Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363890 | KEH34100.1 | 75.933 | 777 | 101 | 4 | 5 | 744 | 83 | 810 | 0.0 | 1144 |
| Msa0363890 | KEH34100.1 | 85.470 | 117 | 17 | 0 | 1 | 117 | 1 | 117 | 2.77e-51 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363890 | sp|P31542|CLPAB_SOLLC | 48.958 | 768 | 262 | 10 | 5 | 672 | 170 | 907 | 0.0 | 664 |
| Msa0363890 | sp|P31542|CLPAB_SOLLC | 47.664 | 107 | 53 | 1 | 1 | 107 | 91 | 194 | 1.21e-19 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363890 | A0A072V7F1 | 75.933 | 777 | 101 | 4 | 5 | 744 | 83 | 810 | 0.0 | 1144 |
| Msa0363890 | A0A072V7F1 | 85.470 | 117 | 17 | 0 | 1 | 117 | 1 | 117 | 1.33e-51 | 203 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201070 | Msa0363890 | 0.830723 | 2.501453e-55 | -8.615850e-47 |
| Msa0258760 | Msa0363890 | 0.826326 | 2.884284e-54 | -8.615850e-47 |
| Msa0323080 | Msa0363890 | 0.806278 | 8.888934e-50 | -8.615850e-47 |
| Msa0344830 | Msa0363890 | 0.810166 | 1.319565e-50 | -8.615850e-47 |
| Msa0363890 | Msa0411510 | 0.864148 | 1.497228e-64 | -8.615850e-47 |
| Msa0363890 | Msa0455670 | 0.981562 | 6.824595e-153 | -8.615850e-47 |
| Msa0363890 | Msa0486590 | 0.883041 | 6.274139e-71 | -8.615850e-47 |
| Msa0363890 | Msa0486600 | 0.981157 | 6.547865e-152 | -8.615850e-47 |
| Msa0363890 | Msa0519000 | 0.809279 | 2.046844e-50 | -8.615850e-47 |
| Msa0363890 | Msa0992490 | -0.800046 | 1.732079e-48 | -8.615850e-47 |
| Msa0363890 | Msa0999960 | -0.800564 | 1.358545e-48 | -8.615850e-47 |
| Msa0363890 | Msa1261250 | 0.812144 | 4.914446e-51 | -8.615850e-47 |
| Msa0363890 | Msa1451620 | -0.812450 | 4.213622e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363890 | MtrunA17_Chr3g0102771 | 85.870 | 644 | 33 | 3 | 101 | 744 | 251 | 836 | 0.0 | 1103 |
| Msa0363890 | MtrunA17_Chr3g0102771 | 85.470 | 117 | 17 | 0 | 1 | 117 | 1 | 117 | 2.76e-55 | 204 |
| Msa0363890 | MtrunA17_Chr8g0385811 | 48.307 | 768 | 267 | 10 | 5 | 672 | 174 | 911 | 0.0 | 653 |
| Msa0363890 | MtrunA17_Chr8g0385811 | 47.664 | 107 | 53 | 1 | 1 | 107 | 95 | 198 | 9.64e-21 | 97.8 |
| Msa0363890 | MtrunA17_Chr3g0134631 | 47.656 | 768 | 272 | 10 | 5 | 672 | 175 | 912 | 0.0 | 645 |
| Msa0363890 | MtrunA17_Chr3g0134631 | 48.598 | 107 | 52 | 1 | 1 | 107 | 96 | 199 | 6.77e-21 | 98.2 |
| Msa0363890 | MtrunA17_Chr3g0131711 | 45.946 | 777 | 290 | 13 | 5 | 681 | 170 | 916 | 0.0 | 613 |
| Msa0363890 | MtrunA17_Chr3g0131711 | 47.664 | 107 | 53 | 1 | 1 | 107 | 91 | 194 | 8.66e-21 | 97.8 |
| Msa0363890 | MtrunA17_Chr6g0454071 | 48.910 | 321 | 161 | 1 | 346 | 663 | 617 | 937 | 8.79e-103 | 337 |
| Msa0363890 | MtrunA17_Chr6g0454071 | 39.912 | 228 | 106 | 3 | 101 | 326 | 283 | 481 | 2.29e-40 | 159 |
| Msa0363890 | MtrunA17_Chr7g0218421 | 48.632 | 329 | 158 | 3 | 342 | 663 | 617 | 941 | 1.87e-102 | 337 |
| Msa0363890 | MtrunA17_Chr7g0218421 | 31.548 | 336 | 163 | 6 | 24 | 326 | 184 | 485 | 1.10e-40 | 160 |
| Msa0363890 | MtrunA17_Chr3g0131351 | 47.059 | 340 | 169 | 4 | 342 | 672 | 616 | 953 | 3.95e-102 | 335 |
| Msa0363890 | MtrunA17_Chr3g0131351 | 40.081 | 247 | 113 | 4 | 101 | 341 | 342 | 559 | 2.90e-40 | 159 |
| Msa0363890 | MtrunA17_Chr4g0061371 | 47.205 | 322 | 165 | 3 | 341 | 660 | 534 | 852 | 2.02e-100 | 330 |
| Msa0363890 | MtrunA17_Chr4g0061371 | 33.043 | 345 | 171 | 7 | 11 | 326 | 91 | 404 | 6.72e-44 | 170 |
| Msa0363890 | MtrunA17_Chr3g0137071 | 46.769 | 325 | 169 | 1 | 342 | 662 | 625 | 949 | 5.88e-99 | 327 |
| Msa0363890 | MtrunA17_Chr3g0137071 | 41.228 | 228 | 103 | 3 | 101 | 326 | 295 | 493 | 7.10e-43 | 167 |
| Msa0363890 | MtrunA17_Chr7g0225161 | 39.693 | 456 | 254 | 8 | 224 | 675 | 428 | 866 | 7.12e-94 | 312 |
| Msa0363890 | MtrunA17_Chr7g0225161 | 31.988 | 347 | 172 | 10 | 11 | 326 | 91 | 404 | 7.49e-40 | 158 |
| Msa0363890 | MtrunA17_Chr2g0329561 | 40.498 | 321 | 183 | 3 | 350 | 669 | 143 | 456 | 1.12e-76 | 255 |
| Msa0363890 | MtrunA17_Chr2g0277781 | 41.724 | 290 | 158 | 4 | 350 | 636 | 2 | 283 | 3.52e-73 | 239 |
| Msa0363890 | MtrunA17_Chr3g0135231 | 34.382 | 445 | 163 | 10 | 5 | 359 | 161 | 566 | 4.80e-58 | 209 |
| Msa0363890 | MtrunA17_Chr3g0135231 | 44.068 | 118 | 65 | 1 | 472 | 589 | 534 | 650 | 1.30e-20 | 96.7 |
| Msa0363890 | MtrunA17_Chr3g0135231 | 40.945 | 127 | 65 | 2 | 1 | 120 | 82 | 205 | 9.19e-19 | 90.9 |
| Msa0363890 | MtrunA17_Chr1g0188061 | 65.882 | 85 | 29 | 0 | 439 | 523 | 233 | 317 | 3.49e-29 | 119 |
| Msa0363890 | MtrunA17_Chr7g0260931 | 46.429 | 84 | 45 | 0 | 347 | 430 | 11 | 94 | 2.16e-20 | 86.7 |
| Msa0363890 | MtrunA17_Chr2g0277771 | 34.559 | 136 | 79 | 4 | 527 | 660 | 1 | 128 | 6.06e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363890 | AT5G50920.1 | 48.110 | 767 | 269 | 11 | 5 | 672 | 173 | 909 | 0.0 | 653 |
| Msa0363890 | AT5G50920.1 | 47.664 | 107 | 53 | 1 | 1 | 107 | 94 | 197 | 1.10e-20 | 98.2 |
| Msa0363890 | AT3G48870.2 | 46.745 | 768 | 279 | 10 | 5 | 672 | 162 | 899 | 0.0 | 641 |
| Msa0363890 | AT3G48870.2 | 47.664 | 107 | 53 | 1 | 1 | 107 | 83 | 186 | 9.22e-21 | 98.2 |
| Msa0363890 | AT3G48870.1 | 46.745 | 768 | 279 | 10 | 5 | 672 | 193 | 930 | 0.0 | 640 |
| Msa0363890 | AT3G48870.1 | 47.664 | 107 | 53 | 1 | 1 | 107 | 114 | 217 | 1.03e-20 | 98.2 |
| Msa0363890 | AT3G48870.4 | 46.745 | 768 | 279 | 10 | 5 | 672 | 193 | 930 | 0.0 | 640 |
| Msa0363890 | AT3G48870.4 | 47.664 | 107 | 53 | 1 | 1 | 107 | 114 | 217 | 1.03e-20 | 98.2 |
| Msa0363890 | AT3G48870.3 | 46.745 | 768 | 279 | 10 | 5 | 672 | 193 | 930 | 0.0 | 640 |
| Msa0363890 | AT3G48870.3 | 47.664 | 107 | 53 | 1 | 1 | 107 | 114 | 217 | 1.03e-20 | 98.2 |
| Msa0363890 | AT5G51070.1 | 36.582 | 790 | 347 | 13 | 5 | 670 | 168 | 927 | 9.36e-158 | 482 |
| Msa0363890 | AT5G15450.1 | 48.598 | 321 | 163 | 1 | 345 | 663 | 614 | 934 | 5.12e-103 | 338 |
| Msa0363890 | AT5G15450.1 | 40.351 | 228 | 105 | 3 | 101 | 326 | 281 | 479 | 7.65e-41 | 161 |
| Msa0363890 | AT2G25140.1 | 48.615 | 325 | 163 | 2 | 342 | 662 | 616 | 940 | 1.56e-101 | 334 |
