Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486590 | KEH34100.1 | 86.232 | 828 | 44 | 4 | 1 | 776 | 1 | 810 | 0.0 | 1424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486590 | sp|P31542|CLPAB_SOLLC | 51.211 | 826 | 296 | 13 | 1 | 728 | 91 | 907 | 0.0 | 781 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486590 | A0A072V7F1 | 86.232 | 828 | 44 | 4 | 1 | 776 | 1 | 810 | 0.0 | 1424 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0411510 | Msa0486590 | 0.832859 | 7.430071e-56 | -8.615850e-47 |
| Msa0455670 | Msa0486590 | 0.900744 | 5.391543e-78 | -8.615850e-47 |
| Msa0258760 | Msa0486590 | 0.834147 | 3.545239e-56 | -8.615850e-47 |
| Msa0323080 | Msa0486590 | 0.812404 | 4.313190e-51 | -8.615850e-47 |
| Msa0344830 | Msa0486590 | 0.805918 | 1.058664e-49 | -8.615850e-47 |
| Msa0363890 | Msa0486590 | 0.883041 | 6.274139e-71 | -8.615850e-47 |
| Msa0486590 | Msa0486600 | 0.916165 | 2.471844e-85 | -8.615850e-47 |
| Msa0486590 | Msa0562440 | 0.824371 | 8.368017e-54 | -8.615850e-47 |
| Msa0486590 | Msa0662650 | 0.800606 | 1.331915e-48 | -8.615850e-47 |
| Msa0486590 | Msa0777230 | 0.811594 | 6.476800e-51 | -8.615850e-47 |
| Msa0486590 | Msa1233500 | 0.819225 | 1.298808e-52 | -8.615850e-47 |
| Msa0486590 | Msa1233890 | 0.806271 | 8.920184e-50 | -8.615850e-47 |
| Msa0486590 | Msa1441190 | 0.800638 | 1.312245e-48 | -8.615850e-47 |
| Msa0486590 | Msa1451620 | -0.828599 | 8.218575e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486590 | MtrunA17_Chr3g0102771 | 84.852 | 845 | 50 | 5 | 1 | 776 | 1 | 836 | 0.0 | 1420 |
| Msa0486590 | MtrunA17_Chr8g0385811 | 50.726 | 826 | 300 | 12 | 1 | 728 | 95 | 911 | 0.0 | 779 |
| Msa0486590 | MtrunA17_Chr3g0134631 | 50.363 | 826 | 303 | 12 | 1 | 728 | 96 | 912 | 0.0 | 773 |
| Msa0486590 | MtrunA17_Chr3g0131711 | 48.263 | 835 | 325 | 12 | 1 | 737 | 91 | 916 | 0.0 | 742 |
| Msa0486590 | MtrunA17_Chr6g0454071 | 48.910 | 321 | 161 | 1 | 402 | 719 | 617 | 937 | 9.23e-104 | 341 |
| Msa0486590 | MtrunA17_Chr6g0454071 | 34.236 | 406 | 235 | 7 | 3 | 382 | 82 | 481 | 1.01e-60 | 221 |
| Msa0486590 | MtrunA17_Chr3g0131351 | 47.507 | 341 | 168 | 4 | 398 | 729 | 616 | 954 | 9.36e-104 | 341 |
| Msa0486590 | MtrunA17_Chr3g0131351 | 44.856 | 243 | 128 | 1 | 173 | 409 | 329 | 571 | 1.73e-52 | 197 |
| Msa0486590 | MtrunA17_Chr7g0218421 | 48.632 | 329 | 158 | 3 | 398 | 719 | 617 | 941 | 2.47e-103 | 340 |
| Msa0486590 | MtrunA17_Chr7g0218421 | 34.568 | 405 | 235 | 6 | 3 | 382 | 86 | 485 | 1.95e-62 | 226 |
| Msa0486590 | MtrunA17_Chr4g0061371 | 43.407 | 364 | 199 | 4 | 397 | 756 | 534 | 894 | 1.56e-101 | 333 |
| Msa0486590 | MtrunA17_Chr4g0061371 | 33.416 | 401 | 246 | 5 | 3 | 382 | 4 | 404 | 1.26e-53 | 200 |
| Msa0486590 | MtrunA17_Chr3g0137071 | 46.769 | 325 | 169 | 1 | 398 | 718 | 625 | 949 | 1.10e-99 | 330 |
| Msa0486590 | MtrunA17_Chr3g0137071 | 35.122 | 410 | 224 | 9 | 4 | 382 | 95 | 493 | 1.84e-64 | 232 |
| Msa0486590 | MtrunA17_Chr7g0225161 | 40.363 | 441 | 242 | 8 | 280 | 716 | 428 | 851 | 2.03e-94 | 314 |
| Msa0486590 | MtrunA17_Chr7g0225161 | 32.990 | 388 | 239 | 6 | 16 | 382 | 17 | 404 | 4.94e-51 | 192 |
| Msa0486590 | MtrunA17_Chr3g0135231 | 38.104 | 517 | 186 | 16 | 1 | 415 | 82 | 566 | 5.03e-88 | 291 |
| Msa0486590 | MtrunA17_Chr3g0135231 | 44.915 | 118 | 64 | 1 | 528 | 645 | 534 | 650 | 3.50e-21 | 98.6 |
| Msa0486590 | MtrunA17_Chr2g0329561 | 40.367 | 327 | 187 | 3 | 406 | 731 | 143 | 462 | 1.53e-78 | 261 |
| Msa0486590 | MtrunA17_Chr2g0277781 | 41.379 | 290 | 159 | 4 | 406 | 692 | 2 | 283 | 1.57e-73 | 241 |
| Msa0486590 | MtrunA17_Chr1g0188061 | 65.882 | 85 | 29 | 0 | 495 | 579 | 233 | 317 | 2.32e-29 | 120 |
| Msa0486590 | MtrunA17_Chr2g0277771 | 30.682 | 176 | 110 | 5 | 583 | 754 | 1 | 168 | 1.86e-20 | 89.7 |
| Msa0486590 | MtrunA17_Chr7g0260931 | 45.238 | 84 | 46 | 0 | 403 | 486 | 11 | 94 | 2.53e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486590 | AT5G50920.1 | 50.483 | 828 | 298 | 12 | 1 | 728 | 94 | 909 | 0.0 | 780 |
| Msa0486590 | AT3G48870.2 | 49.516 | 826 | 310 | 10 | 1 | 728 | 83 | 899 | 0.0 | 771 |
| Msa0486590 | AT3G48870.1 | 49.516 | 826 | 310 | 10 | 1 | 728 | 114 | 930 | 0.0 | 771 |
| Msa0486590 | AT3G48870.4 | 49.516 | 826 | 310 | 10 | 1 | 728 | 114 | 930 | 0.0 | 771 |
| Msa0486590 | AT3G48870.3 | 49.516 | 826 | 310 | 10 | 1 | 728 | 114 | 930 | 0.0 | 771 |
| Msa0486590 | AT5G51070.1 | 37.327 | 868 | 393 | 16 | 1 | 731 | 79 | 932 | 1.63e-178 | 536 |
