATTCATGCTGGCC+CGG + chr3_4:9084573-9084592 Msa0488950:three_prime_UTR 45.0%
GGACCAATCACAATTCATGC+TGG + chr3_4:9084578-9084597 Msa0488950:three_prime_UTR 45.0%
! TGATTGGTCCAACAAAGCCT+CGG - chr3_4:9084588-9084607 Msa0488940:intron 45.0%
! AATTTGTCCCGAGGCTTTGT+TGG + chr3_4:9084599-9084618 Msa0488950:three_prime_UTR 45.0%
! AACTTCCTGCCTTGTTCCTT+TGG - chr3_4:9085101-9085120 Msa0488940:intron 45.0%
! ACTTCCTGCCTTGTTCCTTT+GGG - chr3_4:9085102-9085121 Msa0488940:intron 45.0%
AATACCCAAAGGAACAAGGC+AGG + chr3_4:9085109-9085128 Msa0488950:intron 45.0%
AGATATCCCATTCGCAGGAA+AGG + chr3_4:9085172-9085191 Msa0488950:intron 45.0%
! AAGGCTCATAATCTGGGATG+AGG + chr3_4:9085277-9085296 Msa0488950:intron 45.0%
TGCTTAGCCTCTACAATCCA+TGG - chr3_4:9085366-9085385 Msa0488940:intron 45.0%
TTAGCCTCTACAATCCATGG+AGG - chr3_4:9085369-9085388 Msa0488940:intron 45.0%
ACAATCCATGGAGGTCCTTA+AGG - chr3_4:9085378-9085397 Msa0488940:intron 45.0%
CTATAGTTGGGGAAGCCTTA+AGG + chr3_4:9085396-9085415 Msa0488950:intron 45.0%
TGACCATTCACAAACTGACG+GGG - chr3_4:9085779-9085798 Msa0488940:intron 45.0%
GGCAACAAACAAAAGGCTGT+AGG - chr3_4:9086103-9086122 Msa0488940:intron 45.0%
TCCAGAACCAACACAGAATC+GGG - chr3_4:9086194-9086213 Msa0488940:intron 45.0%
TCTGATACCCGATTCTGTGT+TGG + chr3_4:9086204-9086223 Msa0488950:intron 45.0%
GAGAAACTGAACTAATGGGG+AGG + chr3_4:9086258-9086277 Msa0488950:intron 45.0%
! TTCCCTCCATATTTGCTACC+AGG - chr3_4:9086375-9086394 Msa0488940:intron 45.0%
CACCTGGTAGCAAATATGGA+GGG + chr3_4:9086380-9086399 Msa0488950:intron 45.0%
ACACCTGGTAGCAAATATGG+AGG + chr3_4:9086381-9086400 Msa0488950:intron 45.0%
CAAAACTGGGAATGATCTGG+TGG + chr3_4:9086415-9086434 Msa0488950:intron 45.0%
! CACCAGATCATTCCCAGTTT+TGG - chr3_4:9086413-9086432 Msa0488940:intron 45.0%
GAACACCAAACTCGATAAGG+TGG - chr3_4:9086438-9086457 Msa0488940:intron 45.0%
! CGATAAGGTGGCTCTGTAAA+TGG - chr3_4:9086450-9086469 Msa0488940:intron 45.0%
GGACTTGTCATTCTCCTTTC+AGG - chr3_4:9087026-9087045 Msa0488940:intron 45.0%
GAGAATTTAAGCCCCTGGTT+TGG + chr3_4:9087103-9087122 Msa0488950:intron 45.0%
TTTGCGAGAATTTAAGCCCC+TGG + chr3_4:9087108-9087127 Msa0488950:intron 45.0%
AGTCCTAAAGAAGAGGGTCA+TGG - chr3_4:9087247-9087266 Msa0488940:intron 45.0%
TGAAATTGAAGTAGCAGCGC+GGG - chr3_4:9087357-9087376 Msa0488940:intron 45.0%
CATGAGCGTGTAGCTATAGT+TGG - chr3_4:9087700-9087719 Msa0488940:intron 45.0%
CACTTTGATGAGAAGGATGG+TGG + chr3_4:9087845-9087864 None:intergenic 45.0%
! AGATGTGTCATTGAGGTTCC+TGG - chr3_4:9087980-9087999 Msa0488940:intron 45.0%
