AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258600 MtrunA17_Chr4g0057571 98.843 432 5 0 1 432 1 432 0.0 885
Msa1258600 MtrunA17_Chr5g0416121 35.556 405 225 4 47 420 40 439 7.00e-88 274
Msa1258600 MtrunA17_Chr3g0144711 22.515 342 217 6 85 405 1 315 1.07e-23 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258600 AT3G48530.1 72.439 410 104 2 24 432 23 424 0.0 613
Msa1258600 AT1G69800.1 37.221 403 218 4 45 416 35 433 3.19e-84 265
Msa1258600 AT1G69800.2 37.221 403 218 4 45 416 64 462 5.56e-84 265
Msa1258600 AT1G69800.3 35.455 330 183 2 45 344 35 364 1.62e-64 212

Find 120 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACCCCACGGCTATTT+TGG 0.161714 8_2:-59828532 Msa1258600:CDS
CTATAATCATGATAGATTTC+TGG 0.217599 8_2:+59829042 None:intergenic
GGATCTGCAGCGACAACTTC+TGG 0.254340 8_2:-59829843 Msa1258600:CDS
GGATGAGAGTTGAAGATCTA+TGG 0.266856 8_2:-59830866 Msa1258600:CDS
TCAAAGTTTGACAGAACTTA+TGG 0.274031 8_2:+59828242 None:intergenic
ATGGGCTCCGTTTCTTGCTT+TGG 0.280669 8_2:-59829646 Msa1258600:CDS
TTCAACTCTCATCCCAAGTT+TGG 0.288163 8_2:+59830875 None:intergenic
CAGAAATCTATCATGATTAT+AGG 0.291433 8_2:-59829041 Msa1258600:intron
TTAGTGTGATTAGTCCTTCA+AGG 0.332347 8_2:+59828578 None:intergenic
ACTTCAATGGTTCGAAAGTT+GGG 0.335155 8_2:-59829478 Msa1258600:CDS
GAGAAAAGAAGAGGGAATAA+TGG 0.336001 8_2:-59830937 Msa1258600:CDS
CAAGCATTAAGTTTGTCATT+AGG 0.345513 8_2:+59830819 None:intergenic
TCTTTCCGCTAGTCATAATA+AGG 0.356461 8_2:+59828183 None:intergenic
CTCATCCCAAGTTTGGCTTC+TGG 0.357377 8_2:+59830882 None:intergenic
CACACCTTGATGATCTGTTT+TGG 0.359578 8_2:+59829414 None:intergenic
AAACAGGTTCGAGATATTTC+AGG 0.361042 8_2:-59829678 Msa1258600:intron
TTGACAAAGAGCAAATTCAT+AGG 0.378131 8_2:-59828627 Msa1258600:CDS
TATAATCATGATAGATTTCT+GGG 0.381852 8_2:+59829043 None:intergenic
TCATCTCTTTAAATGCTTGA+AGG 0.382534 8_2:+59829163 None:intergenic
ATCGGAATAGTTGAGTTTGC+TGG 0.385140 8_2:-59830317 Msa1258600:CDS
TCAATCCAACTAGCATCTTC+AGG 0.389432 8_2:+59830347 None:intergenic
ATTCTAACATTAGTTAAAAC+AGG 0.399857 8_2:+59828297 None:intergenic
GTGAATTCATTACATGCAAA+AGG 0.403501 8_2:-59828681 Msa1258600:CDS
GACTTCAATGGTTCGAAAGT+TGG 0.404591 8_2:-59829479 Msa1258600:CDS
TCTTTAAATGCTTGAAGGAC+TGG 0.413459 8_2:+59829168 None:intergenic
AGTTTGGCTTCTGGACTCCT+TGG 0.419299 8_2:+59830891 None:intergenic
GGCAAAGGAAAAGCAGAAAC+AGG 0.426999 8_2:+59830783 None:intergenic
