AlfalfaGEDB | Msa1195750

M. sativa cultivar zhongmu-4 / Msa1195750

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195750	sp\|C0LGP4\|Y3475_ARATH	37.452	777	451	13	1	745	233	1006	2.03e-158	488
Msa1195750	sp\|C0LGP4\|Y3475_ARATH	31.978	369	234	9	1	359	89	450	4.25e-30	131
Msa1195750	sp\|C0LGP4\|Y3475_ARATH	30.709	254	171	3	129	381	72	321	1.65e-23	110
Msa1195750	sp\|C0LGP4\|Y3475_ARATH	26.632	383	222	7	32	382	71	426	5.75e-22	105
Msa1195750	sp\|C0LGP4\|Y3475_ARATH	32.105	190	128	1	174	362	66	255	3.82e-18	93.2
Msa1195750	sp\|C0LGP4\|Y3475_ARATH	31.944	144	98	0	216	359	60	203	7.46e-12	72.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195750	A0A396GR64	28.199	422	257	11	2	389	316	725	5.36e-25	123
Msa1195750	A0A396GR64	31.409	433	229	14	1	377	97	517	1.19e-28	135
Msa1195750	A0A396GR64	32.365	241	160	3	134	372	82	321	1.93e-20	108
Msa1195750	A0A396GR64	32.867	143	96	0	233	375	85	227	3.11e-11	79.3
Msa1195750	A0A396GR64	34.402	343	217	6	1	338	216	555	7.41e-33	148
Msa1195750	A0A396GR64	89.544	746	78	0	1	746	509	1254	0.0	1348

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa1195750	0.832638	8.434856e-56	-8.615850e-47
Msa0007230	Msa1195750	0.812648	3.815129e-51	-8.615850e-47
Msa0012780	Msa1195750	-0.814318	1.637362e-51	-8.615850e-47
Msa0020630	Msa1195750	0.801222	9.970747e-49	-8.615850e-47
Msa0038350	Msa1195750	-0.805856	1.090592e-49	-8.615850e-47
Msa0040580	Msa1195750	0.800186	1.622001e-48	-8.615850e-47
Msa0042410	Msa1195750	0.816281	5.994546e-52	-8.615850e-47
Msa0055280	Msa1195750	0.810704	1.009739e-50	-8.615850e-47
Msa0055590	Msa1195750	0.819966	8.797523e-53	-8.615850e-47
Msa0077390	Msa1195750	0.814702	1.346466e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195750	MtrunA17_Chr8g0363691	89.544	746	78	0	1	746	509	1254	0.0	1348
Msa1195750	MtrunA17_Chr8g0363691	34.402	343	217	6	1	338	216	555	1.43e-36	148
Msa1195750	MtrunA17_Chr8g0363691	31.409	433	229	14	1	377	97	517	2.28e-32	135
Msa1195750	MtrunA17_Chr8g0363691	28.199	422	257	11	2	389	316	725	1.03e-28	123
Msa1195750	MtrunA17_Chr8g0363691	32.365	241	160	3	134	372	82	321	3.72e-24	108
Msa1195750	MtrunA17_Chr8g0363691	32.867	143	96	0	233	375	85	227	5.99e-15	79.3
Msa1195750	MtrunA17_Chr8g0363691	30.769	156	107	1	203	358	79	233	9.23e-14	75.5
Msa1195750	MtrunA17_Chr8g0363661	90.349	746	72	0	1	746	98	843	0.0	1340
Msa1195750	MtrunA17_Chr8g0363661	32.787	366	233	8	1	359	1	360	3.99e-32	134
Msa1195750	MtrunA17_Chr8g0363661	28.302	318	189	7	105	389	3	314	1.41e-22	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195750	AT3G47570.1	37.452	777	451	13	1	745	233	1006	2.07e-159	488
Msa1195750	AT3G47570.1	31.978	369	234	9	1	359	89	450	4.32e-31	131
Msa1195750	AT3G47570.1	30.709	254	171	3	129	381	72	321	1.67e-24	110
Msa1195750	AT3G47570.1	26.632	383	222	7	32	382	71	426	5.85e-23	105
Msa1195750	AT3G47570.1	32.105	190	128	1	174	362	66	255	3.88e-19	93.2
Msa1195750	AT3G47570.1	31.944	144	98	0	216	359	60	203	7.58e-13	72.8
Msa1195750	AT3G47090.1	35.077	784	459	18	1	745	233	1005	3.29e-139	435
Msa1195750	AT3G47090.1	32.190	379	238	9	2	368	138	509	1.69e-31	132
Msa1195750	AT3G47090.1	30.199	351	206	9	43	359	82	427	1.31e-24	110
Msa1195750	AT3G47090.1	31.441	229	151	4	142	366	82	308	3.42e-20	96.7

