Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121660 | XP_003624204.1 | 96.912 | 421 | 3 | 1 | 1 | 411 | 1 | 421 | 0.0 | 831 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121660 | sp|O04153|CALR3_ARATH | 73.923 | 418 | 90 | 4 | 12 | 411 | 8 | 424 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121660 | G7KRL3 | 96.912 | 421 | 3 | 1 | 1 | 411 | 1 | 421 | 0.0 | 831 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040580 | Msa1121660 | 0.800054 | 1.725045e-48 | -8.615850e-47 |
| Msa0042410 | Msa1121660 | 0.835394 | 1.721503e-56 | -8.615850e-47 |
| Msa0055730 | Msa1121660 | 0.807461 | 4.997203e-50 | -8.615850e-47 |
| Msa0079650 | Msa1121660 | 0.834269 | 3.304064e-56 | -8.615850e-47 |
| Msa0085290 | Msa1121660 | 0.846310 | 2.354098e-59 | -8.615850e-47 |
| Msa0607180 | Msa1121660 | 0.852306 | 5.032793e-61 | -8.615850e-47 |
| Msa0618430 | Msa1121660 | 0.813418 | 2.585778e-51 | -8.615850e-47 |
| Msa0621590 | Msa1121660 | 0.805916 | 1.059254e-49 | -8.615850e-47 |
| Msa0623080 | Msa1121660 | 0.806653 | 7.409166e-50 | -8.615850e-47 |
| Msa0647360 | Msa1121660 | 0.857999 | 1.113258e-62 | -8.615850e-47 |
| Msa0690230 | Msa1121660 | 0.800401 | 1.466252e-48 | -8.615850e-47 |
| Msa0696740 | Msa1121660 | 0.811198 | 7.894279e-51 | -8.615850e-47 |
| Msa0696770 | Msa1121660 | 0.805605 | 1.231268e-49 | -8.615850e-47 |
| Msa0762850 | Msa1121660 | 0.811306 | 7.478155e-51 | -8.615850e-47 |
| Msa0141230 | Msa1121660 | 0.809022 | 2.322902e-50 | -8.615850e-47 |
| Msa0153430 | Msa1121660 | 0.800689 | 1.280821e-48 | -8.615850e-47 |
| Msa0153450 | Msa1121660 | 0.816115 | 6.529607e-52 | -8.615850e-47 |
| Msa0195770 | Msa1121660 | 0.800060 | 1.720509e-48 | -8.615850e-47 |
| Msa0201330 | Msa1121660 | 0.810597 | 1.064765e-50 | -8.615850e-47 |
| Msa0201370 | Msa1121660 | 0.813998 | 1.926947e-51 | -8.615850e-47 |
| Msa0201390 | Msa1121660 | 0.803050 | 4.194272e-49 | -8.615850e-47 |
| Msa0202750 | Msa1121660 | 0.818573 | 1.826520e-52 | -8.615850e-47 |
| Msa0212310 | Msa1121660 | 0.847785 | 9.283810e-60 | -8.615850e-47 |
| Msa0418960 | Msa1121660 | 0.815675 | 8.188165e-52 | -8.615850e-47 |
| Msa0426110 | Msa1121660 | 0.812211 | 4.752474e-51 | -8.615850e-47 |
| Msa0445040 | Msa1121660 | 0.821734 | 3.449276e-53 | -8.615850e-47 |
| Msa0996130 | Msa1121660 | 0.801091 | 1.060141e-48 | -8.615850e-47 |
| Msa1026500 | Msa1121660 | 0.860458 | 2.037459e-63 | -8.615850e-47 |
| Msa1026510 | Msa1121660 | 0.813374 | 2.644020e-51 | -8.615850e-47 |
| Msa1029090 | Msa1121660 | 0.950734 | 8.921941e-109 | -8.615850e-47 |
| Msa1037710 | Msa1121660 | 0.820097 | 8.212888e-53 | -8.615850e-47 |
| Msa1074570 | Msa1121660 | 0.866998 | 1.891235e-65 | -8.615850e-47 |
| Msa1074580 | Msa1121660 | 0.804031 | 2.624970e-49 | -8.615850e-47 |
| Msa0243930 | Msa1121660 | 0.823376 | 1.432168e-53 | -8.615850e-47 |
| Msa0243940 | Msa1121660 | 0.807157 | 5.796324e-50 | -8.615850e-47 |
| Msa0245880 | Msa1121660 | 0.843025 | 1.805471e-58 | -8.615850e-47 |
| Msa0256270 | Msa1121660 | 0.820951 | 5.229027e-53 | -8.615850e-47 |
| Msa0282590 | Msa1121660 | 0.842797 | 2.076618e-58 | -8.615850e-47 |
| Msa0347180 | Msa1121660 | 0.832338 | 1.000766e-55 | -8.615850e-47 |
| Msa1107800 | Msa1121660 | 0.833259 | 5.910229e-56 | -8.615850e-47 |
| Msa1111750 | Msa1121660 | 0.823322 | 1.473952e-53 | -8.615850e-47 |
| Msa1111760 | Msa1121660 | 0.867793 | 1.053350e-65 | -8.615850e-47 |
| Msa1121660 | Msa1154070 | 0.867221 | 1.605200e-65 | -8.615850e-47 |
| Msa1121660 | Msa1154080 | 0.806728 | 7.145598e-50 | -8.615850e-47 |
| Msa1121660 | Msa1156180 | 0.950880 | 6.582330e-109 | -8.615850e-47 |
| Msa1121660 | Msa1179120 | 0.825354 | 4.907998e-54 | -8.615850e-47 |
| Msa1121660 | Msa1181550 | 0.812107 | 5.005920e-51 | -8.615850e-47 |
| Msa1121660 | Msa1265950 | 0.807396 | 5.158569e-50 | -8.615850e-47 |
| Msa1121660 | Msa1381940 | 0.806738 | 7.109538e-50 | -8.615850e-47 |
| Msa1121660 | Msa1393410 | 0.801559 | 8.505408e-49 | -8.615850e-47 |
| Msa1121660 | Msa1435420 | 0.801946 | 7.084104e-49 | -8.615850e-47 |
| Msa1121660 | Msa1454000 | 0.807380 | 5.200028e-50 | -8.615850e-47 |
| Msa1121660 | Msa1458510 | 0.801832 | 7.475145e-49 | -8.615850e-47 |
| Msa1121660 | Msa1461250 | -0.814239 | 1.704880e-51 | -8.615850e-47 |
| Msa0488940 | Msa1121660 | 0.825237 | 5.231321e-54 | -8.615850e-47 |
| Msa0506300 | Msa1121660 | 0.831320 | 1.784996e-55 | -8.615850e-47 |
| Msa0524890 | Msa1121660 | -0.808353 | 3.228354e-50 | -8.615850e-47 |
| Msa0528970 | Msa1121660 | 0.801317 | 9.534296e-49 | -8.615850e-47 |
| Msa0886330 | Msa1121660 | -0.807068 | 6.055846e-50 | -8.615850e-47 |
| Msa0946680 | Msa1121660 | 0.945039 | 6.429598e-104 | -8.615850e-47 |
| Msa0961460 | Msa1121660 | 0.838093 | 3.528237e-57 | -8.615850e-47 |
| Msa0961490 | Msa1121660 | 0.812205 | 4.767533e-51 | -8.615850e-47 |
| Msa0964130 | Msa1121660 | 0.810935 | 9.001304e-51 | -8.615850e-47 |
| Msa0976640 | Msa1121660 | 0.829301 | 5.556840e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121660 | MtrunA17_Chr7g0249551 | 96.912 | 421 | 3 | 1 | 1 | 411 | 1 | 421 | 0.0 | 831 |
| Msa1121660 | MtrunA17_Chr4g0033731 | 71.053 | 418 | 108 | 4 | 6 | 411 | 4 | 420 | 0.0 | 583 |
| Msa1121660 | MtrunA17_Chr1g0192661 | 61.905 | 336 | 118 | 1 | 22 | 347 | 21 | 356 | 2.21e-150 | 432 |
| Msa1121660 | MtrunA17_Chr8g0385501 | 31.144 | 411 | 197 | 14 | 1 | 336 | 1 | 400 | 4.19e-47 | 169 |
| Msa1121660 | MtrunA17_Chr3g0131441 | 32.439 | 410 | 194 | 15 | 1 | 338 | 1 | 399 | 8.96e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1121660 | AT1G08450.1 | 73.923 | 418 | 90 | 4 | 12 | 411 | 8 | 424 | 0.0 | 598 |
| Msa1121660 | AT1G08450.3 | 68.660 | 418 | 87 | 5 | 12 | 411 | 8 | 399 | 0.0 | 536 |