| Msa0486590 | AT5G15450.1 | 48.287 | 321 | 164 | 1 | 401 | 719 | 614 | 934 | 3.94e-103 | 340 |
| Msa0486590 | AT5G15450.1 | 34.375 | 416 | 221 | 7 | 3 | 382 | 80 | 479 | 3.06e-62 | 226 |
| Msa0486590 | AT2G25140.1 | 48.615 | 325 | 163 | 2 | 398 | 718 | 616 | 940 | 4.08e-102 | 337 |
| Msa0486590 | AT2G25140.1 | 34.928 | 418 | 213 | 9 | 4 | 382 | 87 | 484 | 5.26e-62 | 225 |
| Msa0486590 | AT1G74310.1 | 45.304 | 362 | 177 | 7 | 403 | 754 | 537 | 887 | 3.72e-101 | 333 |
| Msa0486590 | AT1G74310.1 | 46.919 | 211 | 110 | 2 | 174 | 382 | 194 | 404 | 2.34e-52 | 197 |
| Msa0486590 | AT1G74310.2 | 49.821 | 279 | 135 | 3 | 403 | 679 | 537 | 812 | 1.46e-91 | 305 |
| Msa0486590 | AT1G74310.2 | 46.919 | 211 | 110 | 2 | 174 | 382 | 194 | 404 | 1.50e-52 | 196 |
| Msa0486590 | AT4G14670.1 | 43.983 | 241 | 117 | 3 | 159 | 381 | 128 | 368 | 1.11e-53 | 197 |
| Msa0486590 | AT4G14670.1 | 48.031 | 127 | 66 | 0 | 397 | 523 | 496 | 622 | 2.64e-33 | 137 |
| Msa0486590 | AT3G45450.1 | 36.599 | 347 | 163 | 11 | 1 | 328 | 1 | 309 | 3.89e-45 | 166 |
Find 120 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAGCTACAAACTATTT+TGG | 0.143669 | 3_4:-4625803 | Msa0486590:CDS |
| CTTCAATCTTGTCTTCAATT+TGG | 0.192716 | 3_4:+4627651 | None:intergenic |
| TTTCATTGACATGTAGGTTT+AGG | 0.198579 | 3_4:-4625268 | Msa0486590:CDS |
| TTCAACATGTTATTTCTTCT+TGG | 0.203026 | 3_4:-4626045 | Msa0486590:CDS |
| TGAATCAAAACAATGTTAAA+AGG | 0.246322 | 3_4:-4625073 | Msa0486590:CDS |
| CACAGTGCAGCTAGATTAAT+TGG | 0.252437 | 3_4:-4625731 | Msa0486590:CDS |
| CATATACTACTTGGGATTCT+TGG | 0.268673 | 3_4:-4628646 | Msa0486590:CDS |
| CTTGCAATAGTCCTTCTTAA+TGG | 0.273975 | 3_4:+4625200 | None:intergenic |
| TTCATTGACATGTAGGTTTA+GGG | 0.278123 | 3_4:-4625267 | Msa0486590:CDS |
| GATGGTTCAACCACTTTAAC+TGG | 0.293201 | 3_4:+4626514 | None:intergenic |
| GTTTGTCTTGTAAAGATATA+AGG | 0.297746 | 3_4:-4628516 | Msa0486590:CDS |
| AGGGATTATGTGATTCAAAA+TGG | 0.298678 | 3_4:-4625248 | Msa0486590:CDS |
| GAAACCATAGAAATTCTTAA+AGG | 0.304814 | 3_4:-4626484 | Msa0486590:CDS |
| ATCAAATCAATTGCCTTATC+AGG | 0.314089 | 3_4:+4626250 | None:intergenic |
| GTCAATTAACCGAAGCTATT+CGG | 0.314183 | 3_4:-4625673 | Msa0486590:CDS |
| CTACTCCAGGTTCTCCTATA+AGG | 0.314863 | 3_4:+4627163 | None:intergenic |
| GAGGCCTTTAAGAATTTCTA+TGG | 0.327315 | 3_4:+4626480 | None:intergenic |
| CGATCGTTTCTTACCTGATA+AGG | 0.357419 | 3_4:-4626263 | Msa0486590:CDS |
| AGCTATTGCATTGGCTAATT+CGG | 0.361729 | 3_4:+4625817 | None:intergenic |
| ATGTGCAAAGAAAGTAATTA+TGG | 0.364066 | 3_4:-4628719 | Msa0486590:CDS |
| TTCATGTTCACCGGTCCTTC+AGG | 0.371875 | 3_4:-4625851 | Msa0486590:CDS |
| GGGATTCTTGGTGATTCAAA+TGG | 0.372242 | 3_4:-4628634 | Msa0486590:CDS |
| CTTGAATTACACCTCTTTCA+AGG | 0.373725 | 3_4:+4626708 | None:intergenic |
| AGTAATTATGGCTGCACAAA+AGG | 0.386618 | 3_4:-4628707 | Msa0486590:CDS |
| CATGTTATTTCTTCTTGGAT+TGG | 0.389250 | 3_4:-4626040 | Msa0486590:CDS |
| ATGCTACAAATTCTTGATGA+TGG | 0.390372 | 3_4:-4625584 | Msa0486590:CDS |
| ATTATAATGACTAGCAATCT+TGG | 0.395448 | 3_4:-4625512 | Msa0486590:CDS |
| TTGACCGCCGTCACGGAAAC+CGG | 0.402934 | 3_4:+4625691 | None:intergenic |
| ATATTCAATGCAGCAACATC+AGG | 0.405896 | 3_4:-4626764 | Msa0486590:CDS |
| TGGAATTTCATGCAATTTGA+TGG | 0.409908 | 3_4:-4624985 | Msa0486590:CDS |
| TTGTGCTAATTTAGTCAGAT+TGG | 0.426578 | 3_4:+4627484 | None:intergenic |
| TGATTCAGATAATTTGTAGA+AGG | 0.432682 | 3_4:-4627203 | Msa0486590:intron |
| GATGTTAAGGAAAGAAATAA+AGG | 0.443438 | 3_4:-4625150 | Msa0486590:CDS |
| AATGGTCTTGCACCATAGCT+AGG | 0.444974 | 3_4:+4625218 | None:intergenic |
| CATTGGCTGAAAAGATGTTA+AGG | 0.445787 | 3_4:-4625163 | Msa0486590:CDS |
| TTGAAACATGCCCTTGAAAG+AGG | 0.447531 | 3_4:-4626719 | Msa0486590:CDS |
| GGTAGAGGTGGTGGTTGTAG+TGG | 0.448297 | 3_4:-4628538 | Msa0486590:CDS |
| AATATTTCAACCAGTTAAAG+TGG | 0.449508 | 3_4:-4626524 | Msa0486590:CDS |
| CGAATTTCTCCGAATAGCTT+CGG | 0.452426 | 3_4:+4625664 | None:intergenic |
| CCTTGCCTTATAGGAGAACC+TGG | 0.452712 | 3_4:-4627168 | Msa0486590:CDS |
| ATTGATTTGATTGATGAAGC+TGG | 0.454157 | 3_4:-4626238 | Msa0486590:CDS |
| GTGAACATGAAACTTGCAAT+AGG | 0.461655 | 3_4:+4625863 | None:intergenic |
| AGCACAGAACATATACTACT+TGG | 0.463548 | 3_4:-4628655 | Msa0486590:CDS |
| TAGGGAGCAAGTGATGAAGT+TGG | 0.470468 | 3_4:-4628563 | Msa0486590:CDS |
| TGATGGAAAGAGAAAAGATA+TGG | 0.476227 | 3_4:-4625009 | Msa0486590:CDS |
| TCACGGAAACCGGCATAGCC+AGG | 0.477017 | 3_4:+4625701 | None:intergenic |
| AAGTTGGTTGGTAGAGGTGG+TGG | 0.480856 | 3_4:-4628547 | Msa0486590:CDS |