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Find 155 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATTCTAAGGATTT+TGG	0.118040	8_1:-44066498	None:intergenic
AAAATGGCTGACACAACTAT+GGG	0.640102	8_1:-44066720	None:intergenic
AAAGCCATCCAATGTCTTGT+TGG	0.435270	8_1:+44067250	Msa1195750:CDS
AAAGGAATTGTTTCTGTCAA+AGG	0.461692	8_1:+44067562	Msa1195750:CDS
AAAGGAGATGTGTACAGCTA+TGG	0.525100	8_1:+44067580	Msa1195750:CDS
AAATCTACAACATCGAAATC+TGG	0.421454	8_1:+44067025	Msa1195750:CDS
AAATCTCCAAAAGCAATATT+GGG	0.402481	8_1:-44065697	None:intergenic
AAATCTTGATTTCAAATCAT+TGG	0.322793	8_1:+44067070	Msa1195750:CDS
AAATTTAGTCCAACTAACTG+GGG	0.688411	8_1:+44067726	Msa1195750:CDS
AAGATACAAAAGTGATTCTA+AGG	0.262171	8_1:-44066505	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTCAAGTATAGAAGTTGC+AGG	-	chr8_1:44065582-44065601	None:intergenic	30.0%
CTGGCTGACAATAATATAAA+TGG	+	chr8_1:44065964-44065983	Msa1195750:CDS	30.0%
AATATAAATGGACCAATACC+TGG	+	chr8_1:44065976-44065995	Msa1195750:CDS	30.0%
ACTACAAGGATCATTTATTG+AGG	+	chr8_1:44066050-44066069	Msa1195750:CDS	30.0%
ACTTTGTGAAATGAAGAGTT+TGG	+	chr8_1:44066074-44066093	Msa1195750:CDS	30.0%
CTTTGTGAAATGAAGAGTTT+GGG	+	chr8_1:44066075-44066094	Msa1195750:CDS	30.0%
CTAGACAATAATAAGCTTTC+TGG	+	chr8_1:44066108-44066127	Msa1195750:CDS	30.0%
TCTCTTATAAGGATAAGTGT+AGG	+	chr8_1:44066162-44066181	Msa1195750:CDS	30.0%
CTAGAATACCATTATCTCTT+TGG	+	chr8_1:44066202-44066221	Msa1195750:CDS	30.0%
TTGAAATCTGATTTCCTGAT+AGG	-	chr8_1:44066326-44066345	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	44065496	44068086	44065496	ID=Msa1195750;Name=Msa1195750
chr8_1	mRNA	44065496	44068086	44065496	ID=Msa1195750-mRNA-1;Parent=Msa1195750;Name=Msa1195750-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|1\|0.5\|1\|1\|1\|2\|183\|746
chr8_1	exon	44065496	44067383	44065496	ID=Msa1195750-mRNA-1:exon:14259;Parent=Msa1195750-mRNA-1
chr8_1	exon	44067551	44068086	44067551	ID=Msa1195750-mRNA-1:exon:14260;Parent=Msa1195750-mRNA-1
chr8_1	CDS	44065496	44067383	44065496	ID=Msa1195750-mRNA-1:cds;Parent=Msa1195750-mRNA-1
chr8_1	CDS	44067551	44067903	44067551	ID=Msa1195750-mRNA-1:cds;Parent=Msa1195750-mRNA-1
chr8_1	three_prime_UTR	44067904	44068086	44067904	ID=Msa1195750-mRNA-1:three_prime_utr;Parent=Msa1195750-mRNA-1

