Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455670 | XP_024634971.2 | 89.480 | 865 | 58 | 3 | 1 | 865 | 1 | 832 | 0.0 | 1566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455670 | sp|P31542|CLPAB_SOLLC | 51.336 | 861 | 294 | 9 | 1 | 793 | 104 | 907 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455670 | A0A396ISH8 | 88.555 | 865 | 57 | 4 | 1 | 865 | 14 | 836 | 0.0 | 1542 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201070 | Msa0455670 | 0.814957 | 1.182466e-51 | -8.615850e-47 |
| Msa0411510 | Msa0455670 | 0.875370 | 3.251710e-68 | -8.615850e-47 |
| Msa0455670 | Msa0486590 | 0.900744 | 5.391543e-78 | -8.615850e-47 |
| Msa0455670 | Msa0486600 | 0.993064 | 3.210695e-197 | -8.615850e-47 |
| Msa0455670 | Msa0519000 | 0.802493 | 5.466038e-49 | -8.615850e-47 |
| Msa0455670 | Msa1261250 | 0.801279 | 9.705395e-49 | -8.615850e-47 |
| Msa0258760 | Msa0455670 | 0.814900 | 1.217189e-51 | -8.615850e-47 |
| Msa0363890 | Msa0455670 | 0.981562 | 6.824595e-153 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455670 | MtrunA17_Chr3g0102771 | 88.555 | 865 | 57 | 4 | 1 | 865 | 14 | 836 | 0.0 | 1542 |
| Msa0455670 | MtrunA17_Chr8g0385811 | 51.163 | 860 | 297 | 10 | 1 | 793 | 108 | 911 | 0.0 | 808 |
| Msa0455670 | MtrunA17_Chr3g0134631 | 50.814 | 860 | 300 | 10 | 1 | 793 | 109 | 912 | 0.0 | 801 |
| Msa0455670 | MtrunA17_Chr3g0131711 | 48.907 | 869 | 321 | 11 | 1 | 802 | 104 | 916 | 0.0 | 770 |
| Msa0455670 | MtrunA17_Chr6g0454071 | 48.910 | 321 | 161 | 1 | 467 | 784 | 617 | 937 | 7.36e-102 | 338 |
| Msa0455670 | MtrunA17_Chr6g0454071 | 34.842 | 442 | 261 | 7 | 29 | 447 | 44 | 481 | 2.91e-66 | 239 |
| Msa0455670 | MtrunA17_Chr7g0218421 | 48.632 | 329 | 158 | 3 | 463 | 784 | 617 | 941 | 2.50e-101 | 337 |
| Msa0455670 | MtrunA17_Chr7g0218421 | 47.431 | 253 | 131 | 2 | 197 | 447 | 233 | 485 | 4.98e-66 | 238 |
| Msa0455670 | MtrunA17_Chr3g0131351 | 47.059 | 340 | 169 | 4 | 463 | 793 | 616 | 953 | 7.40e-101 | 335 |
| Msa0455670 | MtrunA17_Chr3g0131351 | 33.544 | 474 | 272 | 5 | 3 | 462 | 115 | 559 | 1.97e-69 | 248 |
| Msa0455670 | MtrunA17_Chr4g0061371 | 47.205 | 322 | 165 | 3 | 462 | 781 | 534 | 852 | 4.55e-99 | 329 |
| Msa0455670 | MtrunA17_Chr4g0061371 | 35.821 | 402 | 233 | 8 | 69 | 447 | 5 | 404 | 7.58e-64 | 231 |
| Msa0455670 | MtrunA17_Chr3g0137071 | 46.769 | 325 | 169 | 1 | 463 | 783 | 625 | 949 | 6.48e-98 | 328 |
| Msa0455670 | MtrunA17_Chr3g0137071 | 49.407 | 253 | 126 | 2 | 197 | 447 | 241 | 493 | 5.20e-70 | 250 |
| Msa0455670 | MtrunA17_Chr7g0225161 | 43.562 | 365 | 200 | 4 | 434 | 796 | 506 | 866 | 1.77e-92 | 311 |
| Msa0455670 | MtrunA17_Chr7g0225161 | 35.821 | 402 | 233 | 9 | 69 | 447 | 5 | 404 | 2.44e-61 | 224 |
| Msa0455670 | MtrunA17_Chr3g0135231 | 37.455 | 550 | 196 | 14 | 1 | 480 | 95 | 566 | 1.92e-91 | 302 |
| Msa0455670 | MtrunA17_Chr3g0135231 | 44.068 | 118 | 65 | 1 | 593 | 710 | 534 | 650 | 1.50e-20 | 97.1 |
| Msa0455670 | MtrunA17_Chr2g0329561 | 40.498 | 321 | 183 | 3 | 471 | 790 | 143 | 456 | 9.26e-76 | 255 |
| Msa0455670 | MtrunA17_Chr2g0277781 | 41.724 | 290 | 158 | 4 | 471 | 757 | 2 | 283 | 3.43e-72 | 239 |
| Msa0455670 | MtrunA17_Chr1g0188061 | 65.882 | 85 | 29 | 0 | 560 | 644 | 233 | 317 | 3.13e-29 | 120 |
| Msa0455670 | MtrunA17_Chr1g0188061 | 35.043 | 117 | 73 | 1 | 9 | 125 | 8 | 121 | 1.76e-15 | 79.0 |
| Msa0455670 | MtrunA17_Chr7g0260931 | 46.429 | 84 | 45 | 0 | 468 | 551 | 11 | 94 | 3.25e-20 | 86.3 |
| Msa0455670 | MtrunA17_Chr2g0277771 | 34.559 | 136 | 79 | 4 | 648 | 781 | 1 | 128 | 5.26e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455670 | AT5G50920.1 | 51.047 | 860 | 297 | 11 | 1 | 793 | 107 | 909 | 0.0 | 809 |
| Msa0455670 | AT3G48870.2 | 48.293 | 820 | 323 | 12 | 69 | 793 | 86 | 899 | 0.0 | 737 |
| Msa0455670 | AT3G48870.2 | 46.212 | 132 | 68 | 1 | 1 | 132 | 96 | 224 | 5.06e-23 | 105 |
| Msa0455670 | AT3G48870.1 | 48.293 | 820 | 323 | 12 | 69 | 793 | 117 | 930 | 0.0 | 736 |
| Msa0455670 | AT3G48870.1 | 46.212 | 132 | 68 | 1 | 1 | 132 | 127 | 255 | 5.17e-23 | 105 |
| Msa0455670 | AT3G48870.4 | 48.293 | 820 | 323 | 12 | 69 | 793 | 117 | 930 | 0.0 | 736 |
| Msa0455670 | AT3G48870.4 | 46.212 | 132 | 68 | 1 | 1 | 132 | 127 | 255 | 5.17e-23 | 105 |
| Msa0455670 | AT3G48870.3 | 48.293 | 820 | 323 | 12 | 69 | 793 | 117 | 930 | 0.0 | 736 |
| Msa0455670 | AT3G48870.3 | 46.212 | 132 | 68 | 1 | 1 | 132 | 127 | 255 | 5.17e-23 | 105 |
| Msa0455670 | AT5G51070.1 | 37.643 | 874 | 420 | 13 | 3 | 791 | 94 | 927 | 0.0 | 567 |
| Msa0455670 | AT5G15450.1 | 48.598 | 321 | 163 | 1 | 466 | 784 | 614 | 934 | 6.78e-102 | 338 |
| Msa0455670 | AT5G15450.1 | 38.684 | 380 | 203 | 7 | 93 | 447 | 105 | 479 | 8.17e-68 | 244 |
| Msa0455670 | AT2G25140.1 | 48.615 | 325 | 163 | 2 | 463 | 783 | 616 | 940 | 2.56e-100 | 334 |
| Msa0455670 | AT2G25140.1 | 49.012 | 253 | 127 | 2 | 197 | 447 | 232 | 484 | 3.28e-70 | 251 |
