Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486600 | KEH34100.1 | 76.062 | 777 | 100 | 4 | 5 | 744 | 83 | 810 | 0.0 | 1146 |
| Msa0486600 | KEH34100.1 | 85.470 | 117 | 17 | 0 | 1 | 117 | 1 | 117 | 2.59e-51 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486600 | sp|P31542|CLPAB_SOLLC | 49.219 | 768 | 260 | 13 | 5 | 672 | 170 | 907 | 0.0 | 663 |
| Msa0486600 | sp|P31542|CLPAB_SOLLC | 47.664 | 107 | 53 | 1 | 1 | 107 | 91 | 194 | 1.22e-19 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486600 | A0A072V7F1 | 76.062 | 777 | 100 | 4 | 5 | 744 | 83 | 810 | 0.0 | 1146 |
| Msa0486600 | A0A072V7F1 | 85.470 | 117 | 17 | 0 | 1 | 117 | 1 | 117 | 1.24e-51 | 203 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201070 | Msa0486600 | 0.831265 | 1.840765e-55 | -8.615850e-47 |
| Msa0411510 | Msa0486600 | 0.879956 | 8.159285e-70 | -8.615850e-47 |
| Msa0455670 | Msa0486600 | 0.993064 | 3.210695e-197 | -8.615850e-47 |
| Msa0258760 | Msa0486600 | 0.831548 | 1.567887e-55 | -8.615850e-47 |
| Msa0323080 | Msa0486600 | 0.808585 | 2.880846e-50 | -8.615850e-47 |
| Msa0344830 | Msa0486600 | 0.810190 | 1.303820e-50 | -8.615850e-47 |
| Msa0363890 | Msa0486600 | 0.981157 | 6.547865e-152 | -8.615850e-47 |
| Msa0486590 | Msa0486600 | 0.916165 | 2.471844e-85 | -8.615850e-47 |
| Msa0486600 | Msa0519000 | 0.805861 | 1.087995e-49 | -8.615850e-47 |
| Msa0486600 | Msa0990960 | 0.802416 | 5.667940e-49 | -8.615850e-47 |
| Msa0486600 | Msa0999960 | -0.804752 | 1.857523e-49 | -8.615850e-47 |
| Msa0486600 | Msa1137600 | 0.808345 | 3.241749e-50 | -8.615850e-47 |
| Msa0486600 | Msa1261250 | 0.815061 | 1.121076e-51 | -8.615850e-47 |
| Msa0486600 | Msa1451620 | -0.812809 | 3.516573e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486600 | MtrunA17_Chr3g0102771 | 86.025 | 644 | 32 | 3 | 101 | 744 | 251 | 836 | 0.0 | 1104 |
| Msa0486600 | MtrunA17_Chr3g0102771 | 85.470 | 117 | 17 | 0 | 1 | 117 | 1 | 117 | 2.84e-55 | 204 |
| Msa0486600 | MtrunA17_Chr8g0385811 | 48.568 | 768 | 265 | 13 | 5 | 672 | 174 | 911 | 0.0 | 652 |
| Msa0486600 | MtrunA17_Chr8g0385811 | 47.664 | 107 | 53 | 1 | 1 | 107 | 95 | 198 | 9.89e-21 | 97.8 |
| Msa0486600 | MtrunA17_Chr3g0134631 | 47.917 | 768 | 270 | 13 | 5 | 672 | 175 | 912 | 0.0 | 644 |
| Msa0486600 | MtrunA17_Chr3g0134631 | 48.598 | 107 | 52 | 1 | 1 | 107 | 96 | 199 | 7.07e-21 | 98.2 |
| Msa0486600 | MtrunA17_Chr3g0131711 | 46.203 | 777 | 288 | 16 | 5 | 681 | 170 | 916 | 0.0 | 613 |
| Msa0486600 | MtrunA17_Chr3g0131711 | 47.664 | 107 | 53 | 1 | 1 | 107 | 91 | 194 | 8.73e-21 | 97.8 |
| Msa0486600 | MtrunA17_Chr6g0454071 | 48.910 | 321 | 161 | 1 | 346 | 663 | 617 | 937 | 9.65e-103 | 337 |
| Msa0486600 | MtrunA17_Chr6g0454071 | 39.912 | 228 | 106 | 3 | 101 | 326 | 283 | 481 | 3.61e-40 | 159 |
| Msa0486600 | MtrunA17_Chr7g0218421 | 48.632 | 329 | 158 | 3 | 342 | 663 | 617 | 941 | 2.32e-102 | 336 |
| Msa0486600 | MtrunA17_Chr7g0218421 | 31.548 | 336 | 163 | 6 | 24 | 326 | 184 | 485 | 1.85e-40 | 160 |
| Msa0486600 | MtrunA17_Chr3g0131351 | 47.059 | 340 | 169 | 4 | 342 | 672 | 616 | 953 | 5.38e-102 | 335 |
| Msa0486600 | MtrunA17_Chr3g0131351 | 40.081 | 247 | 113 | 4 | 101 | 341 | 342 | 559 | 2.26e-40 | 159 |
| Msa0486600 | MtrunA17_Chr4g0061371 | 47.205 | 322 | 165 | 3 | 341 | 660 | 534 | 852 | 1.88e-100 | 330 |
| Msa0486600 | MtrunA17_Chr4g0061371 | 32.754 | 345 | 172 | 7 | 11 | 326 | 91 | 404 | 1.72e-43 | 169 |
| Msa0486600 | MtrunA17_Chr3g0137071 | 46.769 | 325 | 169 | 1 | 342 | 662 | 625 | 949 | 7.07e-99 | 327 |
| Msa0486600 | MtrunA17_Chr3g0137071 | 41.667 | 228 | 102 | 3 | 101 | 326 | 295 | 493 | 3.13e-43 | 168 |
| Msa0486600 | MtrunA17_Chr7g0225161 | 39.693 | 456 | 254 | 8 | 224 | 675 | 428 | 866 | 8.05e-94 | 312 |
| Msa0486600 | MtrunA17_Chr7g0225161 | 31.700 | 347 | 173 | 10 | 11 | 326 | 91 | 404 | 1.88e-39 | 156 |
| Msa0486600 | MtrunA17_Chr2g0329561 | 40.498 | 321 | 183 | 3 | 350 | 669 | 143 | 456 | 1.11e-76 | 255 |
| Msa0486600 | MtrunA17_Chr2g0277781 | 41.724 | 290 | 158 | 4 | 350 | 636 | 2 | 283 | 3.52e-73 | 239 |
| Msa0486600 | MtrunA17_Chr3g0135231 | 34.831 | 445 | 161 | 13 | 5 | 359 | 161 | 566 | 6.46e-58 | 208 |
| Msa0486600 | MtrunA17_Chr3g0135231 | 44.068 | 118 | 65 | 1 | 472 | 589 | 534 | 650 | 1.25e-20 | 97.1 |
| Msa0486600 | MtrunA17_Chr3g0135231 | 40.945 | 127 | 65 | 2 | 1 | 120 | 82 | 205 | 8.80e-19 | 90.9 |
| Msa0486600 | MtrunA17_Chr1g0188061 | 65.882 | 85 | 29 | 0 | 439 | 523 | 233 | 317 | 3.43e-29 | 119 |
| Msa0486600 | MtrunA17_Chr7g0260931 | 46.429 | 84 | 45 | 0 | 347 | 430 | 11 | 94 | 2.05e-20 | 86.7 |
| Msa0486600 | MtrunA17_Chr2g0277771 | 34.559 | 136 | 79 | 4 | 527 | 660 | 1 | 128 | 6.01e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486600 | AT5G50920.1 | 48.370 | 767 | 267 | 14 | 5 | 672 | 173 | 909 | 0.0 | 653 |
| Msa0486600 | AT5G50920.1 | 47.664 | 107 | 53 | 1 | 1 | 107 | 94 | 197 | 1.08e-20 | 98.2 |
| Msa0486600 | AT3G48870.2 | 47.005 | 768 | 277 | 13 | 5 | 672 | 162 | 899 | 0.0 | 641 |
| Msa0486600 | AT3G48870.2 | 47.664 | 107 | 53 | 1 | 1 | 107 | 83 | 186 | 9.14e-21 | 98.2 |
| Msa0486600 | AT3G48870.1 | 47.005 | 768 | 277 | 13 | 5 | 672 | 193 | 930 | 0.0 | 639 |
| Msa0486600 | AT3G48870.1 | 47.664 | 107 | 53 | 1 | 1 | 107 | 114 | 217 | 1.04e-20 | 98.2 |
| Msa0486600 | AT3G48870.4 | 47.005 | 768 | 277 | 13 | 5 | 672 | 193 | 930 | 0.0 | 639 |
| Msa0486600 | AT3G48870.4 | 47.664 | 107 | 53 | 1 | 1 | 107 | 114 | 217 | 1.04e-20 | 98.2 |
| Msa0486600 | AT3G48870.3 | 47.005 | 768 | 277 | 13 | 5 | 672 | 193 | 930 | 0.0 | 639 |
| Msa0486600 | AT3G48870.3 | 47.664 | 107 | 53 | 1 | 1 | 107 | 114 | 217 | 1.04e-20 | 98.2 |
| Msa0486600 | AT5G51070.1 | 36.582 | 790 | 347 | 13 | 5 | 670 | 168 | 927 | 4.78e-158 | 483 |
| Msa0486600 | AT5G15450.1 | 48.598 | 321 | 163 | 1 | 345 | 663 | 614 | 934 | 4.81e-103 | 338 |
