Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457530 | XP_013460223.2 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 1.51e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457530 | sp|Q9M022|AIRP2_ARATH | 62.963 | 243 | 89 | 1 | 1 | 243 | 1 | 242 | 2.56e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457530 | A0A396ISD6 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 7.22e-178 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0192890 | Msa0457530 | 0.809545 | 1.794310e-50 | -8.615850e-47 |
| Msa0412820 | Msa0457530 | 0.883770 | 3.385554e-71 | -8.615850e-47 |
| Msa0457530 | Msa0504430 | 0.904252 | 1.490100e-79 | -8.615850e-47 |
| Msa0457530 | Msa0783680 | 0.803604 | 3.220960e-49 | -8.615850e-47 |
| Msa0457530 | Msa1258600 | 0.802995 | 4.304861e-49 | -8.615850e-47 |
| Msa0457530 | Msa1335090 | 0.807360 | 5.251093e-50 | -8.615850e-47 |
| Msa0457530 | Msa1400940 | 0.800675 | 1.289338e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457530 | MtrunA17_Chr3g0104651 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 0.0 | 498 |
| Msa0457530 | MtrunA17_Chr4g0047521 | 63.374 | 243 | 88 | 1 | 1 | 243 | 7 | 248 | 1.09e-110 | 318 |
| Msa0457530 | MtrunA17_Chr2g0281861 | 63.866 | 238 | 86 | 0 | 6 | 243 | 14 | 251 | 4.00e-109 | 314 |
| Msa0457530 | MtrunA17_Chr4g0006201 | 61.062 | 226 | 88 | 0 | 6 | 231 | 10 | 235 | 1.93e-103 | 300 |
| Msa0457530 | MtrunA17_Chr7g0242261 | 61.333 | 225 | 86 | 1 | 6 | 229 | 25 | 249 | 1.75e-99 | 290 |
| Msa0457530 | MtrunA17_Chr8g0376861 | 45.417 | 240 | 124 | 3 | 6 | 238 | 10 | 249 | 8.72e-65 | 202 |
| Msa0457530 | MtrunA17_Chr3g0123161 | 44.215 | 242 | 126 | 3 | 6 | 238 | 13 | 254 | 1.70e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457530 | AT3G47160.1 | 63.362 | 232 | 85 | 0 | 1 | 232 | 1 | 232 | 3.52e-111 | 320 |
| Msa0457530 | AT5G01520.1 | 62.963 | 243 | 89 | 1 | 1 | 243 | 1 | 242 | 2.60e-108 | 312 |
| Msa0457530 | AT3G47160.2 | 60.246 | 244 | 85 | 1 | 1 | 232 | 1 | 244 | 1.71e-107 | 311 |
| Msa0457530 | AT5G58787.1 | 63.291 | 237 | 84 | 1 | 1 | 237 | 1 | 234 | 2.27e-103 | 300 |
| Msa0457530 | AT3G47160.3 | 63.590 | 195 | 71 | 0 | 38 | 232 | 1 | 195 | 9.09e-93 | 271 |
| Msa0457530 | AT5G58787.2 | 59.494 | 237 | 78 | 2 | 1 | 237 | 1 | 219 | 1.09e-91 | 270 |
| Msa0457530 | AT5G58787.3 | 57.604 | 217 | 74 | 2 | 21 | 237 | 2 | 200 | 1.63e-79 | 238 |
| Msa0457530 | AT5G01520.2 | 63.473 | 167 | 61 | 0 | 6 | 172 | 5 | 171 | 1.02e-74 | 224 |
| Msa0457530 | AT1G24440.1 | 44.309 | 246 | 133 | 3 | 1 | 242 | 5 | 250 | 2.51e-65 | 203 |
| Msa0457530 | AT1G13195.1 | 43.096 | 239 | 129 | 3 | 6 | 238 | 16 | 253 | 5.20e-63 | 198 |
| Msa0457530 | AT1G24440.2 | 43.519 | 216 | 118 | 3 | 31 | 242 | 3 | 218 | 3.09e-55 | 176 |
| Msa0457530 | AT1G13195.2 | 42.105 | 209 | 114 | 3 | 36 | 238 | 8 | 215 | 6.02e-53 | 171 |