GTGAAAGTGAAAGAGTCCAG+AGG - chr3_4:9088824-9088843 Msa0488940:intron 45.0%
GGAACCTAACACAGACACAA+AGG + chr3_4:9088885-9088904 None:intergenic 45.0%
ATGGGGTAATCTTCTCCAAC+GGG + chr3_4:9088922-9088941 None:intergenic 45.0%
AAGAAAGTCTCTGATGCAGC+AGG + chr3_4:9089016-9089035 None:intergenic 45.0%
!!! GTGACGGAGGCATTTTCATT+GGG + chr3_4:9089081-9089100 None:intergenic 45.0%
GGATTATATCAAGCAGGTGG+TGG - chr3_4:9089395-9089414 Msa0488940:intron 45.0%
! TTATATCAAGCAGGTGGTGG+AGG - chr3_4:9089398-9089417 Msa0488940:intron 45.0%
GACTGATACATAACAGGGGA+AGG + chr3_4:9089497-9089516 None:intergenic 45.0%
ACCAGCAACAGATTCAGTTC+CGG - chr3_4:9089814-9089833 Msa0488940:intron 45.0%
CTCATCGAGATGAGTACGAA+CGG - chr3_4:9089876-9089895 Msa0488940:intron 45.0%
GAGATGAGTACGAACGGTTA+CGG - chr3_4:9089882-9089901 Msa0488940:intron 45.0%
GATTAGATTCCAGTCGTAGC+TGG - chr3_4:9089909-9089928 Msa0488940:intron 45.0%
TCTTCCACATTTCACAACCG+CGG + chr3_4:9089974-9089993 None:intergenic 45.0%
GAGGTGAAGAAGTAACGTTG+CGG - chr3_4:9090049-9090068 Msa0488940:intron 45.0%
TTCATCGGCGAGTTCTTGTT+TGG - chr3_4:9090101-9090120 Msa0488940:CDS 45.0%
! CGAGTTCTTGTTTGGAGAAG+CGG - chr3_4:9090109-9090128 Msa0488940:CDS 45.0%
AGGAGAGAGAGGAATCAGAA+GGG - chr3_4:9090162-9090181 Msa0488940:CDS 45.0%
! AAAGCCAGACATTCTAGGGA+TGG - chr3_4:9090621-9090640 Msa0488940:intron 45.0%
TTGAACTTTCCACCAGCAAG+AGG + chr3_4:9090685-9090704 None:intergenic 45.0%
TCACTTCTCCCGAAAATCAG+AGG + chr3_4:9090924-9090943 None:intergenic 45.0%
TTCTGGTCAGGGTTCAAACT+CGG - chr3_4:9090976-9090995 Msa0488940:intron 45.0%
ATAGTGGCATATTGGGGAGA+AGG - chr3_4:9091234-9091253 Msa0488940:intron 45.0%
!! GCTGATGGATTAGATTGCAC+TGG + chr3_4:9091276-9091295 None:intergenic 45.0%
GTGCAATCTAATCCATCAGC+TGG - chr3_4:9091276-9091295 Msa0488940:intron 45.0%
AAAGGAAGAAGCAACCGTCT+TGG - chr3_4:9091309-9091328 Msa0488940:intron 45.0%
!!! GGTGATGGAATTGCTTTTCG+TGG - chr3_4:9091411-9091430 Msa0488940:intron 45.0%
!! TTCATATAATAAAAAATATA+TGG + chr3_4:9082419-9082438 None:intergenic 5.0%
CCAAAAGTCTTGCTCACTGG+AGG + chr3_4:9082508-9082527 None:intergenic 50.0%
! CCTCCAGTGAGCAAGACTTT+TGG - chr3_4:9082505-9082524 Msa0488940:intron 50.0%
AGTGTCCGGGATTCAAACCT+CGG - chr3_4:9083339-9083358 Msa0488940:intron 50.0%
ATGAGCCGAGGTTTGAATCC+CGG + chr3_4:9083347-9083366 Msa0488950:five_prime_UTR 50.0%
AGCAGCCATCACCTAAGAGA+AGG + chr3_4:9083504-9083523 Msa0488950:five_prime_UTR 50.0%
GGAAAATGCTGGATAACGCG+AGG - chr3_4:9084432-9084451 Msa0488940:intron 50.0%