| Msa1121660 | AT1G08450.2 | 66.418 | 402 | 89 | 3 | 11 | 411 | 14 | 370 | 9.64e-177 | 498 |
| Msa1121660 | AT1G09210.1 | 60.393 | 356 | 130 | 2 | 11 | 355 | 8 | 363 | 1.82e-156 | 448 |
| Msa1121660 | AT1G56340.2 | 62.254 | 355 | 121 | 4 | 12 | 355 | 11 | 363 | 5.14e-156 | 447 |
| Msa1121660 | AT1G56340.1 | 60.784 | 357 | 129 | 2 | 10 | 355 | 7 | 363 | 3.08e-155 | 445 |
| Msa1121660 | AT5G61790.1 | 33.666 | 401 | 182 | 14 | 10 | 337 | 5 | 394 | 1.10e-52 | 184 |
| Msa1121660 | AT5G07340.2 | 34.211 | 380 | 171 | 13 | 26 | 337 | 36 | 404 | 2.74e-47 | 170 |
| Msa1121660 | AT5G07340.1 | 33.947 | 380 | 172 | 13 | 26 | 337 | 28 | 396 | 2.90e-47 | 169 |
Find 111 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTGTTGTTAATTTAT+TGG | 0.117791 | 7_3:+71790083 | Msa1121660:three_prime_UTR |
| CTGTTCTTGTTACTGAATTC+TGG | 0.179488 | 7_3:-71785981 | None:intergenic |
| TATGCTGGATTTGGTATCTT+TGG | 0.251014 | 7_3:-71788015 | None:intergenic |
| CACTGCAGGTCCTTCTTTAC+CGG | 0.255730 | 7_3:-71786568 | None:intergenic |
| TTTGTTAATCAAAAGAAATT+TGG | 0.279487 | 7_3:+71786083 | Msa1121660:CDS |
| TCAAGCACACGGCTGGGAAA+TGG | 0.314152 | 7_3:+71785593 | Msa1121660:CDS |
| TTCCATTTCCCTTTGTAGTT+AGG | 0.319731 | 7_3:-71788181 | None:intergenic |
| CAACTAACCTCTTTAGCCTT+TGG | 0.340138 | 7_3:-71787821 | None:intergenic |
| TGCAGAGATGGCAAAGTGTT+TGG | 0.351900 | 7_3:-71785952 | None:intergenic |
| GTTCATGTACCTCCTCCTCT+TGG | 0.352586 | 7_3:-71789012 | None:intergenic |
| TTCCATGGTCCTTTGTATGC+TGG | 0.361782 | 7_3:-71788030 | None:intergenic |
| ACCTCAGGTTTGACAGCATT+AGG | 0.362351 | 7_3:-71787663 | None:intergenic |
| GTGTCTGTTCCACATAAATC+TGG | 0.363941 | 7_3:-71786502 | None:intergenic |
| ATGAAGATGAAGATGGAATA+TGG | 0.364616 | 7_3:+71787986 | Msa1121660:CDS |
| GATAATAGAGAGCGAGATTC+CGG | 0.368628 | 7_3:+71786661 | Msa1121660:CDS |
| GGTCCTTTGTATGCTGGATT+TGG | 0.374372 | 7_3:-71788024 | None:intergenic |
| TCATCTTCATCCCAACTATC+AGG | 0.377430 | 7_3:-71787973 | None:intergenic |
| TCTATGCCGACATATTTGAT+AGG | 0.381388 | 7_3:-71788366 | None:intergenic |
| CCTCAGGTTTGACAGCATTA+GGG | 0.383111 | 7_3:-71787662 | None:intergenic |
| CTATTCGCAGCCCGCAGATT+GGG | 0.390617 | 7_3:+71787617 | Msa1121660:intron |
| ACCTCTTTAGCCTTTGGATC+AGG | 0.399373 | 7_3:-71787815 | None:intergenic |
| CAAGCACACGGCTGGGAAAT+GGG | 0.400621 | 7_3:+71785594 | Msa1121660:CDS |
| GTTTGGCATCATTAGATGTT+TGG | 0.400972 | 7_3:-71785935 | None:intergenic |
| TTCATGTACCTCCTCCTCTT+GGG | 0.404891 | 7_3:-71789011 | None:intergenic |
| ATCCTAACTACAAAGGGAAA+TGG | 0.410266 | 7_3:+71788179 | Msa1121660:CDS |
| AATATGTCGGCATAGAAGTT+TGG | 0.412710 | 7_3:+71788373 | Msa1121660:CDS |
| ATTCTCTACAGTGTAATGTT+TGG | 0.413800 | 7_3:+71786478 | Msa1121660:intron |
| AAAATTGCTTATTCCGCAAA+TGG | 0.420029 | 7_3:+71784866 | Msa1121660:exon |
| GAATGAGCAACACACCTATA+CGG | 0.423544 | 7_3:-71786116 | None:intergenic |
| CCTATTCGCAGCCCGCAGAT+TGG | 0.426278 | 7_3:+71787616 | Msa1121660:intron |
| TTTGGATCAGGAATTTCTGC+TGG | 0.426476 | 7_3:-71787803 | None:intergenic |
| TCTGAATTAGCCTGATAGTT+GGG | 0.429924 | 7_3:+71787963 | Msa1121660:intron |
| AAACTCGTGCACATTACAAT+AGG | 0.432719 | 7_3:-71790151 | None:intergenic |
| TCCAATAAATTAACAACAGA+TGG | 0.433646 | 7_3:-71790084 | None:intergenic |
| GGCTTAAGCACATAAAGATC+GGG | 0.434356 | 7_3:-71788345 | None:intergenic |
| ATAGGCTTTGCAACAATGCT+TGG | 0.441546 | 7_3:-71790133 | None:intergenic |
| CAACAAGTACCTTTATCATC+TGG | 0.442115 | 7_3:-71785625 | None:intergenic |
| CCAATCTGTATACAGGCTTC+CGG | 0.442635 | 7_3:-71786680 | None:intergenic |
| ACTTAATAATGATATATAGT+TGG | 0.445274 | 7_3:+71790108 | Msa1121660:three_prime_UTR |
| CTCTGAATTAGCCTGATAGT+TGG | 0.446966 | 7_3:+71787962 | Msa1121660:intron |
| CCGGAAGCCTGTATACAGAT+TGG | 0.462529 | 7_3:+71786680 | Msa1121660:CDS |
| CACACGGCTGGGAAATGGGC+TGG | 0.464724 | 7_3:+71785598 | Msa1121660:CDS |
| GGTTACATGAAGCTCCTCTC+TGG | 0.465293 | 7_3:+71786059 | Msa1121660:CDS |
| AGATGGATGGCGAAGTCGTT+GGG | 0.466818 | 7_3:+71785528 | Msa1121660:intron |
| GAATATCCCAATCTGTATAC+AGG | 0.467718 | 7_3:-71786687 | None:intergenic |
| CAACAAACCTTTCGTTTCCA+TGG | 0.469118 | 7_3:-71788045 | None:intergenic |
| CGGAAGCCTGTATACAGATT+GGG | 0.473200 | 7_3:+71786681 | Msa1121660:CDS |
| GCTGGAGATCCAGATGATAA+AGG | 0.477830 | 7_3:+71785616 | Msa1121660:CDS |
| TCCTGATCCAAAGGCTAAAG+AGG | 0.483883 | 7_3:+71787814 | Msa1121660:CDS |
| GTTAATCAAAAGAAATTTGG+TGG | 0.491208 | 7_3:+71786086 | Msa1121660:CDS |
| AGCCGTGTGCTTGAACGAAC+CGG | 0.494358 | 7_3:-71785584 | None:intergenic |
| TTGGATCAGGAATTTCTGCT+GGG | 0.499650 | 7_3:-71787802 | None:intergenic |
| AAGAAAAGCCCAAGAGGAGG+AGG | 0.504679 | 7_3:+71789003 | Msa1121660:CDS |
| TTCTGGTATCTTTGCAGAGA+TGG | 0.507021 | 7_3:-71785964 | None:intergenic |
| TCAAGAATCCTAACTACAAA+GGG | 0.508174 | 7_3:+71788173 | Msa1121660:CDS |
| ACTTGTCAGTTTCACACTGC+AGG | 0.509837 | 7_3:-71786582 | None:intergenic |
| TCAAAATTACCCGGTAAAGA+AGG | 0.510564 | 7_3:+71786558 | Msa1121660:CDS |
| GAGCAAGAGAAGACGGTGAA+AGG | 0.515516 | 7_3:+71789128 | Msa1121660:CDS |
| GCAGCATCGCCGCGATTACA+TGG | 0.517741 | 7_3:+71789545 | Msa1121660:intron |
| TTCTCTGTCGTCCCAATCTG+CGG | 0.522625 | 7_3:-71787628 | None:intergenic |
| AGAACACTGTATGTAGCATC+TGG | 0.525406 | 7_3:-71786634 | None:intergenic |
| AGATGCTACATACAGTGTTC+TGG | 0.526327 | 7_3:+71786636 | Msa1121660:CDS |
| AGGCTTAAGCACATAAAGAT+CGG | 0.527530 | 7_3:-71788346 | None:intergenic |
| TTAATCAAAAGAAATTTGGT+GGG | 0.527656 | 7_3:+71786087 | Msa1121660:CDS |
| CAAGAGATTGAGTGTGGTGG+AGG | 0.529964 | 7_3:+71786038 | Msa1121660:CDS |
| ATCTGTCTCTATGTCTGTCA+CGG | 0.542268 | 7_3:-71789180 | None:intergenic |