| Msa0486600 | AT5G15450.1 | 40.351 | 228 | 105 | 3 | 101 | 326 | 281 | 479 | 1.06e-40 | 161 |
| Msa0486600 | AT2G25140.1 | 48.615 | 325 | 163 | 2 | 342 | 662 | 616 | 940 | 1.53e-101 | 334 |
| Msa0486600 | AT2G25140.1 | 41.228 | 228 | 103 | 3 | 101 | 326 | 286 | 484 | 1.77e-42 | 166 |
| Msa0486600 | AT1G74310.1 | 48.418 | 316 | 158 | 3 | 347 | 660 | 537 | 849 | 3.30e-100 | 330 |
| Msa0486600 | AT1G74310.1 | 31.594 | 345 | 176 | 7 | 11 | 326 | 91 | 404 | 1.15e-40 | 160 |
| Msa0486600 | AT1G74310.2 | 49.821 | 279 | 135 | 3 | 347 | 623 | 537 | 812 | 9.66e-91 | 302 |
| Msa0486600 | AT1G74310.2 | 31.594 | 345 | 176 | 7 | 11 | 326 | 91 | 404 | 1.03e-40 | 160 |
| Msa0486600 | AT4G14670.1 | 35.461 | 282 | 133 | 6 | 50 | 325 | 130 | 368 | 2.07e-39 | 155 |
| Msa0486600 | AT4G14670.1 | 48.819 | 127 | 65 | 0 | 341 | 467 | 496 | 622 | 2.51e-33 | 136 |
| Msa0486600 | AT3G45450.1 | 46.429 | 84 | 42 | 1 | 1 | 84 | 1 | 81 | 3.48e-14 | 75.1 |
Find 113 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTAGCTACAAACTATTT+TGG | 0.166362 | 3_4:-4635782 | Msa0486600:CDS |
| TTTCATTGACATTTAGGTTT+AGG | 0.195139 | 3_4:-4635247 | Msa0486600:CDS |
| TTCAACATGTTATTTCTTCT+TGG | 0.203026 | 3_4:-4636024 | Msa0486600:CDS |
| TTCATTGACATTTAGGTTTA+GGG | 0.218363 | 3_4:-4635246 | Msa0486600:CDS |
| TACATCTTTCATTGACATTT+AGG | 0.220547 | 3_4:-4635253 | Msa0486600:CDS |
| TTGTATAATTTATAACTATA+TGG | 0.249293 | 3_4:-4634769 | Msa0486600:three_prime_UTR |
| CACAGTGCAGCTAGATTAAT+TGG | 0.252437 | 3_4:-4635710 | Msa0486600:CDS |
| CATATACTACTTGGGATTCT+TGG | 0.268673 | 3_4:-4640293 | Msa0486600:CDS |
| CTTGCAATAGTCCTTCTTAA+TGG | 0.273975 | 3_4:+4635179 | None:intergenic |
| GATGGTTCAACCACTTTAAC+TGG | 0.293201 | 3_4:+4636484 | None:intergenic |
| GTTTGTCTTGTAAAGATATA+AGG | 0.297746 | 3_4:-4640163 | Msa0486600:CDS |
| AGGGATTATGTGATTCAAAA+TGG | 0.298678 | 3_4:-4635227 | Msa0486600:CDS |
| GAAACCATAGAAATTCTTAA+AGG | 0.304814 | 3_4:-4636454 | Msa0486600:CDS |
| ATCAAATCAATTGCCTTATC+AGG | 0.314089 | 3_4:+4636229 | None:intergenic |
| GTCAATTAACCGAAGCTATT+CGG | 0.314183 | 3_4:-4635652 | Msa0486600:CDS |
| AGCTAATGCATTGGCTAATT+CGG | 0.325948 | 3_4:+4635796 | None:intergenic |
| GAGGCCTTTAAGAATTTCTA+TGG | 0.327315 | 3_4:+4636450 | None:intergenic |
| CATGCATGACAAATAAAATA+AGG | 0.347704 | 3_4:+4634717 | None:intergenic |
| CGATCGTTTCTTACCTGATA+AGG | 0.357419 | 3_4:-4636242 | Msa0486600:CDS |
| ATGTGCAAAGAAAGTAATTA+TGG | 0.364066 | 3_4:-4640366 | Msa0486600:CDS |
| TTCATGTTCACCGGTCCTTC+AGG | 0.371875 | 3_4:-4635830 | Msa0486600:CDS |
| GGGATTCTTGGTGATTCAAA+TGG | 0.372242 | 3_4:-4640281 | Msa0486600:CDS |
| CTTGAATTACACCTCTTTCA+AGG | 0.373725 | 3_4:+4636677 | None:intergenic |
| AGTAATTATGGCTGCACAAA+AGG | 0.386618 | 3_4:-4640354 | Msa0486600:CDS |
| ATCAAATCAAGAATCTTCTA+AGG | 0.387500 | 3_4:-4636830 | Msa0486600:CDS |
| CATGTTATTTCTTCTTGGAT+TGG | 0.389250 | 3_4:-4636019 | Msa0486600:CDS |
| AACCTATTTGTTACTTGTGC+TGG | 0.389558 | 3_4:-4637098 | Msa0486600:CDS |
| ATGCTACAAATTCTTGATGA+TGG | 0.390372 | 3_4:-4635563 | Msa0486600:CDS |
| ATTATAATGACTAGCAATCT+TGG | 0.395448 | 3_4:-4635491 | Msa0486600:CDS |
| TTGACCGCCGTCACGGAAAC+CGG | 0.402934 | 3_4:+4635670 | None:intergenic |
| TGGAATTTCATGCAATTTGA+TGG | 0.409908 | 3_4:-4634892 | Msa0486600:CDS |
| TACCAGCACAAGTAACAAAT+AGG | 0.415835 | 3_4:+4637096 | None:intergenic |
| GATGTTAAGGAAAGAAATAA+AGG | 0.443438 | 3_4:-4635129 | Msa0486600:CDS |
| TTGAAACATGCCCTTGAAAG+AGG | 0.447531 | 3_4:-4636688 | Msa0486600:CDS |
| GGTAGAGGTGGTGGTTGTAG+TGG | 0.448297 | 3_4:-4640185 | Msa0486600:CDS |
| AATATTTCAACCAGTTAAAG+TGG | 0.449508 | 3_4:-4636494 | Msa0486600:CDS |
| TGATGGAGAGAGAAAAGATA+TGG | 0.451204 | 3_4:-4634916 | Msa0486600:CDS |
| CGAATTTCTCCGAATAGCTT+CGG | 0.452426 | 3_4:+4635643 | None:intergenic |
| CCTTGCCTTATAGGAGAACC+TGG | 0.452712 | 3_4:-4637224 | Msa0486600:intron |
| ATTGATTTGATTGATGAAGC+TGG | 0.454157 | 3_4:-4636217 | Msa0486600:CDS |
| CATTGGCTGAAAAGATGTTA+AGG | 0.458668 | 3_4:-4635142 | Msa0486600:CDS |
| GTGAACATGAAACTTGCAAT+AGG | 0.461655 | 3_4:+4635842 | None:intergenic |
| AGCACAGAACATATACTACT+TGG | 0.463548 | 3_4:-4640302 | Msa0486600:CDS |
| TAGGGAGCAAGTGATGAAGT+TGG | 0.470468 | 3_4:-4640210 | Msa0486600:CDS |
| CTTGGTAACAACATTATTGA+AGG | 0.473402 | 3_4:-4635473 | Msa0486600:CDS |
| TCACGGAAACCGGCATAGCC+AGG | 0.477017 | 3_4:+4635680 | None:intergenic |
| AAGTTGGTTGGTAGAGGTGG+TGG | 0.480856 | 3_4:-4640194 | Msa0486600:CDS |
| GGAATTTCATGCAATTTGAT+GGG | 0.482208 | 3_4:-4634891 | Msa0486600:CDS |
| GCAACTTATATATATAGTTA+TGG | 0.484707 | 3_4:+4634834 | None:intergenic |
| TCCTTTGGTACATCACTGAC+TGG | 0.488002 | 3_4:+4635992 | None:intergenic |
| GGCTATGCCGGTTTCCGTGA+CGG | 0.488783 | 3_4:-4635677 | Msa0486600:CDS |
| TTGAATTACACCTCTTTCAA+GGG | 0.490421 | 3_4:+4636678 | None:intergenic |
| AGATTAATTGGAGCACCTCC+TGG | 0.491051 | 3_4:-4635698 | Msa0486600:CDS |
| AATGAATTTACCTAGACTCT+TGG | 0.492507 | 3_4:+4640094 | None:intergenic |
| CAAAAGGAAGCAAGGTTTGT+GGG | 0.497205 | 3_4:-4640338 | Msa0486600:CDS |
| GGATTCTTGGTGATTCAAAT+GGG | 0.503736 | 3_4:-4640280 | Msa0486600:CDS |
| AAGAATCAAGTGTTTAATCA+AGG | 0.508788 | 3_4:-4636806 | Msa0486600:CDS |
| ATAGTTTGTAGCTAATGCAT+TGG | 0.510870 | 3_4:+4635787 | None:intergenic |
| TGCTGGTATTGTGAAATTCG+TGG | 0.517261 | 3_4:-4637081 | Msa0486600:CDS |
| ATTAGATATGAGTGAGTACA+TGG | 0.518212 | 3_4:-4635738 | Msa0486600:CDS |
| AGAACTAACAAAATTGGAAG+TGG | 0.523751 | 3_4:-4635333 | Msa0486600:CDS |
| ATTTGTCTCAGCAATATGTA+AGG | 0.523988 | 3_4:-4636363 | Msa0486600:intron |
| AATGGATATAATCCTAGCTA+TGG | 0.526824 | 3_4:-4635209 | Msa0486600:CDS |
| GGAGCACCTCCTGGCTATGC+CGG | 0.527334 | 3_4:-4635689 | Msa0486600:CDS |
| CTTATAGGAGAACCTGGAGT+AGG | 0.527810 | 3_4:-4637218 | Msa0486600:intron |
| TCTATGGTTTCTTCAACAGA+TGG | 0.528707 | 3_4:+4636466 | None:intergenic |