TAATGAATTCACTTGACATT+GGG 0.434316 8_2:+59828692 None:intergenic
TCCCTCTACCTGCTAATAGC+AGG 0.435441 8_2:-59828489 Msa1258600:CDS
AGTTTGCTGGAATTGTTGTA+TGG 0.438748 8_2:-59830304 Msa1258600:CDS
GGCTGAAGCTGTGAAAATAT+TGG 0.439718 8_2:-59830414 Msa1258600:CDS
GTTGGAGTGGATGGACTCCT+AGG 0.442102 8_2:+59829936 None:intergenic
AGGAGTCCAGAAGCCAAACT+TGG 0.448058 8_2:-59830888 Msa1258600:CDS
TTATTATGGGACAATGTGTT+GGG 0.452049 8_2:-59831042 Msa1258600:five_prime_UTR
ATTATTATGGGACAATGTGT+TGG 0.452353 8_2:-59831043 Msa1258600:five_prime_UTR
TTGGAGTGGATGGACTCCTA+GGG 0.452562 8_2:+59829937 None:intergenic
GCTCGAGAACTCGAAGCCTT+AGG 0.456172 8_2:-59829870 Msa1258600:CDS
CTTGCACTGGTTGGAGTGGA+TGG 0.469031 8_2:+59829927 None:intergenic
CAGAATGTGCCGGACTTCAA+TGG 0.469578 8_2:-59829491 Msa1258600:CDS
AATAAAATCAGATGCTACCT+TGG 0.469606 8_2:-59830435 Msa1258600:CDS
GACCTCCGTTAGAAGCTACT+TGG 0.479934 8_2:-59828734 Msa1258600:CDS
AGTAGCTTCTAACGGAGGTC+AGG 0.486459 8_2:+59828737 None:intergenic
GAGTGTTCCTGTGGTAGACT+TGG 0.493238 8_2:-59829568 Msa1258600:CDS
GCTATTGCAGCCGCAGCAAA+CGG 0.494235 8_2:-59829903 Msa1258600:CDS
GAACTCGAAGCCTTAGGCCT+CGG 0.497616 8_2:-59829864 Msa1258600:CDS
GACGATGATGGGAACCTTGA+AGG 0.502311 8_2:-59828592 Msa1258600:CDS
CGCTGCAGATCCGAGGCCTA+AGG 0.503192 8_2:+59829854 None:intergenic
GTCTATGTTGTGGACGATGA+TGG 0.505650 8_2:-59828604 Msa1258600:CDS
CCCTCTACCTGCTAATAGCA+GGG 0.507334 8_2:-59828488 Msa1258600:CDS
GCAATAGCACTTGCACTGGT+TGG 0.511188 8_2:+59829918 None:intergenic
TGTTAAACCCTGCTATTAGC+AGG 0.522009 8_2:+59828481 None:intergenic
GGTGCATCAACATCCACAAC+AGG 0.523558 8_2:+59830368 None:intergenic
ACCAACATCAGATAGTTCCT+TGG 0.525523 8_2:+59829452 None:intergenic
ACCCGCCGTGATTCATATGT+TGG 0.528785 8_2:-59829514 Msa1258600:CDS
AACAGGTTCGAGATATTTCA+GGG 0.530914 8_2:-59829677 Msa1258600:intron
ATGCACCTGAAGATGCTAGT+TGG 0.531504 8_2:-59830352 Msa1258600:CDS
TGAATTCATTACATGCAAAA+GGG 0.536868 8_2:-59828680 Msa1258600:CDS
CCTGTGGTAGACTTGGGTGC+TGG 0.537100 8_2:-59829561 Msa1258600:CDS
ACCCTGCTATTAGCAGGTAG+AGG 0.541141 8_2:+59828487 None:intergenic
AAACTACCTTGGTTTGAAGC+AGG 0.544975 8_2:+59830762 None:intergenic
CAGGTTGAAGATGTGTATCT+AGG 0.549376 8_2:-59828357 Msa1258600:three_prime_UTR
ACTTTCGAACCATTGAAGTC+CGG 0.551209 8_2:+59829482 None:intergenic
TTCAAGCATTTAAAGAGATG+AGG 0.552251 8_2:-59829161 Msa1258600:CDS