| GGAATTTCATGCAATTTGAT+GGG | 0.482208 | 3_4:-4624984 | Msa0486590:CDS |
| GGCTATGCCGGTTTCCGTGA+CGG | 0.488783 | 3_4:-4625698 | Msa0486590:CDS |
| TTGAATTACACCTCTTTCAA+GGG | 0.490421 | 3_4:+4626709 | None:intergenic |
| ATAGTTTGTAGCTATTGCAT+TGG | 0.490910 | 3_4:+4625808 | None:intergenic |
| TCTTGGTGATTCAAATGGGT+TGG | 0.490997 | 3_4:-4628629 | Msa0486590:CDS |
| AGATTAATTGGAGCACCTCC+TGG | 0.491051 | 3_4:-4625719 | Msa0486590:CDS |
| GAATCAAAACAATGTTAAAA+GGG | 0.491706 | 3_4:-4625072 | Msa0486590:CDS |
| TACATCTTTCATTGACATGT+AGG | 0.492656 | 3_4:-4625274 | Msa0486590:CDS |
| CTTGGTAACAACATCATTGA+AGG | 0.494879 | 3_4:-4625494 | Msa0486590:CDS |
| CAAAAGGAAGCTAGGTTTGT+GGG | 0.498140 | 3_4:-4628691 | Msa0486590:CDS |
| GGATTCTTGGTGATTCAAAT+GGG | 0.503736 | 3_4:-4628633 | Msa0486590:CDS |
| AAGAATCAAGTGTTTAATCA+AGG | 0.508788 | 3_4:-4626837 | Msa0486590:CDS |
| TCCTTTGATACATCACTGAC+TGG | 0.511226 | 3_4:+4626013 | None:intergenic |
| GGAAAGAGAAAAGATATGGT+TGG | 0.517306 | 3_4:-4625005 | Msa0486590:CDS |
| ATTAGATATGAGTGAGTACA+TGG | 0.518212 | 3_4:-4625759 | Msa0486590:CDS |
| GGTGATTCAAATGGGTTGGC+TGG | 0.521182 | 3_4:-4628625 | Msa0486590:CDS |
| AGAACTAACAAAATTGGAAG+TGG | 0.523751 | 3_4:-4625354 | Msa0486590:CDS |
| ATTTGTCTCAGCAATATGTA+AGG | 0.523988 | 3_4:-4626393 | Msa0486590:intron |
| GGAGCACCTCCTGGCTATGC+CGG | 0.527334 | 3_4:-4625710 | Msa0486590:CDS |
| CTTATAGGAGAACCTGGAGT+AGG | 0.527810 | 3_4:-4627162 | Msa0486590:CDS |
| TCTATGGTTTCTTCAACAGA+TGG | 0.528707 | 3_4:+4626496 | None:intergenic |
| GTTGGTGATTATTTAGCTGA+TGG | 0.528783 | 3_4:-4625026 | Msa0486590:CDS |
| TTCTTAGACCGACTCTAGCA+CGG | 0.534762 | 3_4:+4625897 | None:intergenic |
| ATTGCAAGTTTCATGTTCAC+CGG | 0.535119 | 3_4:-4625860 | Msa0486590:CDS |
| GAAGCATGTCTTCTAAATTG+AGG | 0.535628 | 3_4:+4625975 | None:intergenic |
| GGAAGACTCACAGATGGAAA+AGG | 0.536149 | 3_4:-4625563 | Msa0486590:CDS |
| TGGCTGCACAAAAGGAAGCT+AGG | 0.541854 | 3_4:-4628699 | Msa0486590:CDS |
| CTCAAACATGCAAAATCTCT+AGG | 0.547170 | 3_4:-4628457 | Msa0486590:intron |
| CTCTAGCACGGCGAATAGCT+CGG | 0.550856 | 3_4:+4625909 | None:intergenic |
| ATGGTCTTGCACCATAGCTA+GGG | 0.553868 | 3_4:+4625219 | None:intergenic |
| ACCAGTCAGTGATGTATCAA+AGG | 0.553971 | 3_4:-4626014 | Msa0486590:CDS |
| AATGGATATAACCCTAGCTA+TGG | 0.554078 | 3_4:-4625230 | Msa0486590:CDS |
| TCTGACTAAATTAGCACAAG+AGG | 0.556922 | 3_4:-4627480 | Msa0486590:intron |
| CAAAATGTATGCGAAACTGC+GGG | 0.559742 | 3_4:+4626739 | None:intergenic |
| CCAGGTTCTCCTATAAGGCA+AGG | 0.561002 | 3_4:+4627168 | None:intergenic |
| TTATAGGAGAACCTGGAGTA+GGG | 0.567197 | 3_4:-4627161 | Msa0486590:CDS |
| GTGATGAAGTTGGTTGGTAG+AGG | 0.569417 | 3_4:-4628553 | Msa0486590:CDS |
| TGTCATCTTTCTTAGCACCT+AGG | 0.570031 | 3_4:+4627546 | None:intergenic |
| CGGTTAATTGACCGCCGTCA+CGG | 0.572693 | 3_4:+4625684 | None:intergenic |
| GAGCAAGTGATGAAGTTGGT+TGG | 0.572864 | 3_4:-4628559 | Msa0486590:CDS |
| TCAGGTGGTTGCATTGGACG+TGG | 0.573331 | 3_4:-4626903 | Msa0486590:intron |
| TGTTCAACTTTGTCATGCAA+AGG | 0.573596 | 3_4:-4626209 | Msa0486590:intron |
| ATGAAGTTGGTTGGTAGAGG+TGG | 0.573783 | 3_4:-4628550 | Msa0486590:CDS |
| CATGGTGATGTTACTGCAGA+AGG | 0.574349 | 3_4:-4627617 | Msa0486590:CDS |
| GTTGATATCAATGTTGATGA+GGG | 0.577273 | 3_4:-4625110 | Msa0486590:CDS |
| TTAAGGAAAGAAATAAAGGA+AGG | 0.583157 | 3_4:-4625146 | Msa0486590:CDS |
| GCACAGAACATATACTACTT+GGG | 0.584965 | 3_4:-4628654 | Msa0486590:CDS |
| ACAAAAGGAAGCTAGGTTTG+TGG | 0.588969 | 3_4:-4628692 | Msa0486590:CDS |
| TATTCAATGCAGCAACATCA+GGG | 0.590971 | 3_4:-4626763 | Msa0486590:CDS |
| CAGGTTCTCCTATAAGGCAA+GGG | 0.602718 | 3_4:+4627169 | None:intergenic |
| GATGATGGAAGACTCACAGA+TGG | 0.603024 | 3_4:-4625569 | Msa0486590:CDS |
| GTGTCTCAAAACAGTAACCT+AGG | 0.603488 | 3_4:-4627563 | Msa0486590:CDS |
| GCATGTCTTCTAAATTGAGG+AGG | 0.605380 | 3_4:+4625978 | None:intergenic |
| AGTGATGTATCAAAGGAAGA+AGG | 0.606200 | 3_4:-4626007 | Msa0486590:CDS |
| ATGCTTCACAAACACGTCAT+CGG | 0.606617 | 3_4:-4625959 | Msa0486590:CDS |
| ATGGTGCAAGACCATTAAGA+AGG | 0.606956 | 3_4:-4625211 | Msa0486590:CDS |
| TGTTGATATCAATGTTGATG+AGG | 0.608337 | 3_4:-4625111 | Msa0486590:CDS |
| TTCACCGGTCCTTCAGGCGT+AGG | 0.614407 | 3_4:-4625845 | Msa0486590:CDS |
| GCTATTCGCCGTGCTAGAGT+CGG | 0.616317 | 3_4:-4625905 | Msa0486590:CDS |
| GGGAAAACATCAATCATACA+AGG | 0.619938 | 3_4:-4627141 | Msa0486590:CDS |
| TCAAAATGTATGCGAAACTG+CGG | 0.625657 | 3_4:+4626738 | None:intergenic |