| Msa0455670 | AT1G74310.1 | 48.418 | 316 | 158 | 3 | 468 | 781 | 537 | 849 | 3.96e-99 | 330 |
| Msa0455670 | AT1G74310.1 | 35.572 | 402 | 234 | 8 | 69 | 447 | 5 | 404 | 1.65e-63 | 231 |
| Msa0455670 | AT1G74310.2 | 49.821 | 279 | 135 | 3 | 468 | 744 | 537 | 812 | 1.02e-89 | 302 |
| Msa0455670 | AT1G74310.2 | 35.572 | 402 | 234 | 8 | 69 | 447 | 5 | 404 | 6.20e-64 | 231 |
| Msa0455670 | AT4G14670.1 | 36.387 | 393 | 210 | 7 | 67 | 446 | 3 | 368 | 1.70e-64 | 228 |
| Msa0455670 | AT4G14670.1 | 48.819 | 127 | 65 | 0 | 462 | 588 | 496 | 622 | 3.90e-33 | 136 |
| Msa0455670 | AT3G45450.1 | 34.211 | 342 | 172 | 13 | 69 | 393 | 4 | 309 | 1.26e-39 | 150 |
| Msa0455670 | AT3G45450.1 | 46.377 | 69 | 34 | 1 | 3 | 71 | 16 | 81 | 4.32e-11 | 65.9 |
Find 135 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTAGCTACAAACTATTT+TGG | 0.166362 | 3_3:-48691194 | Msa0455670:CDS |
| CTTCAATCTTGTCTTCAATT+TGG | 0.192716 | 3_3:+48693032 | None:intergenic |
| TTTCATTGACATTTAGGTTT+AGG | 0.195139 | 3_3:-48690659 | Msa0455670:CDS |
| TTCAACATGTTATTTCTTCT+TGG | 0.203026 | 3_3:-48691436 | Msa0455670:CDS |
| TTCATTGACATTTAGGTTTA+GGG | 0.218363 | 3_3:-48690658 | Msa0455670:CDS |
| TACATCTTTCATTGACATTT+AGG | 0.220547 | 3_3:-48690665 | Msa0455670:CDS |
| TTGTATAATTTATAACTATA+TGG | 0.249293 | 3_3:-48690181 | Msa0455670:three_prime_UTR |
| CACAGTGCAGCTAGATTAAT+TGG | 0.252437 | 3_3:-48691122 | Msa0455670:CDS |
| GGACACAATGCACCTACTTT+TGG | 0.267605 | 3_3:-48693298 | Msa0455670:CDS |
| CATATACTACTTGGGATTCT+TGG | 0.268673 | 3_3:-48694027 | Msa0455670:CDS |
| CTTGCAATAGTCCTTCTTAA+TGG | 0.273975 | 3_3:+48690591 | None:intergenic |
| GATGGTTCAACCACTTTAAC+TGG | 0.293201 | 3_3:+48691896 | None:intergenic |
| GTTTGTCTTGTAAAGATATA+AGG | 0.297746 | 3_3:-48693897 | Msa0455670:CDS |
| AGGGATTATGTGATTCAAAA+TGG | 0.298678 | 3_3:-48690639 | Msa0455670:CDS |
| GAAACCATAGAAATTCTTAA+AGG | 0.304814 | 3_3:-48691866 | Msa0455670:CDS |
| ATCAAATCAATTGCCTTATC+AGG | 0.314089 | 3_3:+48691641 | None:intergenic |
| GTCAATTAACCGAAGCTATT+CGG | 0.314183 | 3_3:-48691064 | Msa0455670:CDS |
| CTACTCCAGGTTCTCCTATA+AGG | 0.314863 | 3_3:+48692544 | None:intergenic |
| AGCTAATGCATTGGCTAATT+CGG | 0.325948 | 3_3:+48691208 | None:intergenic |
| GAGGCCTTTAAGAATTTCTA+TGG | 0.327315 | 3_3:+48691862 | None:intergenic |
| CATGCATGACAAATAAAATA+AGG | 0.347704 | 3_3:+48690129 | None:intergenic |
| CGATCGTTTCTTACCTGATA+AGG | 0.357419 | 3_3:-48691654 | Msa0455670:CDS |
| TTCATGTTCACCGGTCCTTC+AGG | 0.371875 | 3_3:-48691242 | Msa0455670:CDS |
| GGGATTCTTGGTGATTCAAA+TGG | 0.372242 | 3_3:-48694015 | Msa0455670:CDS |
| CTTGAATTACACCTCTTTCA+AGG | 0.373725 | 3_3:+48692089 | None:intergenic |
| TGCTCTTCCCTTCCCACAAA+AGG | 0.384525 | 3_3:+48692618 | None:intergenic |
| AGTAATTATGGCTGCACAAA+AGG | 0.386618 | 3_3:-48694088 | None:intergenic |
| CATGTTATTTCTTCTTGGAT+TGG | 0.389250 | 3_3:-48691431 | Msa0455670:CDS |
| ATGCTACAAATTCTTGATGA+TGG | 0.390372 | 3_3:-48690975 | Msa0455670:CDS |
| ATTATAATGACTAGCAATCT+TGG | 0.395448 | 3_3:-48690903 | Msa0455670:CDS |
| TTGACCGCCGTCACGGAAAC+CGG | 0.402934 | 3_3:+48691082 | None:intergenic |
| ATATTCAATGCAGCAACATC+AGG | 0.405896 | 3_3:-48692145 | Msa0455670:CDS |
| TGGAATTTCATGCAATTTGA+TGG | 0.409908 | 3_3:-48690304 | Msa0455670:CDS |
| TTGTGCTAATTTAGTCAGAT+TGG | 0.426578 | 3_3:+48692865 | None:intergenic |
| TATAAACAAAACTAGAGAAC+AGG | 0.432422 | 3_3:-48693217 | Msa0455670:intron |
| TGATTCAGATAATTTGTAGA+AGG | 0.432682 | 3_3:-48692584 | Msa0455670:CDS |
| GATGTTAAGGAAAGAAATAA+AGG | 0.443438 | 3_3:-48690541 | Msa0455670:CDS |
| TTGAAACATGCCCTTGAAAG+AGG | 0.447531 | 3_3:-48692100 | Msa0455670:CDS |
| GGTAGAGGTGGTGGTTGTAG+TGG | 0.448297 | 3_3:-48693919 | Msa0455670:CDS |
| AATATTTCAACCAGTTAAAG+TGG | 0.449508 | 3_3:-48691906 | Msa0455670:CDS |
| TGATGGAGAGAGAAAAGATA+TGG | 0.451204 | 3_3:-48690328 | Msa0455670:CDS |
| CGAATTTCTCCGAATAGCTT+CGG | 0.452426 | 3_3:+48691055 | None:intergenic |
| CCTTGCCTTATAGGAGAACC+TGG | 0.452712 | 3_3:-48692549 | Msa0455670:CDS |
| ATTGATTTGATTGATGAAGC+TGG | 0.454157 | 3_3:-48691629 | Msa0455670:CDS |
| CATTGGCTGAAAAGATGTTA+AGG | 0.458668 | 3_3:-48690554 | Msa0455670:CDS |
| GTGAACATGAAACTTGCAAT+AGG | 0.461655 | 3_3:+48691254 | None:intergenic |
| AGCACAGAACATATACTACT+TGG | 0.463548 | 3_3:-48694036 | Msa0455670:CDS |
| TAGGGAGCAAGTGATGAAGT+TGG | 0.470468 | 3_3:-48693944 | Msa0455670:CDS |
| CTTGGTAACAACATTATTGA+AGG | 0.473402 | 3_3:-48690885 | Msa0455670:CDS |
| TCACGGAAACCGGCATAGCC+AGG | 0.477017 | 3_3:+48691092 | None:intergenic |
| AAGTTGGTTGGTAGAGGTGG+TGG | 0.480856 | 3_3:-48693928 | Msa0455670:CDS |
| GGAATTTCATGCAATTTGAT+GGG | 0.482208 | 3_3:-48690303 | Msa0455670:CDS |
| GCAACTTATATATATAGTTA+TGG | 0.484707 | 3_3:+48690246 | None:intergenic |
| TCCTTTGGTACATCACTGAC+TGG | 0.488002 | 3_3:+48691404 | None:intergenic |