GTAATGAATTCACTTGACAT+TGG 0.553550 8_2:+59828691 None:intergenic
GATGAGAGTTGAAGATCTAT+GGG 0.553732 8_2:-59830865 Msa1258600:CDS
GATCTCTCCAAAGCAAGAAA+CGG 0.557531 8_2:+59829639 None:intergenic
CTTCTCCAAGTAGCTTCTAA+CGG 0.558499 8_2:+59828729 None:intergenic
TGACAGAACTATTACAGTGA+AGG 0.559685 8_2:-59828764 Msa1258600:intron
CCTTGGTTTGAAGCAGGCAA+AGG 0.559732 8_2:+59830768 None:intergenic
AGAGGTGGCACCACGGCAGT+TGG 0.561682 8_2:-59829105 Msa1258600:CDS
CCCTGCTATTAGCAGGTAGA+GGG 0.561914 8_2:+59828488 None:intergenic
GTGGATGGACTCCTAGGGGA+TGG 0.565217 8_2:+59829942 None:intergenic
ACCAAGGAACTATCTGATGT+TGG 0.572252 8_2:-59829453 Msa1258600:CDS
CATATGTTGGCAGAATGTGC+CGG 0.573538 8_2:-59829501 Msa1258600:CDS
GGCTGCAATAGCACTTGCAC+TGG 0.573713 8_2:+59829914 None:intergenic
TATTCTGAGTGCACCTGTTG+TGG 0.573842 8_2:-59830381 Msa1258600:CDS
CTTAGAAAGCAGCAAGAGCA+TGG 0.576526 8_2:+59829602 None:intergenic
CACAGAGAGAGAAAAGAAGA+GGG 0.578839 8_2:-59830945 Msa1258600:CDS
ATATTTCAGGGACATTCCGA+TGG 0.579686 8_2:-59829665 Msa1258600:CDS
AATTCATAGGGTCTATGTTG+TGG 0.580570 8_2:-59828614 Msa1258600:CDS
CCTTTGCCTGCTTCAAACCA+AGG 0.581002 8_2:-59830768 Msa1258600:intron
CTTCAATGGTTCGAAAGTTG+GGG 0.582143 8_2:-59829477 Msa1258600:CDS
ACACAGAGAGAGAAAAGAAG+AGG 0.584820 8_2:-59830946 Msa1258600:CDS
TGACAAAGAGCAAATTCATA+GGG 0.586419 8_2:-59828626 Msa1258600:CDS
GAAATCACCAAAATAGCCGT+GGG 0.590135 8_2:+59828525 None:intergenic
GATGGACTCCTAGGGGATGG+AGG 0.592826 8_2:+59829945 None:intergenic
AGAAATCACCAAAATAGCCG+TGG 0.598829 8_2:+59828524 None:intergenic
AGCACTTGCACTGGTTGGAG+TGG 0.599023 8_2:+59829923 None:intergenic
GGGGTGCCTGTAATCAAAAG+AGG 0.599309 8_2:-59829123 Msa1258600:CDS
GTTCACCTTATTATGACTAG+CGG 0.600070 8_2:-59828188 Msa1258600:three_prime_UTR
GGAGTCCAGAAGCCAAACTT+GGG 0.600493 8_2:-59830887 Msa1258600:CDS
GCCAACATATGAATCACGGC+GGG 0.600876 8_2:+59829513 None:intergenic
AGTCTGAACCTCCATCCCCT+AGG 0.601038 8_2:-59829953 Msa1258600:CDS
AGAAGAGGGAATAATGGCAA+TGG 0.605880 8_2:-59830931 Msa1258600:CDS
TCTATGTTGTGGACGATGAT+GGG 0.613189 8_2:-59828603 Msa1258600:CDS
AAGCAAGAAACGGAGCCCAT+CGG 0.613620 8_2:+59829649 None:intergenic
AGATCTATGGGATGTTCAAG+AGG 0.614406 8_2:-59830853 Msa1258600:CDS
CACTAAGAGATATCATCTCA+AGG 0.615021 8_2:-59828561 Msa1258600:CDS
TTCTGCCAACATATGAATCA+CGG 0.617203 8_2:+59829509 None:intergenic
AGTGTTCCTGTGGTAGACTT+GGG 0.619646 8_2:-59829567 Msa1258600:CDS