| TTGGTAACAACATCATTGAA+GGG | 0.628981 | 3_4:-4625493 | Msa0486590:CDS |
| GAATGAGCACAGAATGCACA+TGG | 0.632257 | 3_4:-4626569 | Msa0486590:CDS |
| ATCAAGGAAATTGAACTAAG+CGG | 0.638205 | 3_4:-4626821 | Msa0486590:CDS |
| TCGGTCTAAGAAATTGCAGA+AGG | 0.646561 | 3_4:-4625886 | Msa0486590:CDS |
| ATTGAAGAAAATGTTCACCA+TGG | 0.649931 | 3_4:-4627635 | Msa0486590:CDS |
| ATTCAATGCAGCAACATCAG+GGG | 0.673350 | 3_4:-4626762 | Msa0486590:CDS |
| AATGCGACTCATATGTTCCG+CGG | 0.684640 | 3_4:+4626458 | None:intergenic |
| GAAATTCTTAAAGGCCTCCG+CGG | 0.691862 | 3_4:-4626475 | Msa0486590:CDS |
| TATGCCGGTTTCCGTGACGG+CGG | 0.702517 | 3_4:-4625695 | Msa0486590:CDS |
| CGGAAACCGGCATAGCCAGG+AGG | 0.705177 | 3_4:+4625704 | None:intergenic |
| GCGACTCATATGTTCCGCGG+AGG | 0.708714 | 3_4:+4626461 | None:intergenic |
| CTTCTGCAGTAACATCACCA+TGG | 0.731974 | 3_4:+4627618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTTTAATGTTAGTA+GGG | - | chr3_4:4625102-4625121 | Msa0486590:CDS | 15.0% |
| !!! | ATGATTTACTTGAATTTTTA+TGG | + | chr3_4:4625349-4625368 | None:intergenic | 15.0% |
| !! | ATAGAATGAAAGAAATTAAT+TGG | + | chr3_4:4625701-4625720 | None:intergenic | 15.0% |
| !!! | TAATAATTACTTTGTTTTTC+AGG | - | chr3_4:4626762-4626781 | Msa0486590:CDS | 15.0% |
| !! | ACTATATAAGACTAATTTAT+TGG | + | chr3_4:4627048-4627067 | None:intergenic | 15.0% |
| !! | TATAATATATGTTGTAGAAT+TGG | + | chr3_4:4627347-4627366 | None:intergenic | 15.0% |
| !! | TATTGATCATAAAAAGAATT+TGG | - | chr3_4:4628236-4628255 | Msa0486590:intron | 15.0% |
| !!! | TTTTAAAGAACTAACAAAAT+TGG | - | chr3_4:4628323-4628342 | Msa0486590:intron | 15.0% |
| !! | GGAAAAATTCTTAATTCTTA+TGG | - | chr3_4:4625079-4625098 | Msa0486590:CDS | 20.0% |
| !!! | GAATTGATTTTAATGTTAGT+AGG | - | chr3_4:4625101-4625120 | Msa0486590:CDS | 20.0% |
| !! | AGTTAATCCTTAAAATTGAA+GGG | + | chr3_4:4625462-4625481 | None:intergenic | 20.0% |
| !! | AAGTTAATCCTTAAAATTGA+AGG | + | chr3_4:4625463-4625482 | None:intergenic | 20.0% |
| !!! | TCAAAGGTAATTTTTCTTTA+GGG | + | chr3_4:4625603-4625622 | None:intergenic | 20.0% |
| !!! | ATCAAAGGTAATTTTTCTTT+AGG | + | chr3_4:4625604-4625623 | None:intergenic | 20.0% |
| !! | AAAGAAAAATTACCTTTGAT+TGG | - | chr3_4:4625604-4625623 | Msa0486590:CDS | 20.0% |
| !! | AAGAAAAATTACCTTTGATT+GGG | - | chr3_4:4625605-4625624 | Msa0486590:CDS | 20.0% |
| !! | CAAATATACACTATATACAA+AGG | + | chr3_4:4627084-4627103 | None:intergenic | 20.0% |
| !!! | TGGTTGAAATATTCTTTTTA+AGG | + | chr3_4:4627152-4627171 | None:intergenic | 20.0% |
| !! | ACTTATAATTCTCAAATGTT+TGG | - | chr3_4:4627525-4627544 | Msa0486590:CDS | 20.0% |
| !! | TCATAAAAAGAATTTGGTTA+TGG | - | chr3_4:4628242-4628261 | Msa0486590:intron | 20.0% |
| !! | TGAATCAAAACAATGTTAAA+AGG | - | chr3_4:4628610-4628629 | Msa0486590:CDS | 20.0% |
| !! | GAATCAAAACAATGTTAAAA+GGG | - | chr3_4:4628611-4628630 | Msa0486590:CDS | 20.0% |
| !!! | CTTTTTATAAATTCAGATGT+TGG | - | chr3_4:4628639-4628658 | Msa0486590:CDS | 20.0% |
| ! | ATGTGCAAAGAAAGTAATTA+TGG | - | chr3_4:4624964-4624983 | Msa0486590:CDS | 25.0% |
| ! | GTTTGTCTTGTAAAGATATA+AGG | - | chr3_4:4625167-4625186 | Msa0486590:CDS | 25.0% |
| !!! | GGTTAAATATATGTTTTGAC+TGG | + | chr3_4:4625328-4625347 | None:intergenic | 25.0% |
| !!! | TAAAGTACCCTTCAATTTTA+AGG | - | chr3_4:4625452-4625471 | Msa0486590:CDS | 25.0% |
| !!! | TCATTTTGAAAAGCATTCAT+AGG | + | chr3_4:4625570-4625589 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTAGGGAAATCAA+AGG | + | chr3_4:4625593-4625612 | None:intergenic | 25.0% |
| ! | TATAAACAAAACTAGAGAAC+AGG | - | chr3_4:4625846-4625865 | Msa0486590:CDS | 25.0% |
| !! | TTTCACATTCTCATACTTTT+TGG | - | chr3_4:4626258-4626277 | Msa0486590:CDS | 25.0% |
| ! | TCAAATAAGCCAATTCAAAT+AGG | + | chr3_4:4626310-4626329 | None:intergenic | 25.0% |
| !!! | TTTTGTACGCTCTTTTTTAT+AGG | - | chr3_4:4626412-4626431 | Msa0486590:CDS | 25.0% |
| !!! | TTTGTACGCTCTTTTTTATA+GGG | - | chr3_4:4626413-4626432 | Msa0486590:CDS | 25.0% |
| !! | TGATTCAGATAATTTGTAGA+AGG | - | chr3_4:4626480-4626499 | Msa0486590:CDS | 25.0% |
| !!! | TAATTACTTTGTTTTTCAGG+TGG | - | chr3_4:4626765-4626784 | Msa0486590:CDS | 25.0% |
| !! | ATCAAATCAAGAATTTTCAG+AGG | - | chr3_4:4626822-4626841 | Msa0486590:CDS | 25.0% |
| ! | AAGAATCAAGTGTTTAATCA+AGG | - | chr3_4:4626846-4626865 | Msa0486590:CDS | 25.0% |
| !! | AAGAATTTTCTCTTGAAACT+TGG | - | chr3_4:4626999-4627018 | Msa0486590:intron | 25.0% |
| ! | AATATTTCAACCAGTTAAAG+TGG | - | chr3_4:4627159-4627178 | Msa0486590:CDS | 25.0% |
