Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412820 | XP_013460223.2 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 1.51e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412820 | sp|Q9M022|AIRP2_ARATH | 62.963 | 243 | 89 | 1 | 1 | 243 | 1 | 242 | 2.56e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412820 | A0A396ISD6 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 7.22e-178 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0192890 | Msa0412820 | 0.809257 | 2.068877e-50 | -8.615850e-47 |
| Msa0225420 | Msa0412820 | 0.815622 | 8.410677e-52 | -8.615850e-47 |
| Msa0412820 | Msa0457530 | 0.883770 | 3.385554e-71 | -8.615850e-47 |
| Msa0412820 | Msa0504430 | 0.927541 | 1.017600e-91 | -8.615850e-47 |
| Msa0412820 | Msa0783680 | 0.848963 | 4.384673e-60 | -8.615850e-47 |
| Msa0412820 | Msa1258600 | 0.817058 | 4.014108e-52 | -8.615850e-47 |
| Msa0412820 | Msa1298440 | 0.806689 | 7.282947e-50 | -8.615850e-47 |
| Msa0412820 | Msa1335090 | 0.810239 | 1.272169e-50 | -8.615850e-47 |
| Msa0412820 | Msa1400940 | 0.810007 | 1.427952e-50 | -8.615850e-47 |
| Msa0412820 | Msa1422380 | 0.830649 | 2.607909e-55 | -8.615850e-47 |
| Msa0412820 | Msa1441220 | -0.807180 | 5.733579e-50 | -8.615850e-47 |
| Msa0412820 | Msa1459990 | 0.828207 | 1.021932e-54 | -8.615850e-47 |
| Msa0297350 | Msa0412820 | -0.800882 | 1.170075e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412820 | MtrunA17_Chr3g0104651 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 0.0 | 498 |
| Msa0412820 | MtrunA17_Chr4g0047521 | 63.374 | 243 | 88 | 1 | 1 | 243 | 7 | 248 | 1.09e-110 | 318 |
| Msa0412820 | MtrunA17_Chr2g0281861 | 63.866 | 238 | 86 | 0 | 6 | 243 | 14 | 251 | 4.00e-109 | 314 |
| Msa0412820 | MtrunA17_Chr4g0006201 | 61.062 | 226 | 88 | 0 | 6 | 231 | 10 | 235 | 1.93e-103 | 300 |
| Msa0412820 | MtrunA17_Chr7g0242261 | 61.333 | 225 | 86 | 1 | 6 | 229 | 25 | 249 | 1.75e-99 | 290 |
| Msa0412820 | MtrunA17_Chr8g0376861 | 45.417 | 240 | 124 | 3 | 6 | 238 | 10 | 249 | 8.72e-65 | 202 |
| Msa0412820 | MtrunA17_Chr3g0123161 | 44.215 | 242 | 126 | 3 | 6 | 238 | 13 | 254 | 1.70e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412820 | AT3G47160.1 | 63.362 | 232 | 85 | 0 | 1 | 232 | 1 | 232 | 3.52e-111 | 320 |
| Msa0412820 | AT5G01520.1 | 62.963 | 243 | 89 | 1 | 1 | 243 | 1 | 242 | 2.60e-108 | 312 |
| Msa0412820 | AT3G47160.2 | 60.246 | 244 | 85 | 1 | 1 | 232 | 1 | 244 | 1.71e-107 | 311 |
| Msa0412820 | AT5G58787.1 | 63.291 | 237 | 84 | 1 | 1 | 237 | 1 | 234 | 2.27e-103 | 300 |
| Msa0412820 | AT3G47160.3 | 63.590 | 195 | 71 | 0 | 38 | 232 | 1 | 195 | 9.09e-93 | 271 |
| Msa0412820 | AT5G58787.2 | 59.494 | 237 | 78 | 2 | 1 | 237 | 1 | 219 | 1.09e-91 | 270 |
| Msa0412820 | AT5G58787.3 | 57.604 | 217 | 74 | 2 | 21 | 237 | 2 | 200 | 1.63e-79 | 238 |
| Msa0412820 | AT5G01520.2 | 63.473 | 167 | 61 | 0 | 6 | 172 | 5 | 171 | 1.02e-74 | 224 |
