AlfalfaGEDB | Msa1121660

M. sativa cultivar zhongmu-4 / Msa1121660

KEGG: K08057
GO: GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827
PFAM: PF00262.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1121660	XP_003624204.1	96.912	421	3	1	1	411	1	421	0.0	831

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1121660	sp\|O04153\|CALR3_ARATH	73.923	418	90	4	12	411	8	424	0.0	598

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1121660	G7KRL3	96.912	421	3	1	1	411	1	421	0.0	831

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040580	Msa1121660	0.800054	1.725045e-48	-8.615850e-47
Msa0042410	Msa1121660	0.835394	1.721503e-56	-8.615850e-47
Msa0055730	Msa1121660	0.807461	4.997203e-50	-8.615850e-47
Msa0079650	Msa1121660	0.834269	3.304064e-56	-8.615850e-47
Msa0085290	Msa1121660	0.846310	2.354098e-59	-8.615850e-47
Msa0141230	Msa1121660	0.809022	2.322902e-50	-8.615850e-47
Msa0153430	Msa1121660	0.800689	1.280821e-48	-8.615850e-47
Msa0153450	Msa1121660	0.816115	6.529607e-52	-8.615850e-47
Msa0195770	Msa1121660	0.800060	1.720509e-48	-8.615850e-47
Msa0201330	Msa1121660	0.810597	1.064765e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1121660	MtrunA17_Chr7g0249551	96.912	421	3	1	1	411	1	421	0.0	831
Msa1121660	MtrunA17_Chr4g0033731	71.053	418	108	4	6	411	4	420	0.0	583
Msa1121660	MtrunA17_Chr1g0192661	61.905	336	118	1	22	347	21	356	2.21e-150	432
Msa1121660	MtrunA17_Chr8g0385501	31.144	411	197	14	1	336	1	400	4.19e-47	169
Msa1121660	MtrunA17_Chr3g0131441	32.439	410	194	15	1	338	1	399	8.96e-47	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1121660	AT1G08450.1	73.923	418	90	4	12	411	8	424	0.0	598
Msa1121660	AT1G08450.3	68.660	418	87	5	12	411	8	399	0.0	536
Msa1121660	AT1G08450.2	66.418	402	89	3	11	411	14	370	9.64e-177	498
Msa1121660	AT1G09210.1	60.393	356	130	2	11	355	8	363	1.82e-156	448
Msa1121660	AT1G56340.2	62.254	355	121	4	12	355	11	363	5.14e-156	447
Msa1121660	AT1G56340.1	60.784	357	129	2	10	355	7	363	3.08e-155	445
Msa1121660	AT5G61790.1	33.666	401	182	14	10	337	5	394	1.10e-52	184
Msa1121660	AT5G07340.2	34.211	380	171	13	26	337	36	404	2.74e-47	170
Msa1121660	AT5G07340.1	33.947	380	172	13	26	337	28	396	2.90e-47	169