| ! | GAAACCATAGAAATTCTTAA+AGG | - | chr3_4:4627199-4627218 | Msa0486590:intron | 25.0% |
| !! | TCTTTTTGTTCTGTTTCAAA+AGG | + | chr3_4:4627579-4627598 | None:intergenic | 25.0% |
| !!! | TTTTGAAACAGAACAAAAAG+AGG | - | chr3_4:4627578-4627597 | Msa0486590:CDS | 25.0% |
| !! | TTTGAAACAGAACAAAAAGA+GGG | - | chr3_4:4627579-4627598 | Msa0486590:CDS | 25.0% |
| !!! | TTCAACATGTTATTTCTTCT+TGG | - | chr3_4:4627638-4627657 | Msa0486590:CDS | 25.0% |
| ! | ATTATAATGACTAGCAATCT+TGG | - | chr3_4:4628171-4628190 | Msa0486590:intron | 25.0% |
| ! | TAAAAAGAATTTGGTTATGG+AGG | - | chr3_4:4628245-4628264 | Msa0486590:intron | 25.0% |
| ! | AGAAGTTTGTGAAAAAATGA+TGG | - | chr3_4:4628377-4628396 | Msa0486590:intron | 25.0% |
| !!! | AAGATTTTTGGAAGATACAT+TGG | - | chr3_4:4628503-4628522 | Msa0486590:CDS | 25.0% |
| ! | GATGTTAAGGAAAGAAATAA+AGG | - | chr3_4:4628533-4628552 | Msa0486590:CDS | 25.0% |
| ! | TTAAGGAAAGAAATAAAGGA+AGG | - | chr3_4:4628537-4628556 | Msa0486590:CDS | 25.0% |
| ! | TTATTTGGTTTCCCAATCAA+AGG | + | chr3_4:4625619-4625638 | None:intergenic | 30.0% |
| ACTCAAGTGATTCAAAATCA+AGG | - | chr3_4:4625817-4625836 | Msa0486590:CDS | 30.0% | |
| ATTGAAGAAAATGTTCACCA+TGG | - | chr3_4:4625970-4625989 | Msa0486590:CDS | 30.0% | |
| CTTCAATCTTGTCTTCAATT+TGG | + | chr3_4:4625957-4625976 | None:intergenic | 30.0% | |
| ATTGAAGAAAATGTTCACCA+TGG | - | chr3_4:4625970-4625989 | Msa0486590:CDS | 30.0% | |
| TTGTGCTAATTTAGTCAGAT+TGG | + | chr3_4:4626202-4626221 | None:intergenic | 30.0% | |
| ATATGTTCCTGAAAAACTCA+AGG | - | chr3_4:4626589-4626608 | Msa0486590:CDS | 30.0% | |
| TATGTTCCTGAAAAACTCAA+GGG | - | chr3_4:4626590-4626609 | Msa0486590:CDS | 30.0% | |
| ! | GATACCGTGATTTAAGTTAA+AGG | + | chr3_4:4626738-4626757 | None:intergenic | 30.0% |
| ATCAAGGAAATTGAACTAAG+CGG | - | chr3_4:4626862-4626881 | Msa0486590:CDS | 30.0% | |
| TTGAATTACACCTCTTTCAA+GGG | + | chr3_4:4626977-4626996 | None:intergenic | 30.0% | |
| GACTAATGTGTGAAATGTAA+AGG | + | chr3_4:4627026-4627045 | None:intergenic | 30.0% | |
| ATTTGTCTCAGCAATATGTA+AGG | - | chr3_4:4627290-4627309 | Msa0486590:intron | 30.0% | |
| ATCAAATCAATTGCCTTATC+AGG | + | chr3_4:4627436-4627455 | None:intergenic | 30.0% | |
| !! | ATTGATTTGATTGATGAAGC+TGG | - | chr3_4:4627445-4627464 | Msa0486590:intron | 30.0% |
| ! | TGTCATGCAAAGGTATAAAA+TGG | - | chr3_4:4627484-4627503 | Msa0486590:CDS | 30.0% |
| TTGAAACAGAACAAAAAGAG+GGG | - | chr3_4:4627580-4627599 | Msa0486590:CDS | 30.0% | |
| !!! | ATATCACACTTTTTCACACT+AGG | + | chr3_4:4627619-4627638 | None:intergenic | 30.0% |
| !! | CATGTTATTTCTTCTTGGAT+TGG | - | chr3_4:4627643-4627662 | Msa0486590:CDS | 30.0% |
| ! | ATAGTTTGTAGCTATTGCAT+TGG | + | chr3_4:4627878-4627897 | None:intergenic | 30.0% |
| ! | GCAATAGCTACAAACTATTT+TGG | - | chr3_4:4627880-4627899 | Msa0486590:intron | 30.0% |
| ATTAGATATGAGTGAGTACA+TGG | - | chr3_4:4627924-4627943 | Msa0486590:intron | 30.0% | |
| ATGCTACAAATTCTTGATGA+TGG | - | chr3_4:4628099-4628118 | Msa0486590:intron | 30.0% | |
| ! | TTGGTAACAACATCATTGAA+GGG | - | chr3_4:4628190-4628209 | Msa0486590:intron | 30.0% |
| AGAACTAACAAAATTGGAAG+TGG | - | chr3_4:4628329-4628348 | Msa0486590:intron | 30.0% | |
| TACATCTTTCATTGACATGT+AGG | - | chr3_4:4628409-4628428 | Msa0486590:intron | 30.0% | |
| TTTCATTGACATGTAGGTTT+AGG | - | chr3_4:4628415-4628434 | Msa0486590:intron | 30.0% | |
| TTCATTGACATGTAGGTTTA+GGG | - | chr3_4:4628416-4628435 | Msa0486590:intron | 30.0% | |
| AGGGATTATGTGATTCAAAA+TGG | - | chr3_4:4628435-4628454 | Msa0486590:intron | 30.0% | |
| ! | AAGGACTATTGCAAGATTTT+TGG | - | chr3_4:4628491-4628510 | Msa0486590:CDS | 30.0% |
| TGTTGATATCAATGTTGATG+AGG | - | chr3_4:4628572-4628591 | Msa0486590:CDS | 30.0% | |
| ! | GTTGATATCAATGTTGATGA+GGG | - | chr3_4:4628573-4628592 | Msa0486590:CDS | 30.0% |
| TGATGGAAAGAGAAAAGATA+TGG | - | chr3_4:4628674-4628693 | Msa0486590:CDS | 30.0% | |
| TGGAATTTCATGCAATTTGA+TGG | - | chr3_4:4628698-4628717 | Msa0486590:CDS | 30.0% | |
| GGAATTTCATGCAATTTGAT+GGG | - | chr3_4:4628699-4628718 | Msa0486590:CDS | 30.0% | |
| CAATTTGATGGGAAAAATGT+TGG | - | chr3_4:4628710-4628729 | Msa0486590:CDS | 30.0% | |
| AGTAATTATGGCTGCACAAA+AGG | - | chr3_4:4624976-4624995 | Msa0486590:CDS | 35.0% | |
| AGCACAGAACATATACTACT+TGG | - | chr3_4:4625028-4625047 | Msa0486590:CDS | 35.0% | |
| GCACAGAACATATACTACTT+GGG | - | chr3_4:4625029-4625048 | Msa0486590:CDS | 35.0% | |
| CATATACTACTTGGGATTCT+TGG | - | chr3_4:4625037-4625056 | Msa0486590:CDS | 35.0% | |