| Msa0412820 | AT1G24440.1 | 44.309 | 246 | 133 | 3 | 1 | 242 | 5 | 250 | 2.51e-65 | 203 |
| Msa0412820 | AT1G13195.1 | 43.096 | 239 | 129 | 3 | 6 | 238 | 16 | 253 | 5.20e-63 | 198 |
| Msa0412820 | AT1G24440.2 | 43.519 | 216 | 118 | 3 | 31 | 242 | 3 | 218 | 3.09e-55 | 176 |
| Msa0412820 | AT1G13195.2 | 42.105 | 209 | 114 | 3 | 36 | 238 | 8 | 215 | 6.02e-53 | 171 |
Find 47 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTAAATTATTGTCCAAAA+TGG | 0.208869 | 3_2:+56634313 | None:intergenic |
| CAGAATCTTACAATTCTCTT+TGG | 0.221212 | 3_2:+56634447 | None:intergenic |
| TTGTACTTGTAAATCCATTT+TGG | 0.225211 | 3_2:-56634327 | Msa0412820:three_prime_UTR |
| TCAGAAAGGTGTCACAGATT+TGG | 0.314514 | 3_2:-56635632 | Msa0412820:CDS |
| CACATTTGGTGGCAACAATT+AGG | 0.316903 | 3_2:+56635469 | None:intergenic |
| CACCAGAGTTTACTCTCTTC+AGG | 0.343822 | 3_2:+56634521 | None:intergenic |
| TGGACTGATTACCGACTTGC+TGG | 0.372757 | 3_2:-56636352 | Msa0412820:CDS |
| TCCACATTTATGCAGACATA+TGG | 0.376246 | 3_2:-56635891 | Msa0412820:intron |
| TACCGACTTGCTGGTGCTCT+TGG | 0.377091 | 3_2:-56636343 | Msa0412820:CDS |
| CATCCTCCTTCTTTATCCCT+TGG | 0.389896 | 3_2:+56636433 | None:intergenic |
| TTTATGCAGACATATGGAAA+TGG | 0.398981 | 3_2:-56635885 | Msa0412820:intron |
| CTCCTTCTTTATCCCTTGGA+TGG | 0.400445 | 3_2:+56636437 | None:intergenic |
| TGTAACACTTGAAACACATT+TGG | 0.405912 | 3_2:+56635455 | None:intergenic |
| GAGTAAACTCTGGTGACCTT+TGG | 0.424393 | 3_2:-56634513 | Msa0412820:CDS |
| ACAGGAATGTGGAGTTTGCT+TGG | 0.445145 | 3_2:-56635515 | Msa0412820:CDS |
| CTTCAGGCTATCCCGGCAAA+AGG | 0.462552 | 3_2:+56634537 | None:intergenic |
| AACACTTGAAACACATTTGG+TGG | 0.465530 | 3_2:+56635458 | None:intergenic |
| TTCAGGCTATCCCGGCAAAA+GGG | 0.465840 | 3_2:+56634538 | None:intergenic |
| TAGGACACATGTCTTGGGTC+TGG | 0.466508 | 3_2:+56634391 | None:intergenic |
| GGATCATAGGACACATGTCT+TGG | 0.474901 | 3_2:+56634385 | None:intergenic |
| CTTGGGTCTGGAATAATAAG+AGG | 0.478210 | 3_2:+56634403 | None:intergenic |
| GTTTCAAGTGTTACAGAGAA+TGG | 0.480502 | 3_2:-56635447 | Msa0412820:intron |
| TTACTCTCTTCAGGCTATCC+CGG | 0.484027 | 3_2:+56634530 | None:intergenic |
| TTCTGAAGTTGCAATAGAGC+AGG | 0.493865 | 3_2:+56635649 | None:intergenic |
| AATTGACATTGAAAGAGAAC+AGG | 0.495415 | 3_2:-56635533 | Msa0412820:CDS |
| GATCATAGGACACATGTCTT+GGG | 0.498896 | 3_2:+56634386 | None:intergenic |
| CAAGTGACATTGTTGATGTT+GGG | 0.499712 | 3_2:-56634477 | Msa0412820:CDS |
| TTATGCAGACATATGGAAAT+GGG | 0.508592 | 3_2:-56635884 | Msa0412820:intron |
| GTGTCACAGATTTGGAAGAA+AGG | 0.513362 | 3_2:-56635624 | Msa0412820:CDS |
| AAGGAGGATGCTTTCAAATG+AGG | 0.531201 | 3_2:-56636420 | Msa0412820:CDS |
| TCAGGGCATTAGGCCATCCA+AGG | 0.533527 | 3_2:-56636450 | Msa0412820:intron |
| ACAAGTGACATTGTTGATGT+TGG | 0.533887 | 3_2:-56634478 | Msa0412820:CDS |
| GCTCAGAATTCTAATCTATG+TGG | 0.548859 | 3_2:-56636317 | Msa0412820:intron |
| GGATTTACAAGTACAATGAA+AGG | 0.553386 | 3_2:+56634334 | None:intergenic |