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Find 111 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAGCGAAGGCAAAGC+CGG	0.546475	7_3:+71785565	Msa1121660:CDS
AAAATTGCTTATTCCGCAAA+TGG	0.420029	7_3:+71784866	Msa1121660:exon
AAACTCGTGCACATTACAAT+AGG	0.432719	7_3:-71790151	None:intergenic
AAGAAAAGCCCAAGAGGAGG+AGG	0.504679	7_3:+71789003	Msa1121660:CDS
AAGATGGATGGCGAAGTCGT+TGG	0.569423	7_3:+71785527	Msa1121660:intron
AAGGGAAATGGAAAACTCCA+TGG	0.558271	7_3:+71788191	Msa1121660:CDS
AATAAGAAAAGCCCAAGAGG+AGG	0.620304	7_3:+71789000	Msa1121660:CDS
AATATGTCGGCATAGAAGTT+TGG	0.412710	7_3:+71788373	Msa1121660:CDS
AATCAGATAAAAGATAACAA+AGG	0.666447	7_3:-71790005	None:intergenic
ACATAGAGACAGATATAGAA+AGG	0.555956	7_3:+71789189	Msa1121660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGCTTATTCCGCAAA+TGG	+	chr7_3:71784866-71784885	Msa1121660:exon	30.0%
GCGTGTAAAAATTATGTATG+AGG	+	chr7_3:71785766-71785785	Msa1121660:intron	30.0%
GTAATGTTATTGTAAAAGGG+AGG	+	chr7_3:71785798-71785817	Msa1121660:intron	30.0%
AAATGGTAGTAGCATGAATT+TGG	+	chr7_3:71785865-71785884	Msa1121660:intron	30.0%
TTTGATTAACAAATCCAGAG+AGG	-	chr7_3:71786076-71786095	None:intergenic	30.0%
GTGTTTGTAAAAATGATGCA+AGG	-	chr7_3:71786397-71786416	None:intergenic	30.0%
ATTCTCTACAGTGTAATGTT+TGG	+	chr7_3:71786478-71786497	Msa1121660:intron	30.0%
ACGAAAAATCAAAGATCTCA+AGG	+	chr7_3:71786717-71786736	Msa1121660:CDS	30.0%
TGCACACATATTAAGGAATA+TGG	-	chr7_3:71787490-71787509	None:intergenic	30.0%
TTCCTTAATATGTGTGCAAT+TGG	+	chr7_3:71787492-71787511	Msa1121660:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	71784839	71790315	71784839	ID=Msa1121660;Name=Msa1121660
chr7_3	mRNA	71784839	71790315	71784839	ID=Msa1121660-mRNA-1;Parent=Msa1121660;Name=Msa1121660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=46\|0.92\|0.86\|1\|0.85\|0.86\|15\|324\|411
chr7_3	exon	71784839	71784987	71784839	ID=Msa1121660-mRNA-1:exon:18483;Parent=Msa1121660-mRNA-1
chr7_3	exon	71785530	71785637	71785530	ID=Msa1121660-mRNA-1:exon:18484;Parent=Msa1121660-mRNA-1
chr7_3	exon	71785931	71786123	71785931	ID=Msa1121660-mRNA-1:exon:18485;Parent=Msa1121660-mRNA-1
chr7_3	exon	71786489	71786602	71786489	ID=Msa1121660-mRNA-1:exon:18486;Parent=Msa1121660-mRNA-1
chr7_3	exon	71786633	71786747	71786633	ID=Msa1121660-mRNA-1:exon:18487;Parent=Msa1121660-mRNA-1
chr7_3	exon	71787627	71787683	71787627	ID=Msa1121660-mRNA-1:exon:18488;Parent=Msa1121660-mRNA-1
chr7_3	exon	71787788	71787835	71787788	ID=Msa1121660-mRNA-1:exon:18489;Parent=Msa1121660-mRNA-1
chr7_3	exon	71787973	71788059	71787973	ID=Msa1121660-mRNA-1:exon:18490;Parent=Msa1121660-mRNA-1
chr7_3	exon	71788169	71788226	71788169	ID=Msa1121660-mRNA-1:exon:18491;Parent=Msa1121660-mRNA-1
chr7_3	exon	71788331	71788398	71788331	ID=Msa1121660-mRNA-1:exon:18492;Parent=Msa1121660-mRNA-1
chr7_3	exon	71788542	71788634	71788542	ID=Msa1121660-mRNA-1:exon:18493;Parent=Msa1121660-mRNA-1
chr7_3	exon	71788968	71789024	71788968	ID=Msa1121660-mRNA-1:exon:18494;Parent=Msa1121660-mRNA-1
chr7_3	exon	71789118	71789210	71789118	ID=Msa1121660-mRNA-1:exon:18495;Parent=Msa1121660-mRNA-1
chr7_3	exon	71789549	71789578	71789549	ID=Msa1121660-mRNA-1:exon:18496;Parent=Msa1121660-mRNA-1
chr7_3	exon	71789980	71790315	71789980	ID=Msa1121660-mRNA-1:exon:18497;Parent=Msa1121660-mRNA-1
chr7_3	five_prime_UTR	71784839	71784884	71784839	ID=Msa1121660-mRNA-1:five_prime_utr;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71784885	71784987	71784885	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71785530	71785637	71785530	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71785931	71786123	71785931	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71786489	71786602	71786489	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71786633	71786747	71786633	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71787627	71787683	71787627	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71787788	71787835	71787788	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71787973	71788059	71787973	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71788169	71788226	71788169	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71788331	71788398	71788331	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71788542	71788634	71788542	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71788968	71789024	71788968	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71789118	71789210	71789118	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71789549	71789578	71789549	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	CDS	71789980	71789991	71789980	ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1
chr7_3	three_prime_UTR	71789992	71790315	71789992	ID=Msa1121660-mRNA-1:three_prime_utr;Parent=Msa1121660-mRNA-1

