AlfalfaGEDB | Msa0486590

M. sativa cultivar zhongmu-4 / Msa0486590

KEGG: K03696
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02861.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486590	KEH34100.1	86.232	828	44	4	1	776	1	810	0.0	1424

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486590	sp\|P31542\|CLPAB_SOLLC	51.211	826	296	13	1	728	91	907	0.0	781

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486590	A0A072V7F1	86.232	828	44	4	1	776	1	810	0.0	1424

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0258760	Msa0486590	0.834147	3.545239e-56	-8.615850e-47
Msa0323080	Msa0486590	0.812404	4.313190e-51	-8.615850e-47
Msa0344830	Msa0486590	0.805918	1.058664e-49	-8.615850e-47
Msa0363890	Msa0486590	0.883041	6.274139e-71	-8.615850e-47
Msa0411510	Msa0486590	0.832859	7.430071e-56	-8.615850e-47
Msa0455670	Msa0486590	0.900744	5.391543e-78	-8.615850e-47
Msa0486590	Msa0486600	0.916165	2.471844e-85	-8.615850e-47
Msa0486590	Msa0562440	0.824371	8.368017e-54	-8.615850e-47
Msa0486590	Msa0662650	0.800606	1.331915e-48	-8.615850e-47
Msa0486590	Msa0777230	0.811594	6.476800e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486590	MtrunA17_Chr3g0102771	84.852	845	50	5	1	776	1	836	0.0	1420
Msa0486590	MtrunA17_Chr8g0385811	50.726	826	300	12	1	728	95	911	0.0	779
Msa0486590	MtrunA17_Chr3g0134631	50.363	826	303	12	1	728	96	912	0.0	773
Msa0486590	MtrunA17_Chr3g0131711	48.263	835	325	12	1	737	91	916	0.0	742
Msa0486590	MtrunA17_Chr6g0454071	48.910	321	161	1	402	719	617	937	9.23e-104	341
Msa0486590	MtrunA17_Chr6g0454071	34.236	406	235	7	3	382	82	481	1.01e-60	221
Msa0486590	MtrunA17_Chr3g0131351	47.507	341	168	4	398	729	616	954	9.36e-104	341
Msa0486590	MtrunA17_Chr3g0131351	44.856	243	128	1	173	409	329	571	1.73e-52	197
Msa0486590	MtrunA17_Chr7g0218421	48.632	329	158	3	398	719	617	941	2.47e-103	340
Msa0486590	MtrunA17_Chr7g0218421	34.568	405	235	6	3	382	86	485	1.95e-62	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486590	AT5G50920.1	50.483	828	298	12	1	728	94	909	0.0	780
Msa0486590	AT3G48870.2	49.516	826	310	10	1	728	83	899	0.0	771
Msa0486590	AT3G48870.1	49.516	826	310	10	1	728	114	930	0.0	771
Msa0486590	AT3G48870.4	49.516	826	310	10	1	728	114	930	0.0	771
Msa0486590	AT3G48870.3	49.516	826	310	10	1	728	114	930	0.0	771
Msa0486590	AT5G51070.1	37.327	868	393	16	1	731	79	932	1.63e-178	536
Msa0486590	AT5G15450.1	48.287	321	164	1	401	719	614	934	3.94e-103	340
Msa0486590	AT5G15450.1	34.375	416	221	7	3	382	80	479	3.06e-62	226
Msa0486590	AT2G25140.1	48.615	325	163	2	398	718	616	940	4.08e-102	337
Msa0486590	AT2G25140.1	34.928	418	213	9	4	382	87	484	5.26e-62	225