| CTACTATTTCAATATATGAA+AGG | 0.564225 | 3_2:-56635857 | Msa0412820:CDS |
| GATTTACAAGTACAATGAAA+GGG | 0.577355 | 3_2:+56634335 | None:intergenic |
| GCTCTATTGCAACTTCAGAA+AGG | 0.581652 | 3_2:-56635646 | Msa0412820:CDS |
| TTGTGTCTGTGTAAATCCAA+AGG | 0.597551 | 3_2:+56634497 | None:intergenic |
| CAGGGCATTAGGCCATCCAA+GGG | 0.597884 | 3_2:-56636449 | Msa0412820:CDS |
| GGCCATCCAAGGGATAAAGA+AGG | 0.603064 | 3_2:-56636439 | Msa0412820:CDS |
| ATTGAAAGAGAACAGGAATG+TGG | 0.606235 | 3_2:-56635526 | Msa0412820:CDS |
| GGAATGTGGAGTTTGCTTGG+AGG | 0.613843 | 3_2:-56635512 | Msa0412820:CDS |
| TCAGGCTATCCCGGCAAAAG+GGG | 0.616325 | 3_2:+56634539 | None:intergenic |
| CATCCAAGGGATAAAGAAGG+AGG | 0.651855 | 3_2:-56636436 | Msa0412820:CDS |
| AACCAAGAGCACCAGCAAGT+CGG | 0.654588 | 3_2:+56636341 | None:intergenic |
| AGCCTGAAGAGAGTAAACTC+TGG | 0.666391 | 3_2:-56634523 | Msa0412820:CDS |
| GAGGCTATCATACAGTCCAG+TGG | 0.705446 | 3_2:-56636401 | Msa0412820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGATTAAATTTTTAATCT+GGG | + | chr3_2:56634487-56634506 | None:intergenic | 10.0% |
| !!! | AAAAGATTAAATTTTTAATC+TGG | + | chr3_2:56634488-56634507 | None:intergenic | 10.0% |
| !!! | TTTTAGTGTTTTTTTTTTTT+TGG | - | chr3_2:56635059-56635078 | Msa0412820:intron | 10.0% |
| !!! | ATAAAACTAAGTTTAATTTT+TGG | - | chr3_2:56636291-56636310 | Msa0412820:intron | 10.0% |
| !! | TTGAAAAAATATAAAATCAA+TGG | + | chr3_2:56636659-56636678 | None:intergenic | 10.0% |
| !!! | AATTTCAGTGAAAATATTTT+TGG | - | chr3_2:56634312-56634331 | Msa0412820:three_prime_UTR | 15.0% |
| !!! | ATTTCAGTGAAAATATTTTT+GGG | - | chr3_2:56634313-56634332 | Msa0412820:three_prime_UTR | 15.0% |
| !!! | TTTTTTTGTGAAGAATTTTT+GGG | - | chr3_2:56634504-56634523 | Msa0412820:CDS | 15.0% |
| !!! | AAAAAGTGTTAAATATTGAA+AGG | + | chr3_2:56634939-56634958 | None:intergenic | 15.0% |
| !! | CCAATAATTTATAAAAGTAA+GGG | + | chr3_2:56635521-56635540 | None:intergenic | 15.0% |
| !!! | CCTTACTTTTATAAATTATT+GGG | - | chr3_2:56635519-56635538 | Msa0412820:CDS | 15.0% |
| !!! | ACAATTTTATTGTAAGTTTA+AGG | - | chr3_2:56635812-56635831 | Msa0412820:intron | 15.0% |
| !! | AAAATGTCAAATATAAAACT+TGG | + | chr3_2:56636326-56636345 | None:intergenic | 15.0% |
| !!! | TGAAAATATTTTTGGGATAT+GGG | - | chr3_2:56634320-56634339 | Msa0412820:three_prime_UTR | 20.0% |
| !!! | TCTTCAAATTCACTTTTTTT+AGG | - | chr3_2:56634419-56634438 | Msa0412820:CDS | 20.0% |
| !!! | CTTCAAATTCACTTTTTTTA+GGG | - | chr3_2:56634420-56634439 | Msa0412820:CDS | 20.0% |
| !!! | CTTTTTTTGTGAAGAATTTT+TGG | - | chr3_2:56634503-56634522 | Msa0412820:CDS | 20.0% |
| !!! | TCATCAACATTGATTAAAAA+AGG | + | chr3_2:56634772-56634791 | None:intergenic | 20.0% |
| !! | AAAGAATTTCTATGATACTT+GGG | - | chr3_2:56634898-56634917 | Msa0412820:intron | 20.0% |
| !! | CTTAAGTATGTATATTGTTT+AGG | + | chr3_2:56635348-56635367 | None:intergenic | 20.0% |
| !!! | CCCTTACTTTTATAAATTAT+TGG | - | chr3_2:56635518-56635537 | Msa0412820:CDS | 20.0% |