GTTCGAAAGTTGGGGAACCA+AGG 0.622320 8_2:-59829469 Msa1258600:CDS
CTACAATGAGAGAGATGCCA+AGG 0.623153 8_2:-59830908 Msa1258600:CDS
CCAGCACCCAAGTCTACCAC+AGG 0.626540 8_2:+59829561 None:intergenic
AAGTTGTCGCTGCAGATCCG+AGG 0.626836 8_2:+59829847 None:intergenic
AGTTGGATTGATAGATACAT+CGG 0.633207 8_2:-59830335 Msa1258600:CDS
TATTTCAGGGACATTCCGAT+GGG 0.633257 8_2:-59829664 Msa1258600:CDS
AAAAGTATTTCCGTTTGCTG+CGG 0.635232 8_2:+59829893 None:intergenic
CAAAATGAAGAGTGTTCCTG+TGG 0.635403 8_2:-59829577 Msa1258600:CDS
TGGAGTGGATGGACTCCTAG+GGG 0.642969 8_2:+59829938 None:intergenic
GTGCCTGTAATCAAAAGAGG+TGG 0.647223 8_2:-59829120 Msa1258600:CDS
GCTTATATTACCAACTGCCG+TGG 0.652654 8_2:+59829095 None:intergenic
GACGCCAAAACAGATCATCA+AGG 0.655091 8_2:-59829418 Msa1258600:intron
TGAACTTTATAAGAACACCA+AGG 0.657415 8_2:-59829793 Msa1258600:intron
ATAGCAGGGTTTAACAGACA+TGG 0.671919 8_2:-59828474 Msa1258600:exon
CTCCAAGTAGCTTCTAACGG+AGG 0.681992 8_2:+59828732 None:intergenic
AGGCTAGTACATGAACCCCA+CGG 0.706623 8_2:-59828541 Msa1258600:CDS
ATAATCATGATAGATTTCTG+GGG 0.708208 8_2:+59829044 None:intergenic
TGCCAACATATGAATCACGG+CGG 0.717560 8_2:+59829512 None:intergenic
AATCAAAAGAGGTGGCACCA+CGG 0.732628 8_2:-59829112 Msa1258600:CDS
AAATCACCAAAATAGCCGTG+GGG 0.760400 8_2:+59828526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTCAGTTTATTATTAT+GGG - chr8_2:59828174-59828193 Msa1258600:three_prime_UTR 10.0%
!! AAAAATATGTATTTATCTTC+AGG - chr8_2:59830853-59830872 Msa1258600:CDS 15.0%
!!! ATTTTGCAAAATTTACATCA+TGG - chr8_2:59828623-59828642 Msa1258600:CDS 20.0%
!!! TTAATACATGTACTTTTTGT+TGG - chr8_2:59829128-59829147 Msa1258600:CDS 20.0%
!! TATAATCATGATAGATTTCT+GGG + chr8_2:59830189-59830208 None:intergenic 20.0%
!! TTTCATTACTTAATACTCAT+TGG - chr8_2:59830430-59830449 Msa1258600:CDS 20.0%
!!! TTTTTGAAATAATTCTTCAG+AGG - chr8_2:59830823-59830842 Msa1258600:CDS 20.0%
!! ATTCTAACATTAGTTAAAAC+AGG + chr8_2:59830935-59830954 None:intergenic 20.0%
!!! TGTTTTAACTAATGTTAGAA+TGG - chr8_2:59830934-59830953 Msa1258600:CDS 20.0%
!!! GTTTTAACTAATGTTAGAAT+GGG - chr8_2:59830935-59830954 Msa1258600:CDS 20.0%
! ATGAAAATTATGTGCATGTT+TGG - chr8_2:59828561-59828580 Msa1258600:CDS 25.0%
! ACACAAAATAACACATCAAT+TGG + chr8_2:59828710-59828729 None:intergenic 25.0%
!!! TGTGTGTGTATGTTTTTTTT+AGG - chr8_2:59828725-59828744 Msa1258600:CDS 25.0%
! TCACTTTCAGAATAAAAATG+AGG - chr8_2:59828995-59829014 Msa1258600:intron 25.0%