| GTTGGTGATTATTTAGCTGA+TGG | 0.528783 | 3_4:-4634933 | Msa0486600:CDS |
| GTTGGTGATTATTTAGCTGA+TGG | 0.528783 | 3_4:-4634993 | Msa0486600:CDS |
| ATTGCAAGTTTCATGTTCAC+CGG | 0.535119 | 3_4:-4635839 | Msa0486600:CDS |
| GAAGCATGTCTTCTAAATTG+AGG | 0.535628 | 3_4:+4635954 | None:intergenic |
| GGTGATTCAAATGGGTTGAC+TGG | 0.536125 | 3_4:-4640272 | Msa0486600:CDS |
| GGAAGACTCACAGATGGAAA+AGG | 0.536149 | 3_4:-4635542 | Msa0486600:CDS |
| GGAGAGAGAAAAGATATGGT+TGG | 0.539804 | 3_4:-4634912 | Msa0486600:CDS |
| TCTGTTGATCATTCAGATGT+TGG | 0.553274 | 3_4:-4634951 | Msa0486600:CDS |
| TCTGTTGATCATTCAGATGT+TGG | 0.553274 | 3_4:-4635011 | Msa0486600:CDS |
| ACGAATCGCTCGGCAGATTG+TGG | 0.558075 | 3_4:+4635898 | None:intergenic |
| CTCAAACATGCCAAGAGTCT+AGG | 0.560172 | 3_4:-4640104 | Msa0486600:intron |
| TGTTCAACTTTGTCATGCAA+AGG | 0.564537 | 3_4:-4636188 | Msa0486600:intron |
| TTATAGGAGAACCTGGAGTA+GGG | 0.567197 | 3_4:-4637217 | Msa0486600:intron |
| GTGATGAAGTTGGTTGGTAG+AGG | 0.569417 | 3_4:-4640200 | Msa0486600:CDS |
| AATGGTCTAGCACCATAGCT+AGG | 0.571100 | 3_4:+4635197 | None:intergenic |
| CGGTTAATTGACCGCCGTCA+CGG | 0.572693 | 3_4:+4635663 | None:intergenic |
| GAGCAAGTGATGAAGTTGGT+TGG | 0.572864 | 3_4:-4640206 | Msa0486600:CDS |
| TCAGGTGGTTGCATTGGACG+TGG | 0.573331 | 3_4:-4636872 | Msa0486600:intron |
| ATGAAGTTGGTTGGTAGAGG+TGG | 0.573783 | 3_4:-4640197 | Msa0486600:CDS |
| GTTGATATCAATGTTGATGA+GGG | 0.577273 | 3_4:-4635089 | Msa0486600:CDS |
| AGTGATGTACCAAAGGAAGA+AGG | 0.581553 | 3_4:-4635986 | Msa0486600:CDS |
| TTGGTAACAACATTATTGAA+GGG | 0.582740 | 3_4:-4635472 | Msa0486600:CDS |
| TTAAGGAAAGAAATAAAGGA+AGG | 0.583157 | 3_4:-4635125 | Msa0486600:CDS |
| ACAAAAGGAAGCAAGGTTTG+TGG | 0.584334 | 3_4:-4640339 | Msa0486600:CDS |
| GCACAGAACATATACTACTT+GGG | 0.584965 | 3_4:-4640301 | Msa0486600:CDS |
| AATCTACGTTAGTTACAAGC+TGG | 0.587467 | 3_4:-4637054 | Msa0486600:intron |
| ACCAGTCAGTGATGTACCAA+AGG | 0.593951 | 3_4:-4635993 | Msa0486600:CDS |
| TGGCTGCACAAAAGGAAGCA+AGG | 0.598708 | 3_4:-4640346 | Msa0486600:CDS |
| GATGATGGAAGACTCACAGA+TGG | 0.603024 | 3_4:-4635548 | Msa0486600:CDS |
| GCATGTCTTCTAAATTGAGG+AGG | 0.605380 | 3_4:+4635957 | None:intergenic |
| ATGCTTCACAAACACGTCAT+CGG | 0.606617 | 3_4:-4635938 | Msa0486600:CDS |
| TGTTGATATCAATGTTGATG+AGG | 0.608337 | 3_4:-4635090 | Msa0486600:CDS |
| CTCTAGCACGACGAATCGCT+CGG | 0.613183 | 3_4:+4635888 | None:intergenic |
| TTCACCGGTCCTTCAGGCGT+AGG | 0.614407 | 3_4:-4635824 | Msa0486600:CDS |
| ATGGTGCTAGACCATTAAGA+AGG | 0.621925 | 3_4:-4635190 | Msa0486600:CDS |
| GGGAAAACATCAATCATACA+TGG | 0.622271 | 3_4:-4637197 | Msa0486600:CDS |
| GCGATTCGTCGTGCTAGAGT+CGG | 0.623561 | 3_4:-4635884 | Msa0486600:CDS |
| ATCAAGGAAATTGAACTAAG+CGG | 0.638205 | 3_4:-4636790 | Msa0486600:CDS |
| GAATGAGCACAGAATGCACA+TGG | 0.644675 | 3_4:-4636539 | Msa0486600:CDS |
| TCGGTCTAAGAAACTGCAGA+AGG | 0.646351 | 3_4:-4635865 | Msa0486600:CDS |
| CAAAATGTATGCGAAACTGT+CGG | 0.646661 | 3_4:+4636708 | None:intergenic |
| ATTCGATGCAGAAACATCAG+AGG | 0.684166 | 3_4:-4636731 | Msa0486600:CDS |
| AATGCGACTCATATGTTCCG+CGG | 0.684640 | 3_4:+4636428 | None:intergenic |
| GAAATTCTTAAAGGCCTCCG+CGG | 0.691862 | 3_4:-4636445 | Msa0486600:CDS |
| TATGCCGGTTTCCGTGACGG+CGG | 0.702517 | 3_4:-4635674 | Msa0486600:CDS |
| CGGAAACCGGCATAGCCAGG+AGG | 0.705177 | 3_4:+4635683 | None:intergenic |
| GCGACTCATATGTTCCGCGG+AGG | 0.708714 | 3_4:+4636431 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAAATTAATATTTGAT+TGG | - | chr3_4:4635337-4635356 | Msa0486600:CDS | 10.0% |
| !! | TTTCAAATTAATATTTGATT+GGG | - | chr3_4:4635338-4635357 | Msa0486600:CDS | 10.0% |
| !!! | ATATAACAATAAAATTGTTT+TGG | - | chr3_4:4636068-4636087 | Msa0486600:CDS | 10.0% |
| !!! | ATATAACAATAAAATTGTTT+TGG | - | chr3_4:4636068-4636087 | Msa0486600:CDS | 10.0% |
| !! | TAATGTAAACAAAATAATTT+CGG | - | chr3_4:4637056-4637075 | Msa0486600:CDS | 10.0% |
| !! | TTGTATAATTTATAACTATA+TGG | - | chr3_4:4640348-4640367 | Msa0486600:CDS | 10.0% |
| !!! | AATTGATTTTAATGTTAGTA+GGG | - | chr3_4:4634889-4634908 | Msa0486600:CDS | 15.0% |
| !! | AATTTGTCCTTAAAATTATA+TGG | + | chr3_4:4635209-4635228 | None:intergenic | 15.0% |
| !! | AAATTAAACCAAATTGATTA+GGG | - | chr3_4:4635361-4635380 | Msa0486600:CDS | 15.0% |
| !! | TGTATTACATATATGAATTA+TGG | - | chr3_4:4637752-4637771 | Msa0486600:intron | 15.0% |
| !!! | TAAAAAGTGTTTTTTTTTGT+AGG | - | chr3_4:4637790-4637809 | Msa0486600:intron | 15.0% |
| !!! | AAAAAGTGTTTTTTTTTGTA+GGG | - | chr3_4:4637791-4637810 | Msa0486600:intron | 15.0% |
| !!! | TAATAATTACTTTGTTTTTC+AGG | - | chr3_4:4638227-4638246 | Msa0486600:intron | 15.0% |
| !! | TAGTATATAAGACTAATTAT+TGG | + | chr3_4:4638513-4638532 | None:intergenic | 15.0% |
| !! | ATTTATAATTCTCAAATGTT+TGG | - | chr3_4:4638980-4638999 | Msa0486600:intron | 15.0% |
| !! | TATTGATCATAAAAAGAATT+TGG | - | chr3_4:4639691-4639710 | Msa0486600:intron | 15.0% |
| !!! | TTTTAAAGAACTAACAAAAT+TGG | - | chr3_4:4639778-4639797 | Msa0486600:intron | 15.0% |
| !!! | GAATTGATTTTAATGTTAGT+AGG | - | chr3_4:4634888-4634907 | Msa0486600:CDS | 20.0% |
| !! | AGACTAATGTTTCAAATTTA+TGG | - | chr3_4:4635143-4635162 | Msa0486600:CDS | 20.0% |
| !! | GACTAATGTTTCAAATTTAT+GGG | - | chr3_4:4635144-4635163 | Msa0486600:CDS | 20.0% |
| !!! | TCATTCTAAAATTTTGTTCA+AGG | - | chr3_4:4635168-4635187 | Msa0486600:CDS | 20.0% |
| !!! | TTAATTTGAAAAGCATTCAT+AGG | + | chr3_4:4635329-4635348 | None:intergenic | 20.0% |
| !! | GAAATTAAACCAAATTGATT+AGG | - | chr3_4:4635360-4635379 | Msa0486600:CDS | 20.0% |
| !! | AGAAGATTCAAAGAATAAAA+TGG | - | chr3_4:4635725-4635744 | Msa0486600:CDS | 20.0% |
| !! | GAAGATTCAAAGAATAAAAT+GGG | - | chr3_4:4635726-4635745 | Msa0486600:CDS | 20.0% |
| !! | AGAATAATTCGATACATATA+GGG | - | chr3_4:4635892-4635911 | Msa0486600:CDS | 20.0% |