| !! | CCCAATAATTTATAAAAGTA+AGG | + | chr3_2:56635522-56635541 | None:intergenic | 20.0% |
| !!! | AAATAACTATTTTTTGTGAG+TGG | - | chr3_2:56635637-56635656 | Msa0412820:CDS | 20.0% |
| !! | CTACTATTTCAATATATGAA+AGG | - | chr3_2:56635775-56635794 | Msa0412820:intron | 20.0% |
| !! | TTATCATCAAGAACATAAAA+TGG | + | chr3_2:56635908-56635927 | None:intergenic | 20.0% |
| !! | ATGTTAAAAATATGATCAAG+TGG | + | chr3_2:56636273-56636292 | None:intergenic | 20.0% |
| !!! | CAATCAACTTTTTTAAAAGT+AGG | - | chr3_2:56636441-56636460 | Msa0412820:CDS | 20.0% |
| !!! | TTTTATAAAGTAAAAGCAAC+CGG | + | chr3_2:56636629-56636648 | None:intergenic | 20.0% |
| !! | GTATAAGATACAATATATCA+AGG | + | chr3_2:56636987-56637006 | None:intergenic | 20.0% |
| !! | AGAATAAACTAGTAACTAAT+TGG | + | chr3_2:56637009-56637028 | None:intergenic | 20.0% |
| !! | AGTTAAATTATTGTCCAAAA+TGG | + | chr3_2:56637322-56637341 | None:intergenic | 20.0% |
| !!! | GTGAAAATATTTTTGGGATA+TGG | - | chr3_2:56634319-56634338 | Msa0412820:three_prime_UTR | 25.0% |
| !! | GATTTTTCTTGAAGTTTAGT+TGG | - | chr3_2:56634825-56634844 | Msa0412820:intron | 25.0% |
| ! | CAAGTATCATAGAAATTCTT+TGG | + | chr3_2:56634899-56634918 | None:intergenic | 25.0% |
| ! | CAAAGAATTTCTATGATACT+TGG | - | chr3_2:56634897-56634916 | Msa0412820:intron | 25.0% |
| !!! | AATTTGCATGTTTGTTGTAT+TGG | - | chr3_2:56634964-56634983 | Msa0412820:intron | 25.0% |
| ! | GTGAAAAACATCTCAAAATT+TGG | + | chr3_2:56635156-56635175 | None:intergenic | 25.0% |
| !!! | ATGTTTTTCACTGTTTTTCA+GGG | - | chr3_2:56635165-56635184 | Msa0412820:intron | 25.0% |
| !!! | TATAAAAGTAAGGGTTTTAG+TGG | + | chr3_2:56635512-56635531 | None:intergenic | 25.0% |
| !! | ACTTTTATAAATTATTGGGC+CGG | - | chr3_2:56635523-56635542 | Msa0412820:CDS | 25.0% |
| ! | AGTACACAAAATGGAAATTA+TGG | + | chr3_2:56635677-56635696 | None:intergenic | 25.0% |
| !! | TATGCCTATTTTGTTCATTT+AGG | - | chr3_2:56635869-56635888 | Msa0412820:CDS | 25.0% |
| !! | ATGCCTATTTTGTTCATTTA+GGG | - | chr3_2:56635870-56635889 | Msa0412820:CDS | 25.0% |
| ! | ATATAACTGGAAACAATCTA+AGG | + | chr3_2:56636250-56636269 | None:intergenic | 25.0% |
| ! | TTGATATCAAAGATGTAATG+TGG | + | chr3_2:56636525-56636544 | None:intergenic | 25.0% |
| ! | ACATCTTTGATATCAATGAA+AGG | - | chr3_2:56636529-56636548 | Msa0412820:intron | 25.0% |
| ! | TAACAATCTTTGAATTCATG+AGG | + | chr3_2:56636605-56636624 | None:intergenic | 25.0% |
| ! | TGAATTCAAAGATTGTTATC+CGG | - | chr3_2:56636607-56636626 | Msa0412820:intron | 25.0% |
| ! | ATTGGAAACAAGATAACAAT+AGG | + | chr3_2:56636758-56636777 | None:intergenic | 25.0% |
| !! | TTCTGTTTTCTTCAACAAAT+TGG | + | chr3_2:56636776-56636795 | None:intergenic | 25.0% |
| !! | GCAACAATTTTGTAATTACA+AGG | - | chr3_2:56636944-56636963 | Msa0412820:intron | 25.0% |
| ! | AGATACAATATATCAAGGTA+TGG | + | chr3_2:56636982-56637001 | None:intergenic | 25.0% |