| Msa0363890 | AT2G25140.1 | 40.789 | 228 | 104 | 3 | 101 | 326 | 286 | 484 | 4.38e-42 | 165 |
| Msa0363890 | AT1G74310.1 | 48.418 | 316 | 158 | 3 | 347 | 660 | 537 | 849 | 3.40e-100 | 329 |
| Msa0363890 | AT1G74310.1 | 31.884 | 345 | 175 | 7 | 11 | 326 | 91 | 404 | 4.78e-41 | 162 |
| Msa0363890 | AT1G74310.2 | 49.821 | 279 | 135 | 3 | 347 | 623 | 537 | 812 | 7.54e-91 | 302 |
| Msa0363890 | AT1G74310.2 | 31.884 | 345 | 175 | 7 | 11 | 326 | 91 | 404 | 3.50e-41 | 162 |
| Msa0363890 | AT4G14670.1 | 35.816 | 282 | 132 | 6 | 50 | 325 | 130 | 368 | 7.12e-40 | 156 |
| Msa0363890 | AT4G14670.1 | 48.819 | 127 | 65 | 0 | 341 | 467 | 496 | 622 | 2.40e-33 | 136 |
| Msa0363890 | AT3G45450.1 | 46.429 | 84 | 42 | 1 | 1 | 84 | 1 | 81 | 3.45e-14 | 75.1 |
Find 113 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTAGCTACAAACTATTT+TGG | 0.166362 | 3_1:+56545541 | Msa0363890:CDS |
| TTTCATTGACATTTAGGTTT+AGG | 0.195139 | 3_1:+56546076 | Msa0363890:CDS |
| TTCAACATGTTATTTCTTCT+TGG | 0.203026 | 3_1:+56545299 | Msa0363890:CDS |
| TTCATTGACATTTAGGTTTA+GGG | 0.218363 | 3_1:+56546077 | Msa0363890:CDS |
| TACATCTTTCATTGACATTT+AGG | 0.220547 | 3_1:+56546070 | Msa0363890:CDS |
| TTGTATAATTTATAACTATA+TGG | 0.249293 | 3_1:+56546554 | Msa0363890:three_prime_UTR |
| CACAGTGCAGCTAGATTAAT+TGG | 0.252437 | 3_1:+56545613 | Msa0363890:CDS |
| CATATACTACTTGGGATTCT+TGG | 0.268673 | 3_1:+56540977 | Msa0363890:CDS |
| CTTGCAATAGTCCTTCTTAA+TGG | 0.273975 | 3_1:-56546144 | None:intergenic |
| GATGGTTCAACCACTTTAAC+TGG | 0.293201 | 3_1:-56544839 | None:intergenic |
| GTTTGTCTTGTAAAGATATA+AGG | 0.297746 | 3_1:+56541107 | Msa0363890:CDS |
| AGGGATTATGTGATTCAAAA+TGG | 0.298678 | 3_1:+56546096 | Msa0363890:CDS |
| GAAACCATAGAAATTCTTAA+AGG | 0.304814 | 3_1:+56544869 | Msa0363890:CDS |
| ATCAAATCAATTGCCTTATC+AGG | 0.314089 | 3_1:-56545094 | None:intergenic |
| GTCAATTAACCGAAGCTATT+CGG | 0.314183 | 3_1:+56545671 | Msa0363890:CDS |
| AGCTAATGCATTGGCTAATT+CGG | 0.325948 | 3_1:-56545527 | None:intergenic |
| GAGGCCTTTAAGAATTTCTA+TGG | 0.327315 | 3_1:-56544873 | None:intergenic |
| CATGCATGACAAATAAAATA+AGG | 0.347704 | 3_1:-56546606 | None:intergenic |
| CGATCGTTTCTTACCTGATA+AGG | 0.357419 | 3_1:+56545081 | Msa0363890:CDS |
| ATGTGCAAAGAAAGTAATTA+TGG | 0.364066 | 3_1:+56540904 | Msa0363890:CDS |
| TTCATGTTCACCGGTCCTTC+AGG | 0.371875 | 3_1:+56545493 | Msa0363890:CDS |
| GGGATTCTTGGTGATTCAAA+TGG | 0.372242 | 3_1:+56540989 | Msa0363890:CDS |
| CTTGAATTACACCTCTTTCA+AGG | 0.373725 | 3_1:-56544646 | None:intergenic |
| AGTAATTATGGCTGCACAAA+AGG | 0.386618 | 3_1:+56540916 | Msa0363890:CDS |
| ATCAAATCAAGAATCTTCTA+AGG | 0.387500 | 3_1:+56544493 | Msa0363890:CDS |
| CATGTTATTTCTTCTTGGAT+TGG | 0.389250 | 3_1:+56545304 | Msa0363890:CDS |
| AACCTATTTGTTACTTGTGC+TGG | 0.389558 | 3_1:+56544181 | Msa0363890:CDS |
| ATGCTACAAATTCTTGATGA+TGG | 0.390372 | 3_1:+56545760 | Msa0363890:CDS |
| ATTATAATGACTAGCAATCT+TGG | 0.395448 | 3_1:+56545832 | Msa0363890:CDS |
| TTGACCGCCGTCACGGAAAC+CGG | 0.402934 | 3_1:-56545653 | None:intergenic |
| TGGAATTTCATGCAATTTGA+TGG | 0.409908 | 3_1:+56546431 | Msa0363890:CDS |
| TACCAGCACAAGTAACAAAT+AGG | 0.415835 | 3_1:-56544183 | None:intergenic |
| GATGTTAAGGAAAGAAATAA+AGG | 0.443438 | 3_1:+56546194 | Msa0363890:CDS |
| TTGAAACATGCCCTTGAAAG+AGG | 0.447531 | 3_1:+56544635 | Msa0363890:CDS |
| GGTAGAGGTGGTGGTTGTAG+TGG | 0.448297 | 3_1:+56541085 | Msa0363890:CDS |
| AATATTTCAACCAGTTAAAG+TGG | 0.449508 | 3_1:+56544829 | Msa0363890:CDS |
| TGATGGAGAGAGAAAAGATA+TGG | 0.451204 | 3_1:+56546407 | Msa0363890:CDS |
| CGAATTTCTCCGAATAGCTT+CGG | 0.452426 | 3_1:-56545680 | None:intergenic |
| CCTTGCCTTATAGGAGAACC+TGG | 0.452712 | 3_1:+56544055 | Msa0363890:intron |
| ATTGATTTGATTGATGAAGC+TGG | 0.454157 | 3_1:+56545106 | Msa0363890:CDS |
| CATTGGCTGAAAAGATGTTA+AGG | 0.458668 | 3_1:+56546181 | Msa0363890:CDS |
| GTGAACATGAAACTTGCAAT+AGG | 0.461655 | 3_1:-56545481 | None:intergenic |
| AGCACAGAACATATACTACT+TGG | 0.463548 | 3_1:+56540968 | Msa0363890:CDS |
| TAGGGAGCAAGTGATGAAGT+TGG | 0.470468 | 3_1:+56541060 | Msa0363890:CDS |
| CTTGGTAACAACATTATTGA+AGG | 0.473402 | 3_1:+56545850 | Msa0363890:CDS |
| TCACGGAAACCGGCATAGCC+AGG | 0.477017 | 3_1:-56545643 | None:intergenic |
| AAGTTGGTTGGTAGAGGTGG+TGG | 0.480856 | 3_1:+56541076 | Msa0363890:CDS |
| GGAATTTCATGCAATTTGAT+GGG | 0.482208 | 3_1:+56546432 | Msa0363890:CDS |
| GCAACTTATATATATAGTTA+TGG | 0.484707 | 3_1:-56546489 | None:intergenic |
| TCCTTTGGTACATCACTGAC+TGG | 0.488002 | 3_1:-56545331 | None:intergenic |
| GGCTATGCCGGTTTCCGTGA+CGG | 0.488783 | 3_1:+56545646 | Msa0363890:CDS |
| TTGAATTACACCTCTTTCAA+GGG | 0.490421 | 3_1:-56544645 | None:intergenic |
| AGATTAATTGGAGCACCTCC+TGG | 0.491051 | 3_1:+56545625 | Msa0363890:CDS |
| AATGAATTTACCTAGACTCT+TGG | 0.492507 | 3_1:-56541176 | None:intergenic |
| CAAAAGGAAGCAAGGTTTGT+GGG | 0.497205 | 3_1:+56540932 | Msa0363890:CDS |
| GGATTCTTGGTGATTCAAAT+GGG | 0.503736 | 3_1:+56540990 | Msa0363890:CDS |
| AAGAATCAAGTGTTTAATCA+AGG | 0.508788 | 3_1:+56544517 | Msa0363890:CDS |
| ATAGTTTGTAGCTAATGCAT+TGG | 0.510870 | 3_1:-56545536 | None:intergenic |
| TGCTGGTATTGTGAAATTCG+TGG | 0.517261 | 3_1:+56544198 | Msa0363890:CDS |
| ATTAGATATGAGTGAGTACA+TGG | 0.518212 | 3_1:+56545585 | Msa0363890:CDS |
| AGAACTAACAAAATTGGAAG+TGG | 0.523751 | 3_1:+56545990 | Msa0363890:CDS |
| ATTTGTCTCAGCAATATGTA+AGG | 0.523988 | 3_1:+56544960 | Msa0363890:CDS |
| AATGGATATAATCCTAGCTA+TGG | 0.526824 | 3_1:+56546114 | Msa0363890:CDS |
| GGAGCACCTCCTGGCTATGC+CGG | 0.527334 | 3_1:+56545634 | Msa0363890:CDS |
| CTTATAGGAGAACCTGGAGT+AGG | 0.527810 | 3_1:+56544061 | Msa0363890:intron |
| TCTATGGTTTCTTCAACAGA+TGG | 0.528707 | 3_1:-56544857 | None:intergenic |
| GTTGGTGATTATTTAGCTGA+TGG | 0.528783 | 3_1:+56546330 | Msa0363890:CDS |
| GTTGGTGATTATTTAGCTGA+TGG | 0.528783 | 3_1:+56546390 | Msa0363890:CDS |