AAATGCTGGATAACGCGAGG+TGG - chr3_4:9084435-9084454 Msa0488940:intron 50.0%
!!! ACCACGATGCCGTTTTTTCC+GGG - chr3_4:9084552-9084571 Msa0488940:intron 50.0%
TCATGCTGGCCCGGAAAAAA+CGG + chr3_4:9084564-9084583 Msa0488950:three_prime_UTR 50.0%
GGGCCAGCATGAATTGTGAT+TGG - chr3_4:9084572-9084591 Msa0488940:intron 50.0%
! GATTGGTCCAACAAAGCCTC+GGG - chr3_4:9084589-9084608 Msa0488940:intron 50.0%
AAAGTACGATCAAGACGCGG+CGG - chr3_4:9084988-9085007 Msa0488940:intron 50.0%
GCAGGAAAGGTTGTCGTACT+TGG + chr3_4:9085159-9085178 Msa0488950:intron 50.0%
ACGACAACCTTTCCTGCGAA+TGG - chr3_4:9085162-9085181 Msa0488940:intron 50.0%
CGACAACCTTTCCTGCGAAT+GGG - chr3_4:9085163-9085182 Msa0488940:intron 50.0%
! AGGACCTCCATGGATTGTAG+AGG + chr3_4:9085376-9085395 Msa0488950:intron 50.0%
ACAAAAGGCTGTAGGGCCTA+AGG - chr3_4:9086111-9086130 Msa0488940:intron 50.0%
!! ACCCGATTCTGTGTTGGTTC+TGG + chr3_4:9086198-9086217 Msa0488950:intron 50.0%
! ATGCTTGGCACCGAAGAGAT+TGG + chr3_4:9086327-9086346 Msa0488950:intron 50.0%
GCAGAGGATTCTGCTATGCT+TGG + chr3_4:9086342-9086361 Msa0488950:intron 50.0%
GAAAAGGTCTGCTGATGCAG+AGG + chr3_4:9086358-9086377 Msa0488950:intron 50.0%
CAGAGCCACCTTATCGAGTT+TGG + chr3_4:9086446-9086465 Msa0488950:intron 50.0%
GTATGTTATGCTGCGCTGTG+TGG + chr3_4:9087404-9087423 Msa0488950:three_prime_UTR 50.0%
TTGTAGGGGGACTGAGAATG+TGG + chr3_4:9087877-9087896 None:intergenic 50.0%
! GTTGGGCTTTTCTGTTGTGG+TGG + chr3_4:9088536-9088555 None:intergenic 50.0%
CAACGGGTCAGTAACTACGA+GGG + chr3_4:9088906-9088925 None:intergenic 50.0%
!!! GGTGACGGAGGCATTTTCAT+TGG + chr3_4:9089082-9089101 None:intergenic 50.0%
!! GTTCGTAGATTTGGTGACGG+AGG + chr3_4:9089094-9089113 None:intergenic 50.0%
ACAGGGGAAGGTGACAGTTT+CGG + chr3_4:9089485-9089504 None:intergenic 50.0%
GAGTACGAACGGTTACGGAA+TGG - chr3_4:9089887-9089906 Msa0488940:intron 50.0%
GGTTCCGCTTGGATTGCTAT+CGG + chr3_4:9089946-9089965 None:intergenic 50.0%
CATTTCACAACCGCGGAGAA+TGG + chr3_4:9089967-9089986 None:intergenic 50.0%
TTCTCCGCGGTTGTGAAATG+TGG - chr3_4:9089967-9089986 Msa0488940:intron 50.0%
ACTTCTTCACCTCCGTTCTC+CGG + chr3_4:9090042-9090061 None:intergenic 50.0%
GTGAAGAAGTAACGTTGCGG+AGG - chr3_4:9090052-9090071 Msa0488940:intron 50.0%
GCCGATGAAGCTCTCTTCTA+TGG + chr3_4:9090090-9090109 None:intergenic 50.0%
! GTTCTTGTTTGGAGAAGCGG+CGG - chr3_4:9090112-9090131 Msa0488940:CDS 50.0%
! TTCTTGTTTGGAGAAGCGGC+GGG - chr3_4:9090113-9090132 Msa0488940:CDS 50.0%
GAGGAGAGAGAGGAATCAGA+AGG - chr3_4:9090161-9090180 Msa0488940:CDS 50.0%