| ! | TTACCTAAAAAATGGATCAT+AGG | + | chr3_2:56637263-56637282 | None:intergenic | 25.0% |
| !!! | ATGATCCATTTTTTAGGTAA+AGG | - | chr3_2:56637263-56637282 | Msa0412820:CDS | 25.0% |
| ! | AACAACCTTTACCTAAAAAA+TGG | + | chr3_2:56637271-56637290 | None:intergenic | 25.0% |
| ! | GATTTACAAGTACAATGAAA+GGG | + | chr3_2:56637300-56637319 | None:intergenic | 25.0% |
| !! | TTGTACTTGTAAATCCATTT+TGG | - | chr3_2:56637305-56637324 | Msa0412820:exon | 25.0% |
| CATAGATTTCAACACAAAAG+TGG | + | chr3_2:56634588-56634607 | None:intergenic | 30.0% | |
| ! | ATGTCTTCGATCAAAAGTAT+CGG | + | chr3_2:56634616-56634635 | None:intergenic | 30.0% |
| TTGAACATAATCACATGTGT+CGG | + | chr3_2:56634653-56634672 | None:intergenic | 30.0% | |
| TCACAAAATTGATCATGCAA+TGG | + | chr3_2:56634807-56634826 | None:intergenic | 30.0% | |
| AATGAAGCTGTTTGATAAAC+TGG | - | chr3_2:56634872-56634891 | Msa0412820:intron | 30.0% | |
| ATGAAGCTGTTTGATAAACT+GGG | - | chr3_2:56634873-56634892 | Msa0412820:intron | 30.0% | |
| TAACTAACTCAAACACATCA+AGG | + | chr3_2:56635128-56635147 | None:intergenic | 30.0% | |
| !! | GATGTTTTTCACTGTTTTTC+AGG | - | chr3_2:56635164-56635183 | Msa0412820:intron | 30.0% |
| ! | TTTTTCTCTCTCTTGTTCAA+TGG | - | chr3_2:56635260-56635279 | Msa0412820:intron | 30.0% |
| GACAATACAAGTACACAAAA+TGG | + | chr3_2:56635686-56635705 | None:intergenic | 30.0% | |
| TTTATGCAGACATATGGAAA+TGG | - | chr3_2:56635747-56635766 | Msa0412820:intron | 30.0% | |
| TTATGCAGACATATGGAAAT+GGG | - | chr3_2:56635748-56635767 | Msa0412820:intron | 30.0% | |
| ACACCCTAAATGAACAAAAT+AGG | + | chr3_2:56635876-56635895 | None:intergenic | 30.0% | |
| ! | TTGTTCATTTAGGGTGTTTA+TGG | - | chr3_2:56635879-56635898 | Msa0412820:CDS | 30.0% |
| AATTGACATTGAAAGAGAAC+AGG | - | chr3_2:56636099-56636118 | Msa0412820:intron | 30.0% | |
| TGTAACACTTGAAACACATT+TGG | + | chr3_2:56636180-56636199 | None:intergenic | 30.0% | |
| TATGATCAAGTGGATATAAC+TGG | + | chr3_2:56636263-56636282 | None:intergenic | 30.0% | |
| ! | TGACATTTTGTCAATCCTTT+TGG | - | chr3_2:56636337-56636356 | Msa0412820:CDS | 30.0% |
| TTACAACTCTAGTTACCAAA+AGG | + | chr3_2:56636355-56636374 | None:intergenic | 30.0% | |
| GCAGAATGTTAAAAGCAAAA+TGG | + | chr3_2:56636383-56636402 | None:intergenic | 30.0% | |
| CAATAAGATCTATAGAGGAA+AGG | + | chr3_2:56636469-56636488 | None:intergenic | 30.0% | |
| GTGATCAATAAGATCTATAG+AGG | + | chr3_2:56636474-56636493 | None:intergenic | 30.0% | |
| GATCACTTAGATGATATCAA+TGG | - | chr3_2:56636488-56636507 | Msa0412820:intron | 30.0% | |
| TTTGACTAAAAATGTGAGAC+AGG | + | chr3_2:56636566-56636585 | None:intergenic | 30.0% | |
| AGTCAAAAAAGTTGAGATTG+AGG | - | chr3_2:56636579-56636598 | Msa0412820:intron | 30.0% | |
| ! | CTTCATATTGAAAGCGTATT+TGG | + | chr3_2:56636872-56636891 | None:intergenic | 30.0% |
| !!! | ACAAAGCTGTTTTTTGATTC+AGG | - | chr3_2:56637050-56637069 | Msa0412820:intron | 30.0% |
| !!! | TTTTTTGATTCAGGTGTCTT+AGG | - | chr3_2:56637059-56637078 | Msa0412820:intron | 30.0% |