Find 46 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTAAATTATTGTCCAAAA+TGG | 0.208869 | 3_3:-52534240 | None:intergenic |
| CAGAATCTTACAATTCTCTT+TGG | 0.221212 | 3_3:-52534106 | None:intergenic |
| TTGTACTTGTAAATCCATTT+TGG | 0.225211 | 3_3:+52534226 | Msa0457530:three_prime_UTR |
| TCAGAAAGGTGTCACAGATT+TGG | 0.314514 | 3_3:+52532899 | Msa0457530:CDS |
| CGCCAGAGTTTACTCTCTTC+AGG | 0.314536 | 3_3:-52534032 | None:intergenic |
| CACATTTGGTGGCAACAATT+AGG | 0.316903 | 3_3:-52533062 | None:intergenic |
| TCAACATTTATGCAGACATA+TGG | 0.362672 | 3_3:+52532647 | Msa0457530:intron |
| TACCGACTTGCTGGTGCTCT+TGG | 0.372137 | 3_3:+52532218 | Msa0457530:CDS |
| TGGACTGACTACCGACTTGC+TGG | 0.374726 | 3_3:+52532209 | Msa0457530:CDS |
| CATCCTCCTTCTTTATCCCT+TGG | 0.389896 | 3_3:-52532128 | None:intergenic |
| TTTATGCAGACATATGGAAA+TGG | 0.389922 | 3_3:+52532653 | Msa0457530:intron |
| CTCCTTCTTTATCCCTTGGA+TGG | 0.400445 | 3_3:-52532124 | None:intergenic |
| TGTAACACTTGAAACACATT+TGG | 0.405912 | 3_3:-52533076 | None:intergenic |
| GAGTAAACTCTGGCGACCTT+TGG | 0.421140 | 3_3:+52534040 | Msa0457530:CDS |
| ACAGGAATGTGGAGTTTGCT+TGG | 0.445145 | 3_3:+52533016 | Msa0457530:CDS |
| CTTCAGGCTATCCCGGCAAA+AGG | 0.462552 | 3_3:-52534016 | None:intergenic |
| GCTCAGAATTCTAATTTATG+TGG | 0.464503 | 3_3:+52532244 | Msa0457530:CDS |
| AACACTTGAAACACATTTGG+TGG | 0.465530 | 3_3:-52533073 | None:intergenic |
| TTCAGGCTATCCCGGCAAAA+GGG | 0.465840 | 3_3:-52534015 | None:intergenic |
| TAGGACACATGTCTTGGGTC+TGG | 0.466508 | 3_3:-52534162 | None:intergenic |
| GGATCATAGGACACATGTCT+TGG | 0.474901 | 3_3:-52534168 | None:intergenic |
| CTTGGGTCTGGAATAATAAG+AGG | 0.478210 | 3_3:-52534150 | None:intergenic |
| GTTTCAAGTGTTACAGAGAA+TGG | 0.480502 | 3_3:+52533084 | Msa0457530:CDS |
| TTACTCTCTTCAGGCTATCC+CGG | 0.484027 | 3_3:-52534023 | None:intergenic |
| TTCTGAAGTTGCAATAGAGC+AGG | 0.493865 | 3_3:-52532882 | None:intergenic |
| AATTGACATTGAAAGAGAAC+AGG | 0.495415 | 3_3:+52532998 | Msa0457530:CDS |
| GATCATAGGACACATGTCTT+GGG | 0.498896 | 3_3:-52534167 | None:intergenic |
| CAAGTGACATTGTTGATGTT+GGG | 0.499712 | 3_3:+52534076 | Msa0457530:CDS |
| TTATGCAGACATATGGAAAT+GGG | 0.508592 | 3_3:+52532654 | Msa0457530:intron |
| GTGTCACAGATTTGGAAGAA+AGG | 0.513362 | 3_3:+52532907 | Msa0457530:CDS |
| AAGGAGGATGCTTTCAAATG+AGG | 0.531201 | 3_3:+52532141 | Msa0457530:CDS |
| TCAGGGCATTAGGCCATCCA+AGG | 0.533527 | 3_3:+52532111 | Msa0457530:intron |
| ACAAGTGACATTGTTGATGT+TGG | 0.533887 | 3_3:+52534075 | Msa0457530:CDS |
| GGATTTACAAGTACAATGAA+AGG | 0.553386 | 3_3:-52534219 | None:intergenic |
| CTACTATTTCAATATATGAA+AGG | 0.564225 | 3_3:+52532681 | Msa0457530:CDS |
| GATTTACAAGTACAATGAAA+GGG | 0.577355 | 3_3:-52534218 | None:intergenic |
| GCTCTATTGCAACTTCAGAA+AGG | 0.581652 | 3_3:+52532885 | Msa0457530:CDS |
| CAGGGCATTAGGCCATCCAA+GGG | 0.597884 | 3_3:+52532112 | Msa0457530:intron |
| GGCCATCCAAGGGATAAAGA+AGG | 0.603064 | 3_3:+52532122 | Msa0457530:CDS |