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Find 120 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAATCAAGTGTTTAATCA+AGG	0.508788	3_4:-4626837	Msa0486590:CDS
AAGTTGGTTGGTAGAGGTGG+TGG	0.480856	3_4:-4628547	Msa0486590:CDS
AATATTTCAACCAGTTAAAG+TGG	0.449508	3_4:-4626524	Msa0486590:CDS
AATGCGACTCATATGTTCCG+CGG	0.684640	3_4:+4626458	None:intergenic
AATGGATATAACCCTAGCTA+TGG	0.554078	3_4:-4625230	Msa0486590:CDS
AATGGTCTTGCACCATAGCT+AGG	0.444974	3_4:+4625218	None:intergenic
ACAAAAGGAAGCTAGGTTTG+TGG	0.588969	3_4:-4628692	Msa0486590:CDS
ACCAGTCAGTGATGTATCAA+AGG	0.553971	3_4:-4626014	Msa0486590:CDS
AGAACTAACAAAATTGGAAG+TGG	0.523751	3_4:-4625354	Msa0486590:CDS
AGATTAATTGGAGCACCTCC+TGG	0.491051	3_4:-4625719	Msa0486590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCAAGTGATTCAAAATCA+AGG	-	chr3_4:4625817-4625836	Msa0486590:CDS	30.0%
ATTGAAGAAAATGTTCACCA+TGG	-	chr3_4:4625970-4625989	Msa0486590:CDS	30.0%
CTTCAATCTTGTCTTCAATT+TGG	+	chr3_4:4625957-4625976	None:intergenic	30.0%
ATTGAAGAAAATGTTCACCA+TGG	-	chr3_4:4625970-4625989	Msa0486590:CDS	30.0%
TTGTGCTAATTTAGTCAGAT+TGG	+	chr3_4:4626202-4626221	None:intergenic	30.0%
ATATGTTCCTGAAAAACTCA+AGG	-	chr3_4:4626589-4626608	Msa0486590:CDS	30.0%
TATGTTCCTGAAAAACTCAA+GGG	-	chr3_4:4626590-4626609	Msa0486590:CDS	30.0%
ATCAAGGAAATTGAACTAAG+CGG	-	chr3_4:4626862-4626881	Msa0486590:CDS	30.0%
TTGAATTACACCTCTTTCAA+GGG	+	chr3_4:4626977-4626996	None:intergenic	30.0%
GACTAATGTGTGAAATGTAA+AGG	+	chr3_4:4627026-4627045	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	4624944	4628761	4624944	ID=Msa0486590;Name=Msa0486590
chr3_4	mRNA	4624944	4628761	4624944	ID=Msa0486590-mRNA-1;Parent=Msa0486590;Name=Msa0486590-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0\|0\|0\|1\|1\|1\|7\|0\|776
chr3_4	exon	4628458	4628761	4628458	ID=Msa0486590-mRNA-1:exon:1775;Parent=Msa0486590-mRNA-1
chr3_4	exon	4627481	4627695	4627481	ID=Msa0486590-mRNA-1:exon:1774;Parent=Msa0486590-mRNA-1
chr3_4	exon	4627086	4627217	4627086	ID=Msa0486590-mRNA-1:exon:1773;Parent=Msa0486590-mRNA-1
chr3_4	exon	4626709	4626921	4626709	ID=Msa0486590-mRNA-1:exon:1772;Parent=Msa0486590-mRNA-1
chr3_4	exon	4626394	4626611	4626394	ID=Msa0486590-mRNA-1:exon:1771;Parent=Msa0486590-mRNA-1
chr3_4	exon	4626210	4626285	4626210	ID=Msa0486590-mRNA-1:exon:1770;Parent=Msa0486590-mRNA-1
chr3_4	exon	4624944	4626116	4624944	ID=Msa0486590-mRNA-1:exon:1769;Parent=Msa0486590-mRNA-1
chr3_4	CDS	4628458	4628761	4628458	ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1
chr3_4	CDS	4627481	4627695	4627481	ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1
chr3_4	CDS	4627086	4627217	4627086	ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1
chr3_4	CDS	4626709	4626921	4626709	ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1
chr3_4	CDS	4626394	4626611	4626394	ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1
chr3_4	CDS	4626210	4626285	4626210	ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1
chr3_4	CDS	4624944	4626116	4624944	ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1