| !! | ATAGCTTACTATATTTAGTA+AGG | + | chr3_4:4635960-4635979 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAATATTCTCTT+TGG | - | chr3_4:4636581-4636600 | Msa0486600:intron | 20.0% |
| !!! | TTTTCTTCAATATTCTCTTT+GGG | - | chr3_4:4636582-4636601 | Msa0486600:intron | 20.0% |
| !!! | TACTTATTTTCTCCTTTTTA+GGG | + | chr3_4:4636844-4636863 | None:intergenic | 20.0% |
| !! | CAAATATACACTATATACAA+AGG | + | chr3_4:4638548-4638567 | None:intergenic | 20.0% |
| !!! | TGGTTGAAATATTCTTTTTA+AGG | + | chr3_4:4638616-4638635 | None:intergenic | 20.0% |
| !! | AAATGTTTGGATTAATCAAA+TGG | - | chr3_4:4638993-4639012 | Msa0486600:intron | 20.0% |
| !! | AATGTTTGGATTAATCAAAT+GGG | - | chr3_4:4638994-4639013 | Msa0486600:intron | 20.0% |
| !! | TCATAAAAAGAATTTGGTTA+TGG | - | chr3_4:4639697-4639716 | Msa0486600:intron | 20.0% |
| !! | TGAATCCAAAAAATGTTAAA+AGG | - | chr3_4:4640065-4640084 | Msa0486600:intron | 20.0% |
| !! | GAATCCAAAAAATGTTAAAA+GGG | - | chr3_4:4640066-4640085 | Msa0486600:intron | 20.0% |
| !! | GCAACTTATATATATAGTTA+TGG | + | chr3_4:4640286-4640305 | None:intergenic | 20.0% |
| ! | ATGTGCAAAGAAAGTAATTA+TGG | - | chr3_4:4634751-4634770 | Msa0486600:three_prime_UTR | 25.0% |
| ! | GTTTGTCTTGTAAAGATATA+AGG | - | chr3_4:4634954-4634973 | Msa0486600:CDS | 25.0% |
| ! | GTCCTTAAAATTATATGGTA+CGG | + | chr3_4:4635204-4635223 | None:intergenic | 25.0% |
| ! | TTTACTTTCCCTAATCAATT+TGG | + | chr3_4:4635372-4635391 | None:intergenic | 25.0% |
| ! | ATAGAGTGAAAGAAATGAAT+TGG | + | chr3_4:4635421-4635440 | None:intergenic | 25.0% |
| ! | ACTCAATTGATACAAAATCA+AGG | - | chr3_4:4635537-4635556 | Msa0486600:CDS | 25.0% |
| ! | TTTCTAGATTCTCTTTACAT+TGG | + | chr3_4:4635632-4635651 | None:intergenic | 25.0% |
| ! | TTGAAGAAAATGTTCACTAA+AGG | - | chr3_4:4635690-4635709 | Msa0486600:CDS | 25.0% |
| ! | GAGAATAATTCGATACATAT+AGG | - | chr3_4:4635891-4635910 | Msa0486600:CDS | 25.0% |
| ! | GAATAATTCGATACATATAG+GGG | - | chr3_4:4635893-4635912 | Msa0486600:CDS | 25.0% |
| !!! | TGTTTTGGAAGTATAAGTTT+TGG | - | chr3_4:4636119-4636138 | Msa0486600:intron | 25.0% |
| ! | AAAAAAAAAACGTGTGAAAG+TGG | + | chr3_4:4636435-4636454 | None:intergenic | 25.0% |
| ! | ATTTATGTTAGATACAACCT+AGG | - | chr3_4:4636460-4636479 | Msa0486600:CDS | 25.0% |
| ! | AAAGAAAGAAGAGAATTAGA+GGG | + | chr3_4:4636555-4636574 | None:intergenic | 25.0% |
| ! | TTTCTTCAATATTCTCTTTG+GGG | - | chr3_4:4636583-4636602 | Msa0486600:intron | 25.0% |
| ! | AAAAAGTGATCAAAATTCGT+CGG | - | chr3_4:4636607-4636626 | Msa0486600:intron | 25.0% |
| !! | CAGATTTAAAATTATCCCAA+GGG | + | chr3_4:4636671-4636690 | None:intergenic | 25.0% |
| ! | AAAAGTAATCAATCTTCGTT+GGG | + | chr3_4:4636819-4636838 | None:intergenic | 25.0% |
| ! | AAAAAGTAATCAATCTTCGT+TGG | + | chr3_4:4636820-4636839 | None:intergenic | 25.0% |
| !!! | GATTACTTTTTACCCTAAAA+AGG | - | chr3_4:4636829-4636848 | Msa0486600:CDS | 25.0% |
| !!! | CTACTTATTTTCTCCTTTTT+AGG | + | chr3_4:4636845-4636864 | None:intergenic | 25.0% |
| !! | GTATATTCGACTTTTACTTT+GGG | - | chr3_4:4637290-4637309 | Msa0486600:intron | 25.0% |
| ! | CAGAATTCTTGAAATAAAAC+TGG | - | chr3_4:4637340-4637359 | Msa0486600:intron | 25.0% |
| !! | AACAATAACCTAGAGATTTT+TGG | - | chr3_4:4637640-4637659 | Msa0486600:intron | 25.0% |
| !! | TGATTCAGATAATTTGTAGA+AGG | - | chr3_4:4637858-4637877 | Msa0486600:intron | 25.0% |
| !!! | TAATTACTTTGTTTTTCAGG+TGG | - | chr3_4:4638230-4638249 | Msa0486600:intron | 25.0% |
| ! | ATCAAATCAAGAATCTTCTA+AGG | - | chr3_4:4638287-4638306 | Msa0486600:intron | 25.0% |
| ! | AAGAATCAAGTGTTTAATCA+AGG | - | chr3_4:4638311-4638330 | Msa0486600:intron | 25.0% |
| !! | AAGAATTTTCTCTTGAAACT+TGG | - | chr3_4:4638464-4638483 | Msa0486600:intron | 25.0% |
| ! | AATATTTCAACCAGTTAAAG+TGG | - | chr3_4:4638623-4638642 | Msa0486600:intron | 25.0% |
| ! | GAAACCATAGAAATTCTTAA+AGG | - | chr3_4:4638663-4638682 | Msa0486600:intron | 25.0% |
| ! | TATAATACATGTTGCAGAAT+TGG | + | chr3_4:4638811-4638830 | None:intergenic | 25.0% |
| !! | TCTTTTTGTTCTGTTTCAAA+AGG | + | chr3_4:4639034-4639053 | None:intergenic | 25.0% |
| !!! | TTTTGAAACAGAACAAAAAG+AGG | - | chr3_4:4639033-4639052 | Msa0486600:intron | 25.0% |
| !! | TTTGAAACAGAACAAAAAGA+GGG | - | chr3_4:4639034-4639053 | Msa0486600:intron | 25.0% |
| !!! | TTCAACATGTTATTTCTTCT+TGG | - | chr3_4:4639093-4639112 | Msa0486600:intron | 25.0% |
| ! | ATTATAATGACTAGCAATCT+TGG | - | chr3_4:4639626-4639645 | Msa0486600:intron | 25.0% |
| !! | TTGGTAACAACATTATTGAA+GGG | - | chr3_4:4639645-4639664 | Msa0486600:intron | 25.0% |
| ! | TAAAAAGAATTTGGTTATGG+AGG | - | chr3_4:4639700-4639719 | Msa0486600:intron | 25.0% |
| ! | AGAAGTTTGTGAAAAAATGA+TGG | - | chr3_4:4639832-4639851 | Msa0486600:intron | 25.0% |
| ! | TACATCTTTCATTGACATTT+AGG | - | chr3_4:4639864-4639883 | Msa0486600:intron | 25.0% |
| !! | TTTCATTGACATTTAGGTTT+AGG | - | chr3_4:4639870-4639889 | Msa0486600:intron | 25.0% |
| !! | TTCATTGACATTTAGGTTTA+GGG | - | chr3_4:4639871-4639890 | Msa0486600:intron | 25.0% |
| ! | GATGTTAAGGAAAGAAATAA+AGG | - | chr3_4:4639988-4640007 | Msa0486600:intron | 25.0% |
| ! | TTAAGGAAAGAAATAAAGGA+AGG | - | chr3_4:4639992-4640011 | Msa0486600:intron | 25.0% |
| !! | TCTTCCCTTTTAACATTTTT+TGG | + | chr3_4:4640073-4640092 | None:intergenic | 25.0% |
| GGAAAAATTCGTAAGTCTTA+TGG | - | chr3_4:4634866-4634885 | Msa0486600:CDS | 30.0% | |
| AATGAATTTACCTAGACTCT+TGG | + | chr3_4:4635026-4635045 | None:intergenic | 30.0% | |
| ! | GACCGTACCATATAATTTTA+AGG | - | chr3_4:4635199-4635218 | Msa0486600:CDS | 30.0% |
| CTCTTTACATTGGAAAACAA+TGG | + | chr3_4:4635622-4635641 | None:intergenic | 30.0% | |
| !! | AATTTCTTTGAAATGCGAAC+AGG | - | chr3_4:4635655-4635674 | Msa0486600:CDS | 30.0% |
| TTATTCTTTGAATCTTCTGC+AGG | + | chr3_4:4635723-4635742 | None:intergenic | 30.0% | |
| GATTCAAAGAATAAAATGGG+AGG | - | chr3_4:4635729-4635748 | Msa0486600:CDS | 30.0% | |