| ATGTTTGGACCAGATTTATG+TGG | 0.542362 | 7_3:+71786493 | Msa1121660:CDS |
| TTGGTGGGGATACGCCGTAT+AGG | 0.545055 | 7_3:+71786102 | Msa1121660:CDS |
| GGAACATACTACAAATATCA+AGG | 0.546424 | 7_3:-71790063 | None:intergenic |
| AAAAGTAGCGAAGGCAAAGC+CGG | 0.546475 | 7_3:+71785565 | Msa1121660:CDS |
| ATCAAGAATCCTAACTACAA+AGG | 0.551395 | 7_3:+71788172 | Msa1121660:CDS |
| ATGAAGATGGAATATGGAAG+AGG | 0.552425 | 7_3:+71787992 | Msa1121660:CDS |
| TCTCTGTCGTCCCAATCTGC+GGG | 0.553759 | 7_3:-71787627 | None:intergenic |
| ACATAGAGACAGATATAGAA+AGG | 0.555956 | 7_3:+71789189 | Msa1121660:CDS |
| TGTCGGCATAGAAGTTTGGC+AGG | 0.557113 | 7_3:+71788377 | Msa1121660:CDS |
| AAGGGAAATGGAAAACTCCA+TGG | 0.558271 | 7_3:+71788191 | Msa1121660:CDS |
| TAATCAAAAGAAATTTGGTG+GGG | 0.560107 | 7_3:+71786088 | Msa1121660:CDS |
| GCTCAAAGAGCAAGAGAAGA+CGG | 0.562934 | 7_3:+71789121 | Msa1121660:CDS |
| AAGATGGATGGCGAAGTCGT+TGG | 0.569423 | 7_3:+71785527 | Msa1121660:intron |
| GAAAATAAGAAAAGCCCAAG+AGG | 0.570219 | 7_3:+71788997 | Msa1121660:CDS |
| AGTTGGGATGAAGATGAAGA+TGG | 0.576627 | 7_3:+71787979 | Msa1121660:CDS |
| ACTCCATGGATTGATAATCC+AGG | 0.577290 | 7_3:+71788205 | Msa1121660:CDS |
| AGCCGGTTCGTTCAAGCACA+CGG | 0.577430 | 7_3:+71785582 | Msa1121660:CDS |
| AGCAGAAATTCCTGATCCAA+AGG | 0.579110 | 7_3:+71787805 | Msa1121660:CDS |
| GTTCGTTCAAGCACACGGCT+GGG | 0.581442 | 7_3:+71785587 | Msa1121660:CDS |
| CAAGAGAAGACGGTGAAAGG+CGG | 0.587834 | 7_3:+71789131 | Msa1121660:CDS |
| ACTGCAGGTCCTTCTTTACC+GGG | 0.588635 | 7_3:-71786567 | None:intergenic |
| ATACCTGGATTATCAATCCA+TGG | 0.589530 | 7_3:-71788208 | None:intergenic |
| GTCGTTGGGTAAGATCAGAC+TGG | 0.597270 | 7_3:+71785542 | Msa1121660:CDS |
| CTTAAGCCTATCAAATATGT+CGG | 0.600649 | 7_3:+71788360 | Msa1121660:CDS |
| AATAAGAAAAGCCCAAGAGG+AGG | 0.620304 | 7_3:+71789000 | Msa1121660:CDS |
| ATTGCTTATTCCGCAAATGG+CGG | 0.631161 | 7_3:+71784869 | Msa1121660:exon |
| CATGTCATAGTCTCTTACCA+AGG | 0.632816 | 7_3:+71786535 | Msa1121660:CDS |
| CAAAGGACCATGGAAACGAA+AGG | 0.637290 | 7_3:+71788038 | Msa1121660:CDS |
| ATCCAGCATACAAAGGACCA+TGG | 0.638923 | 7_3:+71788028 | Msa1121660:CDS |
| TCAGACTGGAAAAGTAGCGA+AGG | 0.639971 | 7_3:+71785556 | Msa1121660:CDS |
| TTTGAACAAGAGATTGAGTG+TGG | 0.647453 | 7_3:+71786032 | Msa1121660:CDS |
| TTACCAAGGTCAAAATTACC+CGG | 0.651196 | 7_3:+71786549 | Msa1121660:CDS |
| ATACCAAATCCAGCATACAA+AGG | 0.656179 | 7_3:+71788021 | Msa1121660:CDS |
| TTTGATTAACAAATCCAGAG+AGG | 0.658404 | 7_3:-71786073 | None:intergenic |
| CCCTAATGCTGTCAAACCTG+AGG | 0.659724 | 7_3:+71787662 | Msa1121660:CDS |
| CAGTAACAAGAACAGAACAC+TGG | 0.665735 | 7_3:+71785989 | Msa1121660:CDS |
| AATCAGATAAAAGATAACAA+AGG | 0.666447 | 7_3:-71790005 | None:intergenic |
| CTTGGTAAGAGACTATGACA+TGG | 0.669207 | 7_3:-71786534 | None:intergenic |
| ATGTGCAGGATGAACTCTGA+TGG | 0.669481 | 7_3:+71789972 | Msa1121660:intron |
| GATAATCATCCATGTAATCG+CGG | 0.671982 | 7_3:-71789554 | None:intergenic |
| GAACAAGAGATTGAGTGTGG+TGG | 0.677513 | 7_3:+71786035 | Msa1121660:CDS |
| GAAAGGCGGAGAAAAGAGAG+AGG | 0.679954 | 7_3:+71789145 | Msa1121660:CDS |
| TGAACTCTGATGGTATAAAG+CGG | 0.680046 | 7_3:+71789982 | Msa1121660:exon |
| GCTTAAGCACATAAAGATCG+GGG | 0.701732 | 7_3:-71788344 | None:intergenic |
| TGAAGTGTTTGCCAACAGAG+AGG | 0.753342 | 7_3:+71788613 | Msa1121660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGCTTAATTATTTTTT+TGG | - | chr7_3:71787066-71787085 | None:intergenic | 10.0% |
| !! | TTAAAGAAAAAATAATACTT+TGG | - | chr7_3:71787400-71787419 | None:intergenic | 10.0% |
| !!! | TAAAATTAATGCATATATTT+TGG | + | chr7_3:71788514-71788533 | Msa1121660:intron | 10.0% |
| !! | TATTACTTCAAGAATTTAAT+TGG | + | chr7_3:71785217-71785236 | Msa1121660:intron | 15.0% |
| !! | AAAATGAATAAAAGACAAAT+AGG | + | chr7_3:71785389-71785408 | Msa1121660:intron | 15.0% |
| !!! | AATGTAAAATGGATTATTAT+AGG | + | chr7_3:71785705-71785724 | Msa1121660:intron | 15.0% |
| !!! | TTAACTATTAGATGTTATTT+TGG | + | chr7_3:71785728-71785747 | Msa1121660:intron | 15.0% |
| !! | TTTGTTAATCAAAAGAAATT+TGG | + | chr7_3:71786083-71786102 | Msa1121660:CDS | 15.0% |
| !! | TTTGATTAATATTAAAGTAG+AGG | - | chr7_3:71786218-71786237 | None:intergenic | 15.0% |
| !!! | ACTTTTATACATAAAAGATA+AGG | - | chr7_3:71786930-71786949 | None:intergenic | 15.0% |
| !! | ATGTATAAAAGTTAGATATA+AGG | + | chr7_3:71786938-71786957 | Msa1121660:intron | 15.0% |
| !!! | AAAAATACATGGATTATTAA+AGG | - | chr7_3:71787012-71787031 | None:intergenic | 15.0% |
| !! | TGAAGTTATAAAAAAATACA+TGG | - | chr7_3:71787023-71787042 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr7_3:71787296-71787315 | None:intergenic | 15.0% |
| !! | AGAAAAAGTTATTATTACAT+TGG | - | chr7_3:71787336-71787355 | None:intergenic | 15.0% |
| !! | GTAACATATTATTAATTGAA+GGG | - | chr7_3:71787370-71787389 | None:intergenic | 15.0% |
| !! | TGTAACATATTATTAATTGA+AGG | - | chr7_3:71787371-71787390 | None:intergenic | 15.0% |
| !!! | AACTCATTTATTTTTTTCAT+TGG | + | chr7_3:71787757-71787776 | Msa1121660:intron | 15.0% |
| !! | ACTCATAAATAAACAATATT+AGG | - | chr7_3:71789354-71789373 | None:intergenic | 15.0% |
| !!! | ATATTTCTAATGACATTATT+AGG | - | chr7_3:71789431-71789450 | None:intergenic | 15.0% |
| !!! | TTATGACTTTTTTTTTTTGA+AGG | - | chr7_3:71789724-71789743 | None:intergenic | 15.0% |
| !!! | TCATAACATTAGTTTAAAAA+GGG | + | chr7_3:71789738-71789757 | Msa1121660:intron | 15.0% |
| !! | ACTTAATAATGATATATAGT+TGG | + | chr7_3:71790108-71790127 | Msa1121660:three_prime_UTR | 15.0% |
| !! | AGTGAAAAGTTAGTTAAATT+TGG | + | chr7_3:71785049-71785068 | Msa1121660:intron | 20.0% |
| !! | AATAGAAATTTAAACATACG+TGG | - | chr7_3:71785170-71785189 | None:intergenic | 20.0% |