| GGCTATGCCGGTTTCCGTGA+CGG | 0.488783 | 3_3:-48691089 | Msa0455670:CDS |
| TTGAATTACACCTCTTTCAA+GGG | 0.490421 | 3_3:+48692090 | None:intergenic |
| TCTTGGTGATTCAAATGGGT+TGG | 0.490997 | 3_3:-48694010 | Msa0455670:CDS |
| AGATTAATTGGAGCACCTCC+TGG | 0.491051 | 3_3:-48691110 | Msa0455670:CDS |
| CAAAAGGAAGCTAGGTTTGT+GGG | 0.498140 | 3_3:-48694072 | Msa0455670:CDS |
| GGATTCTTGGTGATTCAAAT+GGG | 0.503736 | 3_3:-48694014 | Msa0455670:CDS |
| AAGAATCAAGTGTTTAATCA+AGG | 0.508788 | 3_3:-48692218 | Msa0455670:CDS |
| ATAGTTTGTAGCTAATGCAT+TGG | 0.510870 | 3_3:+48691199 | None:intergenic |
| ATTAGATATGAGTGAGTACA+TGG | 0.518212 | 3_3:-48691150 | Msa0455670:CDS |
| GGTGATTCAAATGGGTTGGC+TGG | 0.521182 | 3_3:-48694006 | Msa0455670:CDS |
| AGAACTAACAAAATTGGAAG+TGG | 0.523751 | 3_3:-48690745 | Msa0455670:CDS |
| ATTTGTCTCAGCAATATGTA+AGG | 0.523988 | 3_3:-48691775 | Msa0455670:intron |
| AATGGATATAATCCTAGCTA+TGG | 0.526824 | 3_3:-48690621 | Msa0455670:CDS |
| GGAGCACCTCCTGGCTATGC+CGG | 0.527334 | 3_3:-48691101 | Msa0455670:CDS |
| GCTCTTCCCTTCCCACAAAA+GGG | 0.527466 | 3_3:+48692619 | None:intergenic |
| CTTATAGGAGAACCTGGAGT+AGG | 0.527810 | 3_3:-48692543 | Msa0455670:CDS |
| TCTATGGTTTCTTCAACAGA+TGG | 0.528707 | 3_3:+48691878 | None:intergenic |
| GTTGGTGATTATTTAGCTGA+TGG | 0.528783 | 3_3:-48690345 | Msa0455670:CDS |
| GTTGGTGATTATTTAGCTGA+TGG | 0.528783 | 3_3:-48690405 | Msa0455670:CDS |
| TTATTCTTAGAACCTTCTGC+AGG | 0.529542 | 3_3:+48693064 | None:intergenic |
| ATTGCAAGTTTCATGTTCAC+CGG | 0.535119 | 3_3:-48691251 | Msa0455670:CDS |
| GAAGCATGTCTTCTAAATTG+AGG | 0.535628 | 3_3:+48691366 | None:intergenic |
| GGAAGACTCACAGATGGAAA+AGG | 0.536149 | 3_3:-48690954 | Msa0455670:CDS |
| GGAGAGAGAAAAGATATGGT+TGG | 0.539804 | 3_3:-48690324 | Msa0455670:CDS |
| TGGCTGCACAAAAGGAAGCT+AGG | 0.541854 | 3_3:-48694080 | Msa0455670:CDS |
| CTCAAACATGCAAAATCTCT+AGG | 0.547170 | 3_3:-48693838 | Msa0455670:intron |
| ACTCAAGTGATTCAAAATCA+AGG | 0.548883 | 3_3:-48693246 | Msa0455670:CDS |
| TCTGTTGATCATTCAGATGT+TGG | 0.553274 | 3_3:-48690363 | Msa0455670:CDS |
| TCTGTTGATCATTCAGATGT+TGG | 0.553274 | 3_3:-48690423 | Msa0455670:CDS |
| TCTGACTAAATTAGCACAAG+AGG | 0.556922 | 3_3:-48692861 | Msa0455670:intron |
| ACGAATCGCTCGGCAGATTG+TGG | 0.558075 | 3_3:+48691310 | None:intergenic |
| CAAAATGTATGCGAAACTGC+GGG | 0.559742 | 3_3:+48692120 | None:intergenic |
| CCAGGTTCTCCTATAAGGCA+AGG | 0.561002 | 3_3:+48692549 | None:intergenic |
| TGTTCAACTTTGTCATGCAA+AGG | 0.564537 | 3_3:-48691600 | Msa0455670:intron |
| TTATAGGAGAACCTGGAGTA+GGG | 0.567197 | 3_3:-48692542 | Msa0455670:CDS |
| GTGATGAAGTTGGTTGGTAG+AGG | 0.569417 | 3_3:-48693934 | Msa0455670:CDS |
| TGTGGGAAGGGAAGAGCAGG+TGG | 0.570916 | 3_3:-48692613 | Msa0455670:CDS |
| AATGGTCTAGCACCATAGCT+AGG | 0.571100 | 3_3:+48690609 | None:intergenic |
| CGGTTAATTGACCGCCGTCA+CGG | 0.572693 | 3_3:+48691075 | None:intergenic |
| GAGCAAGTGATGAAGTTGGT+TGG | 0.572864 | 3_3:-48693940 | Msa0455670:CDS |
| TCAGGTGGTTGCATTGGACG+TGG | 0.573331 | 3_3:-48692284 | Msa0455670:intron |
| ATGAAGTTGGTTGGTAGAGG+TGG | 0.573783 | 3_3:-48693931 | Msa0455670:CDS |
| CATGGTGATGTTACTGCAGA+AGG | 0.574349 | 3_3:-48692998 | Msa0455670:CDS |
| CTTGAAGCAACCCCAAAAGT+AGG | 0.575361 | 3_3:+48693286 | None:intergenic |
| TGTCGTCTTTCTTAGCACCT+AGG | 0.575495 | 3_3:+48692927 | None:intergenic |
| GTTGATATCAATGTTGATGA+GGG | 0.577273 | 3_3:-48690501 | Msa0455670:CDS |
| AGTGATGTACCAAAGGAAGA+AGG | 0.581553 | 3_3:-48691398 | Msa0455670:CDS |
| TTGGTAACAACATTATTGAA+GGG | 0.582740 | 3_3:-48690884 | Msa0455670:CDS |
| TTAAGGAAAGAAATAAAGGA+AGG | 0.583157 | 3_3:-48690537 | Msa0455670:CDS |
| GCACAGAACATATACTACTT+GGG | 0.584965 | 3_3:-48694035 | Msa0455670:CDS |
| ACAAAAGGAAGCTAGGTTTG+TGG | 0.588969 | 3_3:-48694073 | Msa0455670:CDS |
| TATTCAATGCAGCAACATCA+GGG | 0.590971 | 3_3:-48692144 | Msa0455670:CDS |
| ACCAGTCAGTGATGTACCAA+AGG | 0.593951 | 3_3:-48691405 | Msa0455670:CDS |
| CAGGTTCTCCTATAAGGCAA+GGG | 0.602718 | 3_3:+48692550 | None:intergenic |
| GATGATGGAAGACTCACAGA+TGG | 0.603024 | 3_3:-48690960 | Msa0455670:CDS |
| TTGTCTCAAAACAGTAACCT+AGG | 0.603488 | 3_3:-48692944 | Msa0455670:CDS |
| GCATGTCTTCTAAATTGAGG+AGG | 0.605380 | 3_3:+48691369 | None:intergenic |
| ATGCTTCACAAACACGTCAT+CGG | 0.606617 | 3_3:-48691350 | Msa0455670:CDS |
| TGTTGATATCAATGTTGATG+AGG | 0.608337 | 3_3:-48690502 | Msa0455670:CDS |
| CTCTAGCACGACGAATCGCT+CGG | 0.613183 | 3_3:+48691300 | None:intergenic |
| TTCACCGGTCCTTCAGGCGT+AGG | 0.614407 | 3_3:-48691236 | Msa0455670:CDS |
| GGGAAAACATCAATCATACA+AGG | 0.619938 | 3_3:-48692522 | Msa0455670:CDS |
| ATGGTGCTAGACCATTAAGA+AGG | 0.621925 | 3_3:-48690602 | Msa0455670:CDS |
| CATGGTGATGTACCTGCAGA+AGG | 0.622169 | 3_3:-48693076 | Msa0455670:CDS |
| GCGATTCGTCGTGCTAGAGT+CGG | 0.623561 | 3_3:-48691296 | Msa0455670:CDS |