| ATTGAAAGAGAACAGGAATG+TGG | 0.606235 | 3_3:+52533005 | Msa0457530:CDS |
| TTGTGTCTGTGTAAATCCAA+AGG | 0.614945 | 3_3:-52534056 | None:intergenic |
| TCAGGCTATCCCGGCAAAAG+GGG | 0.616325 | 3_3:-52534014 | None:intergenic |
| AACCAAGAGCACCAGCAAGT+CGG | 0.642149 | 3_3:-52532220 | None:intergenic |
| CATCCAAGGGATAAAGAAGG+AGG | 0.651855 | 3_3:+52532125 | Msa0457530:CDS |
| AGCCTGAAGAGAGTAAACTC+TGG | 0.667268 | 3_3:+52534030 | Msa0457530:CDS |
| GAGGCTATCATACAGTCCAG+TGG | 0.705446 | 3_3:+52532160 | Msa0457530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAATAAATTTTTAATCT+GGG | - | chr3_3:52531417-52531436 | None:intergenic | 10.0% |
| !!! | AAAAGAATAAATTTTTAATC+TGG | - | chr3_3:52531418-52531437 | None:intergenic | 10.0% |
| !!! | ATAAAACTAAGTTTAATTTT+TGG | + | chr3_3:52533177-52533196 | Msa0457530:intron | 10.0% |
| !!! | AATTTCAGTGAAAATATTTT+TGG | + | chr3_3:52531220-52531239 | Msa0457530:five_prime_UTR | 15.0% |
| !!! | ATTTCAGTGAAAATATTTTT+GGG | + | chr3_3:52531221-52531240 | Msa0457530:five_prime_UTR | 15.0% |
| !!! | TTTTTTTGTGAAGAATTTTT+GGG | + | chr3_3:52531434-52531453 | Msa0457530:intron | 15.0% |
| !!! | ACATTTTAGTGTTTTTTTTT+TGG | + | chr3_3:52531988-52532007 | Msa0457530:intron | 15.0% |
| !!! | CCAATAATTTTTAAAAGTAA+GGG | - | chr3_3:52532426-52532445 | None:intergenic | 15.0% |
| !!! | CCTTACTTTTAAAAATTATT+GGG | + | chr3_3:52532424-52532443 | Msa0457530:intron | 15.0% |
| !!! | ACAATTTTATTGTAAGTTTA+AGG | + | chr3_3:52532718-52532737 | Msa0457530:intron | 15.0% |
| !! | AAAATGTCAAATATAAAACT+TGG | - | chr3_3:52533212-52533231 | None:intergenic | 15.0% |
| !! | TCGAAAAAATATAAAATCAA+TGG | - | chr3_3:52533545-52533564 | None:intergenic | 15.0% |
| !!! | TGAAAATATTTTTGGGATAT+GGG | + | chr3_3:52531228-52531247 | Msa0457530:exon | 20.0% |
| !!! | TCTTCAAATTCACTTTTTTT+AGG | + | chr3_3:52531327-52531346 | Msa0457530:intron | 20.0% |
| !!! | CTTCAAATTCACTTTTTTTA+GGG | + | chr3_3:52531328-52531347 | Msa0457530:intron | 20.0% |
| !!! | CTTTTTTTGTGAAGAATTTT+TGG | + | chr3_3:52531433-52531452 | Msa0457530:intron | 20.0% |
| !!! | TCATCAACATTGATTAAAAA+AGG | - | chr3_3:52531704-52531723 | None:intergenic | 20.0% |
| !! | AAAGAATTTGTATGATACTT+GGG | + | chr3_3:52531830-52531849 | Msa0457530:intron | 20.0% |
| !! | CTTAAGTATGTATATTGTTT+AGG | - | chr3_3:52532277-52532296 | None:intergenic | 20.0% |
| !!! | CCCTTACTTTTAAAAATTAT+TGG | + | chr3_3:52532423-52532442 | Msa0457530:intron | 20.0% |
| !!! | CCCAATAATTTTTAAAAGTA+AGG | - | chr3_3:52532427-52532446 | None:intergenic | 20.0% |
| !! | CTACTATTTCAATATATGAA+AGG | + | chr3_3:52532681-52532700 | Msa0457530:CDS | 20.0% |
| !! | ATAAGAATGTAATGTTATCT+TGG | + | chr3_3:52532747-52532766 | Msa0457530:intron | 20.0% |
| !! | TTATCATCAAGAACATAAAA+TGG | - | chr3_3:52532812-52532831 | None:intergenic | 20.0% |
| !!! | CAATCAACTTTTTTAAAAGT+AGG | + | chr3_3:52533327-52533346 | Msa0457530:intron | 20.0% |