| CAGAATCTTACAATTCTCTT+TGG | + | chr3_2:56637188-56637207 | None:intergenic | 30.0% | |
| !!! | TGTCCTATGATCCATTTTTT+AGG | - | chr3_2:56637257-56637276 | Msa0412820:CDS | 30.0% |
| GGATTTACAAGTACAATGAA+AGG | + | chr3_2:56637301-56637320 | None:intergenic | 30.0% | |
| GTTTGTGCTTTGTAGATTGA+AGG | - | chr3_2:56634728-56634747 | Msa0412820:intron | 35.0% | |
| ! | GTTTAGTTGGAATTTGAAGC+TGG | - | chr3_2:56634838-56634857 | Msa0412820:intron | 35.0% |
| !! | TTGCATGTTTGTTGTATTGG+TGG | - | chr3_2:56634967-56634986 | Msa0412820:intron | 35.0% |
| !! | TGCATGTTTGTTGTATTGGT+GGG | - | chr3_2:56634968-56634987 | Msa0412820:intron | 35.0% |
| AACAAGAGAGAGAAAAAGTG+GGG | + | chr3_2:56635257-56635276 | None:intergenic | 35.0% | |
| GAACAAGAGAGAGAAAAAGT+GGG | + | chr3_2:56635258-56635277 | None:intergenic | 35.0% | |
| TGAACAAGAGAGAGAAAAAG+TGG | + | chr3_2:56635259-56635278 | None:intergenic | 35.0% | |
| GCTCAGAATTCTAATCTATG+TGG | - | chr3_2:56635315-56635334 | Msa0412820:intron | 35.0% | |
| !!! | AATTGCTTTTGTTGTTGTGC+AGG | - | chr3_2:56635468-56635487 | Msa0412820:CDS | 35.0% |
| !!! | ATTGCTTTTGTTGTTGTGCA+GGG | - | chr3_2:56635469-56635488 | Msa0412820:CDS | 35.0% |
| TCCACATTTATGCAGACATA+TGG | - | chr3_2:56635741-56635760 | Msa0412820:intron | 35.0% | |
| TCCATATGTCTGCATAAATG+TGG | + | chr3_2:56635745-56635764 | None:intergenic | 35.0% | |
| ATTGAAAGAGAACAGGAATG+TGG | - | chr3_2:56636106-56636125 | Msa0412820:intron | 35.0% | |
| AACACTTGAAACACATTTGG+TGG | + | chr3_2:56636177-56636196 | None:intergenic | 35.0% | |
| ! | GTTTCAAGTGTTACAGAGAA+TGG | - | chr3_2:56636185-56636204 | Msa0412820:intron | 35.0% |
| ACTGGAAACAATCTAAGGAT+GGG | + | chr3_2:56636245-56636264 | None:intergenic | 35.0% | |
| AACTGGAAACAATCTAAGGA+TGG | + | chr3_2:56636246-56636265 | None:intergenic | 35.0% | |
| AAATGTGAGACAGGAAATTC+AGG | + | chr3_2:56636557-56636576 | None:intergenic | 35.0% | |
| !! | CCAATCTCTAAAGTGTAAAG+AGG | + | chr3_2:56636691-56636710 | None:intergenic | 35.0% |
| ! | CCTCTTTACACTTTAGAGAT+TGG | - | chr3_2:56636688-56636707 | Msa0412820:intron | 35.0% |
| ACGCTTTCAATATGAAGTGT+TGG | - | chr3_2:56636875-56636894 | Msa0412820:intron | 35.0% | |
| TTGTGTCTGTGTAAATCCAA+AGG | + | chr3_2:56637138-56637157 | None:intergenic | 35.0% | |
| ACAAGTGACATTGTTGATGT+TGG | - | chr3_2:56637154-56637173 | Msa0412820:intron | 35.0% | |
| CAAGTGACATTGTTGATGTT+GGG | - | chr3_2:56637155-56637174 | Msa0412820:intron | 35.0% | |
| !!! | TCACTGTTTTTCAGGGCATT+AGG | - | chr3_2:56635172-56635191 | Msa0412820:intron | 40.0% |
| AAGGAGGATGCTTTCAAATG+AGG | - | chr3_2:56635212-56635231 | Msa0412820:intron | 40.0% | |
| !!! | TTTTTTGTGAGTGGCAATGC+TGG | - | chr3_2:56635646-56635665 | Msa0412820:CDS | 40.0% |
| !! | TTCTGAAGTTGCAATAGAGC+AGG | + | chr3_2:56635986-56636005 | None:intergenic | 40.0% |
| GCTCTATTGCAACTTCAGAA+AGG | - | chr3_2:56635986-56636005 | Msa0412820:intron | 40.0% | |