| ATTGCAAGTTTCATGTTCAC+CGG | 0.535119 | 3_1:+56545484 | Msa0363890:CDS |
| GAAGCATGTCTTCTAAATTG+AGG | 0.535628 | 3_1:-56545369 | None:intergenic |
| GGTGATTCAAATGGGTTGAC+TGG | 0.536125 | 3_1:+56540998 | Msa0363890:CDS |
| GGAAGACTCACAGATGGAAA+AGG | 0.536149 | 3_1:+56545781 | Msa0363890:CDS |
| GGAGAGAGAAAAGATATGGT+TGG | 0.539804 | 3_1:+56546411 | Msa0363890:CDS |
| TCTGTTGATCATTCAGATGT+TGG | 0.553274 | 3_1:+56546312 | Msa0363890:CDS |
| TCTGTTGATCATTCAGATGT+TGG | 0.553274 | 3_1:+56546372 | Msa0363890:CDS |
| ACGAATCGCTCGGCAGATTG+TGG | 0.558075 | 3_1:-56545425 | None:intergenic |
| CTCAAACATGCCAAGAGTCT+AGG | 0.560172 | 3_1:+56541166 | Msa0363890:CDS |
| TGTTCAACTTTGTCATGCAA+AGG | 0.564537 | 3_1:+56545135 | Msa0363890:CDS |
| TTATAGGAGAACCTGGAGTA+GGG | 0.567197 | 3_1:+56544062 | Msa0363890:intron |
| GTGATGAAGTTGGTTGGTAG+AGG | 0.569417 | 3_1:+56541070 | Msa0363890:CDS |
| AATGGTCTAGCACCATAGCT+AGG | 0.571100 | 3_1:-56546126 | None:intergenic |
| CGGTTAATTGACCGCCGTCA+CGG | 0.572693 | 3_1:-56545660 | None:intergenic |
| GAGCAAGTGATGAAGTTGGT+TGG | 0.572864 | 3_1:+56541064 | Msa0363890:CDS |
| TCAGGTGGTTGCATTGGACG+TGG | 0.573331 | 3_1:+56544451 | Msa0363890:intron |
| ATGAAGTTGGTTGGTAGAGG+TGG | 0.573783 | 3_1:+56541073 | Msa0363890:CDS |
| GTTGATATCAATGTTGATGA+GGG | 0.577273 | 3_1:+56546234 | Msa0363890:CDS |
| AGTGATGTACCAAAGGAAGA+AGG | 0.581553 | 3_1:+56545337 | Msa0363890:CDS |
| TTGGTAACAACATTATTGAA+GGG | 0.582740 | 3_1:+56545851 | Msa0363890:CDS |
| TTAAGGAAAGAAATAAAGGA+AGG | 0.583157 | 3_1:+56546198 | Msa0363890:CDS |
| ACAAAAGGAAGCAAGGTTTG+TGG | 0.584334 | 3_1:+56540931 | Msa0363890:CDS |
| GCACAGAACATATACTACTT+GGG | 0.584965 | 3_1:+56540969 | Msa0363890:CDS |
| AATCTACGTTAGTTACAAGC+TGG | 0.587467 | 3_1:+56544225 | Msa0363890:CDS |
| ACCAGTCAGTGATGTACCAA+AGG | 0.593951 | 3_1:+56545330 | Msa0363890:CDS |
| TGGCTGCACAAAAGGAAGCA+AGG | 0.598708 | 3_1:+56540924 | Msa0363890:CDS |
| GATGATGGAAGACTCACAGA+TGG | 0.603024 | 3_1:+56545775 | Msa0363890:CDS |
| GCATGTCTTCTAAATTGAGG+AGG | 0.605380 | 3_1:-56545366 | None:intergenic |
| ATGCTTCACAAACACGTCAT+CGG | 0.606617 | 3_1:+56545385 | Msa0363890:CDS |
| TGTTGATATCAATGTTGATG+AGG | 0.608337 | 3_1:+56546233 | Msa0363890:CDS |
| CTCTAGCACGACGAATCGCT+CGG | 0.613183 | 3_1:-56545435 | None:intergenic |
| TTCACCGGTCCTTCAGGCGT+AGG | 0.614407 | 3_1:+56545499 | Msa0363890:CDS |
| ATGGTGCTAGACCATTAAGA+AGG | 0.621925 | 3_1:+56546133 | Msa0363890:CDS |
| GGGAAAACATCAATCATACA+TGG | 0.622271 | 3_1:+56544082 | Msa0363890:CDS |
| GCGATTCGTCGTGCTAGAGT+CGG | 0.623561 | 3_1:+56545439 | Msa0363890:CDS |
| ATCAAGGAAATTGAACTAAG+CGG | 0.638205 | 3_1:+56544533 | Msa0363890:CDS |
| GAATGAGCACAGAATGCACA+TGG | 0.644675 | 3_1:+56544784 | Msa0363890:CDS |
| TCGGTCTAAGAAACTGCAGA+AGG | 0.646351 | 3_1:+56545458 | Msa0363890:CDS |
| CAAAATGTATGCGAAACTGT+CGG | 0.646661 | 3_1:-56544615 | None:intergenic |
| ATTCGATGCAGAAACATCAG+AGG | 0.684166 | 3_1:+56544592 | Msa0363890:CDS |
| AATGCGACTCATATGTTCCG+CGG | 0.684640 | 3_1:-56544895 | None:intergenic |
| GAAATTCTTAAAGGCCTCCG+CGG | 0.691862 | 3_1:+56544878 | Msa0363890:CDS |
| TATGCCGGTTTCCGTGACGG+CGG | 0.702517 | 3_1:+56545649 | Msa0363890:CDS |
| CGGAAACCGGCATAGCCAGG+AGG | 0.705177 | 3_1:-56545640 | None:intergenic |
| GCGACTCATATGTTCCGCGG+AGG | 0.708714 | 3_1:-56544892 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAAATTAATATTTGAT+TGG | + | chr3_1:56541490-56541509 | Msa0363890:intron | 10.0% |
| !! | TTTCAAATTAATATTTGATT+GGG | + | chr3_1:56541491-56541510 | Msa0363890:intron | 10.0% |
| !!! | ATATAACAATAAAATTGTTT+TGG | + | chr3_1:56542221-56542240 | Msa0363890:intron | 10.0% |
| !!! | ATATAACAATAAAATTGTTT+TGG | + | chr3_1:56542221-56542240 | Msa0363890:intron | 10.0% |
| !! | TAATGTAAACAAAATAATTT+CGG | + | chr3_1:56543208-56543227 | Msa0363890:intron | 10.0% |
| !! | TTGTATAATTTATAACTATA+TGG | + | chr3_1:56546554-56546573 | Msa0363890:three_prime_UTR | 10.0% |
| !!! | AATTGATTTTAATGTTAGTA+GGG | + | chr3_1:56541042-56541061 | Msa0363890:CDS | 15.0% |
| !! | AATTTGTCCTTAAAATTATA+TGG | - | chr3_1:56541362-56541381 | None:intergenic | 15.0% |
| !! | AAATTAAACCAAATTGATTA+GGG | + | chr3_1:56541514-56541533 | Msa0363890:intron | 15.0% |
| !! | ATAGCTTACTATATTTAATA+AGG | - | chr3_1:56542113-56542132 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCAATATTCTCTT+TGG | + | chr3_1:56542731-56542750 | Msa0363890:intron | 15.0% |
| !!! | TTTTTTTCAATATTCTCTTT+GGG | + | chr3_1:56542732-56542751 | Msa0363890:intron | 15.0% |
| !! | TGTATTACATATATGAATTA+TGG | + | chr3_1:56543913-56543932 | Msa0363890:intron | 15.0% |
| !!! | TAATAATTACTTTGTTTTTC+AGG | + | chr3_1:56544433-56544452 | Msa0363890:intron | 15.0% |
| !! | TAGTATATAAGACTAATTAT+TGG | - | chr3_1:56544719-56544738 | None:intergenic | 15.0% |
| !! | ATTTATAATTCTCAAATGTT+TGG | + | chr3_1:56545186-56545205 | Msa0363890:intron | 15.0% |
| !! | TATTGATCATAAAAAGAATT+TGG | + | chr3_1:56545897-56545916 | Msa0363890:CDS | 15.0% |
| !!! | TTTTAAAGAACTAACAAAAT+TGG | + | chr3_1:56545984-56546003 | Msa0363890:CDS | 15.0% |
| !!! | GAATTGATTTTAATGTTAGT+AGG | + | chr3_1:56541041-56541060 | Msa0363890:CDS | 20.0% |
| !! | AGACTAATGTTTCAAATTTA+TGG | + | chr3_1:56541296-56541315 | Msa0363890:intron | 20.0% |
| !! | GACTAATGTTTCAAATTTAT+GGG | + | chr3_1:56541297-56541316 | Msa0363890:intron | 20.0% |
| !!! | TCATTCTAAAATTTTGTTCA+AGG | + | chr3_1:56541321-56541340 | Msa0363890:intron | 20.0% |
| !!! | TTAATTTGAAAAGCATTCAT+AGG | - | chr3_1:56541482-56541501 | None:intergenic | 20.0% |
| !! | GAAATTAAACCAAATTGATT+AGG | + | chr3_1:56541513-56541532 | Msa0363890:intron | 20.0% |
| !! | AGAAGATTCAAAGAATAAAA+TGG | + | chr3_1:56541878-56541897 | Msa0363890:intron | 20.0% |
| !! | GAAGATTCAAAGAATAAAAT+GGG | + | chr3_1:56541879-56541898 | Msa0363890:intron | 20.0% |
| !! | AGAATAATTCGATACATATA+GGG | + | chr3_1:56542045-56542064 | Msa0363890:intron | 20.0% |