| ! | GGATTCTTGGTGATTCAAAT+GGG | - | chr3_4:4625050-4625069 | Msa0486590:CDS | 35.0% |
| CTCAAACATGCAAAATCTCT+AGG | - | chr3_4:4625226-4625245 | Msa0486590:CDS | 35.0% | |
| AACTTTATCTACATGTGAGC+AGG | - | chr3_4:4625924-4625943 | Msa0486590:CDS | 35.0% | |
| ! | AAGTCTGCTCTTGAGATTTT+TGG | - | chr3_4:4626174-4626193 | Msa0486590:intron | 35.0% |
| TCTGACTAAATTAGCACAAG+AGG | - | chr3_4:4626203-4626222 | Msa0486590:intron | 35.0% | |
| CTAAATTAGCACAAGAGGTA+TGG | - | chr3_4:4626208-4626227 | Msa0486590:intron | 35.0% | |
| TACCTAGCAAATACTAATCG+AGG | - | chr3_4:4626284-4626303 | Msa0486590:intron | 35.0% | |
| TAATCGAGGCCTATTTGAAT+TGG | - | chr3_4:4626298-4626317 | Msa0486590:intron | 35.0% | |
| GTATTGTTTGGATGAGCTTA+TGG | - | chr3_4:4626348-4626367 | Msa0486590:intron | 35.0% | |
| AAAAACAACCCTTGCCTTAT+AGG | - | chr3_4:4626506-4626525 | Msa0486590:CDS | 35.0% | |
| GGGAAAACATCAATCATACA+AGG | - | chr3_4:4626542-4626561 | Msa0486590:CDS | 35.0% | |
| ATGTTCCTGAAAAACTCAAG+GGG | - | chr3_4:4626591-4626610 | Msa0486590:CDS | 35.0% | |
| ! | TTTTTCCCCTTGAGTTTTTC+AGG | + | chr3_4:4626599-4626618 | None:intergenic | 35.0% |
| TGAAAAACTCAAGGGGAAAA+AGG | - | chr3_4:4626598-4626617 | Msa0486590:intron | 35.0% | |
| GTTCAATTATTGAGCAGCAA+CGG | - | chr3_4:4626712-4626731 | Msa0486590:CDS | 35.0% | |
| ! | ACGGCCTTTAACTTAAATCA+CGG | - | chr3_4:4626731-4626750 | Msa0486590:CDS | 35.0% |
| ATATTCAATGCAGCAACATC+AGG | - | chr3_4:4626919-4626938 | Msa0486590:intron | 35.0% | |
| TATTCAATGCAGCAACATCA+GGG | - | chr3_4:4626920-4626939 | Msa0486590:intron | 35.0% | |
| TCAAAATGTATGCGAAACTG+CGG | + | chr3_4:4626948-4626967 | None:intergenic | 35.0% | |
| CTTGAATTACACCTCTTTCA+AGG | + | chr3_4:4626978-4626997 | None:intergenic | 35.0% | |
| TCTATGGTTTCTTCAACAGA+TGG | + | chr3_4:4627190-4627209 | None:intergenic | 35.0% | |
| ! | GAGGCCTTTAAGAATTTCTA+TGG | + | chr3_4:4627206-4627225 | None:intergenic | 35.0% |
| TGTTCAACTTTGTCATGCAA+AGG | - | chr3_4:4627474-4627493 | Msa0486590:intron | 35.0% | |
| AGTGATGTATCAAAGGAAGA+AGG | - | chr3_4:4627676-4627695 | Msa0486590:CDS | 35.0% | |
| GAAGCATGTCTTCTAAATTG+AGG | + | chr3_4:4627711-4627730 | None:intergenic | 35.0% | |
| GTGAACATGAAACTTGCAAT+AGG | + | chr3_4:4627823-4627842 | None:intergenic | 35.0% | |
| ATTGCAAGTTTCATGTTCAC+CGG | - | chr3_4:4627823-4627842 | Msa0486590:intron | 35.0% | |
| !! | AGCTATTGCATTGGCTAATT+CGG | + | chr3_4:4627869-4627888 | None:intergenic | 35.0% |
| GTCAATTAACCGAAGCTATT+CGG | - | chr3_4:4628010-4628029 | Msa0486590:intron | 35.0% | |
| ! | CTTGGTAACAACATCATTGA+AGG | - | chr3_4:4628189-4628208 | Msa0486590:intron | 35.0% |
| ! | TCAAGTCGATTCAAAAACTC+TGG | + | chr3_4:4628291-4628310 | None:intergenic | 35.0% |
| AATGGATATAACCCTAGCTA+TGG | - | chr3_4:4628453-4628472 | Msa0486590:intron | 35.0% | |
| CTTGCAATAGTCCTTCTTAA+TGG | + | chr3_4:4628486-4628505 | None:intergenic | 35.0% | |
| ! | CATTGGCTGAAAAGATGTTA+AGG | - | chr3_4:4628520-4628539 | Msa0486590:CDS | 35.0% |
| !! | GTTGGTGATTATTTAGCTGA+TGG | - | chr3_4:4628657-4628676 | Msa0486590:CDS | 35.0% |
| GGAAAGAGAAAAGATATGGT+TGG | - | chr3_4:4628678-4628697 | Msa0486590:CDS | 35.0% | |
| ACAAAAGGAAGCTAGGTTTG+TGG | - | chr3_4:4624991-4625010 | Msa0486590:CDS | 40.0% | |
| CAAAAGGAAGCTAGGTTTGT+GGG | - | chr3_4:4624992-4625011 | Msa0486590:CDS | 40.0% | |
| ! | GGGATTCTTGGTGATTCAAA+TGG | - | chr3_4:4625049-4625068 | Msa0486590:CDS | 40.0% |
| ! | TCTTGGTGATTCAAATGGGT+TGG | - | chr3_4:4625054-4625073 | Msa0486590:CDS | 40.0% |
| GAGGCATAACAAACTATGTG+AGG | + | chr3_4:4625730-4625749 | None:intergenic | 40.0% | |
| !! | CACATAGTTTGTTATGCCTC+AGG | - | chr3_4:4625730-4625749 | Msa0486590:CDS | 40.0% |
| !! | GACACAATGCACCTACTTTT+GGG | - | chr3_4:4625766-4625785 | Msa0486590:CDS | 40.0% |
| !! | ACACAATGCACCTACTTTTG+GGG | - | chr3_4:4625767-4625786 | Msa0486590:CDS | 40.0% |
| !!! | TACTTTTGGGGTTGCTTCAA+GGG | - | chr3_4:4625779-4625798 | Msa0486590:CDS | 40.0% |
| TTATTCTTAGAACCTTCCGC+AGG | + | chr3_4:4626003-4626022 | None:intergenic | 40.0% | |
| GTGTCTCAAAACAGTAACCT+AGG | - | chr3_4:4626120-4626139 | Msa0486590:intron | 40.0% | |
| TGTCATCTTTCTTAGCACCT+AGG | + | chr3_4:4626140-4626159 | None:intergenic | 40.0% | |
| ! | TAGCACAAGAGGTATGGTAA+TGG | - | chr3_4:4626214-4626233 | Msa0486590:CDS | 40.0% |
| ! | GGTAAACTTCACCCTTTTGT+GGG | - | chr3_4:4626434-4626453 | Msa0486590:CDS | 40.0% |