| !! | TCAGAAAGGTGTCACAGATT+TGG | - | chr3_2:56636000-56636019 | Msa0412820:intron | 40.0% |
| GTGTCACAGATTTGGAAGAA+AGG | - | chr3_2:56636008-56636027 | Msa0412820:intron | 40.0% | |
| ! | CACATTTGGTGGCAACAATT+AGG | + | chr3_2:56636166-56636185 | None:intergenic | 40.0% |
| ! | CTTGGGTCTGGAATAATAAG+AGG | + | chr3_2:56637232-56637251 | None:intergenic | 40.0% |
| GATCATAGGACACATGTCTT+GGG | + | chr3_2:56637249-56637268 | None:intergenic | 40.0% | |
| GACACACAAACTCGAGACAT+CGG | + | chr3_2:56634705-56634724 | None:intergenic | 45.0% | |
| CTCCTTCTTTATCCCTTGGA+TGG | + | chr3_2:56635198-56635217 | None:intergenic | 45.0% | |
| CATCCAAGGGATAAAGAAGG+AGG | - | chr3_2:56635196-56635215 | Msa0412820:intron | 45.0% | |
| CATCCTCCTTCTTTATCCCT+TGG | + | chr3_2:56635202-56635221 | None:intergenic | 45.0% | |
| !! | GTTTTAGTGGCCTTACCCTT+AGG | + | chr3_2:56635499-56635518 | None:intergenic | 45.0% |
| AAATAGCGCACCACACATCA+GGG | + | chr3_2:56635549-56635568 | None:intergenic | 45.0% | |
| TAAATAGCGCACCACACATC+AGG | + | chr3_2:56635550-56635569 | None:intergenic | 45.0% | |
| ! | ACAGGAATGTGGAGTTTGCT+TGG | - | chr3_2:56636117-56636136 | Msa0412820:intron | 45.0% |
| !! | TGACATGACGGATATGTGTG+TGG | + | chr3_2:56636813-56636832 | None:intergenic | 45.0% |
| TCCGTCATGTCATGTCATGT+CGG | - | chr3_2:56636821-56636840 | Msa0412820:intron | 45.0% | |
| TCCGACATGACATGACATGA+CGG | + | chr3_2:56636825-56636844 | None:intergenic | 45.0% | |
| TCATGTCATGTCATGTCGGA+TGG | - | chr3_2:56636825-56636844 | Msa0412820:intron | 45.0% | |
| TTACTCTCTTCAGGCTATCC+CGG | + | chr3_2:56637105-56637124 | None:intergenic | 45.0% | |
| AGCCTGAAGAGAGTAAACTC+TGG | - | chr3_2:56637109-56637128 | Msa0412820:intron | 45.0% | |
| CACCAGAGTTTACTCTCTTC+AGG | + | chr3_2:56637114-56637133 | None:intergenic | 45.0% | |
| GAGTAAACTCTGGTGACCTT+TGG | - | chr3_2:56637119-56637138 | Msa0412820:intron | 45.0% | |
| GGATCATAGGACACATGTCT+TGG | + | chr3_2:56637250-56637269 | None:intergenic | 45.0% | |
| GGCCATCCAAGGGATAAAGA+AGG | - | chr3_2:56635193-56635212 | Msa0412820:intron | 50.0% | |
| GAGGCTATCATACAGTCCAG+TGG | - | chr3_2:56635231-56635250 | Msa0412820:intron | 50.0% | |
| !! | TGGACTGATTACCGACTTGC+TGG | - | chr3_2:56635280-56635299 | Msa0412820:intron | 50.0% |
| !! | AACCAAGAGCACCAGCAAGT+CGG | + | chr3_2:56635294-56635313 | None:intergenic | 50.0% |
| !!! | CTTTTGTTGTTGTGCAGGGC+CGG | - | chr3_2:56635473-56635492 | Msa0412820:CDS | 50.0% |
| CAAATTCCGCTGCGTTGTAG+TGG | + | chr3_2:56635614-56635633 | None:intergenic | 50.0% | |
| ! | GGAATGTGGAGTTTGCTTGG+AGG | - | chr3_2:56636120-56636139 | Msa0412820:intron | 50.0% |
| ! | CTCAATCTTGCCCCTTTTGC+CGG | - | chr3_2:56637083-56637102 | Msa0412820:intron | 50.0% |
| ! | TCAATCTTGCCCCTTTTGCC+GGG | - | chr3_2:56637084-56637103 | Msa0412820:intron | 50.0% |
| TTCAGGCTATCCCGGCAAAA+GGG | + | chr3_2:56637097-56637116 | None:intergenic | 50.0% | |
| TAGGACACATGTCTTGGGTC+TGG | + | chr3_2:56637244-56637263 | None:intergenic | 50.0% | |