Gene Sequence

>Msa0486590

ATGTTGGAGCATTTAACAGAATGTGCAAAGAAAGTAATTATGGCTGCACAAAAGGAAGCTAGGTTTGTGGGACATAAATACATTAGCACAGAACATATACTACTTGGGATTCTTGGTGATTCAAATGGGTTGGCTGGAAAAATTCTTAATTCTTATGGAATTGATTTTAATGTTAGTAGGGAGCAAGTGATGAAGTTGGTTGGTAGAGGTGGTGGTTGTAGTGGTTTGTCTTGTAAAGATATAAGGTTCACTTTTGAAGCTAAGAATGTTCTTGATTTCTCACTCAAACATGCAAAATCTCTAGGTTCTAAGAATAAAATGAAATGCCAAATTGAAGACAAGATTGAAGAAAATGTTCACCATGGTGATGTTACTGCAGAAGGTTCTAAGTATAATCAGAATATATTTCATGCTGTGTCTCAAAACAGTAACCTAGGTGCTAAGAAAGATGACAATGTGAATAAACAAAAGTCTGCTCTTGAGATTTTTGGAACCAATCTGACTAAATTAGCACAAGAGATAATTTGTAGAAGGATGAAAAACAACCCTTGCCTTATAGGAGAACCTGGAGTAGGGAAAACATCAATCATACAAGGTCTTGCTCAGAGAATTTTGAGTGGATATGTTCCTGAAAAACTCAAGGGGAAAAAGGTGGTTGCATTGGACGTGGCTGATTTTTTATATGTAATATCAAATCAAGAATTTTCAGAGGAAAGAATCAAGTGTTTAATCAAGGAAATTGAACTAAGCGGTAATGTGATACTTTTTGTGAAAGAAGTTCATCACATATTCAATGCAGCAACATCAGGGGCCCGCAGTTTCGCATACATTTTGAAACATGCCCTTGAAAGAGGTGTAATTCAATGTATATTTGCTACAACAGTGAATGAGCACAGAATGCACATGGAAAATGATACAACCTTAAAAAGAATATTTCAACCAGTTAAAGTGGTTGAACCATCTGTTGAAGAAACCATAGAAATTCTTAAAGGCCTCCGCGGAACATATGAGTCGCATTATAAACTTCATTACACAGATGAAGCTCTTGTTGCAGCTGCAAATTTGTCTCAGCAATATGTAAGCGATCGTTTCTTACCTGATAAGGCAATTGATTTGATTGATGAAGCTGGATCACATGTTCAACTTTGTCATGCAAAGAACAAAAAGAGGGGTAATGCTTCTATTCCTAGTGTGAAAAAGTGTGATATTCAACATGTTATTTCTTCTTGGATTGGAGTACCAGTCAGTGATGTATCAAAGGAAGAAGGCGAAAACCTCCTCAATTTAGAAGACATGCTTCACAAACACGTCATCGGTCAAAACGAAGCAATCAGCACAATCTGCCGAGCTATTCGCCGTGCTAGAGTCGGTCTAAGAAATTGCAGAAGGCCTATTGCAAGTTTCATGTTCACCGGTCCTTCAGGCGTAGGAAAAACCGAATTAGCCAATGCAATAGCTACAAACTATTTTGGATCAAAAGATTCATTGATAAGATTAGATATGAGTGAGTACATGGAAAGACACAGTGCAGCTAGATTAATTGGAGCACCTCCTGGCTATGCCGGTTTCCGTGACGGCGGTCAATTAACCGAAGCTATTCGGAGAAATTCGCATGCAGTTGTTTTATTTGATGAGATTGAAAAAGCACATTCAGATGTTTTCAACTTAATGCTACAAATTCTTGATGATGGAAGACTCACAGATGGAAAAGGTCAAACAGTTGACTTTAAAAGCACACTTATTATAATGACTAGCAATCTTGGTAACAACATCATTGAAGGGACAAATAATGAAACTATGCAAATTATTGATCATAAAAAGAATTTGGTTATGGAGGAGCTGAAGAATCATTTTAGACCAGAGTTTTTGAATCGACTTGATGAGATAATTGTTTTTAAAGAACTAACAAAATTGGAAGTGGAACAGATTGCAAATATAATGTTGAGAGAAGTTTGTGAAAAAATGATGGTTAAAGATATACATCTTTCATTGACATGTAGGTTTAGGGATTATGTGATTCAAAATGGATATAACCCTAGCTATGGTGCAAGACCATTAAGAAGGACTATTGCAAGATTTTTGGAAGATACATTGGCTGAAAAGATGTTAAGGAAAGAAATAAAGGAAGGTGACTCAGTTGTTGTTGATATCAATGTTGATGAGGGAAATGTTGTTGTGTTGAATCAAAACAATGTTAAAAGGGAAGATCTTTTTATAAATTCAGATGTTGGTGATTATTTAGCTGATGGAAAGAGAAAAGATATGGTTGGAATTTCATGCAATTTGATGGGAAAAATGTTGGACATGCTTGGACATAGAAAAAGTCCATAA

Protein sequence

>Msa0486590

MLEHLTECAKKVIMAAQKEARFVGHKYISTEHILLGILGDSNGLAGKILNSYGIDFNVSREQVMKLVGRGGGCSGLSCKDIRFTFEAKNVLDFSLKHAKSLGSKNKMKCQIEDKIEENVHHGDVTAEGSKYNQNIFHAVSQNSNLGAKKDDNVNKQKSALEIFGTNLTKLAQEIICRRMKNNPCLIGEPGVGKTSIIQGLAQRILSGYVPEKLKGKKVVALDVADFLYVISNQEFSEERIKCLIKEIELSGNVILFVKEVHHIFNAATSGARSFAYILKHALERGVIQCIFATTVNEHRMHMENDTTLKRIFQPVKVVEPSVEETIEILKGLRGTYESHYKLHYTDEALVAAANLSQQYVSDRFLPDKAIDLIDEAGSHVQLCHAKNKKRGNASIPSVKKCDIQHVISSWIGVPVSDVSKEEGENLLNLEDMLHKHVIGQNEAISTICRAIRRARVGLRNCRRPIASFMFTGPSGVGKTELANAIATNYFGSKDSLIRLDMSEYMERHSAARLIGAPPGYAGFRDGGQLTEAIRRNSHAVVLFDEIEKAHSDVFNLMLQILDDGRLTDGKGQTVDFKSTLIIMTSNLGNNIIEGTNNETMQIIDHKKNLVMEELKNHFRPEFLNRLDEIIVFKELTKLEVEQIANIMLREVCEKMMVKDIHLSLTCRFRDYVIQNGYNPSYGARPLRRTIARFLEDTLAEKMLRKEIKEGDSVVVDINVDEGNVVVLNQNNVKREDLFINSDVGDYLADGKRKDMVGISCNLMGKMLDMLGHRKSP*