| !! | TGTGATTATGATTATAAGAA+TGG | + | chr7_3:71785320-71785339 | Msa1121660:intron | 20.0% |
| !! | CATTAATATCACATAATCAA+TGG | - | chr7_3:71785493-71785512 | None:intergenic | 20.0% |
| !! | ATTATGTGATATTAATGTGT+TGG | + | chr7_3:71785496-71785515 | Msa1121660:intron | 20.0% |
| !! | TCTTGTAATGTTATTGTAAA+AGG | + | chr7_3:71785794-71785813 | Msa1121660:intron | 20.0% |
| !! | CTTGTAATGTTATTGTAAAA+GGG | + | chr7_3:71785795-71785814 | Msa1121660:intron | 20.0% |
| !! | TTAATCAAAAGAAATTTGGT+GGG | + | chr7_3:71786087-71786106 | Msa1121660:CDS | 20.0% |
| !! | TCAAAAGCTAATTAAACTAA+CGG | + | chr7_3:71786271-71786290 | Msa1121660:intron | 20.0% |
| !!! | ATCTTTTATAAAACACTGTT+TGG | - | chr7_3:71786892-71786911 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | - | chr7_3:71787434-71787453 | None:intergenic | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | + | chr7_3:71787433-71787452 | Msa1121660:intron | 20.0% |
| !! | ACAAAGAACAAGAAATAAAT+TGG | - | chr7_3:71788237-71788256 | None:intergenic | 20.0% |
| !! | ATTAATAGAGGATAGATAAA+AGG | - | chr7_3:71789380-71789399 | None:intergenic | 20.0% |
| !!! | CACGTATATTTTATTAATAG+AGG | - | chr7_3:71789392-71789411 | None:intergenic | 20.0% |
| !! | CTCTATTAATAAAATATACG+TGG | + | chr7_3:71789390-71789409 | Msa1121660:intron | 20.0% |
| !!! | GTCATAACATTAGTTTAAAA+AGG | + | chr7_3:71789737-71789756 | Msa1121660:intron | 20.0% |
| !!! | CATAACATTAGTTTAAAAAG+GGG | + | chr7_3:71789739-71789758 | Msa1121660:intron | 20.0% |
| !! | AATCAGATAAAAGATAACAA+AGG | - | chr7_3:71790008-71790027 | None:intergenic | 20.0% |
| !!! | TTCACTTATATTTTTACCGT+TGG | - | chr7_3:71785035-71785054 | None:intergenic | 25.0% |
| ! | AAACAAAAAAAAGTGATGTG+TGG | + | chr7_3:71785432-71785451 | Msa1121660:intron | 25.0% |
| ! | GCTATGAATGAAATGTAAAA+TGG | + | chr7_3:71785694-71785713 | Msa1121660:intron | 25.0% |
| !!! | ATTTTGGAGTTAGTTTGTTT+TGG | + | chr7_3:71785744-71785763 | Msa1121660:intron | 25.0% |
| ! | CGTGTAAAAATTATGTATGA+GGG | + | chr7_3:71785767-71785786 | Msa1121660:intron | 25.0% |
| !! | GTTCAAATTTTATTGAGTAC+TGG | - | chr7_3:71786019-71786038 | None:intergenic | 25.0% |
| ! | GTTAATCAAAAGAAATTTGG+TGG | + | chr7_3:71786086-71786105 | Msa1121660:CDS | 25.0% |
| !! | TAATCAAAAGAAATTTGGTG+GGG | + | chr7_3:71786088-71786107 | Msa1121660:CDS | 25.0% |
| ! | CAAAAACTAAGTGAAGAAAA+TGG | - | chr7_3:71786141-71786160 | None:intergenic | 25.0% |
| !! | TGTTGTTCTTCTCTTTTTAT+TGG | + | chr7_3:71786333-71786352 | Msa1121660:intron | 25.0% |
| ! | AAAATACCATGTTACAACAA+GGG | - | chr7_3:71786368-71786387 | None:intergenic | 25.0% |
| ! | TAAAATACCATGTTACAACA+AGG | - | chr7_3:71786369-71786388 | None:intergenic | 25.0% |
| !! | CTGTTGAAAAGTATAAAATG+CGG | - | chr7_3:71786437-71786456 | None:intergenic | 25.0% |
| !!! | ATAAGGAACTTTTCTAAAAG+TGG | + | chr7_3:71786955-71786974 | Msa1121660:intron | 25.0% |
| !! | GAAATAAGGCTAAATTTGTT+TGG | - | chr7_3:71787103-71787122 | None:intergenic | 25.0% |
| !!! | GCATAAGTGTTTTAGAAATA+AGG | - | chr7_3:71787117-71787136 | None:intergenic | 25.0% |
| !! | TTTTAATGCCAAAATAAGTC+TGG | + | chr7_3:71787159-71787178 | Msa1121660:intron | 25.0% |
| ! | AAATCACTTTATGGAAAAAC+AGG | - | chr7_3:71787233-71787252 | None:intergenic | 25.0% |
| ! | GTATAAGGTAAATCACTTTA+TGG | - | chr7_3:71787242-71787261 | None:intergenic | 25.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | + | chr7_3:71787424-71787443 | Msa1121660:intron | 25.0% |
| !! | AAATGAGTTTTCCATACAAA+TGG | - | chr7_3:71787746-71787765 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCATTGGTATTGC+AGG | + | chr7_3:71787766-71787785 | Msa1121660:intron | 25.0% |
| !!! | TTTTTTTCATTGGTATTGCA+GGG | + | chr7_3:71787767-71787786 | Msa1121660:intron | 25.0% |
| ! | ATCGGAAAATAGATTTATAG+AGG | - | chr7_3:71787871-71787890 | None:intergenic | 25.0% |
| ! | CTATTTAGAAGTCATCATAT+CGG | - | chr7_3:71787889-71787908 | None:intergenic | 25.0% |
| ! | TCTAAATAGAGAAATATACG+AGG | + | chr7_3:71787900-71787919 | Msa1121660:intron | 25.0% |
| ! | AAGAGATGATAATTGATGAA+AGG | - | chr7_3:71788129-71788148 | None:intergenic | 25.0% |
| ! | GAAATAAATTGGAATATACC+TGG | - | chr7_3:71788226-71788245 | None:intergenic | 25.0% |
| !! | TAAGCATTTACTAGTTTGAA+TGG | - | chr7_3:71788286-71788305 | None:intergenic | 25.0% |
| ! | AATAAAATCTCACTTCGAAA+AGG | - | chr7_3:71788837-71788856 | None:intergenic | 25.0% |
| !!! | CTTGATGTACATTTTTTTCA+AGG | - | chr7_3:71788862-71788881 | None:intergenic | 25.0% |
| ! | TTAAATATGTGTCTTCTCTT+AGG | + | chr7_3:71788907-71788926 | Msa1121660:intron | 25.0% |
| ! | TAAATATGTGTCTTCTCTTA+GGG | + | chr7_3:71788908-71788927 | Msa1121660:intron | 25.0% |
| !!! | TTAAACTGACCTTTATTTTG+TGG | + | chr7_3:71788937-71788956 | Msa1121660:intron | 25.0% |
| ! | GACAAGAGAAATAAAGATAA+TGG | - | chr7_3:71789053-71789072 | None:intergenic | 25.0% |
| ! | TAAGAGTTTAGATTCTGTTA+AGG | - | chr7_3:71789085-71789104 | None:intergenic | 25.0% |
| ! | AAACTCTTAATTATTTGTGC+AGG | + | chr7_3:71789096-71789115 | Msa1121660:intron | 25.0% |
| ! | TAACTAAATGACTGTACATA+AGG | - | chr7_3:71789470-71789489 | None:intergenic | 25.0% |
| ! | TATTCTTTCTGATGATAAGT+AGG | + | chr7_3:71789603-71789622 | Msa1121660:intron | 25.0% |
| ! | AAGAAAAAGTTGACCATATT+TGG | - | chr7_3:71789666-71789685 | None:intergenic | 25.0% |
| ! | AAACTAATGTTATGACTTGA+AGG | - | chr7_3:71789700-71789719 | None:intergenic | 25.0% |
| ! | TAGTTATCAGTGTATTATGT+TGG | + | chr7_3:71789798-71789817 | Msa1121660:intron | 25.0% |
| ! | ACTTTCATCTCAAATTCATT+TGG | + | chr7_3:71789842-71789861 | Msa1121660:intron | 25.0% |
| ! | CTTTCATCTCAAATTCATTT+GGG | + | chr7_3:71789843-71789862 | Msa1121660:intron | 25.0% |