| TGCCCCAGGTTATGATCATG+TGG | 0.625186 | 3_3:-48693319 | Msa0455670:intron |
| TCAAAATGTATGCGAAACTG+CGG | 0.625657 | 3_3:+48692119 | None:intergenic |
| ATCAAGGAAATTGAACTAAG+CGG | 0.638205 | 3_3:-48692202 | Msa0455670:CDS |
| GAATGAGCACAGAATGCACA+TGG | 0.644675 | 3_3:-48691951 | Msa0455670:CDS |
| TCGGTCTAAGAAACTGCAGA+AGG | 0.646351 | 3_3:-48691277 | Msa0455670:CDS |
| GCTTCAAGGGTCTAATAGTG+TGG | 0.648352 | 3_3:-48693271 | Msa0455670:CDS |
| ATTGAAGAAAATGTTCACCA+TGG | 0.649931 | 3_3:-48693016 | Msa0455670:CDS |
| ATTGAAGAAAATGTTCACCA+TGG | 0.649931 | 3_3:-48693094 | Msa0455670:CDS |
| ATTCAATGCAGCAACATCAG+GGG | 0.673350 | 3_3:-48692143 | Msa0455670:CDS |
| AATGCGACTCATATGTTCCG+CGG | 0.684640 | 3_3:+48691840 | None:intergenic |
| GAAATTCTTAAAGGCCTCCG+CGG | 0.691862 | 3_3:-48691857 | Msa0455670:CDS |
| TATGCCGGTTTCCGTGACGG+CGG | 0.702517 | 3_3:-48691086 | Msa0455670:CDS |
| CGGAAACCGGCATAGCCAGG+AGG | 0.705177 | 3_3:+48691095 | None:intergenic |
| GCGACTCATATGTTCCGCGG+AGG | 0.708714 | 3_3:+48691843 | None:intergenic |
| CTTCTGCAGGTACATCACCA+TGG | 0.722270 | 3_3:+48693077 | None:intergenic |
| CTTCTGCAGTAACATCACCA+TGG | 0.731974 | 3_3:+48692999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTATAATTTATAACTATA+TGG | - | chr3_3:48694043-48694062 | Msa0455670:CDS | 10.0% |
| !!! | AATTGATTTTAATGTTAGTA+GGG | - | chr3_3:48690262-48690281 | Msa0455670:exon | 15.0% |
| !!! | ATGATTTACTTGAATTTTTA+TGG | + | chr3_3:48690510-48690529 | None:intergenic | 15.0% |
| !!! | TAATAATTACTTTGTTTTTC+AGG | - | chr3_3:48691922-48691941 | Msa0455670:CDS | 15.0% |
| !! | TAGTATATATGACTAATTAT+TGG | + | chr3_3:48692208-48692227 | None:intergenic | 15.0% |
| !! | ATTTATAATTCTCAAATGTT+TGG | - | chr3_3:48692675-48692694 | Msa0455670:intron | 15.0% |
| !! | TATTGATCATAAAAAGAATT+TGG | - | chr3_3:48693386-48693405 | Msa0455670:intron | 15.0% |
| !!! | TTTTAAAGAACTAACAAAAT+TGG | - | chr3_3:48693473-48693492 | Msa0455670:intron | 15.0% |
| !!! | GAATTGATTTTAATGTTAGT+AGG | - | chr3_3:48690261-48690280 | Msa0455670:exon | 20.0% |
| !!! | GTTAGAATATATGTTTTGAT+TGG | + | chr3_3:48690488-48690507 | None:intergenic | 20.0% |
| !! | AGTTAATCCTTAAAATTGAA+GGG | + | chr3_3:48690623-48690642 | None:intergenic | 20.0% |
| !! | AAGTTAATCCTTAAAATTGA+AGG | + | chr3_3:48690624-48690643 | None:intergenic | 20.0% |
| !!! | TCAAAGGTAATTTTTCTTTA+GGG | + | chr3_3:48690764-48690783 | None:intergenic | 20.0% |
| !!! | ATCAAAGGTAATTTTTCTTT+AGG | + | chr3_3:48690765-48690784 | None:intergenic | 20.0% |
| !! | AAAGAAAAATTACCTTTGAT+TGG | - | chr3_3:48690765-48690784 | Msa0455670:CDS | 20.0% |
| !! | AAGAAAAATTACCTTTGATT+GGG | - | chr3_3:48690766-48690785 | Msa0455670:CDS | 20.0% |
| !! | ATAGAGTGAAAGAAATTAAT+TGG | + | chr3_3:48690862-48690881 | None:intergenic | 20.0% |
| !! | CAAATATACACTATATACAA+AGG | + | chr3_3:48692243-48692262 | None:intergenic | 20.0% |
| !!! | TGGTTGAAATATTCTTTTTA+AGG | + | chr3_3:48692311-48692330 | None:intergenic | 20.0% |
| !! | AAATGTTTGGATTAATCAAA+TGG | - | chr3_3:48692688-48692707 | Msa0455670:intron | 20.0% |
| !! | AATGTTTGGATTAATCAAAT+GGG | - | chr3_3:48692689-48692708 | Msa0455670:intron | 20.0% |
| !! | TCATAAAAAGAATTTGGTTA+TGG | - | chr3_3:48693392-48693411 | Msa0455670:intron | 20.0% |
| !! | TGAATCCAAAAAATGTTAAA+AGG | - | chr3_3:48693760-48693779 | Msa0455670:intron | 20.0% |
| !! | GAATCCAAAAAATGTTAAAA+GGG | - | chr3_3:48693761-48693780 | Msa0455670:intron | 20.0% |
| !! | GCAACTTATATATATAGTTA+TGG | + | chr3_3:48693981-48694000 | None:intergenic | 20.0% |
| ! | GGAAAAATTCTTAAGTCTTA+TGG | - | chr3_3:48690239-48690258 | Msa0455670:three_prime_UTR | 25.0% |
| ! | GTTTGTCTTGTAAAGATATA+AGG | - | chr3_3:48690327-48690346 | Msa0455670:CDS | 25.0% |
| ! | AAAGAGATAGAAAAATGTGA+AGG | + | chr3_3:48690451-48690470 | None:intergenic | 25.0% |
| !!! | TCATTTTGAAAAGCATTCAT+AGG | + | chr3_3:48690731-48690750 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTAGGGAAATCAA+AGG | + | chr3_3:48690754-48690773 | None:intergenic | 25.0% |
| ! | TATAAACAAAACTAGAGAAC+AGG | - | chr3_3:48691007-48691026 | Msa0455670:CDS | 25.0% |
| !! | TTTCACATTCTCATACTTTT+TGG | - | chr3_3:48691418-48691437 | Msa0455670:CDS | 25.0% |
| ! | TCAAATAAGCCAATTCAAAT+AGG | + | chr3_3:48691470-48691489 | None:intergenic | 25.0% |
| !!! | TTTTGTACGCTCTTTTTTAT+AGG | - | chr3_3:48691572-48691591 | Msa0455670:intron | 25.0% |
| !!! | TTTGTACGCTCTTTTTTATA+GGG | - | chr3_3:48691573-48691592 | Msa0455670:intron | 25.0% |
| !! | TGATTCAGATAATTTGTAGA+AGG | - | chr3_3:48691640-48691659 | Msa0455670:CDS | 25.0% |
| !!! | TAATTACTTTGTTTTTCAGG+TGG | - | chr3_3:48691925-48691944 | Msa0455670:CDS | 25.0% |
| !! | ATCAAATCAAGAATTTTCAG+AGG | - | chr3_3:48691982-48692001 | Msa0455670:intron | 25.0% |
| ! | AAGAATCAAGTGTTTAATCA+AGG | - | chr3_3:48692006-48692025 | Msa0455670:intron | 25.0% |