| !!! | TTCTATTTTCTTCAACAAAT+TGG | - | chr3_3:52533662-52533681 | None:intergenic | 20.0% |
| !! | AGAATAAACTAGTAACTAAT+TGG | - | chr3_3:52533930-52533949 | None:intergenic | 20.0% |
| !! | AGTTAAATTATTGTCCAAAA+TGG | - | chr3_3:52534243-52534262 | None:intergenic | 20.0% |
| !!! | GTGAAAATATTTTTGGGATA+TGG | + | chr3_3:52531227-52531246 | Msa0457530:exon | 25.0% |
| ! | CAAGTATCATACAAATTCTT+TGG | - | chr3_3:52531831-52531850 | None:intergenic | 25.0% |
| ! | CAAAGAATTTGTATGATACT+TGG | + | chr3_3:52531829-52531848 | Msa0457530:intron | 25.0% |
| !!! | AATTTGCATGTTTGTTGTAT+TGG | + | chr3_3:52531896-52531915 | Msa0457530:intron | 25.0% |
| ! | GTGAAAAACATCTCAAAATT+TGG | - | chr3_3:52532085-52532104 | None:intergenic | 25.0% |
| !!! | ATGTTTTTCACTGTTTTTCA+GGG | + | chr3_3:52532094-52532113 | Msa0457530:intron | 25.0% |
| !!! | TTTAAAAGTAAGGGTTTTAG+TGG | - | chr3_3:52532417-52532436 | None:intergenic | 25.0% |
| !!! | ACTTTTAAAAATTATTGGGC+CGG | + | chr3_3:52532428-52532447 | Msa0457530:intron | 25.0% |
| !!! | AATGACTATTTTTTAACGAG+TGG | + | chr3_3:52532543-52532562 | Msa0457530:intron | 25.0% |
| ! | ATATAACTGGAAACAATCTA+AGG | - | chr3_3:52533136-52533155 | None:intergenic | 25.0% |
| ! | TATGATCAAGTGTATATAAC+TGG | - | chr3_3:52533149-52533168 | None:intergenic | 25.0% |
| ! | TTGATATCAAAGATGTAATG+TGG | - | chr3_3:52533411-52533430 | None:intergenic | 25.0% |
| ! | ACATCTTTGATATCAATGAA+AGG | + | chr3_3:52533415-52533434 | Msa0457530:intron | 25.0% |
| ! | TAACAATCTTTGAATTCATG+AGG | - | chr3_3:52533491-52533510 | None:intergenic | 25.0% |
| ! | TGAATTCAAAGATTGTTATC+CGG | + | chr3_3:52533493-52533512 | Msa0457530:intron | 25.0% |
| !! | TTTTATAAAGTAAAAGCAGC+CGG | - | chr3_3:52533515-52533534 | None:intergenic | 25.0% |
| ! | ATTGGAAACAAGATAACAAT+AGG | - | chr3_3:52533644-52533663 | None:intergenic | 25.0% |
| !! | GCAACAATTTTGTAATTACA+AGG | + | chr3_3:52533830-52533849 | Msa0457530:intron | 25.0% |
| ! | AATGCAAGTAAACAAGTATT+GGG | - | chr3_3:52533877-52533896 | None:intergenic | 25.0% |
| ! | TAATGCAAGTAAACAAGTAT+TGG | - | chr3_3:52533878-52533897 | None:intergenic | 25.0% |
| ! | GTATAAGATACACTATATCA+AGG | - | chr3_3:52533908-52533927 | None:intergenic | 25.0% |
| ! | TTACCTAAAAAATGGATCAT+AGG | - | chr3_3:52534184-52534203 | None:intergenic | 25.0% |
| !!! | ATGATCCATTTTTTAGGTAA+AGG | + | chr3_3:52534184-52534203 | Msa0457530:CDS | 25.0% |
| ! | AACAACCTTTACCTAAAAAA+TGG | - | chr3_3:52534192-52534211 | None:intergenic | 25.0% |
| ! | GATTTACAAGTACAATGAAA+GGG | - | chr3_3:52534221-52534240 | None:intergenic | 25.0% |
| !! | TTGTACTTGTAAATCCATTT+TGG | + | chr3_3:52534226-52534245 | Msa0457530:three_prime_UTR | 25.0% |
| CATAGATTTCAACACAAAAG+TGG | - | chr3_3:52531518-52531537 | None:intergenic | 30.0% | |
| ! | ATGTCTTCGATCAAAAGTAT+CGG | - | chr3_3:52531546-52531565 | None:intergenic | 30.0% |