| !!! | TTTTTTCAATATTCTCTTTG+GGG | + | chr3_1:56542733-56542752 | Msa0363890:intron | 20.0% |
| !!! | AAAAAGTGCTTTTTTTTTGT+AGG | + | chr3_1:56543952-56543971 | Msa0363890:intron | 20.0% |
| !!! | AAAAGTGCTTTTTTTTTGTA+GGG | + | chr3_1:56543953-56543972 | Msa0363890:intron | 20.0% |
| !! | CAAATATACACTATATACAA+AGG | - | chr3_1:56544754-56544773 | None:intergenic | 20.0% |
| !!! | TGGTTGAAATATTCTTTTTA+AGG | - | chr3_1:56544822-56544841 | None:intergenic | 20.0% |
| !! | AAATGTTTGGATTAATCAAA+TGG | + | chr3_1:56545199-56545218 | Msa0363890:intron | 20.0% |
| !! | AATGTTTGGATTAATCAAAT+GGG | + | chr3_1:56545200-56545219 | Msa0363890:intron | 20.0% |
| !! | TCATAAAAAGAATTTGGTTA+TGG | + | chr3_1:56545903-56545922 | Msa0363890:CDS | 20.0% |
| !! | TGAATCCAAAAAATGTTAAA+AGG | + | chr3_1:56546271-56546290 | Msa0363890:CDS | 20.0% |
| !! | GAATCCAAAAAATGTTAAAA+GGG | + | chr3_1:56546272-56546291 | Msa0363890:CDS | 20.0% |
| !! | GCAACTTATATATATAGTTA+TGG | - | chr3_1:56546492-56546511 | None:intergenic | 20.0% |
| ! | ATGTGCAAAGAAAGTAATTA+TGG | + | chr3_1:56540904-56540923 | Msa0363890:CDS | 25.0% |
| ! | GTTTGTCTTGTAAAGATATA+AGG | + | chr3_1:56541107-56541126 | Msa0363890:CDS | 25.0% |
| ! | GTCCTTAAAATTATATGGTA+CGG | - | chr3_1:56541357-56541376 | None:intergenic | 25.0% |
| ! | TTTACTTTCCCTAATCAATT+TGG | - | chr3_1:56541525-56541544 | None:intergenic | 25.0% |
| ! | ATAGAGTGAAAGAAATGAAT+TGG | - | chr3_1:56541574-56541593 | None:intergenic | 25.0% |
| ! | ACTCAATTGATACAAAATCA+AGG | + | chr3_1:56541690-56541709 | Msa0363890:intron | 25.0% |
| ! | TTTCTAGATTCTCTTTACAT+TGG | - | chr3_1:56541785-56541804 | None:intergenic | 25.0% |
| ! | TTGAAGAAAATGTTCACTAA+AGG | + | chr3_1:56541843-56541862 | Msa0363890:intron | 25.0% |
| ! | GAGAATAATTCGATACATAT+AGG | + | chr3_1:56542044-56542063 | Msa0363890:intron | 25.0% |
| ! | GAATAATTCGATACATATAG+GGG | + | chr3_1:56542046-56542065 | Msa0363890:intron | 25.0% |
| !!! | TGTTTTGGAAGTATAAGTTT+TGG | + | chr3_1:56542272-56542291 | Msa0363890:intron | 25.0% |
| ! | TAAAAAAAAACGTGTGAAAG+TGG | - | chr3_1:56542588-56542607 | None:intergenic | 25.0% |
| ! | ATTTATGTTAGATACAACCT+AGG | + | chr3_1:56542612-56542631 | Msa0363890:intron | 25.0% |
| ! | AAAGAAAGAAGAGAATTAGA+GGG | - | chr3_1:56542707-56542726 | None:intergenic | 25.0% |
| ! | AAAAAGTGATCAAAATTCGT+CGG | + | chr3_1:56542757-56542776 | Msa0363890:intron | 25.0% |
| !! | CAGATTTAAAATTATCCCAA+GGG | - | chr3_1:56542821-56542840 | None:intergenic | 25.0% |
| ! | AAAAGTAATCAATCTTCGTT+GGG | - | chr3_1:56542971-56542990 | None:intergenic | 25.0% |
| ! | AAAAAGTAATCAATCTTCGT+TGG | - | chr3_1:56542972-56542991 | None:intergenic | 25.0% |
| !!! | TACTTATTTTCTCCTTTTTG+GGG | - | chr3_1:56542996-56543015 | None:intergenic | 25.0% |
| !!! | CTACTTATTTTCTCCTTTTT+GGG | - | chr3_1:56542997-56543016 | None:intergenic | 25.0% |
| !!! | TCTACTTATTTTCTCCTTTT+TGG | - | chr3_1:56542998-56543017 | None:intergenic | 25.0% |
| !! | GTATATTCGACTTTTACTTT+GGG | + | chr3_1:56543442-56543461 | Msa0363890:intron | 25.0% |
| ! | CAGAATTCTTGAAATAAAAC+TGG | + | chr3_1:56543485-56543504 | Msa0363890:intron | 25.0% |
| !! | AACAATAACCTAGAGATTTT+TGG | + | chr3_1:56543785-56543804 | Msa0363890:intron | 25.0% |
| !! | GGCATTGAATTTAGTTATTT+AGG | + | chr3_1:56543849-56543868 | Msa0363890:intron | 25.0% |
| !!! | TAATTACTTTGTTTTTCAGG+TGG | + | chr3_1:56544436-56544455 | Msa0363890:intron | 25.0% |
| ! | ATCAAATCAAGAATCTTCTA+AGG | + | chr3_1:56544493-56544512 | Msa0363890:CDS | 25.0% |
| ! | AAGAATCAAGTGTTTAATCA+AGG | + | chr3_1:56544517-56544536 | Msa0363890:CDS | 25.0% |
| !! | AAGAATTTTCTCTTGAAACT+TGG | + | chr3_1:56544670-56544689 | Msa0363890:intron | 25.0% |
| ! | AATATTTCAACCAGTTAAAG+TGG | + | chr3_1:56544829-56544848 | Msa0363890:CDS | 25.0% |
| ! | GAAACCATAGAAATTCTTAA+AGG | + | chr3_1:56544869-56544888 | Msa0363890:CDS | 25.0% |
| ! | TATAATACATGTTGCAGAAT+TGG | - | chr3_1:56545017-56545036 | None:intergenic | 25.0% |
| !! | TCTTTTTGTTCTGTTTCAAA+AGG | - | chr3_1:56545240-56545259 | None:intergenic | 25.0% |
| !!! | TTTTGAAACAGAACAAAAAG+AGG | + | chr3_1:56545239-56545258 | Msa0363890:intron | 25.0% |
| !! | TTTGAAACAGAACAAAAAGA+GGG | + | chr3_1:56545240-56545259 | Msa0363890:intron | 25.0% |
| !!! | TTCAACATGTTATTTCTTCT+TGG | + | chr3_1:56545299-56545318 | Msa0363890:CDS | 25.0% |
| ! | ATTATAATGACTAGCAATCT+TGG | + | chr3_1:56545832-56545851 | Msa0363890:CDS | 25.0% |
| !! | TTGGTAACAACATTATTGAA+GGG | + | chr3_1:56545851-56545870 | Msa0363890:CDS | 25.0% |
| ! | TAAAAAGAATTTGGTTATGG+AGG | + | chr3_1:56545906-56545925 | Msa0363890:CDS | 25.0% |
| ! | AGAAGTTTGTGAAAAAATGA+TGG | + | chr3_1:56546038-56546057 | Msa0363890:CDS | 25.0% |
| ! | TACATCTTTCATTGACATTT+AGG | + | chr3_1:56546070-56546089 | Msa0363890:CDS | 25.0% |
| !! | TTTCATTGACATTTAGGTTT+AGG | + | chr3_1:56546076-56546095 | Msa0363890:CDS | 25.0% |
| !! | TTCATTGACATTTAGGTTTA+GGG | + | chr3_1:56546077-56546096 | Msa0363890:CDS | 25.0% |
| ! | GATGTTAAGGAAAGAAATAA+AGG | + | chr3_1:56546194-56546213 | Msa0363890:CDS | 25.0% |
| ! | TTAAGGAAAGAAATAAAGGA+AGG | + | chr3_1:56546198-56546217 | Msa0363890:CDS | 25.0% |
| !! | TCTTCCCTTTTAACATTTTT+TGG | - | chr3_1:56546279-56546298 | None:intergenic | 25.0% |
| GGAAAAATTCGTAAGTCTTA+TGG | + | chr3_1:56541019-56541038 | Msa0363890:CDS | 30.0% | |
| AATGAATTTACCTAGACTCT+TGG | - | chr3_1:56541179-56541198 | None:intergenic | 30.0% | |
| ! | GACCGTACCATATAATTTTA+AGG | + | chr3_1:56541352-56541371 | Msa0363890:intron | 30.0% |
| CTCTTTACATTGGAAAACAA+TGG | - | chr3_1:56541775-56541794 | None:intergenic | 30.0% | |
| !! | AATTTCTTTGAAATGCGAAC+AGG | + | chr3_1:56541808-56541827 | Msa0363890:intron | 30.0% |
| TTATTCTTTGAATCTTCTGC+AGG | - | chr3_1:56541876-56541895 | None:intergenic | 30.0% | |
| GATTCAAAGAATAAAATGGG+AGG | + | chr3_1:56541882-56541901 | Msa0363890:intron | 30.0% | |