| ! | TCCATCTGTTGTTAATTTAT+TGG | + | chr7_3:71790083-71790102 | Msa1121660:three_prime_UTR | 25.0% |
| ! | TCCAATAAATTAACAACAGA+TGG | - | chr7_3:71790087-71790106 | None:intergenic | 25.0% |
| ! | CTTAAAAATATTGTGATCGA+TGG | + | chr7_3:71790207-71790226 | Msa1121660:three_prime_UTR | 25.0% |
| AAAATTGCTTATTCCGCAAA+TGG | + | chr7_3:71784866-71784885 | Msa1121660:exon | 30.0% | |
| ! | TGCTGAAATTTTCATTCCAA+CGG | + | chr7_3:71785016-71785035 | Msa1121660:intron | 30.0% |
| !! | TGTGTTGGATTTTGAAAAGA+TGG | + | chr7_3:71785511-71785530 | Msa1121660:intron | 30.0% |
| !! | TTGGATTTTGAAAAGATGGA+TGG | + | chr7_3:71785515-71785534 | Msa1121660:intron | 30.0% |
| GCGTGTAAAAATTATGTATG+AGG | + | chr7_3:71785766-71785785 | Msa1121660:intron | 30.0% | |
| GTAATGTTATTGTAAAAGGG+AGG | + | chr7_3:71785798-71785817 | Msa1121660:intron | 30.0% | |
| AAATGGTAGTAGCATGAATT+TGG | + | chr7_3:71785865-71785884 | Msa1121660:intron | 30.0% | |
| !! | ATTTTTGTGCATCTTGTTGT+AGG | + | chr7_3:71785909-71785928 | Msa1121660:intron | 30.0% |
| TTTGATTAACAAATCCAGAG+AGG | - | chr7_3:71786076-71786095 | None:intergenic | 30.0% | |
| GTGTTTGTAAAAATGATGCA+AGG | - | chr7_3:71786397-71786416 | None:intergenic | 30.0% | |
| ATTCTCTACAGTGTAATGTT+TGG | + | chr7_3:71786478-71786497 | Msa1121660:intron | 30.0% | |
| !! | TTGAGATCTTTGATTTTTCG+TGG | - | chr7_3:71786718-71786737 | None:intergenic | 30.0% |
| ACGAAAAATCAAAGATCTCA+AGG | + | chr7_3:71786717-71786736 | Msa1121660:CDS | 30.0% | |
| !! | CTTCTTTTAAGGAGAAGAAA+AGG | - | chr7_3:71786864-71786883 | None:intergenic | 30.0% |
| !! | GTTTGGCTTAACTTCTTTTA+AGG | - | chr7_3:71786875-71786894 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr7_3:71787270-71787289 | None:intergenic | 30.0% |
| TGCACACATATTAAGGAATA+TGG | - | chr7_3:71787490-71787509 | None:intergenic | 30.0% | |
| TTCCTTAATATGTGTGCAAT+TGG | + | chr7_3:71787492-71787511 | Msa1121660:intron | 30.0% | |
| ATTAGAACTTTGAATACCTC+AGG | - | chr7_3:71787681-71787700 | None:intergenic | 30.0% | |
| TAATCTTTCCCCTATGATAA+AGG | + | chr7_3:71787697-71787716 | Msa1121660:intron | 30.0% | |
| !!! | CTAGTTTTAGTCCATTTGTA+TGG | + | chr7_3:71787732-71787751 | Msa1121660:intron | 30.0% |
| ATGAAGATGAAGATGGAATA+TGG | + | chr7_3:71787986-71788005 | Msa1121660:CDS | 30.0% | |
| ! | TTGATTTTCTGTCAACATAG+AGG | - | chr7_3:71788157-71788176 | None:intergenic | 30.0% |
| ATCAAGAATCCTAACTACAA+AGG | + | chr7_3:71788172-71788191 | Msa1121660:CDS | 30.0% | |
| TCAAGAATCCTAACTACAAA+GGG | + | chr7_3:71788173-71788192 | Msa1121660:CDS | 30.0% | |
| CTTAAGCCTATCAAATATGT+CGG | + | chr7_3:71788360-71788379 | Msa1121660:CDS | 30.0% | |
| ATACAAGTCATCACTGAATT+TGG | - | chr7_3:71788421-71788440 | None:intergenic | 30.0% | |
| !!! | ACAACTTGTTTTGCATATTC+AGG | - | chr7_3:71788590-71788609 | None:intergenic | 30.0% |
| ! | CTCAATATCTAACTTGTAAG+TGG | + | chr7_3:71788669-71788688 | Msa1121660:intron | 30.0% |
| AGAGAAGACACATATTTAAG+AGG | - | chr7_3:71788906-71788925 | None:intergenic | 30.0% | |
| TACATGAACATACACTACTT+CGG | + | chr7_3:71789026-71789045 | Msa1121660:intron | 30.0% | |
| ACATAGAGACAGATATAGAA+AGG | + | chr7_3:71789189-71789208 | Msa1121660:CDS | 30.0% | |
| ATATTGATCGTATGCATGTA+TGG | - | chr7_3:71789221-71789240 | None:intergenic | 30.0% | |
| ATTTGTCTTGTCCTCAAAAA+GGG | - | chr7_3:71789276-71789295 | None:intergenic | 30.0% | |
| TATTTGTCTTGTCCTCAAAA+AGG | - | chr7_3:71789277-71789296 | None:intergenic | 30.0% | |
| AATGACATTATTAGGAATGC+TGG | - | chr7_3:71789423-71789442 | None:intergenic | 30.0% | |
| AAGTAGGATAACAGATATAG+AGG | + | chr7_3:71789619-71789638 | Msa1121660:intron | 30.0% | |
| ! | AATGTTTTCTTTTGATGTGC+AGG | + | chr7_3:71789958-71789977 | Msa1121660:intron | 30.0% |
| GGAACATACTACAAATATCA+AGG | - | chr7_3:71790066-71790085 | None:intergenic | 30.0% | |
| !!! | AACACTTGTTTTTGTACATC+AGG | - | chr7_3:71790262-71790281 | None:intergenic | 30.0% |
| ACAAATAGGACTAAGCAAGT+TGG | + | chr7_3:71785403-71785422 | Msa1121660:intron | 35.0% | |
| CAAAAAAAAGTGATGTGTGG+TGG | + | chr7_3:71785435-71785454 | Msa1121660:intron | 35.0% | |
| CAACAAGTACCTTTATCATC+TGG | - | chr7_3:71785628-71785647 | None:intergenic | 35.0% | |
| TGCAAATTAGTGAAATGCAG+TGG | + | chr7_3:71785834-71785853 | Msa1121660:intron | 35.0% | |
| GTTTGGCATCATTAGATGTT+TGG | - | chr7_3:71785938-71785957 | None:intergenic | 35.0% | |
| CTGTTCTTGTTACTGAATTC+TGG | - | chr7_3:71785984-71786003 | None:intergenic | 35.0% | |
| TTTGAACAAGAGATTGAGTG+TGG | + | chr7_3:71786032-71786051 | Msa1121660:CDS | 35.0% | |
| AAAAGAGAAGAACAACAGCA+TGG | - | chr7_3:71786330-71786349 | None:intergenic | 35.0% | |
| ATGTTTGGACCAGATTTATG+TGG | + | chr7_3:71786493-71786512 | Msa1121660:CDS | 35.0% | |
| TTACCAAGGTCAAAATTACC+CGG | + | chr7_3:71786549-71786568 | Msa1121660:CDS | 35.0% | |
| TCAAAATTACCCGGTAAAGA+AGG | + | chr7_3:71786558-71786577 | Msa1121660:CDS | 35.0% | |
| GAATATCCCAATCTGTATAC+AGG | - | chr7_3:71786690-71786709 | None:intergenic | 35.0% | |
| !! | GATCTTTGATTTTTCGTGGA+GGG | - | chr7_3:71786714-71786733 | None:intergenic | 35.0% |
| !! | AGATCTTTGATTTTTCGTGG+AGG | - | chr7_3:71786715-71786734 | None:intergenic | 35.0% |
| CAAAGATCTCAAGGCAAAAA+AGG | + | chr7_3:71786726-71786745 | Msa1121660:CDS | 35.0% | |
| ! | AAAGCACCATGTTATGCTAA+AGG | - | chr7_3:71786797-71786816 | None:intergenic | 35.0% |
| !!! | CTCTAAAGCTACTTTTGATC+TGG | + | chr7_3:71786828-71786847 | Msa1121660:intron | 35.0% |
| !! | CTTTTCTAAAAGTGGTTGAG+AGG | + | chr7_3:71786963-71786982 | Msa1121660:intron | 35.0% |
| TAAGACTCTTAAGCTACGTT+TGG | - | chr7_3:71787185-71787204 | None:intergenic | 35.0% | |