| TTGAACATAATCACATGTGT+CGG | - | chr3_3:52531583-52531602 | None:intergenic | 30.0% | |
| TGAAGTTTAGTGAGAATTTG+AGG | + | chr3_3:52531766-52531785 | Msa0457530:intron | 30.0% | |
| ! | AATGAAGCTGTTTGATAATC+TGG | + | chr3_3:52531804-52531823 | Msa0457530:intron | 30.0% |
| ! | ATGAAGCTGTTTGATAATCT+GGG | + | chr3_3:52531805-52531824 | Msa0457530:intron | 30.0% |
| TAACTAACTCAAACACATCA+AGG | - | chr3_3:52532057-52532076 | None:intergenic | 30.0% | |
| !! | GATGTTTTTCACTGTTTTTC+AGG | + | chr3_3:52532093-52532112 | Msa0457530:intron | 30.0% |
| ! | TTTTTCTCTCTCTTGTTCAA+TGG | + | chr3_3:52532189-52532208 | Msa0457530:CDS | 30.0% |
| GCTCAGAATTCTAATTTATG+TGG | + | chr3_3:52532244-52532263 | Msa0457530:CDS | 30.0% | |
| TCAACATTTATGCAGACATA+TGG | + | chr3_3:52532647-52532666 | Msa0457530:intron | 30.0% | |
| TTTATGCAGACATATGGAAA+TGG | + | chr3_3:52532653-52532672 | Msa0457530:intron | 30.0% | |
| TTATGCAGACATATGGAAAT+GGG | + | chr3_3:52532654-52532673 | Msa0457530:intron | 30.0% | |
| AATTGACATTGAAAGAGAAC+AGG | + | chr3_3:52532998-52533017 | Msa0457530:CDS | 30.0% | |
| TGTAACACTTGAAACACATT+TGG | - | chr3_3:52533079-52533098 | None:intergenic | 30.0% | |
| ! | TGACATTTTGTCAATCCTTT+TGG | + | chr3_3:52533223-52533242 | Msa0457530:intron | 30.0% |
| TTACAACTCTAGTTACCAAA+AGG | - | chr3_3:52533241-52533260 | None:intergenic | 30.0% | |
| GCAGAATGTTAAAAGCAAAA+TGG | - | chr3_3:52533269-52533288 | None:intergenic | 30.0% | |
| CAATAAGATCTATAGAGGAA+AGG | - | chr3_3:52533355-52533374 | None:intergenic | 30.0% | |
| GTGATCAATAAGATCTATAG+AGG | - | chr3_3:52533360-52533379 | None:intergenic | 30.0% | |
| GATCACTTAGATGATATCAA+TGG | + | chr3_3:52533374-52533393 | Msa0457530:intron | 30.0% | |
| TTTGACTAAAAATGTGAGAC+AGG | - | chr3_3:52533452-52533471 | None:intergenic | 30.0% | |
| AGTCAAAAAAGTTGAGATTG+AGG | + | chr3_3:52533465-52533484 | Msa0457530:intron | 30.0% | |
| ! | CTTCATATTGAAAGCGTATT+TGG | - | chr3_3:52533758-52533777 | None:intergenic | 30.0% |
| !!! | ACAAAGCTGTTTTTTGATTC+AGG | + | chr3_3:52533971-52533990 | Msa0457530:intron | 30.0% |
| !!! | TTTTTTGATTCAGGTGTCTT+AGG | + | chr3_3:52533980-52533999 | Msa0457530:intron | 30.0% |
| CAGAATCTTACAATTCTCTT+TGG | - | chr3_3:52534109-52534128 | None:intergenic | 30.0% | |
| !!! | TGTCCTATGATCCATTTTTT+AGG | + | chr3_3:52534178-52534197 | Msa0457530:CDS | 30.0% |
| GGATTTACAAGTACAATGAA+AGG | - | chr3_3:52534222-52534241 | None:intergenic | 30.0% | |
| GTTTGTGCTTTGTAGATTGA+AGG | + | chr3_3:52531660-52531679 | Msa0457530:intron | 35.0% | |
| !! | TTGCATGTTTGTTGTATTGG+TGG | + | chr3_3:52531899-52531918 | Msa0457530:intron | 35.0% |
| !! | TGCATGTTTGTTGTATTGGT+GGG | + | chr3_3:52531900-52531919 | Msa0457530:intron | 35.0% |
| AACAAGAGAGAGAAAAAGTG+GGG | - | chr3_3:52532186-52532205 | None:intergenic | 35.0% | |
| GAACAAGAGAGAGAAAAAGT+GGG | - | chr3_3:52532187-52532206 | None:intergenic | 35.0% | |