| ! | TCAGGGCATTAGGCCATCCA+AGG | - | chr3_2:56635182-56635201 | Msa0412820:intron | 55.0% |
| ! | CAGGGCATTAGGCCATCCAA+GGG | - | chr3_2:56635183-56635202 | Msa0412820:intron | 55.0% |
| GAGAGAAAAAGTGGGGCCAC+TGG | + | chr3_2:56635250-56635269 | None:intergenic | 55.0% | |
| !! | TACCGACTTGCTGGTGCTCT+TGG | - | chr3_2:56635289-56635308 | Msa0412820:intron | 55.0% |
| ! | TAGTGGCCTTACCCTTAGGC+CGG | + | chr3_2:56635495-56635514 | None:intergenic | 55.0% |
| GCGTTGTAGTGGCATAGCAC+TGG | + | chr3_2:56635603-56635622 | None:intergenic | 55.0% | |
| GCTATGCCACTACAACGCAG+CGG | - | chr3_2:56635605-56635624 | Msa0412820:CDS | 55.0% | |
| TCAGGCTATCCCGGCAAAAG+GGG | + | chr3_2:56637096-56637115 | None:intergenic | 55.0% | |
| CTTCAGGCTATCCCGGCAAA+AGG | + | chr3_2:56637098-56637117 | None:intergenic | 55.0% | |
| TGTTGTGCAGGGCCGGCCTA+AGG | - | chr3_2:56635480-56635499 | Msa0412820:CDS | 65.0% | |
| GTTGTGCAGGGCCGGCCTAA+GGG | - | chr3_2:56635481-56635500 | Msa0412820:CDS | 65.0% | |
| ATTGGGCCGGCCCTGATGTG+TGG | - | chr3_2:56635536-56635555 | Msa0412820:CDS | 65.0% | |
| AGCGCACCACACATCAGGGC+CGG | + | chr3_2:56635545-56635564 | None:intergenic | 65.0% | |
| GCAGGGCCGGCCTAAGGGTA+AGG | - | chr3_2:56635486-56635505 | Msa0412820:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 56634290 | 56637364 | 56634290 | ID=Msa0412820;Name=Msa0412820 |
| chr3_2 | mRNA | 56634290 | 56637364 | 56634290 | ID=Msa0412820-mRNA-1;Parent=Msa0412820;Name=Msa0412820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=48|1|1|1|1|1|5|82|243 |
| chr3_2 | exon | 56634290 | 56634582 | 56634290 | ID=Msa0412820-mRNA-1:exon:11572;Parent=Msa0412820-mRNA-1 |
| chr3_2 | exon | 56635448 | 56635682 | 56635448 | ID=Msa0412820-mRNA-1:exon:11571;Parent=Msa0412820-mRNA-1 |
| chr3_2 | exon | 56635832 | 56635898 | 56635832 | ID=Msa0412820-mRNA-1:exon:11570;Parent=Msa0412820-mRNA-1 |
| chr3_2 | exon | 56636318 | 56636468 | 56636318 | ID=Msa0412820-mRNA-1:exon:11569;Parent=Msa0412820-mRNA-1 |
| chr3_2 | exon | 56637249 | 56637364 | 56637249 | ID=Msa0412820-mRNA-1:exon:11568;Parent=Msa0412820-mRNA-1 |
| chr3_2 | five_prime_UTR | 56637317 | 56637364 | 56637317 | ID=Msa0412820-mRNA-1:five_prime_utr;Parent=Msa0412820-mRNA-1 |
| chr3_2 | CDS | 56637249 | 56637316 | 56637249 | ID=Msa0412820-mRNA-1:cds;Parent=Msa0412820-mRNA-1 |
| chr3_2 | CDS | 56636318 | 56636468 | 56636318 | ID=Msa0412820-mRNA-1:cds;Parent=Msa0412820-mRNA-1 |
| chr3_2 | CDS | 56635832 | 56635898 | 56635832 | ID=Msa0412820-mRNA-1:cds;Parent=Msa0412820-mRNA-1 |
| chr3_2 | CDS | 56635448 | 56635682 | 56635448 | ID=Msa0412820-mRNA-1:cds;Parent=Msa0412820-mRNA-1 |
| chr3_2 | CDS | 56634372 | 56634582 | 56634372 | ID=Msa0412820-mRNA-1:cds;Parent=Msa0412820-mRNA-1 |
| chr3_2 | three_prime_UTR | 56634290 | 56634371 | 56634290 | ID=Msa0412820-mRNA-1:three_prime_utr;Parent=Msa0412820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