| AATTGCGAATTATGTGACTA+TGG | + | chr3_4:4635827-4635846 | None:intergenic | 30.0% | |
| !! | TGGACTTTTACTTTGGAAAT+GGG | + | chr3_4:4636296-4636315 | None:intergenic | 30.0% |
| !! | TTGGACTTTTACTTTGGAAA+TGG | + | chr3_4:4636297-4636316 | None:intergenic | 30.0% |
| GGTTGTATCTAACATAAATG+TGG | + | chr3_4:4636459-4636478 | None:intergenic | 30.0% | |
| GGGTATTTATAGGTAGAAAT+AGG | + | chr3_4:4636488-4636507 | None:intergenic | 30.0% | |
| !! | AAGTATGTGAGGGTATTTAT+AGG | + | chr3_4:4636498-4636517 | None:intergenic | 30.0% |
| CAAAGAAAGAAGAGAATTAG+AGG | + | chr3_4:4636556-4636575 | None:intergenic | 30.0% | |
| AAAAGTGATCAAAATTCGTC+GGG | - | chr3_4:4636608-4636627 | Msa0486600:intron | 30.0% | |
| ! | GCAGATTTAAAATTATCCCA+AGG | + | chr3_4:4636672-4636691 | None:intergenic | 30.0% |
| CAGATTTAAATTTAGCCCAA+GGG | - | chr3_4:4636752-4636771 | Msa0486600:CDS | 30.0% | |
| AAAATACATCATCAACCCTT+GGG | + | chr3_4:4636770-4636789 | None:intergenic | 30.0% | |
| ! | GGTATATTCGACTTTTACTT+TGG | - | chr3_4:4637289-4637308 | Msa0486600:intron | 30.0% |
| TGAAGAAGATGATGAAACTA+GGG | + | chr3_4:4637387-4637406 | None:intergenic | 30.0% | |
| ACGAATTTCTACACGAATTT+GGG | - | chr3_4:4637537-4637556 | Msa0486600:intron | 30.0% | |
| TTATGTTCCTGAAAAACTCA+AGG | - | chr3_4:4637967-4637986 | Msa0486600:intron | 30.0% | |
| TATGTTCCTGAAAAACTCAA+GGG | - | chr3_4:4637968-4637987 | Msa0486600:intron | 30.0% | |
| GTTCAATTATTGAGCAACAA+CGG | - | chr3_4:4638177-4638196 | Msa0486600:intron | 30.0% | |
| ! | GATACCGTGATTTAAGTTAA+AGG | + | chr3_4:4638203-4638222 | None:intergenic | 30.0% |
| ATCAAGGAAATTGAACTAAG+CGG | - | chr3_4:4638327-4638346 | Msa0486600:intron | 30.0% | |
| TTGAATTACACCTCTTTCAA+GGG | + | chr3_4:4638442-4638461 | None:intergenic | 30.0% | |
| GACTAATGTGTGAAATGTAA+AGG | + | chr3_4:4638491-4638510 | None:intergenic | 30.0% | |
| ATTTGTCTCAGCAATATGTA+AGG | - | chr3_4:4638754-4638773 | Msa0486600:intron | 30.0% | |
| ATCAAATCAATTGCCTTATC+AGG | + | chr3_4:4638891-4638910 | None:intergenic | 30.0% | |
| !! | ATTGATTTGATTGATGAAGC+TGG | - | chr3_4:4638900-4638919 | Msa0486600:intron | 30.0% |
| TGTCATGCAAAGGTAAAAAA+TGG | - | chr3_4:4638939-4638958 | Msa0486600:intron | 30.0% | |
| TTGAAACAGAACAAAAAGAG+GGG | - | chr3_4:4639035-4639054 | Msa0486600:intron | 30.0% | |
| !!! | ATATCACACTTTTTCACACT+AGG | + | chr3_4:4639074-4639093 | None:intergenic | 30.0% |
| !! | CATGTTATTTCTTCTTGGAT+TGG | - | chr3_4:4639098-4639117 | Msa0486600:intron | 30.0% |
| ! | ATAGTTTGTAGCTAATGCAT+TGG | + | chr3_4:4639333-4639352 | None:intergenic | 30.0% |
| ! | GCATTAGCTACAAACTATTT+TGG | - | chr3_4:4639335-4639354 | Msa0486600:intron | 30.0% |
| ATTAGATATGAGTGAGTACA+TGG | - | chr3_4:4639379-4639398 | Msa0486600:intron | 30.0% | |
| ATGCTACAAATTCTTGATGA+TGG | - | chr3_4:4639554-4639573 | Msa0486600:intron | 30.0% | |
| ! | CTTGGTAACAACATTATTGA+AGG | - | chr3_4:4639644-4639663 | Msa0486600:intron | 30.0% |
| AGAACTAACAAAATTGGAAG+TGG | - | chr3_4:4639784-4639803 | Msa0486600:intron | 30.0% | |
| AGGGATTATGTGATTCAAAA+TGG | - | chr3_4:4639890-4639909 | Msa0486600:intron | 30.0% | |
| AATGGATATAATCCTAGCTA+TGG | - | chr3_4:4639908-4639927 | Msa0486600:intron | 30.0% | |
| ! | AAGGACTATTGCAAGATTTT+TGG | - | chr3_4:4639946-4639965 | Msa0486600:intron | 30.0% |
| !! | AAGATTTTTGGAAGACACAT+TGG | - | chr3_4:4639958-4639977 | Msa0486600:intron | 30.0% |
| TGTTGATATCAATGTTGATG+AGG | - | chr3_4:4640027-4640046 | Msa0486600:intron | 30.0% | |
| ! | GTTGATATCAATGTTGATGA+GGG | - | chr3_4:4640028-4640047 | Msa0486600:intron | 30.0% |
| TGGAATTTCATGCAATTTGA+TGG | - | chr3_4:4640225-4640244 | Msa0486600:CDS | 30.0% | |
| GGAATTTCATGCAATTTGAT+GGG | - | chr3_4:4640226-4640245 | Msa0486600:CDS | 30.0% | |
| CAATTTGATGGGAAAAATGT+TGG | - | chr3_4:4640237-4640256 | Msa0486600:CDS | 30.0% | |
| AGTAATTATGGCTGCACAAA+AGG | - | chr3_4:4634763-4634782 | Msa0486600:three_prime_UTR | 35.0% | |
| AGCACAGAACATATACTACT+TGG | - | chr3_4:4634815-4634834 | Msa0486600:three_prime_UTR | 35.0% | |
| GCACAGAACATATACTACTT+GGG | - | chr3_4:4634816-4634835 | Msa0486600:three_prime_UTR | 35.0% | |
| CATATACTACTTGGGATTCT+TGG | - | chr3_4:4634824-4634843 | Msa0486600:three_prime_UTR | 35.0% | |
| ! | GGATTCTTGGTGATTCAAAT+GGG | - | chr3_4:4634837-4634856 | Msa0486600:exon | 35.0% |
| ATTATATGGTACGGTCAACT+TGG | + | chr3_4:4635195-4635214 | None:intergenic | 35.0% | |
| AAGGCATAACAAACTATGTG+AGG | + | chr3_4:4635450-4635469 | None:intergenic | 35.0% | |
| !! | CACATAGTTTGTTATGCCTT+AGG | - | chr3_4:4635450-4635469 | Msa0486600:CDS | 35.0% |
| ! | TGCCTTAGGTTATGATAATG+TGG | - | chr3_4:4635464-4635483 | Msa0486600:CDS | 35.0% |
| GTCCACATTATCATAACCTA+AGG | + | chr3_4:4635469-4635488 | None:intergenic | 35.0% | |
| ! | CAGTAACATTTTCTTCAACC+TGG | + | chr3_4:4635755-4635774 | None:intergenic | 35.0% |
| ! | CTATGTCATACGTTTTCTGT+AGG | - | chr3_4:4636196-4636215 | Msa0486600:CDS | 35.0% |
| TTCTGTAGGCAATTCTTCAT+TGG | - | chr3_4:4636210-4636229 | Msa0486600:CDS | 35.0% | |
| TCTGTAGGCAATTCTTCATT+GGG | - | chr3_4:4636211-4636230 | Msa0486600:CDS | 35.0% | |
| GGAAATGGGAAAAACTGTTT+GGG | + | chr3_4:4636282-4636301 | None:intergenic | 35.0% | |
| TGGAAATGGGAAAAACTGTT+TGG | + | chr3_4:4636283-4636302 | None:intergenic | 35.0% | |
| ! | GGCATTTTGGACTTTTACTT+TGG | + | chr3_4:4636303-4636322 | None:intergenic | 35.0% |
| ! | AGCACATGTTAAGTTGTGTA+GGG | + | chr3_4:4636326-4636345 | None:intergenic | 35.0% |
| ! | TAGCACATGTTAAGTTGTGT+AGG | + | chr3_4:4636327-4636346 | None:intergenic | 35.0% |
| ATAGGTAGAAATAGGAACCT+AGG | + | chr3_4:4636480-4636499 | None:intergenic | 35.0% | |
| ! | GGAATATAGGAAGTATGTGA+GGG | + | chr3_4:4636508-4636527 | None:intergenic | 35.0% |
| ! | AGGAATATAGGAAGTATGTG+AGG | + | chr3_4:4636509-4636528 | None:intergenic | 35.0% |