| TGAACAAGAGAGAGAAAAAG+TGG | - | chr3_3:52532188-52532207 | None:intergenic | 35.0% | |
| !!! | AATTGCTTTTGTTGTTGTGC+AGG | + | chr3_3:52532373-52532392 | Msa0457530:intron | 35.0% |
| !!! | ATTGCTTTTGTTGTTGTGCA+GGG | + | chr3_3:52532374-52532393 | Msa0457530:intron | 35.0% |
| AGTACACAAAACGGAACTTA+TGG | - | chr3_3:52532583-52532602 | None:intergenic | 35.0% | |
| GACAATGCAAGTACACAAAA+CGG | - | chr3_3:52532592-52532611 | None:intergenic | 35.0% | |
| ! | TTTTGCCTATTGCTCATTCA+GGG | + | chr3_3:52532774-52532793 | Msa0457530:intron | 35.0% |
| ATTGAAAGAGAACAGGAATG+TGG | + | chr3_3:52533005-52533024 | Msa0457530:CDS | 35.0% | |
| AACACTTGAAACACATTTGG+TGG | - | chr3_3:52533076-52533095 | None:intergenic | 35.0% | |
| ! | GTTTCAAGTGTTACAGAGAA+TGG | + | chr3_3:52533084-52533103 | Msa0457530:CDS | 35.0% |
| ACTGGAAACAATCTAAGGAT+GGG | - | chr3_3:52533131-52533150 | None:intergenic | 35.0% | |
| AACTGGAAACAATCTAAGGA+TGG | - | chr3_3:52533132-52533151 | None:intergenic | 35.0% | |
| AAATGTGAGACAGGAAATTC+AGG | - | chr3_3:52533443-52533462 | None:intergenic | 35.0% | |
| CCAATCTCTAATGTGTAAAG+AGG | - | chr3_3:52533577-52533596 | None:intergenic | 35.0% | |
| CCTCTTTACACATTAGAGAT+TGG | + | chr3_3:52533574-52533593 | Msa0457530:intron | 35.0% | |
| ACGCTTTCAATATGAAGTGT+TGG | + | chr3_3:52533761-52533780 | Msa0457530:intron | 35.0% | |
| !! | TAAACAAGTATTGGGTAGGT+GGG | - | chr3_3:52533869-52533888 | None:intergenic | 35.0% |
| !! | CAAGTAAACAAGTATTGGGT+AGG | - | chr3_3:52533873-52533892 | None:intergenic | 35.0% |
| TTGTGTCTGTGTAAATCCAA+AGG | - | chr3_3:52534059-52534078 | None:intergenic | 35.0% | |
| ACAAGTGACATTGTTGATGT+TGG | + | chr3_3:52534075-52534094 | Msa0457530:CDS | 35.0% | |
| CAAGTGACATTGTTGATGTT+GGG | + | chr3_3:52534076-52534095 | Msa0457530:CDS | 35.0% | |
| ! | GTTTAGTGAGAATTTGAGGC+TGG | + | chr3_3:52531770-52531789 | Msa0457530:intron | 40.0% |
| !!! | TCACTGTTTTTCAGGGCATT+AGG | + | chr3_3:52532101-52532120 | Msa0457530:intron | 40.0% |
| AAGGAGGATGCTTTCAAATG+AGG | + | chr3_3:52532141-52532160 | Msa0457530:CDS | 40.0% | |
| TTGTCAAATAGTAGCTGCAG+CGG | + | chr3_3:52532486-52532505 | Msa0457530:intron | 40.0% | |
| AACGGAACTTATGGAAGAAC+TGG | - | chr3_3:52532574-52532593 | None:intergenic | 40.0% | |
| ! | GTTTTGCCTATTGCTCATTC+AGG | + | chr3_3:52532773-52532792 | Msa0457530:intron | 40.0% |
| !! | TTCTGAAGTTGCAATAGAGC+AGG | - | chr3_3:52532885-52532904 | None:intergenic | 40.0% |
| GCTCTATTGCAACTTCAGAA+AGG | + | chr3_3:52532885-52532904 | Msa0457530:CDS | 40.0% | |
| !! | TCAGAAAGGTGTCACAGATT+TGG | + | chr3_3:52532899-52532918 | Msa0457530:CDS | 40.0% |
| GTGTCACAGATTTGGAAGAA+AGG | + | chr3_3:52532907-52532926 | Msa0457530:CDS | 40.0% | |
| ! | CACATTTGGTGGCAACAATT+AGG | - | chr3_3:52533065-52533084 | None:intergenic | 40.0% |
| ACAATCTAAGGATGGGAAAG+TGG | - | chr3_3:52533124-52533143 | None:intergenic | 40.0% | |