| !! | AAGAATTTTCTCTTGAAACT+TGG | - | chr3_3:48692159-48692178 | Msa0455670:CDS | 25.0% |
| ! | AATATTTCAACCAGTTAAAG+TGG | - | chr3_3:48692318-48692337 | Msa0455670:intron | 25.0% |
| ! | GAAACCATAGAAATTCTTAA+AGG | - | chr3_3:48692358-48692377 | Msa0455670:intron | 25.0% |
| ! | TATAATACATGTTGCAGAAT+TGG | + | chr3_3:48692506-48692525 | None:intergenic | 25.0% |
| !! | TCTTTTTGTTCTGTTTCAAA+AGG | + | chr3_3:48692729-48692748 | None:intergenic | 25.0% |
| !!! | TTTTGAAACAGAACAAAAAG+AGG | - | chr3_3:48692728-48692747 | Msa0455670:intron | 25.0% |
| !! | TTTGAAACAGAACAAAAAGA+GGG | - | chr3_3:48692729-48692748 | Msa0455670:intron | 25.0% |
| !!! | TTCAACATGTTATTTCTTCT+TGG | - | chr3_3:48692788-48692807 | Msa0455670:intron | 25.0% |
| ! | ATTATAATGACTAGCAATCT+TGG | - | chr3_3:48693321-48693340 | Msa0455670:intron | 25.0% |
| !! | TTGGTAACAACATTATTGAA+GGG | - | chr3_3:48693340-48693359 | Msa0455670:intron | 25.0% |
| ! | TAAAAAGAATTTGGTTATGG+AGG | - | chr3_3:48693395-48693414 | Msa0455670:intron | 25.0% |
| ! | AGAAGTTTGTGAAAAAATGA+TGG | - | chr3_3:48693527-48693546 | Msa0455670:intron | 25.0% |
| ! | TACATCTTTCATTGACATTT+AGG | - | chr3_3:48693559-48693578 | Msa0455670:intron | 25.0% |
| !! | TTTCATTGACATTTAGGTTT+AGG | - | chr3_3:48693565-48693584 | Msa0455670:intron | 25.0% |
| !! | TTCATTGACATTTAGGTTTA+GGG | - | chr3_3:48693566-48693585 | Msa0455670:intron | 25.0% |
| ! | GATGTTAAGGAAAGAAATAA+AGG | - | chr3_3:48693683-48693702 | Msa0455670:intron | 25.0% |
| ! | TTAAGGAAAGAAATAAAGGA+AGG | - | chr3_3:48693687-48693706 | Msa0455670:intron | 25.0% |
| !! | TCTTCCCTTTTAACATTTTT+TGG | + | chr3_3:48693768-48693787 | None:intergenic | 25.0% |
| !! | CAAAGTACCCTTCAATTTTA+AGG | - | chr3_3:48690613-48690632 | Msa0455670:CDS | 30.0% |
| ! | TTATTTGGTTTCCCAATCAA+AGG | + | chr3_3:48690780-48690799 | None:intergenic | 30.0% |
| ACTCAAGTGATTCAAAATCA+AGG | - | chr3_3:48690978-48690997 | Msa0455670:CDS | 30.0% | |
| ATTGAAGAAAATGTTCACCA+TGG | - | chr3_3:48691130-48691149 | Msa0455670:CDS | 30.0% | |
| CTTCAATCTTGTCTTCAATT+TGG | + | chr3_3:48691117-48691136 | None:intergenic | 30.0% | |
| ATTGAAGAAAATGTTCACCA+TGG | - | chr3_3:48691130-48691149 | Msa0455670:CDS | 30.0% | |
| TTGTGCTAATTTAGTCAGAT+TGG | + | chr3_3:48691362-48691381 | None:intergenic | 30.0% | |
| ATATGTTCCTGAAAAACTCA+AGG | - | chr3_3:48691749-48691768 | Msa0455670:intron | 30.0% | |
| TATGTTCCTGAAAAACTCAA+GGG | - | chr3_3:48691750-48691769 | Msa0455670:intron | 30.0% | |
| ! | GATACCGTGATTTAAGTTAA+AGG | + | chr3_3:48691898-48691917 | None:intergenic | 30.0% |
| ATCAAGGAAATTGAACTAAG+CGG | - | chr3_3:48692022-48692041 | Msa0455670:intron | 30.0% | |
| TTGAATTACACCTCTTTCAA+GGG | + | chr3_3:48692137-48692156 | None:intergenic | 30.0% | |
| GACTAATGTGTGAAATGTAA+AGG | + | chr3_3:48692186-48692205 | None:intergenic | 30.0% | |
| ATTTGTCTCAGCAATATGTA+AGG | - | chr3_3:48692449-48692468 | Msa0455670:intron | 30.0% | |
| ATCAAATCAATTGCCTTATC+AGG | + | chr3_3:48692586-48692605 | None:intergenic | 30.0% | |
| !! | ATTGATTTGATTGATGAAGC+TGG | - | chr3_3:48692595-48692614 | Msa0455670:CDS | 30.0% |
| TGTCATGCAAAGGTAAAAAA+TGG | - | chr3_3:48692634-48692653 | Msa0455670:intron | 30.0% | |
| TTGAAACAGAACAAAAAGAG+GGG | - | chr3_3:48692730-48692749 | Msa0455670:intron | 30.0% | |
| !!! | ATATCACACTTTTTCACACT+AGG | + | chr3_3:48692769-48692788 | None:intergenic | 30.0% |
| !! | CATGTTATTTCTTCTTGGAT+TGG | - | chr3_3:48692793-48692812 | Msa0455670:intron | 30.0% |
| ! | ATAGTTTGTAGCTAATGCAT+TGG | + | chr3_3:48693028-48693047 | None:intergenic | 30.0% |
| ! | GCATTAGCTACAAACTATTT+TGG | - | chr3_3:48693030-48693049 | Msa0455670:CDS | 30.0% |
| ATTAGATATGAGTGAGTACA+TGG | - | chr3_3:48693074-48693093 | Msa0455670:CDS | 30.0% | |
| ATGCTACAAATTCTTGATGA+TGG | - | chr3_3:48693249-48693268 | Msa0455670:CDS | 30.0% | |
| ! | CTTGGTAACAACATTATTGA+AGG | - | chr3_3:48693339-48693358 | Msa0455670:intron | 30.0% |
| AGAACTAACAAAATTGGAAG+TGG | - | chr3_3:48693479-48693498 | Msa0455670:intron | 30.0% | |
| AGGGATTATGTGATTCAAAA+TGG | - | chr3_3:48693585-48693604 | Msa0455670:intron | 30.0% | |
| AATGGATATAATCCTAGCTA+TGG | - | chr3_3:48693603-48693622 | Msa0455670:intron | 30.0% | |
| ! | AAGGACTATTGCAAGATTTT+TGG | - | chr3_3:48693641-48693660 | Msa0455670:intron | 30.0% |
| !! | AAGATTTTTGGAAGACACAT+TGG | - | chr3_3:48693653-48693672 | Msa0455670:intron | 30.0% |
| TGTTGATATCAATGTTGATG+AGG | - | chr3_3:48693722-48693741 | Msa0455670:intron | 30.0% | |
| ! | GTTGATATCAATGTTGATGA+GGG | - | chr3_3:48693723-48693742 | Msa0455670:intron | 30.0% |
| TGGAATTTCATGCAATTTGA+TGG | - | chr3_3:48693920-48693939 | Msa0455670:CDS | 30.0% | |
| GGAATTTCATGCAATTTGAT+GGG | - | chr3_3:48693921-48693940 | Msa0455670:CDS | 30.0% | |
| CAATTTGATGGGAAAAATGT+TGG | - | chr3_3:48693932-48693951 | Msa0455670:CDS | 30.0% | |