GAGAGGAATCAGAAGGGACA+TGG - chr3_4:9090168-9090187 Msa0488940:CDS 50.0%
GCAGACTTCCCAACTTCTGT+AGG + chr3_4:9090408-9090427 None:intergenic 50.0%
TCTTCTCCTCCACTTTCCCA+CGG + chr3_4:9090430-9090449 None:intergenic 50.0%
GCAACCATCCCTAGAATGTC+TGG + chr3_4:9090628-9090647 None:intergenic 50.0%
! GACATTCTAGGGATGGTTGC+AGG - chr3_4:9090628-9090647 Msa0488940:intron 50.0%
ACAGTGCTTCATCCTCTTGC+TGG - chr3_4:9090670-9090689 Msa0488940:intron 50.0%
TCTGGTCAGGGTTCAAACTC+GGG - chr3_4:9090977-9090996 Msa0488940:intron 50.0%
TTCCCCTCAGCAGCAAAATC+AGG - chr3_4:9091389-9091408 Msa0488940:intron 50.0%
TCCCCTCAGCAGCAAAATCA+GGG - chr3_4:9091390-9091409 Msa0488940:intron 50.0%
! ACCCTGATTTTGCTGCTGAG+GGG + chr3_4:9091394-9091413 None:intergenic 50.0%
! CACCCTGATTTTGCTGCTGA+GGG + chr3_4:9091395-9091414 None:intergenic 50.0%
! TCACCCTGATTTTGCTGCTG+AGG + chr3_4:9091396-9091415 None:intergenic 50.0%
CAGCAGCAAAATCAGGGTGA+TGG - chr3_4:9091396-9091415 Msa0488940:intron 50.0%
GTGCTAGCATAGCCCATGGA+AGG + chr3_4:9084835-9084854 Msa0488950:intron 55.0%
! TCCATGGGCTATGCTAGCAC+TGG - chr3_4:9084835-9084854 Msa0488940:intron 55.0%
TCCAGTGCTAGCATAGCCCA+TGG + chr3_4:9084839-9084858 Msa0488950:intron 55.0%
GGAAGCCTTAAGGACCTCCA+TGG + chr3_4:9085386-9085405 Msa0488950:intron 55.0%
TGGCCCCGTCAGTTTGTGAA+TGG + chr3_4:9085785-9085804 Msa0488950:intron 55.0%
GTGGGTAACGAGCAAACACC+TGG + chr3_4:9086396-9086415 Msa0488950:intron 55.0%
CCAACGGGTCAGTAACTACG+AGG + chr3_4:9088907-9088926 None:intergenic 55.0%
CCTCGTAGTTACTGACCCGT+TGG - chr3_4:9088904-9088923 Msa0488940:intron 55.0%
GGTGACAGTTTCGGGGAATG+TGG + chr3_4:9089476-9089495 None:intergenic 55.0%
AGGGGAAGGTGACAGTTTCG+GGG + chr3_4:9089483-9089502 None:intergenic 55.0%
CAGGGGAAGGTGACAGTTTC+GGG + chr3_4:9089484-9089503 None:intergenic 55.0%
GCCGGAACTGAATCTGTTGC+TGG + chr3_4:9089818-9089837 None:intergenic 55.0%
CAACAGATTCAGTTCCGGCG+CGG - chr3_4:9089819-9089838 Msa0488940:intron 55.0%
GTCAACTCTCCAGCTACGAC+TGG + chr3_4:9089921-9089940 None:intergenic 55.0%
ACCGCCGATAGCAATCCAAG+CGG - chr3_4:9089939-9089958 Msa0488940:intron 55.0%
TCCGCTTGGATTGCTATCGG+CGG + chr3_4:9089943-9089962 None:intergenic 55.0%
TCGTCGTCTCCGTCTTGCAT+CGG + chr3_4:9090005-9090024 None:intergenic 55.0%
ATGCAAGACGGAGACGACGA+TGG - chr3_4:9090005-9090024 Msa0488940:intron 55.0%
!! GACGATGGAAGTGTCGATGC+CGG - chr3_4:9090020-9090039 Msa0488940:intron 55.0%
!! GAAGTGTCGATGCCGGAGAA+CGG - chr3_4:9090027-9090046 Msa0488940:intron 55.0%