| !! | AAACAAGTATTGGGTAGGTG+GGG | - | chr3_3:52533868-52533887 | None:intergenic | 40.0% |
| !! | GTAAACAAGTATTGGGTAGG+TGG | - | chr3_3:52533870-52533889 | None:intergenic | 40.0% |
| ! | CTTGGGTCTGGAATAATAAG+AGG | - | chr3_3:52534153-52534172 | None:intergenic | 40.0% |
| GATCATAGGACACATGTCTT+GGG | - | chr3_3:52534170-52534189 | None:intergenic | 40.0% | |
| GACACACAAACTCGAGACAT+CGG | - | chr3_3:52531637-52531656 | None:intergenic | 45.0% | |
| CTCCTTCTTTATCCCTTGGA+TGG | - | chr3_3:52532127-52532146 | None:intergenic | 45.0% | |
| CATCCAAGGGATAAAGAAGG+AGG | + | chr3_3:52532125-52532144 | Msa0457530:CDS | 45.0% | |
| CATCCTCCTTCTTTATCCCT+TGG | - | chr3_3:52532131-52532150 | None:intergenic | 45.0% | |
| !! | GTTTTAGTGGCCTTACCCTT+AGG | - | chr3_3:52532404-52532423 | None:intergenic | 45.0% |
| AGACACCCTGAATGAGCAAT+AGG | - | chr3_3:52532782-52532801 | None:intergenic | 45.0% | |
| ! | TTGCTCATTCAGGGTGTCTT+TGG | + | chr3_3:52532783-52532802 | Msa0457530:intron | 45.0% |
| ! | ACAGGAATGTGGAGTTTGCT+TGG | + | chr3_3:52533016-52533035 | Msa0457530:CDS | 45.0% |
| !! | TGACATGACGGATATGTGTG+TGG | - | chr3_3:52533699-52533718 | None:intergenic | 45.0% |
| TCCGTCATGTCATGTCATGT+CGG | + | chr3_3:52533707-52533726 | Msa0457530:intron | 45.0% | |
| TCCGACATGACATGACATGA+CGG | - | chr3_3:52533711-52533730 | None:intergenic | 45.0% | |
| TCATGTCATGTCATGTCGGA+TGG | + | chr3_3:52533711-52533730 | Msa0457530:intron | 45.0% | |
| TTACTCTCTTCAGGCTATCC+CGG | - | chr3_3:52534026-52534045 | None:intergenic | 45.0% | |
| AGCCTGAAGAGAGTAAACTC+TGG | + | chr3_3:52534030-52534049 | Msa0457530:CDS | 45.0% | |
| GGATCATAGGACACATGTCT+TGG | - | chr3_3:52534171-52534190 | None:intergenic | 45.0% | |
| GGCCATCCAAGGGATAAAGA+AGG | + | chr3_3:52532122-52532141 | Msa0457530:CDS | 50.0% | |
| GAGGCTATCATACAGTCCAG+TGG | + | chr3_3:52532160-52532179 | Msa0457530:CDS | 50.0% | |
| !! | AACCAAGAGCACCAGCAAGT+CGG | - | chr3_3:52532223-52532242 | None:intergenic | 50.0% |
| !!! | CTTTTGTTGTTGTGCAGGGC+CGG | + | chr3_3:52532378-52532397 | Msa0457530:intron | 50.0% |
| AAATAGCGCACCGCACAACA+GGG | - | chr3_3:52532454-52532473 | None:intergenic | 50.0% | |
| TAAATAGCGCACCGCACAAC+AGG | - | chr3_3:52532455-52532474 | None:intergenic | 50.0% | |
| GCTATGGCACTACAGTGTAG+CGG | + | chr3_3:52532510-52532529 | Msa0457530:intron | 50.0% | |
| ! | CTCAATCTTGCCCCTTTTGC+CGG | + | chr3_3:52534004-52534023 | Msa0457530:CDS | 50.0% |
| ! | TCAATCTTGCCCCTTTTGCC+GGG | + | chr3_3:52534005-52534024 | Msa0457530:CDS | 50.0% |
| TTCAGGCTATCCCGGCAAAA+GGG | - | chr3_3:52534018-52534037 | None:intergenic | 50.0% | |
| CGCCAGAGTTTACTCTCTTC+AGG | - | chr3_3:52534035-52534054 | None:intergenic | 50.0% | |
| GAGTAAACTCTGGCGACCTT+TGG | + | chr3_3:52534040-52534059 | Msa0457530:CDS | 50.0% | |
| TAGGACACATGTCTTGGGTC+TGG | - | chr3_3:52534165-52534184 | None:intergenic | 50.0% | |