| TTATAGGAGAACCTGGAGTA+GGG | - | chr3_4:4626522-4626541 | Msa0486590:CDS | 40.0% | |
| ! | ATTGATGTTTTCCCTACTCC+AGG | + | chr3_4:4626536-4626555 | None:intergenic | 40.0% |
| ! | CTTGCTCAGAGAATTTTGAG+TGG | - | chr3_4:4626566-4626585 | Msa0486590:CDS | 40.0% |
| ACCTATTCGTTACTTAGTGC+TGG | - | chr3_4:4626642-4626661 | Msa0486590:intron | 40.0% | |
| ACCAGCACTAAGTAACGAAT+AGG | + | chr3_4:4626646-4626665 | None:intergenic | 40.0% | |
| TGCTGGTATTGTGAAATTCG+TGG | - | chr3_4:4626659-4626678 | Msa0486590:intron | 40.0% | |
| !!! | TGTTTTTCAGGTGGTTGCAT+TGG | - | chr3_4:4626774-4626793 | Msa0486590:CDS | 40.0% |
| ATTCAATGCAGCAACATCAG+GGG | - | chr3_4:4626921-4626940 | Msa0486590:intron | 40.0% | |
| CAAAATGTATGCGAAACTGC+GGG | + | chr3_4:4626947-4626966 | None:intergenic | 40.0% | |
| TTGAAACATGCCCTTGAAAG+AGG | - | chr3_4:4626964-4626983 | Msa0486590:intron | 40.0% | |
| GATGGTTCAACCACTTTAAC+TGG | + | chr3_4:4627172-4627191 | None:intergenic | 40.0% | |
| CGATCGTTTCTTACCTGATA+AGG | - | chr3_4:4627420-4627439 | Msa0486590:intron | 40.0% | |
| ACCAGTCAGTGATGTATCAA+AGG | - | chr3_4:4627669-4627688 | Msa0486590:CDS | 40.0% | |
| TCCTTTGATACATCACTGAC+TGG | + | chr3_4:4627673-4627692 | None:intergenic | 40.0% | |
| GCATGTCTTCTAAATTGAGG+AGG | + | chr3_4:4627708-4627727 | None:intergenic | 40.0% | |
| ATGCTTCACAAACACGTCAT+CGG | - | chr3_4:4627724-4627743 | Msa0486590:intron | 40.0% | |
| TCGGTCTAAGAAATTGCAGA+AGG | - | chr3_4:4627797-4627816 | Msa0486590:intron | 40.0% | |
| CACAGTGCAGCTAGATTAAT+TGG | - | chr3_4:4627952-4627971 | Msa0486590:intron | 40.0% | |
| CGAATTTCTCCGAATAGCTT+CGG | + | chr3_4:4628022-4628041 | None:intergenic | 40.0% | |
| ATGGTGCAAGACCATTAAGA+AGG | - | chr3_4:4628472-4628491 | Msa0486590:CDS | 40.0% | |
| GGAAAAATGTTGGACATGCT+TGG | - | chr3_4:4628720-4628739 | Msa0486590:CDS | 40.0% | |
| TAGGGAGCAAGTGATGAAGT+TGG | - | chr3_4:4625120-4625139 | Msa0486590:CDS | 45.0% | |
| ! | GAGCAAGTGATGAAGTTGGT+TGG | - | chr3_4:4625124-4625143 | Msa0486590:CDS | 45.0% |
| !! | GTGATGAAGTTGGTTGGTAG+AGG | - | chr3_4:4625130-4625149 | Msa0486590:CDS | 45.0% |
| !! | ATGAAGTTGGTTGGTAGAGG+TGG | - | chr3_4:4625133-4625152 | Msa0486590:CDS | 45.0% |
| TGCCTCAGGTTATGATCAAG+TGG | - | chr3_4:4625744-4625763 | Msa0486590:CDS | 45.0% | |
| GTCCACTTGATCATAACCTG+AGG | + | chr3_4:4625749-4625768 | None:intergenic | 45.0% | |
| ! | GGACACAATGCACCTACTTT+TGG | - | chr3_4:4625765-4625784 | Msa0486590:CDS | 45.0% |
| CTTGAAGCAACCCCAAAAGT+AGG | + | chr3_4:4625780-4625799 | None:intergenic | 45.0% | |
| !!! | CTACTTTTGGGGTTGCTTCA+AGG | - | chr3_4:4625778-4625797 | Msa0486590:CDS | 45.0% |
| GCTTCAAGGGTCTAATAGTG+TGG | - | chr3_4:4625792-4625811 | Msa0486590:CDS | 45.0% | |
| CTTCTGCAGTAACATCACCA+TGG | + | chr3_4:4626068-4626087 | None:intergenic | 45.0% | |
| ! | CATGGTGATGTTACTGCAGA+AGG | - | chr3_4:4626066-4626085 | Msa0486590:CDS | 45.0% |
| GGCCTCGATTAGTATTTGCT+AGG | + | chr3_4:4626289-4626308 | None:intergenic | 45.0% | |
| CTAGCACCTGTCGTATTGTT+TGG | - | chr3_4:4626336-4626355 | Msa0486590:intron | 45.0% | |
| GCTCATCCAAACAATACGAC+AGG | + | chr3_4:4626345-4626364 | None:intergenic | 45.0% | |
| ! | GGGTAAACTTCACCCTTTTG+TGG | - | chr3_4:4626433-4626452 | Msa0486590:CDS | 45.0% |
| ! | AACTTCACCCTTTTGTGGGA+AGG | - | chr3_4:4626438-4626457 | Msa0486590:CDS | 45.0% |
| ! | ACTTCACCCTTTTGTGGGAA+GGG | - | chr3_4:4626439-4626458 | Msa0486590:CDS | 45.0% |
| CAGGTTCTCCTATAAGGCAA+GGG | + | chr3_4:4626517-4626536 | None:intergenic | 45.0% | |
| CTACTCCAGGTTCTCCTATA+AGG | + | chr3_4:4626523-4626542 | None:intergenic | 45.0% | |
| CTTATAGGAGAACCTGGAGT+AGG | - | chr3_4:4626521-4626540 | Msa0486590:CDS | 45.0% | |
| GAATGAGCACAGAATGCACA+TGG | - | chr3_4:4627114-4627133 | Msa0486590:CDS | 45.0% | |
| GAAATTCTTAAAGGCCTCCG+CGG | - | chr3_4:4627208-4627227 | Msa0486590:intron | 45.0% | |
| AATGCGACTCATATGTTCCG+CGG | + | chr3_4:4627228-4627247 | None:intergenic | 45.0% | |
| ! | TTCTTAGACCGACTCTAGCA+CGG | + | chr3_4:4627789-4627808 | None:intergenic | 45.0% |
| ! | AGATTAATTGGAGCACCTCC+TGG | - | chr3_4:4627964-4627983 | Msa0486590:intron | 45.0% |
| !! | GATGATGGAAGACTCACAGA+TGG | - | chr3_4:4628114-4628133 | Msa0486590:intron | 45.0% |
| GGAAGACTCACAGATGGAAA+AGG | - | chr3_4:4628120-4628139 | Msa0486590:intron | 45.0% | |
| ! | ATGGTCTTGCACCATAGCTA+GGG | + | chr3_4:4628467-4628486 | None:intergenic | 45.0% |
| ! | AATGGTCTTGCACCATAGCT+AGG | + | chr3_4:4628468-4628487 | None:intergenic | 45.0% |