| AGCCAATTGCACACATATTA+AGG | - | chr7_3:71787497-71787516 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr7_3:71787518-71787537 | Msa1121660:intron | 35.0% |
| ACATTTAGGTCTCATTGTTG+TGG | + | chr7_3:71787549-71787568 | Msa1121660:intron | 35.0% | |
| CTCTTGTTCCTTTATCATAG+GGG | - | chr7_3:71787708-71787727 | None:intergenic | 35.0% | |
| CCTCTTGTTCCTTTATCATA+GGG | - | chr7_3:71787709-71787728 | None:intergenic | 35.0% | |
| TCCTCTTGTTCCTTTATCAT+AGG | - | chr7_3:71787710-71787729 | None:intergenic | 35.0% | |
| ! | TCTGAATTAGCCTGATAGTT+GGG | + | chr7_3:71787963-71787982 | Msa1121660:intron | 35.0% |
| ATGAAGATGGAATATGGAAG+AGG | + | chr7_3:71787992-71788011 | Msa1121660:CDS | 35.0% | |
| ! | TATGCTGGATTTGGTATCTT+TGG | - | chr7_3:71788018-71788037 | None:intergenic | 35.0% |
| ATACCAAATCCAGCATACAA+AGG | + | chr7_3:71788021-71788040 | Msa1121660:CDS | 35.0% | |
| !! | AGGTTTGTTGATAAAGTTGC+AGG | + | chr7_3:71788058-71788077 | Msa1121660:intron | 35.0% |
| ATCCTAACTACAAAGGGAAA+TGG | + | chr7_3:71788179-71788198 | Msa1121660:CDS | 35.0% | |
| TTCCATTTCCCTTTGTAGTT+AGG | - | chr7_3:71788184-71788203 | None:intergenic | 35.0% | |
| ATACCTGGATTATCAATCCA+TGG | - | chr7_3:71788211-71788230 | None:intergenic | 35.0% | |
| AGGCTTAAGCACATAAAGAT+CGG | - | chr7_3:71788349-71788368 | None:intergenic | 35.0% | |
| TCTATGCCGACATATTTGAT+AGG | - | chr7_3:71788369-71788388 | None:intergenic | 35.0% | |
| AATATGTCGGCATAGAAGTT+TGG | + | chr7_3:71788373-71788392 | Msa1121660:CDS | 35.0% | |
| !!! | TAATGCATATATTTTGGCCC+AGG | + | chr7_3:71788520-71788539 | Msa1121660:intron | 35.0% |
| !!! | TATATTTTGGCCCAGGTTAA+AGG | + | chr7_3:71788527-71788546 | Msa1121660:intron | 35.0% |
| ! | TCTAACTTGTAAGTGGCAAT+TGG | + | chr7_3:71788676-71788695 | Msa1121660:intron | 35.0% |
| ! | CTAACTTGTAAGTGGCAATT+GGG | + | chr7_3:71788677-71788696 | Msa1121660:intron | 35.0% |
| CAGCGAAAAATCAATACACA+CGG | - | chr7_3:71788742-71788761 | None:intergenic | 35.0% | |
| ! | TCTGAGATGCCACAAAATAA+AGG | - | chr7_3:71788949-71788968 | None:intergenic | 35.0% |
| ! | GATTGAAAAAGAGGCTTTTG+AGG | + | chr7_3:71788967-71788986 | Msa1121660:intron | 35.0% |
| GAAAATAAGAAAAGCCCAAG+AGG | + | chr7_3:71788997-71789016 | Msa1121660:CDS | 35.0% | |
| TAGATTCTGTTAAGGCAACA+AGG | - | chr7_3:71789077-71789096 | None:intergenic | 35.0% | |
| CTCTTAATTATTTGTGCAGG+AGG | + | chr7_3:71789099-71789118 | Msa1121660:intron | 35.0% | |
| AATAGCACAGATACTCAGAT+TGG | + | chr7_3:71789293-71789312 | Msa1121660:intron | 35.0% | |
| GATAATCATCCATGTAATCG+CGG | - | chr7_3:71789557-71789576 | None:intergenic | 35.0% | |
| !!! | CAGATATAGAGGTGTCATTT+TGG | + | chr7_3:71789630-71789649 | Msa1121660:intron | 35.0% |
| !!! | ATATAGAGGTGTCATTTTGG+TGG | + | chr7_3:71789633-71789652 | Msa1121660:intron | 35.0% |
| TGGTGGTCAATTTCCAAATA+TGG | + | chr7_3:71789650-71789669 | Msa1121660:intron | 35.0% | |
| ! | AGTGTATTATGTTGGTAGAC+TGG | + | chr7_3:71789806-71789825 | Msa1121660:intron | 35.0% |
| ! | GTGTATTATGTTGGTAGACT+GGG | + | chr7_3:71789807-71789826 | Msa1121660:intron | 35.0% |
| TGAACTCTGATGGTATAAAG+CGG | + | chr7_3:71789982-71790001 | Msa1121660:exon | 35.0% | |
| AAACTCGTGCACATTACAAT+AGG | - | chr7_3:71790154-71790173 | None:intergenic | 35.0% | |
| !!! | GTAATGTGCACGAGTTTTTT+AGG | + | chr7_3:71790157-71790176 | Msa1121660:three_prime_UTR | 35.0% |
| ATTGCTTATTCCGCAAATGG+CGG | + | chr7_3:71784869-71784888 | Msa1121660:exon | 40.0% | |
| !!! | ATCTTCGAAGAGCGTTTTGA+AGG | + | chr7_3:71784966-71784985 | Msa1121660:CDS | 40.0% |
| ! | ATGCAGTGGAGAGTACAAAA+TGG | + | chr7_3:71785848-71785867 | Msa1121660:intron | 40.0% |
| TTCTGGTATCTTTGCAGAGA+TGG | - | chr7_3:71785967-71785986 | None:intergenic | 40.0% | |
| CAGTAACAAGAACAGAACAC+TGG | + | chr7_3:71785989-71786008 | Msa1121660:CDS | 40.0% | |
| GAATGAGCAACACACCTATA+CGG | - | chr7_3:71786119-71786138 | None:intergenic | 40.0% | |
| !! | AAAGTAGAGGTCATTTTGCG+AGG | - | chr7_3:71786205-71786224 | None:intergenic | 40.0% |
| GAAGAACAACAGCATGGATA+TGG | - | chr7_3:71786324-71786343 | None:intergenic | 40.0% | |
| GTGTCTGTTCCACATAAATC+TGG | - | chr7_3:71786505-71786524 | None:intergenic | 40.0% | |
| CTTGGTAAGAGACTATGACA+TGG | - | chr7_3:71786537-71786556 | None:intergenic | 40.0% | |
| CATGTCATAGTCTCTTACCA+AGG | + | chr7_3:71786535-71786554 | Msa1121660:CDS | 40.0% | |
| !! | TTACCGGGTAATTTTGACCT+TGG | - | chr7_3:71786555-71786574 | None:intergenic | 40.0% |
| AGAACACTGTATGTAGCATC+TGG | - | chr7_3:71786637-71786656 | None:intergenic | 40.0% | |
| AGATGCTACATACAGTGTTC+TGG | + | chr7_3:71786636-71786655 | Msa1121660:CDS | 40.0% | |
| GATAATAGAGAGCGAGATTC+CGG | + | chr7_3:71786661-71786680 | Msa1121660:CDS | 40.0% | |
| CACTGTCCTTTAGCATAACA+TGG | + | chr7_3:71786788-71786807 | Msa1121660:intron | 40.0% | |
| ! | ACGTTTGGCCAGACTTATTT+TGG | - | chr7_3:71787170-71787189 | None:intergenic | 40.0% |
| ! | TTTGAAACGGAGGGAGTATA+AGG | - | chr7_3:71787257-71787276 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr7_3:71787522-71787541 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr7_3:71787522-71787541 | Msa1121660:intron | 40.0% |
| AAACGGAGGGAGTAACATTT+AGG | + | chr7_3:71787535-71787554 | Msa1121660:intron | 40.0% | |
| CCCTATGATAAAGGAACAAG+AGG | + | chr7_3:71787706-71787725 | Msa1121660:intron | 40.0% | |
| TTGGATCAGGAATTTCTGCT+GGG | - | chr7_3:71787805-71787824 | None:intergenic | 40.0% | |
| TTTGGATCAGGAATTTCTGC+TGG | - | chr7_3:71787806-71787825 | None:intergenic | 40.0% | |
| AGCAGAAATTCCTGATCCAA+AGG | + | chr7_3:71787805-71787824 | Msa1121660:CDS | 40.0% | |
| ! | CAACTAACCTCTTTAGCCTT+TGG | - | chr7_3:71787824-71787843 | None:intergenic | 40.0% |
| ! | AGGTTAGTTGAGTAGAAGAG+TGG | + | chr7_3:71787834-71787853 | Msa1121660:intron | 40.0% |