| AGCACAGAACATATACTACT+TGG | - | chr3_3:48690188-48690207 | Msa0455670:three_prime_UTR | 35.0% | |
| GCACAGAACATATACTACTT+GGG | - | chr3_3:48690189-48690208 | Msa0455670:three_prime_UTR | 35.0% | |
| CATATACTACTTGGGATTCT+TGG | - | chr3_3:48690197-48690216 | Msa0455670:three_prime_UTR | 35.0% | |
| ! | GGATTCTTGGTGATTCAAAT+GGG | - | chr3_3:48690210-48690229 | Msa0455670:three_prime_UTR | 35.0% |
| CTCAAACATGCAAAATCTCT+AGG | - | chr3_3:48690386-48690405 | Msa0455670:CDS | 35.0% | |
| AACTTTATCTACATGTGAGC+AGG | - | chr3_3:48691084-48691103 | Msa0455670:CDS | 35.0% | |
| TTATTCTTAGAACCTTCTGC+AGG | + | chr3_3:48691163-48691182 | None:intergenic | 35.0% | |
| TTGTCTCAAAACAGTAACCT+AGG | - | chr3_3:48691280-48691299 | Msa0455670:CDS | 35.0% | |
| ! | AAGTCTGCTCTTGAGATTTT+TGG | - | chr3_3:48691334-48691353 | Msa0455670:CDS | 35.0% |
| TCTGACTAAATTAGCACAAG+AGG | - | chr3_3:48691363-48691382 | Msa0455670:CDS | 35.0% | |
| CTAAATTAGCACAAGAGGTA+TGG | - | chr3_3:48691368-48691387 | Msa0455670:CDS | 35.0% | |
| TACCTAGCAAATACTAATCG+AGG | - | chr3_3:48691444-48691463 | Msa0455670:CDS | 35.0% | |
| TAATCGAGGCCTATTTGAAT+TGG | - | chr3_3:48691458-48691477 | Msa0455670:CDS | 35.0% | |
| GTATTGTTTGGATGAGCTTA+TGG | - | chr3_3:48691508-48691527 | Msa0455670:intron | 35.0% | |
| AAAAACAACCCTTGCCTTAT+AGG | - | chr3_3:48691666-48691685 | Msa0455670:intron | 35.0% | |
| GGGAAAACATCAATCATACA+AGG | - | chr3_3:48691702-48691721 | Msa0455670:intron | 35.0% | |
| ATGTTCCTGAAAAACTCAAG+GGG | - | chr3_3:48691751-48691770 | Msa0455670:intron | 35.0% | |
| ! | TTTTTCCCCTTGAGTTTTTC+AGG | + | chr3_3:48691759-48691778 | None:intergenic | 35.0% |
| TGAAAAACTCAAGGGGAAAA+AGG | - | chr3_3:48691758-48691777 | Msa0455670:intron | 35.0% | |
| GTTCAATTATTGAGCAGCAA+CGG | - | chr3_3:48691872-48691891 | Msa0455670:CDS | 35.0% | |
| ! | ACGGCCTTTAACTTAAATCA+CGG | - | chr3_3:48691891-48691910 | Msa0455670:CDS | 35.0% |
| ATATTCAATGCAGCAACATC+AGG | - | chr3_3:48692079-48692098 | Msa0455670:intron | 35.0% | |
| TATTCAATGCAGCAACATCA+GGG | - | chr3_3:48692080-48692099 | Msa0455670:intron | 35.0% | |
| TCAAAATGTATGCGAAACTG+CGG | + | chr3_3:48692108-48692127 | None:intergenic | 35.0% | |
| CTTGAATTACACCTCTTTCA+AGG | + | chr3_3:48692138-48692157 | None:intergenic | 35.0% | |
| TCTATGGTTTCTTCAACAGA+TGG | + | chr3_3:48692349-48692368 | None:intergenic | 35.0% | |
| ! | GAGGCCTTTAAGAATTTCTA+TGG | + | chr3_3:48692365-48692384 | None:intergenic | 35.0% |
| TGTTCAACTTTGTCATGCAA+AGG | - | chr3_3:48692624-48692643 | Msa0455670:CDS | 35.0% | |
| GAAGCATGTCTTCTAAATTG+AGG | + | chr3_3:48692861-48692880 | None:intergenic | 35.0% | |
| GTGAACATGAAACTTGCAAT+AGG | + | chr3_3:48692973-48692992 | None:intergenic | 35.0% | |
| ATTGCAAGTTTCATGTTCAC+CGG | - | chr3_3:48692973-48692992 | Msa0455670:CDS | 35.0% | |
| !! | AGCTAATGCATTGGCTAATT+CGG | + | chr3_3:48693019-48693038 | None:intergenic | 35.0% |
| GTCAATTAACCGAAGCTATT+CGG | - | chr3_3:48693160-48693179 | Msa0455670:intron | 35.0% | |
| ! | TCAAGTCGATTCAAAAACTC+TGG | + | chr3_3:48693441-48693460 | None:intergenic | 35.0% |
| CTTGCAATAGTCCTTCTTAA+TGG | + | chr3_3:48693636-48693655 | None:intergenic | 35.0% | |
| ! | CATTGGCTGAAAAGATGTTA+AGG | - | chr3_3:48693670-48693689 | Msa0455670:intron | 35.0% |
| TCTGTTGATCATTCAGATGT+TGG | - | chr3_3:48693801-48693820 | Msa0455670:intron | 35.0% | |
| !! | GTTGGTGATTATTTAGCTGA+TGG | - | chr3_3:48693819-48693838 | Msa0455670:intron | 35.0% |
| TCTGTTGATCATTCAGATGT+TGG | - | chr3_3:48693801-48693820 | Msa0455670:intron | 35.0% | |
| !! | GTTGGTGATTATTTAGCTGA+TGG | - | chr3_3:48693819-48693838 | Msa0455670:intron | 35.0% |
| TGATGGAGAGAGAAAAGATA+TGG | - | chr3_3:48693836-48693855 | Msa0455670:intron | 35.0% | |
| ACAAAAGGAAGCTAGGTTTG+TGG | - | chr3_3:48690151-48690170 | Msa0455670:three_prime_UTR | 40.0% | |
| CAAAAGGAAGCTAGGTTTGT+GGG | - | chr3_3:48690152-48690171 | Msa0455670:three_prime_UTR | 40.0% | |
| ! | GGGATTCTTGGTGATTCAAA+TGG | - | chr3_3:48690209-48690228 | Msa0455670:three_prime_UTR | 40.0% |
| ! | TCTTGGTGATTCAAATGGGT+TGG | - | chr3_3:48690214-48690233 | Msa0455670:three_prime_UTR | 40.0% |
| TGTCCACATGATCATAACCT+GGG | + | chr3_3:48690911-48690930 | None:intergenic | 40.0% | |
| !! | GACACAATGCACCTACTTTT+GGG | - | chr3_3:48690927-48690946 | Msa0455670:CDS | 40.0% |
| !! | ACACAATGCACCTACTTTTG+GGG | - | chr3_3:48690928-48690947 | Msa0455670:CDS | 40.0% |
| !!! | TACTTTTGGGGTTGCTTCAA+GGG | - | chr3_3:48690940-48690959 | Msa0455670:CDS | 40.0% |
| ! | TAGCACAAGAGGTATGGTAA+TGG | - | chr3_3:48691374-48691393 | Msa0455670:CDS | 40.0% |
| ! | GGTAAACTTCACCCTTTTGT+GGG | - | chr3_3:48691594-48691613 | Msa0455670:intron | 40.0% |
| TTATAGGAGAACCTGGAGTA+GGG | - | chr3_3:48691682-48691701 | Msa0455670:intron | 40.0% | |