| AATTGCGAATTATGTGACTA+TGG | - | chr3_1:56541980-56541999 | None:intergenic | 30.0% | |
| !! | TGGACTTTTACTTTGGAAAT+GGG | - | chr3_1:56542449-56542468 | None:intergenic | 30.0% |
| !! | TTGGACTTTTACTTTGGAAA+TGG | - | chr3_1:56542450-56542469 | None:intergenic | 30.0% |
| GGTTGTATCTAACATAAATG+TGG | - | chr3_1:56542611-56542630 | None:intergenic | 30.0% | |
| GGGTATTTATAGGTAGAAAT+GGG | - | chr3_1:56542640-56542659 | None:intergenic | 30.0% | |
| ! | AGGGTATTTATAGGTAGAAA+TGG | - | chr3_1:56542641-56542660 | None:intergenic | 30.0% |
| !! | AAGTATGTGAGGGTATTTAT+AGG | - | chr3_1:56542650-56542669 | None:intergenic | 30.0% |
| CAAAGAAAGAAGAGAATTAG+AGG | - | chr3_1:56542708-56542727 | None:intergenic | 30.0% | |
| AAAAGTGATCAAAATTCGTC+GGG | + | chr3_1:56542758-56542777 | Msa0363890:intron | 30.0% | |
| ! | GCAGATTTAAAATTATCCCA+AGG | - | chr3_1:56542822-56542841 | None:intergenic | 30.0% |
| CAGATTTAAATTTAGCCCAA+GGG | + | chr3_1:56542904-56542923 | Msa0363890:intron | 30.0% | |
| AAAATACATCATCAACCCTT+GGG | - | chr3_1:56542922-56542941 | None:intergenic | 30.0% | |
| !!! | GATTACTTTTTACCCCAAAA+AGG | + | chr3_1:56542981-56543000 | Msa0363890:intron | 30.0% |
| ! | GGTATATTCGACTTTTACTT+TGG | + | chr3_1:56543441-56543460 | Msa0363890:intron | 30.0% |
| TGAAGAAGATGATGAAACTA+GGG | - | chr3_1:56543532-56543551 | None:intergenic | 30.0% | |
| ACGAATTTCTTCACGAATTT+GGG | + | chr3_1:56543682-56543701 | Msa0363890:intron | 30.0% | |
| ! | TGATTCAGATAATTTGTCGA+AGG | + | chr3_1:56544020-56544039 | Msa0363890:intron | 30.0% |
| TTATGTTCCTGAAAAACTCA+AGG | + | chr3_1:56544129-56544148 | Msa0363890:CDS | 30.0% | |
| TATGTTCCTGAAAAACTCAA+GGG | + | chr3_1:56544130-56544149 | Msa0363890:CDS | 30.0% | |
| GTTCAATTATTGAGCAACAA+CGG | + | chr3_1:56544383-56544402 | Msa0363890:intron | 30.0% | |
| ! | GATACCGTGATTTAAGTTAA+AGG | - | chr3_1:56544409-56544428 | None:intergenic | 30.0% |
| ATCAAGGAAATTGAACTAAG+CGG | + | chr3_1:56544533-56544552 | Msa0363890:CDS | 30.0% | |
| TTGAATTACACCTCTTTCAA+GGG | - | chr3_1:56544648-56544667 | None:intergenic | 30.0% | |
| GACTAATGTGTGAAATGTAA+AGG | - | chr3_1:56544697-56544716 | None:intergenic | 30.0% | |
| ATTTGTCTCAGCAATATGTA+AGG | + | chr3_1:56544960-56544979 | Msa0363890:CDS | 30.0% | |
| ATCAAATCAATTGCCTTATC+AGG | - | chr3_1:56545097-56545116 | None:intergenic | 30.0% | |
| !! | ATTGATTTGATTGATGAAGC+TGG | + | chr3_1:56545106-56545125 | Msa0363890:CDS | 30.0% |
| TGTCATGCAAAGGTAAAAAA+TGG | + | chr3_1:56545145-56545164 | Msa0363890:intron | 30.0% | |
| TTGAAACAGAACAAAAAGAG+GGG | + | chr3_1:56545241-56545260 | Msa0363890:intron | 30.0% | |
| !!! | ATATCACACTTTTTCACACT+AGG | - | chr3_1:56545280-56545299 | None:intergenic | 30.0% |
| !! | CATGTTATTTCTTCTTGGAT+TGG | + | chr3_1:56545304-56545323 | Msa0363890:CDS | 30.0% |
| ! | ATAGTTTGTAGCTAATGCAT+TGG | - | chr3_1:56545539-56545558 | None:intergenic | 30.0% |
| ! | GCATTAGCTACAAACTATTT+TGG | + | chr3_1:56545541-56545560 | Msa0363890:CDS | 30.0% |
| ATTAGATATGAGTGAGTACA+TGG | + | chr3_1:56545585-56545604 | Msa0363890:CDS | 30.0% | |
| ATGCTACAAATTCTTGATGA+TGG | + | chr3_1:56545760-56545779 | Msa0363890:CDS | 30.0% | |
| ! | CTTGGTAACAACATTATTGA+AGG | + | chr3_1:56545850-56545869 | Msa0363890:CDS | 30.0% |
| AGAACTAACAAAATTGGAAG+TGG | + | chr3_1:56545990-56546009 | Msa0363890:CDS | 30.0% | |
| AGGGATTATGTGATTCAAAA+TGG | + | chr3_1:56546096-56546115 | Msa0363890:CDS | 30.0% | |
| AATGGATATAATCCTAGCTA+TGG | + | chr3_1:56546114-56546133 | Msa0363890:CDS | 30.0% | |
| ! | AAGGACTATTGCAAGATTTT+TGG | + | chr3_1:56546152-56546171 | Msa0363890:CDS | 30.0% |
| !! | AAGATTTTTGGAAGACACAT+TGG | + | chr3_1:56546164-56546183 | Msa0363890:CDS | 30.0% |
| TGTTGATATCAATGTTGATG+AGG | + | chr3_1:56546233-56546252 | Msa0363890:CDS | 30.0% | |
| ! | GTTGATATCAATGTTGATGA+GGG | + | chr3_1:56546234-56546253 | Msa0363890:CDS | 30.0% |
| TGGAATTTCATGCAATTTGA+TGG | + | chr3_1:56546431-56546450 | Msa0363890:CDS | 30.0% | |
| GGAATTTCATGCAATTTGAT+GGG | + | chr3_1:56546432-56546451 | Msa0363890:CDS | 30.0% | |
| CAATTTGATGGGAAAAATGT+TGG | + | chr3_1:56546443-56546462 | Msa0363890:CDS | 30.0% | |
| AGTAATTATGGCTGCACAAA+AGG | + | chr3_1:56540916-56540935 | Msa0363890:CDS | 35.0% | |
| AGCACAGAACATATACTACT+TGG | + | chr3_1:56540968-56540987 | Msa0363890:CDS | 35.0% | |
| GCACAGAACATATACTACTT+GGG | + | chr3_1:56540969-56540988 | Msa0363890:CDS | 35.0% | |
| CATATACTACTTGGGATTCT+TGG | + | chr3_1:56540977-56540996 | Msa0363890:CDS | 35.0% | |
| ! | GGATTCTTGGTGATTCAAAT+GGG | + | chr3_1:56540990-56541009 | Msa0363890:CDS | 35.0% |
| ATTATATGGTACGGTCAACT+TGG | - | chr3_1:56541348-56541367 | None:intergenic | 35.0% | |
| AAGGCATAACAAACTATGTG+AGG | - | chr3_1:56541603-56541622 | None:intergenic | 35.0% | |
| !! | CACATAGTTTGTTATGCCTT+AGG | + | chr3_1:56541603-56541622 | Msa0363890:intron | 35.0% |
| ! | TGCCTTAGGTTATGATAATG+TGG | + | chr3_1:56541617-56541636 | Msa0363890:intron | 35.0% |
| GTCCACATTATCATAACCTA+AGG | - | chr3_1:56541622-56541641 | None:intergenic | 35.0% | |
| ! | CAGTAACATTTTCTTCAACC+TGG | - | chr3_1:56541908-56541927 | None:intergenic | 35.0% |
| ! | CTATGTCATACGTTTTCTGT+AGG | + | chr3_1:56542349-56542368 | Msa0363890:intron | 35.0% |
| TTCTGTAGGCAATTCTTCAT+TGG | + | chr3_1:56542363-56542382 | Msa0363890:intron | 35.0% | |
| TCTGTAGGCAATTCTTCATT+GGG | + | chr3_1:56542364-56542383 | Msa0363890:intron | 35.0% | |
| GGAAATGGGAAAAACTGTTT+GGG | - | chr3_1:56542435-56542454 | None:intergenic | 35.0% | |
| TGGAAATGGGAAAAACTGTT+TGG | - | chr3_1:56542436-56542455 | None:intergenic | 35.0% | |
| ! | GGCATTTTGGACTTTTACTT+TGG | - | chr3_1:56542456-56542475 | None:intergenic | 35.0% |
| ! | GGAATATAGGAAGTATGTGA+GGG | - | chr3_1:56542660-56542679 | None:intergenic | 35.0% |
| ! | AGGAATATAGGAAGTATGTG+AGG | - | chr3_1:56542661-56542680 | None:intergenic | 35.0% |
| GGAGATAATGTGAGGAATAT+AGG | - | chr3_1:56542673-56542692 | None:intergenic | 35.0% | |