| ! | TCAGGGCATTAGGCCATCCA+AGG | + | chr3_3:52532111-52532130 | Msa0457530:intron | 55.0% |
| ! | CAGGGCATTAGGCCATCCAA+GGG | + | chr3_3:52532112-52532131 | Msa0457530:intron | 55.0% |
| GAGAGAAAAAGTGGGGCCAC+TGG | - | chr3_3:52532179-52532198 | None:intergenic | 55.0% | |
| !! | TGGACTGACTACCGACTTGC+TGG | + | chr3_3:52532209-52532228 | Msa0457530:CDS | 55.0% |
| !! | TACCGACTTGCTGGTGCTCT+TGG | + | chr3_3:52532218-52532237 | Msa0457530:CDS | 55.0% |
| ! | TAGTGGCCTTACCCTTAGGC+CGG | - | chr3_3:52532400-52532419 | None:intergenic | 55.0% |
| ! | TAGTAGCTGCAGCGGTGCTA+TGG | + | chr3_3:52532494-52532513 | Msa0457530:intron | 55.0% |
| TCAGGCTATCCCGGCAAAAG+GGG | - | chr3_3:52534017-52534036 | None:intergenic | 55.0% | |
| CTTCAGGCTATCCCGGCAAA+AGG | - | chr3_3:52534019-52534038 | None:intergenic | 55.0% | |
| TGTTGTGCAGGGCCGGCCTA+AGG | + | chr3_3:52532385-52532404 | Msa0457530:intron | 65.0% | |
| GTTGTGCAGGGCCGGCCTAA+GGG | + | chr3_3:52532386-52532405 | Msa0457530:intron | 65.0% | |
| ATTGGGCCGGCCCTGTTGTG+CGG | + | chr3_3:52532441-52532460 | Msa0457530:intron | 65.0% | |
| GCAGGGCCGGCCTAAGGGTA+AGG | + | chr3_3:52532391-52532410 | Msa0457530:intron | 70.0% | |
| AGCGCACCGCACAACAGGGC+CGG | - | chr3_3:52532450-52532469 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 52531198 | 52534285 | 52531198 | ID=Msa0457530;Name=Msa0457530 |
| chr3_3 | mRNA | 52531198 | 52534285 | 52531198 | ID=Msa0457530-mRNA-1;Parent=Msa0457530;Name=Msa0457530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=48|1|1|1|1|1|5|82|243 |
| chr3_3 | exon | 52531198 | 52531313 | 52531198 | ID=Msa0457530-mRNA-1:exon:10104;Parent=Msa0457530-mRNA-1 |
| chr3_3 | exon | 52532115 | 52532265 | 52532115 | ID=Msa0457530-mRNA-1:exon:10105;Parent=Msa0457530-mRNA-1 |
| chr3_3 | exon | 52532662 | 52532728 | 52532662 | ID=Msa0457530-mRNA-1:exon:10106;Parent=Msa0457530-mRNA-1 |
| chr3_3 | exon | 52532871 | 52533105 | 52532871 | ID=Msa0457530-mRNA-1:exon:10107;Parent=Msa0457530-mRNA-1 |
| chr3_3 | exon | 52533993 | 52534285 | 52533993 | ID=Msa0457530-mRNA-1:exon:10108;Parent=Msa0457530-mRNA-1 |
| chr3_3 | five_prime_UTR | 52531198 | 52531245 | 52531198 | ID=Msa0457530-mRNA-1:five_prime_utr;Parent=Msa0457530-mRNA-1 |
| chr3_3 | CDS | 52531246 | 52531313 | 52531246 | ID=Msa0457530-mRNA-1:cds;Parent=Msa0457530-mRNA-1 |
| chr3_3 | CDS | 52532115 | 52532265 | 52532115 | ID=Msa0457530-mRNA-1:cds;Parent=Msa0457530-mRNA-1 |
| chr3_3 | CDS | 52532662 | 52532728 | 52532662 | ID=Msa0457530-mRNA-1:cds;Parent=Msa0457530-mRNA-1 |
| chr3_3 | CDS | 52532871 | 52533105 | 52532871 | ID=Msa0457530-mRNA-1:cds;Parent=Msa0457530-mRNA-1 |
| chr3_3 | CDS | 52533993 | 52534203 | 52533993 | ID=Msa0457530-mRNA-1:cds;Parent=Msa0457530-mRNA-1 |
| chr3_3 | three_prime_UTR | 52534204 | 52534285 | 52534204 | ID=Msa0457530-mRNA-1:three_prime_utr;Parent=Msa0457530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