| ! | ATTGATGTTTTCCCTACTCC+AGG | + | chr3_3:48691696-48691715 | None:intergenic | 40.0% |
| ! | CTTGCTCAGAGAATTTTGAG+TGG | - | chr3_3:48691726-48691745 | Msa0455670:intron | 40.0% |
| ACCTATTCGTTACTTAGTGC+TGG | - | chr3_3:48691802-48691821 | Msa0455670:CDS | 40.0% | |
| ACCAGCACTAAGTAACGAAT+AGG | + | chr3_3:48691806-48691825 | None:intergenic | 40.0% | |
| TGCTGGTATTGTGAAATTCG+TGG | - | chr3_3:48691819-48691838 | Msa0455670:CDS | 40.0% | |
| !!! | TGTTTTTCAGGTGGTTGCAT+TGG | - | chr3_3:48691934-48691953 | Msa0455670:CDS | 40.0% |
| ATTCAATGCAGCAACATCAG+GGG | - | chr3_3:48692081-48692100 | Msa0455670:intron | 40.0% | |
| CAAAATGTATGCGAAACTGC+GGG | + | chr3_3:48692107-48692126 | None:intergenic | 40.0% | |
| TTGAAACATGCCCTTGAAAG+AGG | - | chr3_3:48692124-48692143 | Msa0455670:CDS | 40.0% | |
| GATGGTTCAACCACTTTAAC+TGG | + | chr3_3:48692331-48692350 | None:intergenic | 40.0% | |
| CGATCGTTTCTTACCTGATA+AGG | - | chr3_3:48692570-48692589 | Msa0455670:CDS | 40.0% | |
| AGTGATGTACCAAAGGAAGA+AGG | - | chr3_3:48692826-48692845 | Msa0455670:intron | 40.0% | |
| GCATGTCTTCTAAATTGAGG+AGG | + | chr3_3:48692858-48692877 | None:intergenic | 40.0% | |
| ATGCTTCACAAACACGTCAT+CGG | - | chr3_3:48692874-48692893 | Msa0455670:CDS | 40.0% | |
| CACAGTGCAGCTAGATTAAT+TGG | - | chr3_3:48693102-48693121 | Msa0455670:CDS | 40.0% | |
| CGAATTTCTCCGAATAGCTT+CGG | + | chr3_3:48693172-48693191 | None:intergenic | 40.0% | |
| ! | ATGGTGCTAGACCATTAAGA+AGG | - | chr3_3:48693622-48693641 | Msa0455670:intron | 40.0% |
| GGAGAGAGAAAAGATATGGT+TGG | - | chr3_3:48693900-48693919 | Msa0455670:CDS | 40.0% | |
| GGAAAAATGTTGGACATGCT+TGG | - | chr3_3:48693942-48693961 | Msa0455670:CDS | 40.0% | |
| TAGGGAGCAAGTGATGAAGT+TGG | - | chr3_3:48690280-48690299 | Msa0455670:CDS | 45.0% | |
| ! | GAGCAAGTGATGAAGTTGGT+TGG | - | chr3_3:48690284-48690303 | Msa0455670:CDS | 45.0% |
| !! | GTGATGAAGTTGGTTGGTAG+AGG | - | chr3_3:48690290-48690309 | Msa0455670:CDS | 45.0% |
| !! | ATGAAGTTGGTTGGTAGAGG+TGG | - | chr3_3:48690293-48690312 | Msa0455670:CDS | 45.0% |
| GGGGCATAACAAACTATGTG+AGG | + | chr3_3:48690891-48690910 | None:intergenic | 45.0% | |
| !! | CACATAGTTTGTTATGCCCC+AGG | - | chr3_3:48690891-48690910 | Msa0455670:CDS | 45.0% |
| GTCCACATGATCATAACCTG+GGG | + | chr3_3:48690910-48690929 | None:intergenic | 45.0% | |
| GTGTCCACATGATCATAACC+TGG | + | chr3_3:48690912-48690931 | None:intergenic | 45.0% | |
| ! | GGACACAATGCACCTACTTT+TGG | - | chr3_3:48690926-48690945 | Msa0455670:CDS | 45.0% |
| CTTGAAGCAACCCCAAAAGT+AGG | + | chr3_3:48690941-48690960 | None:intergenic | 45.0% | |
| !!! | CTACTTTTGGGGTTGCTTCA+AGG | - | chr3_3:48690939-48690958 | Msa0455670:CDS | 45.0% |
| GCTTCAAGGGTCTAATAGTG+TGG | - | chr3_3:48690953-48690972 | Msa0455670:CDS | 45.0% | |
| CTTCTGCAGTAACATCACCA+TGG | + | chr3_3:48691228-48691247 | None:intergenic | 45.0% | |
| ! | CATGGTGATGTTACTGCAGA+AGG | - | chr3_3:48691226-48691245 | Msa0455670:CDS | 45.0% |
| TGTCGTCTTTCTTAGCACCT+AGG | + | chr3_3:48691300-48691319 | None:intergenic | 45.0% | |
| GGCCTCGATTAGTATTTGCT+AGG | + | chr3_3:48691449-48691468 | None:intergenic | 45.0% | |
| CTAGCACCTGTCGTATTGTT+TGG | - | chr3_3:48691496-48691515 | Msa0455670:intron | 45.0% | |
| GCTCATCCAAACAATACGAC+AGG | + | chr3_3:48691505-48691524 | None:intergenic | 45.0% | |
| ! | GGGTAAACTTCACCCTTTTG+TGG | - | chr3_3:48691593-48691612 | Msa0455670:intron | 45.0% |
| ! | AACTTCACCCTTTTGTGGGA+AGG | - | chr3_3:48691598-48691617 | Msa0455670:intron | 45.0% |
| ! | ACTTCACCCTTTTGTGGGAA+GGG | - | chr3_3:48691599-48691618 | Msa0455670:intron | 45.0% |
| CAGGTTCTCCTATAAGGCAA+GGG | + | chr3_3:48691677-48691696 | None:intergenic | 45.0% | |
| CTACTCCAGGTTCTCCTATA+AGG | + | chr3_3:48691683-48691702 | None:intergenic | 45.0% | |
| CTTATAGGAGAACCTGGAGT+AGG | - | chr3_3:48691681-48691700 | Msa0455670:intron | 45.0% | |
| GAATGAGCACAGAATGCACA+TGG | - | chr3_3:48692273-48692292 | Msa0455670:CDS | 45.0% | |
| GAAATTCTTAAAGGCCTCCG+CGG | - | chr3_3:48692367-48692386 | Msa0455670:intron | 45.0% | |
| AATGCGACTCATATGTTCCG+CGG | + | chr3_3:48692387-48692406 | None:intergenic | 45.0% | |
| ACCAGTCAGTGATGTACCAA+AGG | - | chr3_3:48692819-48692838 | Msa0455670:intron | 45.0% | |
| TCCTTTGGTACATCACTGAC+TGG | + | chr3_3:48692823-48692842 | None:intergenic | 45.0% | |
| ! | AGGTTTTCGCCTTCTTCCTT+TGG | + | chr3_3:48692838-48692857 | None:intergenic | 45.0% |
| TCGGTCTAAGAAACTGCAGA+AGG | - | chr3_3:48692947-48692966 | Msa0455670:CDS | 45.0% | |
| ! | AGATTAATTGGAGCACCTCC+TGG | - | chr3_3:48693114-48693133 | Msa0455670:CDS | 45.0% |
| !! | GATGATGGAAGACTCACAGA+TGG | - | chr3_3:48693264-48693283 | Msa0455670:CDS | 45.0% |
| GGAAGACTCACAGATGGAAA+AGG | - | chr3_3:48693270-48693289 | Msa0455670:CDS | 45.0% | |
| AATGGTCTAGCACCATAGCT+AGG | + | chr3_3:48693618-48693637 | None:intergenic | 45.0% | |