| ! | CTCTGAATTAGCCTGATAGT+TGG | + | chr7_3:71787962-71787981 | Msa1121660:intron | 40.0% |
| TCATCTTCATCCCAACTATC+AGG | - | chr7_3:71787976-71787995 | None:intergenic | 40.0% | |
| AGTTGGGATGAAGATGAAGA+TGG | + | chr7_3:71787979-71787998 | Msa1121660:CDS | 40.0% | |
| CAACAAACCTTTCGTTTCCA+TGG | - | chr7_3:71788048-71788067 | None:intergenic | 40.0% | |
| AAGGGAAATGGAAAACTCCA+TGG | + | chr7_3:71788191-71788210 | Msa1121660:CDS | 40.0% | |
| ! | ACTCCATGGATTGATAATCC+AGG | + | chr7_3:71788205-71788224 | Msa1121660:CDS | 40.0% |
| !! | CATCTTCAAACTCTGAGACA+CGG | - | chr7_3:71788323-71788342 | None:intergenic | 40.0% |
| GCTTAAGCACATAAAGATCG+GGG | - | chr7_3:71788347-71788366 | None:intergenic | 40.0% | |
| GGCTTAAGCACATAAAGATC+GGG | - | chr7_3:71788348-71788367 | None:intergenic | 40.0% | |
| CAAAAAACTCACCTCTCTGT+TGG | - | chr7_3:71788627-71788646 | None:intergenic | 40.0% | |
| !!! | CGTGTGTATTGATTTTTCGC+TGG | + | chr7_3:71788740-71788759 | Msa1121660:intron | 40.0% |
| TCTCACTTCGAAAAGGCTTA+AGG | - | chr7_3:71788830-71788849 | None:intergenic | 40.0% | |
| GGCATCTCAGATTGAAAAAG+AGG | + | chr7_3:71788958-71788977 | Msa1121660:intron | 40.0% | |
| AATAAGAAAAGCCCAAGAGG+AGG | + | chr7_3:71789000-71789019 | Msa1121660:CDS | 40.0% | |
| ATCTGTCTCTATGTCTGTCA+CGG | - | chr7_3:71789183-71789202 | None:intergenic | 40.0% | |
| ! | GAACATTCACTCCCTTTTTG+AGG | + | chr7_3:71789262-71789281 | Msa1121660:intron | 40.0% |
| ACATAAGGCTCAACTCAAAG+TGG | - | chr7_3:71789455-71789474 | None:intergenic | 40.0% | |
| ATAGGCTTTGCAACAATGCT+TGG | - | chr7_3:71790136-71790155 | None:intergenic | 40.0% | |
| !! | GAAGCATTTTCCGCCATTTG+CGG | - | chr7_3:71784882-71784901 | None:intergenic | 45.0% |
| TCAGACTGGAAAAGTAGCGA+AGG | + | chr7_3:71785556-71785575 | Msa1121660:CDS | 45.0% | |
| AAAAGTAGCGAAGGCAAAGC+CGG | + | chr7_3:71785565-71785584 | Msa1121660:CDS | 45.0% | |
| GCTGGAGATCCAGATGATAA+AGG | + | chr7_3:71785616-71785635 | Msa1121660:CDS | 45.0% | |
| ! | TGCAGAGATGGCAAAGTGTT+TGG | - | chr7_3:71785955-71785974 | None:intergenic | 45.0% |
| GAACAAGAGATTGAGTGTGG+TGG | + | chr7_3:71786035-71786054 | Msa1121660:CDS | 45.0% | |
| ! | GCTTGACCCTTGTTGTAACA+TGG | + | chr7_3:71786359-71786378 | Msa1121660:intron | 45.0% |
| ACTTGTCAGTTTCACACTGC+AGG | - | chr7_3:71786585-71786604 | None:intergenic | 45.0% | |
| CCAATCTGTATACAGGCTTC+CGG | - | chr7_3:71786683-71786702 | None:intergenic | 45.0% | |
| CGGAAGCCTGTATACAGATT+GGG | + | chr7_3:71786681-71786700 | Msa1121660:CDS | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr7_3:71787521-71787540 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr7_3:71787521-71787540 | Msa1121660:intron | 45.0% |
| CCTCAGGTTTGACAGCATTA+GGG | - | chr7_3:71787665-71787684 | None:intergenic | 45.0% | |
| ACCTCAGGTTTGACAGCATT+AGG | - | chr7_3:71787666-71787685 | None:intergenic | 45.0% | |
| TCCTGATCCAAAGGCTAAAG+AGG | + | chr7_3:71787814-71787833 | Msa1121660:CDS | 45.0% | |
| ! | ACCTCTTTAGCCTTTGGATC+AGG | - | chr7_3:71787818-71787837 | None:intergenic | 45.0% |
| GGTCCTTTGTATGCTGGATT+TGG | - | chr7_3:71788027-71788046 | None:intergenic | 45.0% | |
| ATCCAGCATACAAAGGACCA+TGG | + | chr7_3:71788028-71788047 | Msa1121660:CDS | 45.0% | |
| TTCCATGGTCCTTTGTATGC+TGG | - | chr7_3:71788033-71788052 | None:intergenic | 45.0% | |
| CAAAGGACCATGGAAACGAA+AGG | + | chr7_3:71788038-71788057 | Msa1121660:CDS | 45.0% | |
| TGCTGAGCTATTAGGCTGAA+TGG | + | chr7_3:71788477-71788496 | Msa1121660:intron | 45.0% | |
| !! | ATTTTGGCCCAGGTTAAAGG+CGG | + | chr7_3:71788530-71788549 | Msa1121660:intron | 45.0% |
| TACTGAACCGCCTTTAACCT+GGG | - | chr7_3:71788540-71788559 | None:intergenic | 45.0% | |
| ATACTGAACCGCCTTTAACC+TGG | - | chr7_3:71788541-71788560 | None:intergenic | 45.0% | |
| ! | TGAAGTGTTTGCCAACAGAG+AGG | + | chr7_3:71788613-71788632 | Msa1121660:CDS | 45.0% |
| TTCATGTACCTCCTCCTCTT+GGG | - | chr7_3:71789014-71789033 | None:intergenic | 45.0% | |
| GCTCAAAGAGCAAGAGAAGA+CGG | + | chr7_3:71789121-71789140 | Msa1121660:CDS | 45.0% | |
| ATGTGCAGGATGAACTCTGA+TGG | + | chr7_3:71789972-71789991 | Msa1121660:intron | 45.0% | |
| AAGATGGATGGCGAAGTCGT+TGG | + | chr7_3:71785527-71785546 | Msa1121660:intron | 50.0% | |
| AGATGGATGGCGAAGTCGTT+GGG | + | chr7_3:71785528-71785547 | Msa1121660:intron | 50.0% | |
| GTCGTTGGGTAAGATCAGAC+TGG | + | chr7_3:71785542-71785561 | Msa1121660:CDS | 50.0% | |
| CAAGAGATTGAGTGTGGTGG+AGG | + | chr7_3:71786038-71786057 | Msa1121660:CDS | 50.0% | |
| GGTTACATGAAGCTCCTCTC+TGG | + | chr7_3:71786059-71786078 | Msa1121660:CDS | 50.0% | |
| ACTGCAGGTCCTTCTTTACC+GGG | - | chr7_3:71786570-71786589 | None:intergenic | 50.0% | |
| CACTGCAGGTCCTTCTTTAC+CGG | - | chr7_3:71786571-71786590 | None:intergenic | 50.0% | |
| CCGGAAGCCTGTATACAGAT+TGG | + | chr7_3:71786680-71786699 | Msa1121660:CDS | 50.0% | |
| TTCTCTGTCGTCCCAATCTG+CGG | - | chr7_3:71787631-71787650 | None:intergenic | 50.0% | |
| CCCTAATGCTGTCAAACCTG+AGG | + | chr7_3:71787662-71787681 | Msa1121660:CDS | 50.0% | |
| TGTCGGCATAGAAGTTTGGC+AGG | + | chr7_3:71788377-71788396 | Msa1121660:CDS | 50.0% | |
| CTACGACGTGCTGAGCTATT+AGG | + | chr7_3:71788469-71788488 | Msa1121660:intron | 50.0% | |
| AAGAAAAGCCCAAGAGGAGG+AGG | + | chr7_3:71789003-71789022 | Msa1121660:CDS | 50.0% | |
| GTTCATGTACCTCCTCCTCT+TGG | - | chr7_3:71789015-71789034 | None:intergenic | 50.0% | |
| GAGCAAGAGAAGACGGTGAA+AGG | + | chr7_3:71789128-71789147 | Msa1121660:CDS | 50.0% | |
| CAAGAGAAGACGGTGAAAGG+CGG | + | chr7_3:71789131-71789150 | Msa1121660:CDS | 50.0% | |
| GAAAGGCGGAGAAAAGAGAG+AGG | + | chr7_3:71789145-71789164 | Msa1121660:CDS | 50.0% | |