| !! | TATTTAAACAAAAATAAATA+AGG | + | chr3_4:4625524-4625543 | None:intergenic | 5.0% |
| !!! | AAAATTTAATTCATTTTATT+TGG | + | chr3_4:4625634-4625653 | None:intergenic | 5.0% |
| !!! | TGAATTAAATTTTTTTTTTT+TGG | - | chr3_4:4625641-4625660 | Msa0486590:CDS | 5.0% |
| TGGCTGCACAAAAGGAAGCT+AGG | - | chr3_4:4624984-4625003 | Msa0486590:CDS | 50.0% | |
| !! | GGTGATTCAAATGGGTTGGC+TGG | - | chr3_4:4625058-4625077 | Msa0486590:CDS | 50.0% |
| !! | AAGTTGGTTGGTAGAGGTGG+TGG | - | chr3_4:4625136-4625155 | Msa0486590:CDS | 50.0% |
| ! | TCACCATGGTGATGTACCTG+CGG | - | chr3_4:4625984-4626003 | Msa0486590:CDS | 50.0% |
| GCTCTTCCCTTCCCACAAAA+GGG | + | chr3_4:4626448-4626467 | None:intergenic | 50.0% | |
| TGCTCTTCCCTTCCCACAAA+AGG | + | chr3_4:4626449-4626468 | None:intergenic | 50.0% | |
| ! | TTTTGTGGGAAGGGAAGAGC+AGG | - | chr3_4:4626448-4626467 | Msa0486590:CDS | 50.0% |
| CCAGGTTCTCCTATAAGGCA+AGG | + | chr3_4:4626518-4626537 | None:intergenic | 50.0% | |
| CCTTGCCTTATAGGAGAACC+TGG | - | chr3_4:4626515-4626534 | Msa0486590:CDS | 50.0% | |
| TTCATGTTCACCGGTCCTTC+AGG | - | chr3_4:4627832-4627851 | Msa0486590:intron | 50.0% | |
| ! | TTTTCCTACGCCTGAAGGAC+CGG | + | chr3_4:4627845-4627864 | None:intergenic | 50.0% |
| ! | TCGGTTTTTCCTACGCCTGA+AGG | + | chr3_4:4627850-4627869 | None:intergenic | 50.0% |
| ! | GGTAGAGGTGGTGGTTGTAG+TGG | - | chr3_4:4625145-4625164 | Msa0486590:CDS | 55.0% |
| CTTCCGCAGGTACATCACCA+TGG | + | chr3_4:4625990-4626009 | None:intergenic | 55.0% | |
| ! | CATGGTGATGTACCTGCGGA+AGG | - | chr3_4:4625988-4626007 | Msa0486590:CDS | 55.0% |
| TCAGGTGGTTGCATTGGACG+TGG | - | chr3_4:4626780-4626799 | Msa0486590:CDS | 55.0% | |
| CTCTAGCACGGCGAATAGCT+CGG | + | chr3_4:4627777-4627796 | None:intergenic | 55.0% | |
| GCTATTCGCCGTGCTAGAGT+CGG | - | chr3_4:4627778-4627797 | Msa0486590:intron | 55.0% | |
| CGGTTAATTGACCGCCGTCA+CGG | + | chr3_4:4628002-4628021 | None:intergenic | 55.0% | |
| TGTGGGAAGGGAAGAGCAGG+TGG | - | chr3_4:4626451-4626470 | Msa0486590:CDS | 60.0% | |
| GCGACTCATATGTTCCGCGG+AGG | + | chr3_4:4627225-4627244 | None:intergenic | 60.0% | |
| TTCACCGGTCCTTCAGGCGT+AGG | - | chr3_4:4627838-4627857 | Msa0486590:intron | 60.0% | |
| TCACGGAAACCGGCATAGCC+AGG | + | chr3_4:4627985-4628004 | None:intergenic | 60.0% | |
| !! | GGCTATGCCGGTTTCCGTGA+CGG | - | chr3_4:4627985-4628004 | Msa0486590:intron | 60.0% |
| !! | TATGCCGGTTTCCGTGACGG+CGG | - | chr3_4:4627988-4628007 | Msa0486590:intron | 60.0% |
| TTGACCGCCGTCACGGAAAC+CGG | + | chr3_4:4627995-4628014 | None:intergenic | 60.0% | |
| ! | GGAGCACCTCCTGGCTATGC+CGG | - | chr3_4:4627973-4627992 | Msa0486590:intron | 65.0% |
| CGGAAACCGGCATAGCCAGG+AGG | + | chr3_4:4627982-4628001 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 4624944 | 4628761 | 4624944 | ID=Msa0486590;Name=Msa0486590 |
| chr3_4 | mRNA | 4624944 | 4628761 | 4624944 | ID=Msa0486590-mRNA-1;Parent=Msa0486590;Name=Msa0486590-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0|0|1|1|1|7|0|776 |
| chr3_4 | exon | 4628458 | 4628761 | 4628458 | ID=Msa0486590-mRNA-1:exon:1775;Parent=Msa0486590-mRNA-1 |
| chr3_4 | exon | 4627481 | 4627695 | 4627481 | ID=Msa0486590-mRNA-1:exon:1774;Parent=Msa0486590-mRNA-1 |
| chr3_4 | exon | 4627086 | 4627217 | 4627086 | ID=Msa0486590-mRNA-1:exon:1773;Parent=Msa0486590-mRNA-1 |
| chr3_4 | exon | 4626709 | 4626921 | 4626709 | ID=Msa0486590-mRNA-1:exon:1772;Parent=Msa0486590-mRNA-1 |
| chr3_4 | exon | 4626394 | 4626611 | 4626394 | ID=Msa0486590-mRNA-1:exon:1771;Parent=Msa0486590-mRNA-1 |
| chr3_4 | exon | 4626210 | 4626285 | 4626210 | ID=Msa0486590-mRNA-1:exon:1770;Parent=Msa0486590-mRNA-1 |
| chr3_4 | exon | 4624944 | 4626116 | 4624944 | ID=Msa0486590-mRNA-1:exon:1769;Parent=Msa0486590-mRNA-1 |
| chr3_4 | CDS | 4628458 | 4628761 | 4628458 | ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1 |
| chr3_4 | CDS | 4627481 | 4627695 | 4627481 | ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1 |
| chr3_4 | CDS | 4627086 | 4627217 | 4627086 | ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1 |
| chr3_4 | CDS | 4626709 | 4626921 | 4626709 | ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1 |
| chr3_4 | CDS | 4626394 | 4626611 | 4626394 | ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1 |
| chr3_4 | CDS | 4626210 | 4626285 | 4626210 | ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1 |
| chr3_4 | CDS | 4624944 | 4626116 | 4624944 | ID=Msa0486590-mRNA-1:cds;Parent=Msa0486590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