| AAAGTGATCAAAATTCGTCG+GGG | + | chr3_1:56542759-56542778 | Msa0363890:intron | 35.0% | |
| ! | CAAGAAGTTCTTTTTACCCA+CGG | - | chr3_1:56542869-56542888 | None:intergenic | 35.0% |
| TGGGTAAAAAGAACTTCTTG+TGG | + | chr3_1:56542869-56542888 | Msa0363890:intron | 35.0% | |
| CCTTGGGCTAAATTTAAATC+TGG | - | chr3_1:56542906-56542925 | None:intergenic | 35.0% | |
| CCAGATTTAAATTTAGCCCA+AGG | + | chr3_1:56542903-56542922 | Msa0363890:intron | 35.0% | |
| GAAAATACATCATCAACCCT+TGG | - | chr3_1:56542923-56542942 | None:intergenic | 35.0% | |
| ! | ATGATGTATTTTCCCCAAGA+AGG | + | chr3_1:56542930-56542949 | Msa0363890:intron | 35.0% |
| GTGAAGAAGATGATGAAACT+AGG | - | chr3_1:56543533-56543552 | None:intergenic | 35.0% | |
| CAAATTCGTGAAGAAATTCG+TGG | - | chr3_1:56543683-56543702 | None:intergenic | 35.0% | |
| CACGAATTTCTTCACGAATT+TGG | + | chr3_1:56543681-56543700 | Msa0363890:intron | 35.0% | |
| GGGAGAATCAATATGTGAAT+CGG | + | chr3_1:56543702-56543721 | Msa0363890:intron | 35.0% | |
| ! | GATTGGTTCCAAAAATCTCT+AGG | - | chr3_1:56543796-56543815 | None:intergenic | 35.0% |
| TGGAACCAATCTGACAAAAT+TGG | + | chr3_1:56543805-56543824 | Msa0363890:intron | 35.0% | |
| ! | TTGTGCCAATTTTGTCAGAT+TGG | - | chr3_1:56543813-56543832 | None:intergenic | 35.0% |
| ! | GGTAAACTTCATCCTTTTGT+GGG | + | chr3_1:56543974-56543993 | Msa0363890:intron | 35.0% |
| AAAAACAACCCTTGCCTTAT+AGG | + | chr3_1:56544046-56544065 | Msa0363890:intron | 35.0% | |
| GGGAAAACATCAATCATACA+TGG | + | chr3_1:56544082-56544101 | Msa0363890:CDS | 35.0% | |
| ATGTTCCTGAAAAACTCAAG+GGG | + | chr3_1:56544131-56544150 | Msa0363890:CDS | 35.0% | |
| ! | TTTTTCCCCTTGAGTTTTTC+AGG | - | chr3_1:56544139-56544158 | None:intergenic | 35.0% |
| TGAAAAACTCAAGGGGAAAA+AGG | + | chr3_1:56544138-56544157 | Msa0363890:CDS | 35.0% | |
| ! | AACCTATTTGTTACTTGTGC+TGG | + | chr3_1:56544181-56544200 | Msa0363890:CDS | 35.0% |
| TACCAGCACAAGTAACAAAT+AGG | - | chr3_1:56544186-56544205 | None:intergenic | 35.0% | |
| AATCTACGTTAGTTACAAGC+TGG | + | chr3_1:56544225-56544244 | Msa0363890:CDS | 35.0% | |
| AATCTACGTTAGTTACAAGC+TGG | + | chr3_1:56544225-56544244 | Msa0363890:CDS | 35.0% | |
| AATCTACGTTAGTTACAAGC+TGG | + | chr3_1:56544225-56544244 | Msa0363890:CDS | 35.0% | |
| ! | ACGGCCTTTAACTTAAATCA+CGG | + | chr3_1:56544402-56544421 | Msa0363890:intron | 35.0% |
| CAAAATGTATGCGAAACTGT+CGG | - | chr3_1:56544618-56544637 | None:intergenic | 35.0% | |
| CTTGAATTACACCTCTTTCA+AGG | - | chr3_1:56544649-56544668 | None:intergenic | 35.0% | |
| TCTATGGTTTCTTCAACAGA+TGG | - | chr3_1:56544860-56544879 | None:intergenic | 35.0% | |
| ! | GAGGCCTTTAAGAATTTCTA+TGG | - | chr3_1:56544876-56544895 | None:intergenic | 35.0% |
| TGTTCAACTTTGTCATGCAA+AGG | + | chr3_1:56545135-56545154 | Msa0363890:CDS | 35.0% | |
| GAAGCATGTCTTCTAAATTG+AGG | - | chr3_1:56545372-56545391 | None:intergenic | 35.0% | |
| GTGAACATGAAACTTGCAAT+AGG | - | chr3_1:56545484-56545503 | None:intergenic | 35.0% | |
| ATTGCAAGTTTCATGTTCAC+CGG | + | chr3_1:56545484-56545503 | Msa0363890:CDS | 35.0% | |
| !! | AGCTAATGCATTGGCTAATT+CGG | - | chr3_1:56545530-56545549 | None:intergenic | 35.0% |
| GTCAATTAACCGAAGCTATT+CGG | + | chr3_1:56545671-56545690 | Msa0363890:CDS | 35.0% | |
| ! | TCAAGTCGATTCAAAAACTC+TGG | - | chr3_1:56545952-56545971 | None:intergenic | 35.0% |
| CTTGCAATAGTCCTTCTTAA+TGG | - | chr3_1:56546147-56546166 | None:intergenic | 35.0% | |
| ! | CATTGGCTGAAAAGATGTTA+AGG | + | chr3_1:56546181-56546200 | Msa0363890:CDS | 35.0% |
| TCTGTTGATCATTCAGATGT+TGG | + | chr3_1:56546312-56546331 | Msa0363890:CDS | 35.0% | |
| !! | GTTGGTGATTATTTAGCTGA+TGG | + | chr3_1:56546330-56546349 | Msa0363890:CDS | 35.0% |
| TCTGTTGATCATTCAGATGT+TGG | + | chr3_1:56546312-56546331 | Msa0363890:CDS | 35.0% | |
| !! | GTTGGTGATTATTTAGCTGA+TGG | + | chr3_1:56546330-56546349 | Msa0363890:CDS | 35.0% |
| TGATGGAGAGAGAAAAGATA+TGG | + | chr3_1:56546347-56546366 | Msa0363890:CDS | 35.0% | |
| ACAAAAGGAAGCAAGGTTTG+TGG | + | chr3_1:56540931-56540950 | Msa0363890:CDS | 40.0% | |
| CAAAAGGAAGCAAGGTTTGT+GGG | + | chr3_1:56540932-56540951 | Msa0363890:CDS | 40.0% | |
| ! | GGGATTCTTGGTGATTCAAA+TGG | + | chr3_1:56540989-56541008 | Msa0363890:CDS | 40.0% |
| !! | GACACAATGCACCTACTTTT+GGG | + | chr3_1:56541639-56541658 | Msa0363890:intron | 40.0% |
| !! | ACACAATGCACCTACTTTTG+GGG | + | chr3_1:56541640-56541659 | Msa0363890:intron | 40.0% |
| !!! | TACTTTTGGGGTTGCTTCAA+GGG | + | chr3_1:56541652-56541671 | Msa0363890:intron | 40.0% |
| AAAGAATAAAATGGGAGGCC+AGG | + | chr3_1:56541887-56541906 | Msa0363890:intron | 40.0% | |
| ! | CATATAGGGGTATAGAGCTT+CGG | + | chr3_1:56542059-56542078 | Msa0363890:intron | 40.0% |
| ! | AGCACATGTTAAGTTGCGTA+GGG | - | chr3_1:56542479-56542498 | None:intergenic | 40.0% |
| ! | TAGCACATGTTAAGTTGCGT+AGG | - | chr3_1:56542480-56542499 | None:intergenic | 40.0% |
| AAGTCACGCTCTTAATACAC+TGG | - | chr3_1:56542550-56542569 | None:intergenic | 40.0% | |
| ATAGGTAGAAATGGGAACCT+AGG | - | chr3_1:56542632-56542651 | None:intergenic | 40.0% | |
| AAAATAGTGAGTAGCCGACT+TGG | + | chr3_1:56542783-56542802 | Msa0363890:intron | 40.0% | |
| ! | AAATAGTGAGTAGCCGACTT+GGG | + | chr3_1:56542784-56542803 | Msa0363890:intron | 40.0% |
| ! | ACCGCATAAACTTTTTACCG+TGG | + | chr3_1:56542849-56542868 | Msa0363890:intron | 40.0% |
| CCCACGGTAAAAAGTTTATG+CGG | - | chr3_1:56542853-56542872 | None:intergenic | 40.0% | |
| ! | CCGCATAAACTTTTTACCGT+GGG | + | chr3_1:56542850-56542869 | Msa0363890:intron | 40.0% |
| AAATAGTGAGCAGCCTTCTT+GGG | - | chr3_1:56542946-56542965 | None:intergenic | 40.0% | |
| AAAATAGTGAGCAGCCTTCT+TGG | - | chr3_1:56542947-56542966 | None:intergenic | 40.0% | |
| AACGTGAGTTAACATGCGTA+AGG | + | chr3_1:56543419-56543438 | Msa0363890:intron | 40.0% | |
| ACGTGAGTTAACATGCGTAA+GGG | + | chr3_1:56543420-56543439 | Msa0363890:intron | 40.0% | |