Gene Sequence

>Msa1121660

ATGGCGGAAAATGCTTCAACTGAACTGAAGATGCTTGTGTTATTCTGTTTGTTGCTAATACAAGTTTCACTTTCTGAAGTCATCTTCGAAGAGCGTTTTGAAGATGGATGGCGAAGTCGTTGGGTAAGATCAGACTGGAAAAGTAGCGAAGGCAAAGCCGGTTCGTTCAAGCACACGGCTGGGAAATGGGCTGGAGATCCAGATGATAAAGGCATCCAAACATCTAATGATGCCAAACACTTTGCCATCTCTGCAAAGATACCAGAATTCAGTAACAAGAACAGAACACTGGTCTTCCAGTACTCAATAAAATTTGAACAAGAGATTGAGTGTGGTGGAGGTTACATGAAGCTCCTCTCTGGATTTGTTAATCAAAAGAAATTTGGTGGGGATACGCCGTATAGTGTAATGTTTGGACCAGATTTATGTGGAACAGACACAAAGAAGCTCCATGTCATAGTCTCTTACCAAGGTCAAAATTACCCGGTAAAGAAGGACCTGCAGTGTGAAACTGACAAACCAGATGCTACATACAGTGTTCTGGTTGATAATAGAGAGCGAGATTCCGGAAGCCTGTATACAGATTGGGATATTCTCCCTCCACGAAAAATCAAAGATCTCAAGGCAAAAAAGCCCGCAGATTGGGACGACAGAGAATACATTGAAGACCCTAATGCTGTCAAACCTGAGGGATATGATTCAATCCCAGCAGAAATTCCTGATCCAAAGGCTAAAGAGCCTGATAGTTGGGATGAAGATGAAGATGGAATATGGAAGAGGCCAAAGATACCAAATCCAGCATACAAAGGACCATGGAAACGAAAGAAAATCAAGAATCCTAACTACAAAGGGAAATGGAAAACTCCATGGATTGATAATCCAGAGTTTGAAGATGACCCCGATCTTTATGTGCTTAAGCCTATCAAATATGTCGGCATAGAAGTTTGGCAGGTTAAAGGCGGTTCAGTATTTGACAACATTTTGATATGCGATGATCCTGAATATGCAAAACAAGTTGTTGATGAAGTGTTTGCCAACAGAGAGATTGAAAAAGAGGCTTTTGAGGAAGCAGAGAAAATAAGAAAAGCCCAAGAGGAGGAGGAGGCTCAAAGAGCAAGAGAAGACGGTGAAAGGCGGAGAAAAGAGAGAGGTTATGATCGACACCGTGACAGACATAGAGACAGATATAGAAAGCATCGCCGCGATTACATGGATGATTATCATGATGAACTCTGA

Protein sequence

>Msa1121660

MAENASTELKMLVLFCLLLIQVSLSEVIFEERFEDGWRSRWVRSDWKSSEGKAGSFKHTAGKWAGDPDDKGIQTSNDAKHFAISAKIPEFSNKNRTLVFQYSIKFEQEIECGGGYMKLLSGFVNQKKFGGDTPYSVMFGPDLCGTDTKKLHVIVSYQGQNYPVKKDLQCETDKPDATYSVLVDNRERDSGSLYTDWDILPPRKIKDLKAKKPADWDDREYIEDPNAVKPEGYDSIPAEIPDPKAKEPDSWDEDEDGIWKRPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNILICDDPEYAKQVVDEVFANREIEKEAFEEAEKIRKAQEEEEAQRAREDGERRRKERGYDRHRDRHRDRYRKHRRDYMDDYHDEL*