| !! | GGAGGGAAAGCACTTGTAAG+TGG | - | chr7_3:71789520-71789539 | None:intergenic | 50.0% |
| !! | AGCCGGTTCGTTCAAGCACA+CGG | + | chr7_3:71785582-71785601 | Msa1121660:CDS | 55.0% |
| AGCCGTGTGCTTGAACGAAC+CGG | - | chr7_3:71785587-71785606 | None:intergenic | 55.0% | |
| GTTCGTTCAAGCACACGGCT+GGG | + | chr7_3:71785587-71785606 | Msa1121660:CDS | 55.0% | |
| TCAAGCACACGGCTGGGAAA+TGG | + | chr7_3:71785593-71785612 | Msa1121660:CDS | 55.0% | |
| CAAGCACACGGCTGGGAAAT+GGG | + | chr7_3:71785594-71785613 | Msa1121660:CDS | 55.0% | |
| TTGGTGGGGATACGCCGTAT+AGG | + | chr7_3:71786102-71786121 | Msa1121660:CDS | 55.0% | |
| ! | CAATCTGCGGGCTGCGAATA+GGG | - | chr7_3:71787618-71787637 | None:intergenic | 55.0% |
| CTATTCGCAGCCCGCAGATT+GGG | + | chr7_3:71787617-71787636 | Msa1121660:intron | 55.0% | |
| TCTCTGTCGTCCCAATCTGC+GGG | - | chr7_3:71787630-71787649 | None:intergenic | 55.0% | |
| GGTTCGTTCAAGCACACGGC+TGG | + | chr7_3:71785586-71785605 | Msa1121660:CDS | 60.0% | |
| ! | CCAATCTGCGGGCTGCGAAT+AGG | - | chr7_3:71787619-71787638 | None:intergenic | 60.0% |
| CCTATTCGCAGCCCGCAGAT+TGG | + | chr7_3:71787616-71787635 | Msa1121660:intron | 60.0% | |
| CGGCGATGCTGCACATAGGA+GGG | - | chr7_3:71789537-71789556 | None:intergenic | 60.0% | |
| ATCGCGGCGATGCTGCACAT+AGG | - | chr7_3:71789541-71789560 | None:intergenic | 60.0% | |
| GCAGCATCGCCGCGATTACA+TGG | + | chr7_3:71789545-71789564 | Msa1121660:intron | 60.0% | |
| GGTGTCCGAGCTCAACCACT+CGG | + | chr7_3:71789864-71789883 | Msa1121660:intron | 60.0% | |
| GTGTCCGAGCTCAACCACTC+GGG | + | chr7_3:71789865-71789884 | Msa1121660:intron | 60.0% | |
| GTAGCCCGAGTGGTTGAGCT+CGG | - | chr7_3:71789872-71789891 | None:intergenic | 60.0% | |
| ACCACTCGGGCTACGTCTAG+AGG | + | chr7_3:71789878-71789897 | Msa1121660:intron | 60.0% | |
| TCCTCTAGACGTAGCCCGAG+TGG | - | chr7_3:71789882-71789901 | None:intergenic | 60.0% | |
| CACACGGCTGGGAAATGGGC+TGG | + | chr7_3:71785598-71785617 | Msa1121660:CDS | 65.0% | |
| GCGGCGATGCTGCACATAGG+AGG | - | chr7_3:71789538-71789557 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 71784839 | 71790315 | 71784839 | ID=Msa1121660;Name=Msa1121660 |
| chr7_3 | mRNA | 71784839 | 71790315 | 71784839 | ID=Msa1121660-mRNA-1;Parent=Msa1121660;Name=Msa1121660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=46|0.92|0.86|1|0.85|0.86|15|324|411 |
| chr7_3 | exon | 71784839 | 71784987 | 71784839 | ID=Msa1121660-mRNA-1:exon:18483;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71785530 | 71785637 | 71785530 | ID=Msa1121660-mRNA-1:exon:18484;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71785931 | 71786123 | 71785931 | ID=Msa1121660-mRNA-1:exon:18485;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71786489 | 71786602 | 71786489 | ID=Msa1121660-mRNA-1:exon:18486;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71786633 | 71786747 | 71786633 | ID=Msa1121660-mRNA-1:exon:18487;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71787627 | 71787683 | 71787627 | ID=Msa1121660-mRNA-1:exon:18488;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71787788 | 71787835 | 71787788 | ID=Msa1121660-mRNA-1:exon:18489;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71787973 | 71788059 | 71787973 | ID=Msa1121660-mRNA-1:exon:18490;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71788169 | 71788226 | 71788169 | ID=Msa1121660-mRNA-1:exon:18491;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71788331 | 71788398 | 71788331 | ID=Msa1121660-mRNA-1:exon:18492;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71788542 | 71788634 | 71788542 | ID=Msa1121660-mRNA-1:exon:18493;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71788968 | 71789024 | 71788968 | ID=Msa1121660-mRNA-1:exon:18494;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71789118 | 71789210 | 71789118 | ID=Msa1121660-mRNA-1:exon:18495;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71789549 | 71789578 | 71789549 | ID=Msa1121660-mRNA-1:exon:18496;Parent=Msa1121660-mRNA-1 |
| chr7_3 | exon | 71789980 | 71790315 | 71789980 | ID=Msa1121660-mRNA-1:exon:18497;Parent=Msa1121660-mRNA-1 |
| chr7_3 | five_prime_UTR | 71784839 | 71784884 | 71784839 | ID=Msa1121660-mRNA-1:five_prime_utr;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71784885 | 71784987 | 71784885 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71785530 | 71785637 | 71785530 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71785931 | 71786123 | 71785931 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71786489 | 71786602 | 71786489 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71786633 | 71786747 | 71786633 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71787627 | 71787683 | 71787627 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71787788 | 71787835 | 71787788 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71787973 | 71788059 | 71787973 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71788169 | 71788226 | 71788169 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71788331 | 71788398 | 71788331 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71788542 | 71788634 | 71788542 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71788968 | 71789024 | 71788968 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71789118 | 71789210 | 71789118 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71789549 | 71789578 | 71789549 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | CDS | 71789980 | 71789991 | 71789980 | ID=Msa1121660-mRNA-1:cds;Parent=Msa1121660-mRNA-1 |
| chr7_3 | three_prime_UTR | 71789992 | 71790315 | 71789992 | ID=Msa1121660-mRNA-1:three_prime_utr;Parent=Msa1121660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