| ! | TTACTTTGGGAGTGAGCAAA+AGG | + | chr3_1:56543455-56543474 | Msa0363890:intron | 40.0% |
| CTTCTTCACTAACGTGAAAG+CGG | + | chr3_1:56543544-56543563 | Msa0363890:intron | 40.0% | |
| CAACTATGTTCCTCAACTCA+CGG | + | chr3_1:56543621-56543640 | Msa0363890:intron | 40.0% | |
| CTCCCACTTACGAATTTATG+CGG | + | chr3_1:56543646-56543665 | Msa0363890:intron | 40.0% | |
| TCCCACTTACGAATTTATGC+GGG | + | chr3_1:56543647-56543666 | Msa0363890:intron | 40.0% | |
| ACCCGCATAAATTCGTAAGT+GGG | - | chr3_1:56543651-56543670 | None:intergenic | 40.0% | |
| TACCCGCATAAATTCGTAAG+TGG | - | chr3_1:56543652-56543671 | None:intergenic | 40.0% | |
| GCATAGTTACAGAATTCGCT+GGG | - | chr3_1:56543761-56543780 | None:intergenic | 40.0% | |
| AGCATAGTTACAGAATTCGC+TGG | - | chr3_1:56543762-56543781 | None:intergenic | 40.0% | |
| TCTGACAAAATTGGCACAAG+AGG | + | chr3_1:56543814-56543833 | Msa0363890:intron | 40.0% | |
| CAAAATTGGCACAAGAGGTA+TGG | + | chr3_1:56543819-56543838 | Msa0363890:intron | 40.0% | |
| ! | GGGTAAACTTCATCCTTTTG+TGG | + | chr3_1:56543973-56543992 | Msa0363890:intron | 40.0% |
| ! | AACTTCATCCTTTTGTGGGA+AGG | + | chr3_1:56543978-56543997 | Msa0363890:intron | 40.0% |
| ! | ACTTCATCCTTTTGTGGGAA+GGG | + | chr3_1:56543979-56543998 | Msa0363890:intron | 40.0% |
| TTATAGGAGAACCTGGAGTA+GGG | + | chr3_1:56544062-56544081 | Msa0363890:intron | 40.0% | |
| ! | ATTGATGTTTTCCCTACTCC+AGG | - | chr3_1:56544076-56544095 | None:intergenic | 40.0% |
| ! | CTTGCTCAGAGAATTTTGAG+TGG | + | chr3_1:56544106-56544125 | Msa0363890:CDS | 40.0% |
| TGCTGGTATTGTGAAATTCG+TGG | + | chr3_1:56544198-56544217 | Msa0363890:CDS | 40.0% | |
| AGCTGGTATTGTGAAATTCG+TGG | + | chr3_1:56544242-56544261 | Msa0363890:intron | 40.0% | |
| AGCTGGTATTGTGAAATTCG+TGG | + | chr3_1:56544242-56544261 | Msa0363890:intron | 40.0% | |
| AGCTGGTATTGTGAAATTCG+TGG | + | chr3_1:56544242-56544261 | Msa0363890:intron | 40.0% | |
| !!! | TGTTTTTCAGGTGGTTGCAT+TGG | + | chr3_1:56544445-56544464 | Msa0363890:intron | 40.0% |
| ATTCGATGCAGAAACATCAG+AGG | + | chr3_1:56544592-56544611 | Msa0363890:CDS | 40.0% | |
| TTGAAACATGCCCTTGAAAG+AGG | + | chr3_1:56544635-56544654 | Msa0363890:CDS | 40.0% | |
| GATGGTTCAACCACTTTAAC+TGG | - | chr3_1:56544842-56544861 | None:intergenic | 40.0% | |
| CGATCGTTTCTTACCTGATA+AGG | + | chr3_1:56545081-56545100 | Msa0363890:CDS | 40.0% | |
| AGTGATGTACCAAAGGAAGA+AGG | + | chr3_1:56545337-56545356 | Msa0363890:CDS | 40.0% | |
| GCATGTCTTCTAAATTGAGG+AGG | - | chr3_1:56545369-56545388 | None:intergenic | 40.0% | |
| ATGCTTCACAAACACGTCAT+CGG | + | chr3_1:56545385-56545404 | Msa0363890:CDS | 40.0% | |
| CACAGTGCAGCTAGATTAAT+TGG | + | chr3_1:56545613-56545632 | Msa0363890:CDS | 40.0% | |
| CGAATTTCTCCGAATAGCTT+CGG | - | chr3_1:56545683-56545702 | None:intergenic | 40.0% | |
| ! | ATGGTGCTAGACCATTAAGA+AGG | + | chr3_1:56546133-56546152 | Msa0363890:CDS | 40.0% |
| GGAGAGAGAAAAGATATGGT+TGG | + | chr3_1:56546411-56546430 | Msa0363890:CDS | 40.0% | |
| GGAAAAATGTTGGACATGCT+TGG | + | chr3_1:56546453-56546472 | Msa0363890:CDS | 40.0% | |
| !! | GGTGATTCAAATGGGTTGAC+TGG | + | chr3_1:56540998-56541017 | Msa0363890:CDS | 45.0% |
| TAGGGAGCAAGTGATGAAGT+TGG | + | chr3_1:56541060-56541079 | Msa0363890:CDS | 45.0% | |
| ! | GAGCAAGTGATGAAGTTGGT+TGG | + | chr3_1:56541064-56541083 | Msa0363890:CDS | 45.0% |
| !! | GTGATGAAGTTGGTTGGTAG+AGG | + | chr3_1:56541070-56541089 | Msa0363890:CDS | 45.0% |
| !! | ATGAAGTTGGTTGGTAGAGG+TGG | + | chr3_1:56541073-56541092 | Msa0363890:CDS | 45.0% |
| CTCAAACATGCCAAGAGTCT+AGG | + | chr3_1:56541166-56541185 | Msa0363890:CDS | 45.0% | |
| ! | GGACACAATGCACCTACTTT+TGG | + | chr3_1:56541638-56541657 | Msa0363890:intron | 45.0% |
| CTTGAAGCAACCCCAAAAGT+AGG | - | chr3_1:56541653-56541672 | None:intergenic | 45.0% | |
| !!! | CTACTTTTGGGGTTGCTTCA+AGG | + | chr3_1:56541651-56541670 | Msa0363890:intron | 45.0% |
| !! | CTATGGTTCTGAGTCACAAC+AGG | - | chr3_1:56541963-56541982 | None:intergenic | 45.0% |
| ! | CACATGTTAAGTTGCGTAGG+GGG | - | chr3_1:56542477-56542496 | None:intergenic | 45.0% |
| ! | GCACATGTTAAGTTGCGTAG+GGG | - | chr3_1:56542478-56542497 | None:intergenic | 45.0% |
| GAGAATTAGAGGGAGAGAGT+GGG | - | chr3_1:56542697-56542716 | None:intergenic | 45.0% | |
| AGAGAATTAGAGGGAGAGAG+TGG | - | chr3_1:56542698-56542717 | None:intergenic | 45.0% | |
| !! | AATAGTGAGTAGCCGACTTG+GGG | + | chr3_1:56542785-56542804 | Msa0363890:intron | 45.0% |
| AATAGTGAGCAGCCTTCTTG+GGG | - | chr3_1:56542945-56542964 | None:intergenic | 45.0% | |
| ! | AATTGGCACAAGAGGTATGG+CGG | + | chr3_1:56543822-56543841 | Msa0363890:intron | 45.0% |
| CAGGTTCTCCTATAAGGCAA+GGG | - | chr3_1:56544057-56544076 | None:intergenic | 45.0% | |
| CTACTCCAGGTTCTCCTATA+AGG | - | chr3_1:56544063-56544082 | None:intergenic | 45.0% | |
| CTTATAGGAGAACCTGGAGT+AGG | + | chr3_1:56544061-56544080 | Msa0363890:intron | 45.0% | |
| GAATGAGCACAGAATGCACA+TGG | + | chr3_1:56544784-56544803 | Msa0363890:CDS | 45.0% | |
| GAAATTCTTAAAGGCCTCCG+CGG | + | chr3_1:56544878-56544897 | Msa0363890:CDS | 45.0% | |
| AATGCGACTCATATGTTCCG+CGG | - | chr3_1:56544898-56544917 | None:intergenic | 45.0% | |
| ACCAGTCAGTGATGTACCAA+AGG | + | chr3_1:56545330-56545349 | Msa0363890:CDS | 45.0% | |
| TCCTTTGGTACATCACTGAC+TGG | - | chr3_1:56545334-56545353 | None:intergenic | 45.0% | |
| ! | AGGTTTTCGCCTTCTTCCTT+TGG | - | chr3_1:56545349-56545368 | None:intergenic | 45.0% |
| TCGGTCTAAGAAACTGCAGA+AGG | + | chr3_1:56545458-56545477 | Msa0363890:CDS | 45.0% | |
| ! | AGATTAATTGGAGCACCTCC+TGG | + | chr3_1:56545625-56545644 | Msa0363890:CDS | 45.0% |
| !! | GATGATGGAAGACTCACAGA+TGG | + | chr3_1:56545775-56545794 | Msa0363890:CDS | 45.0% |
| GGAAGACTCACAGATGGAAA+AGG | + | chr3_1:56545781-56545800 | Msa0363890:CDS | 45.0% | |
| AATGGTCTAGCACCATAGCT+AGG | - | chr3_1:56546129-56546148 | None:intergenic | 45.0% | |
| !!! | AATTTTTAAAAGAATATATA+TGG | + | chr3_1:56541405-56541424 | Msa0363890:intron | 5.0% |