| GGAGATAATGTGAGGAATAT+AGG | + | chr3_4:4636521-4636540 | None:intergenic | 35.0% | |
| AAAGTGATCAAAATTCGTCG+GGG | - | chr3_4:4636609-4636628 | Msa0486600:intron | 35.0% | |
| ! | CAAGAAGTTCTTTTTACCCA+CGG | + | chr3_4:4636719-4636738 | None:intergenic | 35.0% |
| TGGGTAAAAAGAACTTCTTG+TGG | - | chr3_4:4636719-4636738 | Msa0486600:CDS | 35.0% | |
| CCTTGGGCTAAATTTAAATC+TGG | + | chr3_4:4636754-4636773 | None:intergenic | 35.0% | |
| CCAGATTTAAATTTAGCCCA+AGG | - | chr3_4:4636751-4636770 | Msa0486600:CDS | 35.0% | |
| GAAAATACATCATCAACCCT+TGG | + | chr3_4:4636771-4636790 | None:intergenic | 35.0% | |
| ! | ATGATGTATTTTCCCCAAGA+AGG | - | chr3_4:4636778-4636797 | Msa0486600:CDS | 35.0% |
| AATTCTGCTCTTTACCCAAA+TGG | + | chr3_4:4636265-4636284 | None:intergenic | 35.0% | |
| GTGAAGAAGATGATGAAACT+AGG | + | chr3_4:4637388-4637407 | None:intergenic | 35.0% | |
| AACATAGTTGTAGCATGAGA+GGG | + | chr3_4:4637466-4637485 | None:intergenic | 35.0% | |
| CAAATTCGTGTAGAAATTCG+TGG | + | chr3_4:4637538-4637557 | None:intergenic | 35.0% | |
| CACGAATTTCTACACGAATT+TGG | - | chr3_4:4637536-4637555 | Msa0486600:intron | 35.0% | |
| ! | GATTGGTTCCAAAAATCTCT+AGG | + | chr3_4:4637651-4637670 | None:intergenic | 35.0% |
| TGGAACCAATCTGACAAAAT+TGG | - | chr3_4:4637660-4637679 | Msa0486600:intron | 35.0% | |
| ! | TTGTGCCAATTTTGTCAGAT+TGG | + | chr3_4:4637668-4637687 | None:intergenic | 35.0% |
| ! | GGTAAACTTCATCCTTTTGT+GGG | - | chr3_4:4637812-4637831 | Msa0486600:intron | 35.0% |
| AAAAACAACCCTTGCCTTAT+AGG | - | chr3_4:4637884-4637903 | Msa0486600:intron | 35.0% | |
| GGGAAAACATCAATCATACA+TGG | - | chr3_4:4637920-4637939 | Msa0486600:intron | 35.0% | |
| ATGTTCCTGAAAAACTCAAG+GGG | - | chr3_4:4637969-4637988 | Msa0486600:intron | 35.0% | |
| ! | TTTTTCCCCTTGAGTTTTTC+AGG | + | chr3_4:4637977-4637996 | None:intergenic | 35.0% |
| TGAAAAACTCAAGGGGAAAA+AGG | - | chr3_4:4637976-4637995 | Msa0486600:intron | 35.0% | |
| ! | AACCTATTTGTTACTTGTGC+TGG | - | chr3_4:4638019-4638038 | Msa0486600:intron | 35.0% |
| TACCAGCACAAGTAACAAAT+AGG | + | chr3_4:4638024-4638043 | None:intergenic | 35.0% | |
| AATCTACGTTAGTTACAAGC+TGG | - | chr3_4:4638063-4638082 | Msa0486600:intron | 35.0% | |
| AATCTACGTTAGTTACAAGC+TGG | - | chr3_4:4638063-4638082 | Msa0486600:intron | 35.0% | |
| ! | ACGGCCTTTAACTTAAATCA+CGG | - | chr3_4:4638196-4638215 | Msa0486600:intron | 35.0% |
| CAAAATGTATGCGAAACTGT+CGG | + | chr3_4:4638412-4638431 | None:intergenic | 35.0% | |
| CTTGAATTACACCTCTTTCA+AGG | + | chr3_4:4638443-4638462 | None:intergenic | 35.0% | |
| TCTATGGTTTCTTCAACAGA+TGG | + | chr3_4:4638654-4638673 | None:intergenic | 35.0% | |
| ! | GAGGCCTTTAAGAATTTCTA+TGG | + | chr3_4:4638670-4638689 | None:intergenic | 35.0% |
| TGTTCAACTTTGTCATGCAA+AGG | - | chr3_4:4638929-4638948 | Msa0486600:intron | 35.0% | |
| GAAGCATGTCTTCTAAATTG+AGG | + | chr3_4:4639166-4639185 | None:intergenic | 35.0% | |
| GTGAACATGAAACTTGCAAT+AGG | + | chr3_4:4639278-4639297 | None:intergenic | 35.0% | |
| ATTGCAAGTTTCATGTTCAC+CGG | - | chr3_4:4639278-4639297 | Msa0486600:intron | 35.0% | |
| !! | AGCTAATGCATTGGCTAATT+CGG | + | chr3_4:4639324-4639343 | None:intergenic | 35.0% |
| GTCAATTAACCGAAGCTATT+CGG | - | chr3_4:4639465-4639484 | Msa0486600:intron | 35.0% | |
| ! | TCAAGTCGATTCAAAAACTC+TGG | + | chr3_4:4639746-4639765 | None:intergenic | 35.0% |
| CTTGCAATAGTCCTTCTTAA+TGG | + | chr3_4:4639941-4639960 | None:intergenic | 35.0% | |
| ! | CATTGGCTGAAAAGATGTTA+AGG | - | chr3_4:4639975-4639994 | Msa0486600:intron | 35.0% |
| TCTGTTGATCATTCAGATGT+TGG | - | chr3_4:4640106-4640125 | Msa0486600:CDS | 35.0% | |
| !! | GTTGGTGATTATTTAGCTGA+TGG | - | chr3_4:4640124-4640143 | Msa0486600:CDS | 35.0% |
| TCTGTTGATCATTCAGATGT+TGG | - | chr3_4:4640106-4640125 | Msa0486600:CDS | 35.0% | |
| !! | GTTGGTGATTATTTAGCTGA+TGG | - | chr3_4:4640124-4640143 | Msa0486600:CDS | 35.0% |
| TGATGGAGAGAGAAAAGATA+TGG | - | chr3_4:4640141-4640160 | Msa0486600:CDS | 35.0% | |
| ACAAAAGGAAGCAAGGTTTG+TGG | - | chr3_4:4634778-4634797 | Msa0486600:three_prime_UTR | 40.0% | |
| CAAAAGGAAGCAAGGTTTGT+GGG | - | chr3_4:4634779-4634798 | Msa0486600:three_prime_UTR | 40.0% | |
| ! | GGGATTCTTGGTGATTCAAA+TGG | - | chr3_4:4634836-4634855 | Msa0486600:exon | 40.0% |
| !! | GACACAATGCACCTACTTTT+GGG | - | chr3_4:4635486-4635505 | Msa0486600:CDS | 40.0% |
| !! | ACACAATGCACCTACTTTTG+GGG | - | chr3_4:4635487-4635506 | Msa0486600:CDS | 40.0% |
| !!! | TACTTTTGGGGTTGCTTCAA+GGG | - | chr3_4:4635499-4635518 | Msa0486600:CDS | 40.0% |
| AAAGAATAAAATGGGAGGCC+AGG | - | chr3_4:4635734-4635753 | Msa0486600:CDS | 40.0% | |
| ! | CATATAGGGGTATAGAGCTT+CGG | - | chr3_4:4635906-4635925 | Msa0486600:CDS | 40.0% |
| ! | CACATGTTAAGTTGTGTAGG+GGG | + | chr3_4:4636324-4636343 | None:intergenic | 40.0% |
| ! | GCACATGTTAAGTTGTGTAG+GGG | + | chr3_4:4636325-4636344 | None:intergenic | 40.0% |
| AAGTCACGCTCTTAATACAC+TGG | + | chr3_4:4636397-4636416 | None:intergenic | 40.0% | |
| AAAATAGTGAGTAGCCGACT+TGG | - | chr3_4:4636633-4636652 | Msa0486600:intron | 40.0% | |
| ! | AAATAGTGAGTAGCCGACTT+GGG | - | chr3_4:4636634-4636653 | Msa0486600:intron | 40.0% |
| AAATAGTGAGCAGCCTTCTT+GGG | + | chr3_4:4636794-4636813 | None:intergenic | 40.0% | |
| AAAATAGTGAGCAGCCTTCT+TGG | + | chr3_4:4636795-4636814 | None:intergenic | 40.0% | |
| AACGTGAGTTAACATGCGTA+AGG | - | chr3_4:4637267-4637286 | Msa0486600:intron | 40.0% | |
| ACGTGAGTTAACATGCGTAA+GGG | - | chr3_4:4637268-4637287 | Msa0486600:intron | 40.0% | |
| CTTCTTCACTAACGTGAAAG+CGG | - | chr3_4:4637399-4637418 | Msa0486600:intron | 40.0% | |
| GAACATAGTTGTAGCATGAG+AGG | + | chr3_4:4637467-4637486 | None:intergenic | 40.0% | |
| CAACTATGTTCCTCAACTCA+CGG | - | chr3_4:4637476-4637495 | Msa0486600:intron | 40.0% | |
| CTCCCACTTACGAATTTATG+CGG | - | chr3_4:4637501-4637520 | Msa0486600:intron | 40.0% | |