AGAAGTTGGGAAGTCTGCCG+TGG - chr3_4:9090410-9090429 Msa0488940:intron 55.0%
GAAGTTGGGAAGTCTGCCGT+GGG - chr3_4:9090411-9090430 Msa0488940:intron 55.0%
GTGCTTCATCCTCTTGCTGG+TGG - chr3_4:9090673-9090692 Msa0488940:intron 55.0%
GGAAGAAGCAACCGTCTTGG+TGG - chr3_4:9091312-9091331 Msa0488940:intron 55.0%
!! GGTCTCATGGGCTAGATGTC+CGG - chr3_4:9091567-9091586 Msa0488940:intron 55.0%
GCCCGGAAAAAACGGCATCG+TGG + chr3_4:9084556-9084575 Msa0488950:three_prime_UTR 60.0%
ATATGACCCGTGCGGCAGCA+CGG + chr3_4:9084880-9084899 Msa0488950:intron 60.0%
CGATCAAGACGCGGCGGTAT+TGG - chr3_4:9084994-9085013 Msa0488940:intron 60.0%
CCAAGCGGAACCATTCTCCG+CGG - chr3_4:9089954-9089973 Msa0488940:intron 60.0%
CGTCTCCGTCTTGCATCGGA+AGG + chr3_4:9090001-9090020 None:intergenic 60.0%
TTGTTTGGAGAAGCGGCGGG+CGG - chr3_4:9090116-9090135 Msa0488940:CDS 60.0%
GGAAGTCTGCCGTGGGAAAG+TGG - chr3_4:9090418-9090437 Msa0488940:intron 60.0%
AGTCTGCCGTGGGAAAGTGG+AGG - chr3_4:9090421-9090440 Msa0488940:intron 60.0%
CAACTACCCGTGCTGCCGCA+CGG - chr3_4:9084870-9084889 Msa0488940:intron 65.0%
AACTACCCGTGCTGCCGCAC+GGG - chr3_4:9084871-9084890 Msa0488940:intron 65.0%
TATGACCCGTGCGGCAGCAC+GGG + chr3_4:9084879-9084898 Msa0488950:intron 65.0%
CCGCGGAGAATGGTTCCGCT+TGG + chr3_4:9089957-9089976 None:intergenic 65.0%
! GTGTCGATGCCGGAGAACGG+AGG - chr3_4:9090030-9090049 Msa0488940:intron 65.0%
TTTGGAGAAGCGGCGGGCGG+TGG - chr3_4:9090119-9090138 Msa0488940:CDS 70.0%
TGGAGGGGAGGTGGTTGGCG+CGG - chr3_4:9090139-9090158 Msa0488940:CDS 70.0%
GGTTGGCGCGGAGGAGAGAG+AGG - chr3_4:9090151-9090170 Msa0488940:CDS 70.0%
!! CTGGTCGGAGAGTGCCGCGC+CGG + chr3_4:9089836-9089855 None:intergenic 75.0%
GAGAAGCGGCGGGCGGTGGA+GGG - chr3_4:9090123-9090142 Msa0488940:CDS 75.0%
AGAAGCGGCGGGCGGTGGAG+GGG - chr3_4:9090124-9090143 Msa0488940:CDS 75.0%
GGCGGTGGAGGGGAGGTGGT+TGG - chr3_4:9090134-9090153 Msa0488940:CDS 75.0%
AGGGGAGGTGGTTGGCGCGG+AGG - chr3_4:9090142-9090161 Msa0488940:CDS 75.0%
! GGAGAAGCGGCGGGCGGTGG+AGG - chr3_4:9090122-9090141 Msa0488940:CDS 80.0%
! AGCGGCGGGCGGTGGAGGGG+AGG - chr3_4:9090127-9090146 Msa0488940:CDS 85.0%
! GGCGGGCGGTGGAGGGGAGG+TGG - chr3_4:9090130-9090149 Msa0488940:CDS 85.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 9081985 9091725 9081985 ID=Msa0488940;Name=Msa0488940
chr3_4 mRNA 9081985 9091725 9081985 ID=Msa0488940-mRNA-1;Parent=Msa0488940;Name=Msa0488940-mRNA-1;_AED=0.34;_eAED=0.34;_QI=64|0.57|0.5|1|0.28|0.37|8|0|240
chr3_4 exon 9081985 9082004 9081985 ID=Msa0488940-mRNA-1:exon:3020;Parent=Msa0488940-mRNA-1