| !! | TATTTAAACAAAAATAAATA+AGG | + | chr3_3:48690685-48690704 | None:intergenic | 5.0% |
| !!! | AAAAATTAATTCATTTTATT+TGG | + | chr3_3:48690795-48690814 | None:intergenic | 5.0% |
| TGGCTGCACAAAAGGAAGCT+AGG | - | chr3_3:48690144-48690163 | Msa0455670:three_prime_UTR | 50.0% | |
| !! | GGTGATTCAAATGGGTTGGC+TGG | - | chr3_3:48690218-48690237 | Msa0455670:three_prime_UTR | 50.0% |
| !! | AAGTTGGTTGGTAGAGGTGG+TGG | - | chr3_3:48690296-48690315 | Msa0455670:CDS | 50.0% |
| TGCCCCAGGTTATGATCATG+TGG | - | chr3_3:48690905-48690924 | Msa0455670:CDS | 50.0% | |
| CTTCTGCAGGTACATCACCA+TGG | + | chr3_3:48691150-48691169 | None:intergenic | 50.0% | |
| ! | CATGGTGATGTACCTGCAGA+AGG | - | chr3_3:48691148-48691167 | Msa0455670:CDS | 50.0% |
| GCTCTTCCCTTCCCACAAAA+GGG | + | chr3_3:48691608-48691627 | None:intergenic | 50.0% | |
| TGCTCTTCCCTTCCCACAAA+AGG | + | chr3_3:48691609-48691628 | None:intergenic | 50.0% | |
| ! | TTTTGTGGGAAGGGAAGAGC+AGG | - | chr3_3:48691608-48691627 | Msa0455670:CDS | 50.0% |
| CCAGGTTCTCCTATAAGGCA+AGG | + | chr3_3:48691678-48691697 | None:intergenic | 50.0% | |
| CCTTGCCTTATAGGAGAACC+TGG | - | chr3_3:48691675-48691694 | Msa0455670:intron | 50.0% | |
| TTCATGTTCACCGGTCCTTC+AGG | - | chr3_3:48692982-48693001 | Msa0455670:CDS | 50.0% | |
| ! | TTTTCCTACGCCTGAAGGAC+CGG | + | chr3_3:48692995-48693014 | None:intergenic | 50.0% |
| ! | TCGGTTTTTCCTACGCCTGA+AGG | + | chr3_3:48693000-48693019 | None:intergenic | 50.0% |
| ! | GGTAGAGGTGGTGGTTGTAG+TGG | - | chr3_3:48690305-48690324 | Msa0455670:CDS | 55.0% |
| TCAGGTGGTTGCATTGGACG+TGG | - | chr3_3:48691940-48691959 | Msa0455670:CDS | 55.0% | |
| ACGAATCGCTCGGCAGATTG+TGG | + | chr3_3:48692917-48692936 | None:intergenic | 55.0% | |
| CTCTAGCACGACGAATCGCT+CGG | + | chr3_3:48692927-48692946 | None:intergenic | 55.0% | |
| GCGATTCGTCGTGCTAGAGT+CGG | - | chr3_3:48692928-48692947 | Msa0455670:CDS | 55.0% | |
| CGGTTAATTGACCGCCGTCA+CGG | + | chr3_3:48693152-48693171 | None:intergenic | 55.0% | |
| TGTGGGAAGGGAAGAGCAGG+TGG | - | chr3_3:48691611-48691630 | Msa0455670:CDS | 60.0% | |
| GCGACTCATATGTTCCGCGG+AGG | + | chr3_3:48692384-48692403 | None:intergenic | 60.0% | |
| TTCACCGGTCCTTCAGGCGT+AGG | - | chr3_3:48692988-48693007 | Msa0455670:CDS | 60.0% | |
| TCACGGAAACCGGCATAGCC+AGG | + | chr3_3:48693135-48693154 | None:intergenic | 60.0% | |
| !! | GGCTATGCCGGTTTCCGTGA+CGG | - | chr3_3:48693135-48693154 | Msa0455670:intron | 60.0% |
| !! | TATGCCGGTTTCCGTGACGG+CGG | - | chr3_3:48693138-48693157 | Msa0455670:intron | 60.0% |
| TTGACCGCCGTCACGGAAAC+CGG | + | chr3_3:48693145-48693164 | None:intergenic | 60.0% | |
| ! | GGAGCACCTCCTGGCTATGC+CGG | - | chr3_3:48693123-48693142 | Msa0455670:intron | 65.0% |
| CGGAAACCGGCATAGCCAGG+AGG | + | chr3_3:48693132-48693151 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 48690143 | 48694103 | 48690143 | ID=Msa0455670;Name=Msa0455670 |
| chr3_3 | mRNA | 48690143 | 48694103 | 48690143 | ID=Msa0455670-mRNA-1;Parent=Msa0455670;Name=Msa0455670-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0.71|0.62|1|1|1|8|120|865 |
| chr3_3 | exon | 48690143 | 48691507 | 48690143 | ID=Msa0455670-mRNA-1:exon:9165;Parent=Msa0455670-mRNA-1 |
| chr3_3 | exon | 48691601 | 48691676 | 48691601 | ID=Msa0455670-mRNA-1:exon:9164;Parent=Msa0455670-mRNA-1 |
| chr3_3 | exon | 48691776 | 48691993 | 48691776 | ID=Msa0455670-mRNA-1:exon:9163;Parent=Msa0455670-mRNA-1 |
| chr3_3 | exon | 48692090 | 48692302 | 48692090 | ID=Msa0455670-mRNA-1:exon:9162;Parent=Msa0455670-mRNA-1 |
| chr3_3 | exon | 48692467 | 48692652 | 48692467 | ID=Msa0455670-mRNA-1:exon:9161;Parent=Msa0455670-mRNA-1 |
| chr3_3 | exon | 48692862 | 48693140 | 48692862 | ID=Msa0455670-mRNA-1:exon:9160;Parent=Msa0455670-mRNA-1 |
| chr3_3 | exon | 48693218 | 48693333 | 48693218 | ID=Msa0455670-mRNA-1:exon:9159;Parent=Msa0455670-mRNA-1 |
| chr3_3 | exon | 48693839 | 48694103 | 48693839 | ID=Msa0455670-mRNA-1:exon:9158;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48693839 | 48694103 | 48693839 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48693218 | 48693333 | 48693218 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48692862 | 48693140 | 48692862 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48692467 | 48692652 | 48692467 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48692090 | 48692302 | 48692090 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48691776 | 48691993 | 48691776 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48691601 | 48691676 | 48691601 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | CDS | 48690263 | 48691507 | 48690263 | ID=Msa0455670-mRNA-1:cds;Parent=Msa0455670-mRNA-1 |
| chr3_3 | three_prime_UTR | 48690143 | 48690262 | 48690143 | ID=Msa0455670-mRNA-1:three_prime_utr;Parent=Msa0455670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