| TCCCACTTACGAATTTATGC+GGG | - | chr3_4:4637502-4637521 | Msa0486600:intron | 40.0% | |
| ACCCGCATAAATTCGTAAGT+GGG | + | chr3_4:4637506-4637525 | None:intergenic | 40.0% | |
| TACCCGCATAAATTCGTAAG+TGG | + | chr3_4:4637507-4637526 | None:intergenic | 40.0% | |
| GGGAGAATCAATATGCGAAT+CGG | - | chr3_4:4637557-4637576 | Msa0486600:intron | 40.0% | |
| GCATAGTTACAGAATTCGCT+GGG | + | chr3_4:4637616-4637635 | None:intergenic | 40.0% | |
| AGCATAGTTACAGAATTCGC+TGG | + | chr3_4:4637617-4637636 | None:intergenic | 40.0% | |
| TCTGACAAAATTGGCACAAG+AGG | - | chr3_4:4637669-4637688 | Msa0486600:intron | 40.0% | |
| CAAAATTGGCACAAGAGGTA+TGG | - | chr3_4:4637674-4637693 | Msa0486600:intron | 40.0% | |
| ! | GGGTAAACTTCATCCTTTTG+TGG | - | chr3_4:4637811-4637830 | Msa0486600:intron | 40.0% |
| ! | AACTTCATCCTTTTGTGGGA+AGG | - | chr3_4:4637816-4637835 | Msa0486600:intron | 40.0% |
| ! | ACTTCATCCTTTTGTGGGAA+GGG | - | chr3_4:4637817-4637836 | Msa0486600:intron | 40.0% |
| TTATAGGAGAACCTGGAGTA+GGG | - | chr3_4:4637900-4637919 | Msa0486600:intron | 40.0% | |
| ! | ATTGATGTTTTCCCTACTCC+AGG | + | chr3_4:4637914-4637933 | None:intergenic | 40.0% |
| ! | CTTGCTCAGAGAATTTTGAG+TGG | - | chr3_4:4637944-4637963 | Msa0486600:intron | 40.0% |
| TGCTGGTATTGTGAAATTCG+TGG | - | chr3_4:4638036-4638055 | Msa0486600:intron | 40.0% | |
| AGCTGGTATTGTGAAATTCG+TGG | - | chr3_4:4638080-4638099 | Msa0486600:intron | 40.0% | |
| AGCTGGTATTGTGAAATTCG+TGG | - | chr3_4:4638080-4638099 | Msa0486600:intron | 40.0% | |
| !!! | TGTTTTTCAGGTGGTTGCAT+TGG | - | chr3_4:4638239-4638258 | Msa0486600:intron | 40.0% |
| ATTCGATGCAGAAACATCAG+AGG | - | chr3_4:4638386-4638405 | Msa0486600:intron | 40.0% | |
| TTGAAACATGCCCTTGAAAG+AGG | - | chr3_4:4638429-4638448 | Msa0486600:intron | 40.0% | |
| GATGGTTCAACCACTTTAAC+TGG | + | chr3_4:4638636-4638655 | None:intergenic | 40.0% | |
| CGATCGTTTCTTACCTGATA+AGG | - | chr3_4:4638875-4638894 | Msa0486600:intron | 40.0% | |
| AGTGATGTACCAAAGGAAGA+AGG | - | chr3_4:4639131-4639150 | Msa0486600:intron | 40.0% | |
| GCATGTCTTCTAAATTGAGG+AGG | + | chr3_4:4639163-4639182 | None:intergenic | 40.0% | |
| ATGCTTCACAAACACGTCAT+CGG | - | chr3_4:4639179-4639198 | Msa0486600:intron | 40.0% | |
| CACAGTGCAGCTAGATTAAT+TGG | - | chr3_4:4639407-4639426 | Msa0486600:intron | 40.0% | |
| CGAATTTCTCCGAATAGCTT+CGG | + | chr3_4:4639477-4639496 | None:intergenic | 40.0% | |
| ! | ATGGTGCTAGACCATTAAGA+AGG | - | chr3_4:4639927-4639946 | Msa0486600:intron | 40.0% |
| GGAGAGAGAAAAGATATGGT+TGG | - | chr3_4:4640205-4640224 | Msa0486600:CDS | 40.0% | |
| GGAAAAATGTTGGACATGCT+TGG | - | chr3_4:4640247-4640266 | Msa0486600:CDS | 40.0% | |
| !! | GGTGATTCAAATGGGTTGAC+TGG | - | chr3_4:4634845-4634864 | Msa0486600:exon | 45.0% |
| TAGGGAGCAAGTGATGAAGT+TGG | - | chr3_4:4634907-4634926 | Msa0486600:CDS | 45.0% | |
| ! | GAGCAAGTGATGAAGTTGGT+TGG | - | chr3_4:4634911-4634930 | Msa0486600:CDS | 45.0% |
| !! | GTGATGAAGTTGGTTGGTAG+AGG | - | chr3_4:4634917-4634936 | Msa0486600:CDS | 45.0% |
| !! | ATGAAGTTGGTTGGTAGAGG+TGG | - | chr3_4:4634920-4634939 | Msa0486600:CDS | 45.0% |
| CTCAAACATGCCAAGAGTCT+AGG | - | chr3_4:4635013-4635032 | Msa0486600:CDS | 45.0% | |
| ! | GGACACAATGCACCTACTTT+TGG | - | chr3_4:4635485-4635504 | Msa0486600:CDS | 45.0% |
| CTTGAAGCAACCCCAAAAGT+AGG | + | chr3_4:4635500-4635519 | None:intergenic | 45.0% | |
| !!! | CTACTTTTGGGGTTGCTTCA+AGG | - | chr3_4:4635498-4635517 | Msa0486600:CDS | 45.0% |
| !! | CTATGGTTCTGAGTCACAAC+AGG | + | chr3_4:4635810-4635829 | None:intergenic | 45.0% |
| !!! | AAGTTGTGTAGGGGGCATTT+TGG | + | chr3_4:4636316-4636335 | None:intergenic | 45.0% |
| GAGAATTAGAGGGAGAGAGT+GGG | + | chr3_4:4636545-4636564 | None:intergenic | 45.0% | |
| AGAGAATTAGAGGGAGAGAG+TGG | + | chr3_4:4636546-4636565 | None:intergenic | 45.0% | |
| !! | AATAGTGAGTAGCCGACTTG+GGG | - | chr3_4:4636635-4636654 | Msa0486600:intron | 45.0% |
| ! | ACCGCAGAAACTTTTTACCG+TGG | - | chr3_4:4636699-4636718 | Msa0486600:CDS | 45.0% |
| CCCACGGTAAAAAGTTTCTG+CGG | + | chr3_4:4636703-4636722 | None:intergenic | 45.0% | |
| ! | CCGCAGAAACTTTTTACCGT+GGG | - | chr3_4:4636700-4636719 | Msa0486600:CDS | 45.0% |
| AATAGTGAGCAGCCTTCTTG+GGG | + | chr3_4:4636793-4636812 | None:intergenic | 45.0% | |
| AACCAGCGCAAGTTAACTCA+CGG | - | chr3_4:4637244-4637263 | Msa0486600:intron | 45.0% | |
| TGGGAGTGAGCAAAACCATT+TGG | - | chr3_4:4637309-4637328 | Msa0486600:intron | 45.0% | |
| GGGAGTGAGCAAAACCATTT+GGG | - | chr3_4:4637310-4637329 | Msa0486600:intron | 45.0% | |
| ! | AATTGGCACAAGAGGTATGG+CGG | - | chr3_4:4637677-4637696 | Msa0486600:intron | 45.0% |
| CAGGTTCTCCTATAAGGCAA+GGG | + | chr3_4:4637895-4637914 | None:intergenic | 45.0% | |
| CTACTCCAGGTTCTCCTATA+AGG | + | chr3_4:4637901-4637920 | None:intergenic | 45.0% | |
| CTTATAGGAGAACCTGGAGT+AGG | - | chr3_4:4637899-4637918 | Msa0486600:intron | 45.0% | |
| GAATGAGCACAGAATGCACA+TGG | - | chr3_4:4638578-4638597 | Msa0486600:intron | 45.0% | |
| GAAATTCTTAAAGGCCTCCG+CGG | - | chr3_4:4638672-4638691 | Msa0486600:intron | 45.0% | |
| AATGCGACTCATATGTTCCG+CGG | + | chr3_4:4638692-4638711 | None:intergenic | 45.0% | |
| ACCAGTCAGTGATGTACCAA+AGG | - | chr3_4:4639124-4639143 | Msa0486600:intron | 45.0% | |
| TCCTTTGGTACATCACTGAC+TGG | + | chr3_4:4639128-4639147 | None:intergenic | 45.0% | |
| ! | AGGTTTTCGCCTTCTTCCTT+TGG | + | chr3_4:4639143-4639162 | None:intergenic | 45.0% |
| TCGGTCTAAGAAACTGCAGA+AGG | - | chr3_4:4639252-4639271 | Msa0486600:intron | 45.0% | |
| ! | AGATTAATTGGAGCACCTCC+TGG | - | chr3_4:4639419-4639438 | Msa0486600:intron | 45.0% |
| !! | GATGATGGAAGACTCACAGA+TGG | - | chr3_4:4639569-4639588 | Msa0486600:intron | 45.0% |
| GGAAGACTCACAGATGGAAA+AGG | - | chr3_4:4639575-4639594 | Msa0486600:intron | 45.0% | |
| AATGGTCTAGCACCATAGCT+AGG | + | chr3_4:4639923-4639942 | None:intergenic | 45.0% | |