chr3_4 exon 9082299 9082483 9082299 ID=Msa0488940-mRNA-1:exon:3019;Parent=Msa0488940-mRNA-1
chr3_4 exon 9082985 9083085 9082985 ID=Msa0488940-mRNA-1:exon:3018;Parent=Msa0488940-mRNA-1
chr3_4 exon 9090070 9090198 9090070 ID=Msa0488940-mRNA-1:exon:3017;Parent=Msa0488940-mRNA-1
chr3_4 exon 9090505 9090562 9090505 ID=Msa0488940-mRNA-1:exon:3016;Parent=Msa0488940-mRNA-1
chr3_4 exon 9090842 9090915 9090842 ID=Msa0488940-mRNA-1:exon:3015;Parent=Msa0488940-mRNA-1
chr3_4 exon 9091086 9091221 9091086 ID=Msa0488940-mRNA-1:exon:3014;Parent=Msa0488940-mRNA-1
chr3_4 exon 9091645 9091725 9091645 ID=Msa0488940-mRNA-1:exon:3013;Parent=Msa0488940-mRNA-1
chr3_4 five_prime_UTR 9091662 9091725 9091662 ID=Msa0488940-mRNA-1:five_prime_utr;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9091645 9091661 9091645 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9091086 9091221 9091086 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9090842 9090915 9090842 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9090505 9090562 9090505 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9090070 9090198 9090070 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9082985 9083085 9082985 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9082299 9082483 9082299 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
chr3_4 CDS 9081985 9082004 9081985 ID=Msa0488940-mRNA-1:cds;Parent=Msa0488940-mRNA-1
Gene Sequence

>Msa0488940

ATGTCTACACCAGCAGAATACTTCTGGTCTTTACCTCCAGTGAGCAAGACTTTTGGAGTGGCATGTTTCATGACCACAGCTGCATATTATATGAATCTTTATGATGCAGAGAGCATAGCACTGTTTTATGGCTTAGTGTTTAAACGACTTCAGGTTTGGAGGCTTATCACAAATTTCTTCTTTCTTGGACCATTTTCATTTCCATTTGCAGTTCGTCTGATAATGATAGCAAAATATGGTGTTTCATTGGAAAGAGGTCCATTTGACAAGAGAACTGCAGATTTTGTGATGGCTGCTGTGCCATATTTATGGTCTCCATTCATGGGAATTTCTTTAGTTTTCATGATTGTCTATGTTTGGAGCCGTGAATTTCCAAATGCAAGAATCAACATTTATGGTTTGGTATCATTGAAGCCAGACATTCTAGGGATGGTTGCAGGACACTTATATTACTTCTTAACAGTGCTTCATCCTCTTGCTGGTGGAAAGTTCAAGTTCAATACTCCTCTCTTAGTTCACAAAATAGTGGCATATTGGGGAGAAGGTACCCAAATAAATGCTCCAGTGCAATCTAATCCATCAGCTGGAATTATATTCAAAGGAAGAAGCAACCGTCTTGGTGGAAATCAAACAACAGCAACAAGAAACACTTCACAGGAAACAAGTGGCAATGCTTCTTCCCCTCAGCAGCAAAATCAGGTTAGTGGGTTACATTGTTCT
Protein sequence

>Msa0488940

MSTPAEYFWSLPPVSKTFGVACFMTTAAYYMNLYDAESIALFYGLVFKRLQVWRLITNFFFLGPFSFPFAVRLIMIAKYGVSLERGPFDKRTADFVMAAVPYLWSPFMGISLVFMIVYVWSREFPNARINIYGLVSLKPDILGMVAGHLYYFLTVLHPLAGGKFKFNTPLLVHKIVAYWGEGTQINAPVQSNPSAGIIFKGRSNRLGGNQTTATRNTSQETSGNASSPQQQNQVSGLHCS