| TGGCTGCACAAAAGGAAGCA+AGG | + | chr3_1:56540924-56540943 | Msa0363890:CDS | 50.0% | |
| !! | AAGTTGGTTGGTAGAGGTGG+TGG | + | chr3_1:56541076-56541095 | Msa0363890:CDS | 50.0% |
| GGGTTGCTTCAAGGGTCTAA+TGG | + | chr3_1:56541660-56541679 | Msa0363890:intron | 50.0% | |
| GCTTCAAGGGTCTAATGGTG+TGG | + | chr3_1:56541665-56541684 | Msa0363890:intron | 50.0% | |
| TCGCAATTCGCTCTGATACG+CGG | + | chr3_1:56541992-56542011 | Msa0363890:intron | 50.0% | |
| ATTCGCTCTGATACGCGGTA+CGG | + | chr3_1:56541997-56542016 | Msa0363890:intron | 50.0% | |
| !!! | AAGTTGCGTAGGGGGCATTT+TGG | - | chr3_1:56542469-56542488 | None:intergenic | 50.0% |
| GAGTGGGAGGAGATAATGTG+AGG | - | chr3_1:56542681-56542700 | None:intergenic | 50.0% | |
| AATTAGAGGGAGAGAGTGGG+AGG | - | chr3_1:56542694-56542713 | None:intergenic | 50.0% | |
| GGGTTAAGAGTCTCTCTTGC+TGG | - | chr3_1:56543512-56543531 | None:intergenic | 50.0% | |
| ! | GAGAAGAGTACGAGCAAGAG+TGG | - | chr3_1:56543589-56543608 | None:intergenic | 50.0% |
| CGAACCAATTCGTGGTTCAC+CGG | + | chr3_1:56543731-56543750 | Msa0363890:intron | 50.0% | |
| TTGACCGGTGAACCACGAAT+TGG | - | chr3_1:56543738-56543757 | None:intergenic | 50.0% | |
| ! | ACAGAATTCGCTGGGTTGAC+CGG | - | chr3_1:56543753-56543772 | None:intergenic | 50.0% |
| ! | CACAAGAGGTATGGCGGTAA+TGG | + | chr3_1:56543828-56543847 | Msa0363890:intron | 50.0% |
| TGCTCTTCCCTTCCCACAAA+AGG | - | chr3_1:56543989-56544008 | None:intergenic | 50.0% | |
| ! | TTTTGTGGGAAGGGAAGAGC+AGG | + | chr3_1:56543988-56544007 | Msa0363890:intron | 50.0% |
| CCAGGTTCTCCTATAAGGCA+AGG | - | chr3_1:56544058-56544077 | None:intergenic | 50.0% | |
| CCTTGCCTTATAGGAGAACC+TGG | + | chr3_1:56544055-56544074 | Msa0363890:intron | 50.0% | |
| TTCATGTTCACCGGTCCTTC+AGG | + | chr3_1:56545493-56545512 | Msa0363890:CDS | 50.0% | |
| ! | TTTTCCTACGCCTGAAGGAC+CGG | - | chr3_1:56545506-56545525 | None:intergenic | 50.0% |
| ! | TCGGTTTTTCCTACGCCTGA+AGG | - | chr3_1:56545511-56545530 | None:intergenic | 50.0% |
| ! | GGTAGAGGTGGTGGTTGTAG+TGG | + | chr3_1:56541085-56541104 | Msa0363890:CDS | 55.0% |
| TTCGCTCTGATACGCGGTAC+GGG | + | chr3_1:56541998-56542017 | Msa0363890:intron | 55.0% | |
| TCTGATACGCGGTACGGGTA+CGG | + | chr3_1:56542003-56542022 | Msa0363890:intron | 55.0% | |
| ! | CTTCGGTACGCTTCGATTCG+TGG | + | chr3_1:56542076-56542095 | Msa0363890:intron | 55.0% |
| GGTCGATCACTTCCCCAAGT+CGG | - | chr3_1:56542800-56542819 | None:intergenic | 55.0% | |
| TTGGGGAAGTGATCGACCCT+TGG | + | chr3_1:56542802-56542821 | Msa0363890:intron | 55.0% | |
| TGGGGAAGTGATCGACCCTT+GGG | + | chr3_1:56542803-56542822 | Msa0363890:intron | 55.0% | |
| AGTGGGAGAACCGTGAGTTG+AGG | - | chr3_1:56543634-56543653 | None:intergenic | 55.0% | |
| GGTACGTGCGAACCAATTCG+TGG | + | chr3_1:56543723-56543742 | Msa0363890:intron | 55.0% | |
| TCAGGTGGTTGCATTGGACG+TGG | + | chr3_1:56544451-56544470 | Msa0363890:intron | 55.0% | |
| ACGAATCGCTCGGCAGATTG+TGG | - | chr3_1:56545428-56545447 | None:intergenic | 55.0% | |
| CTCTAGCACGACGAATCGCT+CGG | - | chr3_1:56545438-56545457 | None:intergenic | 55.0% | |
| GCGATTCGTCGTGCTAGAGT+CGG | + | chr3_1:56545439-56545458 | Msa0363890:CDS | 55.0% | |
| CGGTTAATTGACCGCCGTCA+CGG | - | chr3_1:56545663-56545682 | None:intergenic | 55.0% | |
| CTGATACGCGGTACGGGTAC+GGG | + | chr3_1:56542004-56542023 | Msa0363890:intron | 60.0% | |
| GCGACTCATATGTTCCGCGG+AGG | - | chr3_1:56544895-56544914 | None:intergenic | 60.0% | |
| TTCACCGGTCCTTCAGGCGT+AGG | + | chr3_1:56545499-56545518 | Msa0363890:CDS | 60.0% | |
| TCACGGAAACCGGCATAGCC+AGG | - | chr3_1:56545646-56545665 | None:intergenic | 60.0% | |
| !! | GGCTATGCCGGTTTCCGTGA+CGG | + | chr3_1:56545646-56545665 | Msa0363890:CDS | 60.0% |
| !! | TATGCCGGTTTCCGTGACGG+CGG | + | chr3_1:56545649-56545668 | Msa0363890:CDS | 60.0% |
| TTGACCGCCGTCACGGAAAC+CGG | - | chr3_1:56545656-56545675 | None:intergenic | 60.0% | |
| ! | GGAGCACCTCCTGGCTATGC+CGG | + | chr3_1:56545634-56545653 | Msa0363890:CDS | 65.0% |
| CGGAAACCGGCATAGCCAGG+AGG | - | chr3_1:56545643-56545662 | None:intergenic | 65.0% | |
| GCGGTACGGGTACGGGTTCG+TGG | + | chr3_1:56542011-56542030 | Msa0363890:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56540884 | 56546614 | 56540884 | ID=Msa0363890;Name=Msa0363890 |
| chr3_1 | mRNA | 56540884 | 56546614 | 56540884 | ID=Msa0363890-mRNA-1;Parent=Msa0363890;Name=Msa0363890-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.6|0.66|1|1|1|6|120|744 |
| chr3_1 | exon | 56540884 | 56541187 | 56540884 | ID=Msa0363890-mRNA-1:exon:10492;Parent=Msa0363890-mRNA-1 |
| chr3_1 | exon | 56544068 | 56544246 | 56544068 | ID=Msa0363890-mRNA-1:exon:10493;Parent=Msa0363890-mRNA-1 |
| chr3_1 | exon | 56544455 | 56544667 | 56544455 | ID=Msa0363890-mRNA-1:exon:10494;Parent=Msa0363890-mRNA-1 |
| chr3_1 | exon | 56544764 | 56544981 | 56544764 | ID=Msa0363890-mRNA-1:exon:10495;Parent=Msa0363890-mRNA-1 |
| chr3_1 | exon | 56545081 | 56545156 | 56545081 | ID=Msa0363890-mRNA-1:exon:10496;Parent=Msa0363890-mRNA-1 |
| chr3_1 | exon | 56545250 | 56546614 | 56545250 | ID=Msa0363890-mRNA-1:exon:10497;Parent=Msa0363890-mRNA-1 |
| chr3_1 | CDS | 56540884 | 56541187 | 56540884 | ID=Msa0363890-mRNA-1:cds;Parent=Msa0363890-mRNA-1 |
| chr3_1 | CDS | 56544068 | 56544246 | 56544068 | ID=Msa0363890-mRNA-1:cds;Parent=Msa0363890-mRNA-1 |
| chr3_1 | CDS | 56544455 | 56544667 | 56544455 | ID=Msa0363890-mRNA-1:cds;Parent=Msa0363890-mRNA-1 |
| chr3_1 | CDS | 56544764 | 56544981 | 56544764 | ID=Msa0363890-mRNA-1:cds;Parent=Msa0363890-mRNA-1 |
| chr3_1 | CDS | 56545081 | 56545156 | 56545081 | ID=Msa0363890-mRNA-1:cds;Parent=Msa0363890-mRNA-1 |
| chr3_1 | CDS | 56545250 | 56546494 | 56545250 | ID=Msa0363890-mRNA-1:cds;Parent=Msa0363890-mRNA-1 |
| chr3_1 | three_prime_UTR | 56546495 | 56546614 | 56546495 | ID=Msa0363890-mRNA-1:three_prime_utr;Parent=Msa0363890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