| !!! | AATTTTTAAAAGAATATATA+TGG | - | chr3_4:4635252-4635271 | Msa0486600:CDS | 5.0% |
| TGGCTGCACAAAAGGAAGCA+AGG | - | chr3_4:4634771-4634790 | Msa0486600:three_prime_UTR | 50.0% | |
| !! | AAGTTGGTTGGTAGAGGTGG+TGG | - | chr3_4:4634923-4634942 | Msa0486600:CDS | 50.0% |
| GGGTTGCTTCAAGGGTCTAA+TGG | - | chr3_4:4635507-4635526 | Msa0486600:CDS | 50.0% | |
| GCTTCAAGGGTCTAATGGTG+TGG | - | chr3_4:4635512-4635531 | Msa0486600:CDS | 50.0% | |
| TCGCAATTCGCTCTGATACG+CGG | - | chr3_4:4635839-4635858 | Msa0486600:CDS | 50.0% | |
| ATTCGCTCTGATACGCGGTA+CGG | - | chr3_4:4635844-4635863 | Msa0486600:CDS | 50.0% | |
| GAGTGGGAGGAGATAATGTG+AGG | + | chr3_4:4636529-4636548 | None:intergenic | 50.0% | |
| AATTAGAGGGAGAGAGTGGG+AGG | + | chr3_4:4636542-4636561 | None:intergenic | 50.0% | |
| !! | TTCCGTGAGTTAACTTGCGC+TGG | + | chr3_4:4637249-4637268 | None:intergenic | 50.0% |
| GGGTTAAGAGTCTCTCTTGC+TGG | + | chr3_4:4637367-4637386 | None:intergenic | 50.0% | |
| ! | GAGAAGAGTACGAGCAAGAG+TGG | + | chr3_4:4637444-4637463 | None:intergenic | 50.0% |
| CGAACCAATTCGTGGTTCAC+CGG | - | chr3_4:4637586-4637605 | Msa0486600:intron | 50.0% | |
| TTGACCGGTGAACCACGAAT+TGG | + | chr3_4:4637593-4637612 | None:intergenic | 50.0% | |
| ! | ACAGAATTCGCTGGGTTGAC+CGG | + | chr3_4:4637608-4637627 | None:intergenic | 50.0% |
| ! | CACAAGAGGTATGGCGGTAA+TGG | - | chr3_4:4637683-4637702 | Msa0486600:intron | 50.0% |
| TGCTCTTCCCTTCCCACAAA+AGG | + | chr3_4:4637827-4637846 | None:intergenic | 50.0% | |
| ! | TTTTGTGGGAAGGGAAGAGC+AGG | - | chr3_4:4637826-4637845 | Msa0486600:intron | 50.0% |
| CCAGGTTCTCCTATAAGGCA+AGG | + | chr3_4:4637896-4637915 | None:intergenic | 50.0% | |
| CCTTGCCTTATAGGAGAACC+TGG | - | chr3_4:4637893-4637912 | Msa0486600:intron | 50.0% | |
| TTCATGTTCACCGGTCCTTC+AGG | - | chr3_4:4639287-4639306 | Msa0486600:intron | 50.0% | |
| ! | TTTTCCTACGCCTGAAGGAC+CGG | + | chr3_4:4639300-4639319 | None:intergenic | 50.0% |
| ! | TCGGTTTTTCCTACGCCTGA+AGG | + | chr3_4:4639305-4639324 | None:intergenic | 50.0% |
| ! | GGTAGAGGTGGTGGTTGTAG+TGG | - | chr3_4:4634932-4634951 | Msa0486600:CDS | 55.0% |
| TTCGCTCTGATACGCGGTAC+GGG | - | chr3_4:4635845-4635864 | Msa0486600:CDS | 55.0% | |
| TCTGATACGCGGTACGGGTA+CGG | - | chr3_4:4635850-4635869 | Msa0486600:CDS | 55.0% | |
| ! | CTTCGGTACGCTTCGATTCG+TGG | - | chr3_4:4635923-4635942 | Msa0486600:CDS | 55.0% |
| GGTCGATCACTTCCCCAAGT+CGG | + | chr3_4:4636650-4636669 | None:intergenic | 55.0% | |
| TTGGGGAAGTGATCGACCCT+TGG | - | chr3_4:4636652-4636671 | Msa0486600:intron | 55.0% | |
| TGGGGAAGTGATCGACCCTT+GGG | - | chr3_4:4636653-4636672 | Msa0486600:intron | 55.0% | |
| AGTGGGAGAACCGTGAGTTG+AGG | + | chr3_4:4637489-4637508 | None:intergenic | 55.0% | |
| GGTACGTGCGAACCAATTCG+TGG | - | chr3_4:4637578-4637597 | Msa0486600:intron | 55.0% | |
| TCAGGTGGTTGCATTGGACG+TGG | - | chr3_4:4638245-4638264 | Msa0486600:intron | 55.0% | |
| ACGAATCGCTCGGCAGATTG+TGG | + | chr3_4:4639222-4639241 | None:intergenic | 55.0% | |
| CTCTAGCACGACGAATCGCT+CGG | + | chr3_4:4639232-4639251 | None:intergenic | 55.0% | |
| GCGATTCGTCGTGCTAGAGT+CGG | - | chr3_4:4639233-4639252 | Msa0486600:intron | 55.0% | |
| CGGTTAATTGACCGCCGTCA+CGG | + | chr3_4:4639457-4639476 | None:intergenic | 55.0% | |
| CTGATACGCGGTACGGGTAC+GGG | - | chr3_4:4635851-4635870 | Msa0486600:CDS | 60.0% | |
| GCGACTCATATGTTCCGCGG+AGG | + | chr3_4:4638689-4638708 | None:intergenic | 60.0% | |
| TTCACCGGTCCTTCAGGCGT+AGG | - | chr3_4:4639293-4639312 | Msa0486600:intron | 60.0% | |
| TCACGGAAACCGGCATAGCC+AGG | + | chr3_4:4639440-4639459 | None:intergenic | 60.0% | |
| !! | GGCTATGCCGGTTTCCGTGA+CGG | - | chr3_4:4639440-4639459 | Msa0486600:intron | 60.0% |
| !! | TATGCCGGTTTCCGTGACGG+CGG | - | chr3_4:4639443-4639462 | Msa0486600:intron | 60.0% |
| TTGACCGCCGTCACGGAAAC+CGG | + | chr3_4:4639450-4639469 | None:intergenic | 60.0% | |
| ! | GGAGCACCTCCTGGCTATGC+CGG | - | chr3_4:4639428-4639447 | Msa0486600:intron | 65.0% |
| CGGAAACCGGCATAGCCAGG+AGG | + | chr3_4:4639437-4639456 | None:intergenic | 65.0% | |
| GCGGTACGGGTACGGGTTCG+TGG | - | chr3_4:4635858-4635877 | Msa0486600:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 4634731 | 4640408 | 4634731 | ID=Msa0486600;Name=Msa0486600 |
| chr3_4 | mRNA | 4634731 | 4640408 | 4634731 | ID=Msa0486600-mRNA-1;Parent=Msa0486600;Name=Msa0486600-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.6|0.66|1|1|1|6|120|744 |
| chr3_4 | exon | 4634731 | 4636095 | 4634731 | ID=Msa0486600-mRNA-1:exon:1768;Parent=Msa0486600-mRNA-1 |
| chr3_4 | exon | 4636189 | 4636264 | 4636189 | ID=Msa0486600-mRNA-1:exon:1767;Parent=Msa0486600-mRNA-1 |
| chr3_4 | exon | 4636364 | 4636581 | 4636364 | ID=Msa0486600-mRNA-1:exon:1766;Parent=Msa0486600-mRNA-1 |
| chr3_4 | exon | 4636678 | 4636890 | 4636678 | ID=Msa0486600-mRNA-1:exon:1765;Parent=Msa0486600-mRNA-1 |
| chr3_4 | exon | 4637055 | 4637233 | 4637055 | ID=Msa0486600-mRNA-1:exon:1764;Parent=Msa0486600-mRNA-1 |
| chr3_4 | exon | 4640105 | 4640408 | 4640105 | ID=Msa0486600-mRNA-1:exon:1763;Parent=Msa0486600-mRNA-1 |
| chr3_4 | CDS | 4640105 | 4640408 | 4640105 | ID=Msa0486600-mRNA-1:cds;Parent=Msa0486600-mRNA-1 |
| chr3_4 | CDS | 4637055 | 4637233 | 4637055 | ID=Msa0486600-mRNA-1:cds;Parent=Msa0486600-mRNA-1 |
| chr3_4 | CDS | 4636678 | 4636890 | 4636678 | ID=Msa0486600-mRNA-1:cds;Parent=Msa0486600-mRNA-1 |
| chr3_4 | CDS | 4636364 | 4636581 | 4636364 | ID=Msa0486600-mRNA-1:cds;Parent=Msa0486600-mRNA-1 |
| chr3_4 | CDS | 4636189 | 4636264 | 4636189 | ID=Msa0486600-mRNA-1:cds;Parent=Msa0486600-mRNA-1 |
| chr3_4 | CDS | 4634851 | 4636095 | 4634851 | ID=Msa0486600-mRNA-1:cds;Parent=Msa0486600-mRNA-1 |
| chr3_4 | three_prime_UTR | 4634731 | 4634850 | 4634731 | ID=Msa0486600-mRNA-1:three_prime_utr;Parent=Msa0486600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