Gene Sequence

>Msa1195750

ATGTCATCACTCACTAGTTTGGAGGTTAATCACAATAGCCTCTCAGGCACAATTCCATCAAATACGGGATATAGCCTTCCTAGCCTGCAACTTCTATACTTGAATAATAACAATTTGGTTGGAAATATTCCAAATAACATATTCAACTCTTCTAAGCTTATTGTACTTCAATTGGAGGACAACGAATTCAGTGGAACTTTACCCAATATTGCTTTTGGAGATTTAAGGTTGCTTGAATCGTTTCGCATATATAACAACAATTTGACAATAGATGATTCTCATCAATTCTTTACTTCTTTGACAAATTGTAGATATTTGAAATATTTAGAGCTGTCAGGGAATCATATATCCAATCTTCCTAAGTCAATTGGAAATATAACTTCAGAATTCTTTCGGGCACAATCATGTGGAATTGAGGGTAATATTCCCGTAGAAGTTGGAAACATGAGCAACTTGCTAACTTTGGATCTGGCTGACAATAATATAAATGGACCAATACCTGGTACATTCAAAGGGTTGCAGAAACTTCAATATTTGAATCTTAGCAACAATGGACTACAAGGATCATTTATTGAGGAACTTTGTGAAATGAAGAGTTTGGGTGAGTTGTATCTAGACAATAATAAGCTTTCTGGAGTTTTACCAACATGTGTGGGAAATATGATTTCTCTTATAAGGATAAGTGTAGGATCTAACAGTTTAAACTCTAGAATACCATTATCTCTTTGGAGTCTTAGAGATATATTAGAGATAAATTTTTCTTCAAATTCTTTGATTGGTAATCTTCCACTTGAGATTGGGAATTTGAGAGCAATTATACTATTAGACCTATCAGGAAATCAGATTTCAAGCAACATTCCAACAACCATCAATTCCTTACAAACATTGCAGAATCTCTCCTTAGCAGATAATAAACTGAATGGATCAATTCCCAAATCACTTGGTCAAATGATAAGCTTGATCTCCTTGGACTTGTCCCAAAATATGTTAACTGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACTTCTCATATAATATATTACAAGGAGAGATTCCTGATGGTGGACATTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGCGGCGATCCTCGCCTCCAAGTACCTACATGTGGTAAGCAAGTTAAGAAATGGTCAATGGAAAAAAAGCTTATATTGAAATGCATACTTCCCATAGTTGTGTCAGCCATTTTGGTTGTTGCTTGCATCATACTTTTAAAACATAATAAAAGGAGAAAGAATGAAAACACTCTTGAAAGGGGTTTGTCAACTTTGGGAGCTCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAAATTACTTGGACGTGGGGGATTTGGCTCTGTGTATCAGGGGATGCTTCCTGATGGTGAGATGATTGCAGTCAAAGTAATTGATTTGCAATCAGAGGGAAAATCAAAGAGCTTTGATGCAGAATGCAATGCAATGAGAAATCTACAACATCGAAATCTGGTAAAGATTATTAGTAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAAATAACTATTGTCTAAATTTCTTGCAAAGGTTAAATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATCTAAAGCCATCCAATGTCTTGTTGGATGAAAATATGGTTGCACATGTAAGCGATTTTGGTATTGCCAAGCTCATGTATGAAGGACAATCTGAAACTCATACACAGACTTTGGCTACTATTGGATATCTTGCACCAGAGTATGGATCTAAAGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAATCTTTACAAGAAGAAAGCCAACAGATGATATGTTTGGTTCAGAACTAAGTTTGAAAACATGGATCAGTGGATCATTGCCTAATTCAATTATGGAGGTCATGGATTCAAATTTAGTCCAACTAACTGGGGACCAAATTGATGATATATTGACTCACATGTCATCTATTTTTAGTTTAGCCCTGAGTTGTTGTGAAGATTCACCTGAAGCAAGAATCAATATGGCAGATGTTATTGCGTCGCTAATTAAGATCAAGGCTTTGGTTCTTGGCGCAAACAGGATCTAG

Protein sequence

>Msa1195750

MSSLTSLEVNHNSLSGTIPSNTGYSLPSLQLLYLNNNNLVGNIPNNIFNSSKLIVLQLEDNEFSGTLPNIAFGDLRLLESFRIYNNNLTIDDSHQFFTSLTNCRYLKYLELSGNHISNLPKSIGNITSEFFRAQSCGIEGNIPVEVGNMSNLLTLDLADNNINGPIPGTFKGLQKLQYLNLSNNGLQGSFIEELCEMKSLGELYLDNNKLSGVLPTCVGNMISLIRISVGSNSLNSRIPLSLWSLRDILEINFSSNSLIGNLPLEIGNLRAIILLDLSGNQISSNIPTTINSLQTLQNLSLADNKLNGSIPKSLGQMISLISLDLSQNMLTGVIPKSLESLLYLQNINFSYNILQGEIPDGGHFKNFTAQSFMHNEALCGDPRLQVPTCGKQVKKWSMEKKLILKCILPIVVSAILVVACIILLKHNKRRKNENTLERGLSTLGAPRRISYYELVQATNGFNESKLLGRGGFGSVYQGMLPDGEMIAVKVIDLQSEGKSKSFDAECNAMRNLQHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSNNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLMYEGQSETHTQTLATIGYLAPEYGSKGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFGSELSLKTWISGSLPNSIMEVMDSNLVQLTGDQIDDILTHMSSIFSLALSCCEDSPEARINMADVIASLIKIKALVLGANRI*