! AGAAGGATGAATTTAATACA+TGG - chr8_2:59829152-59829171 Msa1258600:CDS 25.0%
!! TGGATTATTTCATTCTTTTC+AGG - chr8_2:59830024-59830043 Msa1258600:intron 25.0%
! ATAATCATGATAGATTTCTG+GGG + chr8_2:59830188-59830207 None:intergenic 25.0%
! CTATAATCATGATAGATTTC+TGG + chr8_2:59830190-59830209 None:intergenic 25.0%
! CAGAAATCTATCATGATTAT+AGG - chr8_2:59830188-59830207 Msa1258600:intron 25.0%
! GAAAAAAGATATTAGCAATG+TGG + chr8_2:59830389-59830408 None:intergenic 25.0%
! TAATGAATTCACTTGACATT+GGG + chr8_2:59830540-59830559 None:intergenic 25.0%
! TGAATTCATTACATGCAAAA+GGG - chr8_2:59830549-59830568 Msa1258600:intron 25.0%
!!! TATTTTGGTGATTTCTTTGA+TGG - chr8_2:59830712-59830731 Msa1258600:intron 25.0%
!! CTTTTATGTACTGTAAATTC+TGG - chr8_2:59830959-59830978 Msa1258600:exon 25.0%
ATTATTATGGGACAATGTGT+TGG - chr8_2:59828186-59828205 Msa1258600:three_prime_UTR 30.0%
TTATTATGGGACAATGTGTT+GGG - chr8_2:59828187-59828206 Msa1258600:three_prime_UTR 30.0%
CAAGCATTAAGTTTGTCATT+AGG + chr8_2:59828413-59828432 None:intergenic 30.0%
ATATACACACTAAACTACCT+TGG + chr8_2:59828481-59828500 None:intergenic 30.0%
TATATGTATGTATGTCTGTG+TGG - chr8_2:59828496-59828515 Msa1258600:CDS 30.0%
! CATGCACATAATTTTCATCT+GGG + chr8_2:59828559-59828578 None:intergenic 30.0%
! ACATGCACATAATTTTCATC+TGG + chr8_2:59828560-59828579 None:intergenic 30.0%
TTGCAAAATTTACATCATGG+TGG - chr8_2:59828626-59828645 Msa1258600:CDS 30.0%
AATAAAATCAGATGCTACCT+TGG - chr8_2:59828794-59828813 Msa1258600:intron 30.0%
AGTTGGATTGATAGATACAT+CGG - chr8_2:59828894-59828913 Msa1258600:intron 30.0%
TTGCAAGTTTCAGATTCATA+TGG + chr8_2:59829034-59829053 None:intergenic 30.0%
!! ATGTACTTTTTGTTGGTAGA+AGG - chr8_2:59829135-59829154 Msa1258600:CDS 30.0%
GAAAATCACTTCAATAGAAC+AGG + chr8_2:59829209-59829228 None:intergenic 30.0%
! AGCTAATGTGATAATGTTGT+TGG - chr8_2:59829252-59829271 Msa1258600:intron 30.0%
TGAACTTTATAAGAACACCA+AGG - chr8_2:59829436-59829455 Msa1258600:CDS 30.0%
AATACAAACTCATTAGTAGC+TGG + chr8_2:59829503-59829522 None:intergenic 30.0%
ACACACATTTAAGAAATGCA+GGG + chr8_2:59829926-59829945 None:intergenic 30.0%
CTTAAATGTGTGTGCATATA+TGG - chr8_2:59829933-59829952 Msa1258600:CDS 30.0%
AAGCTTACTTTACTTGAAAG+GGG + chr8_2:59829981-59830000 None:intergenic 30.0%
CAAGCTTACTTTACTTGAAA+GGG + chr8_2:59829982-59830001 None:intergenic 30.0%
ACAAGCTTACTTTACTTGAA+AGG + chr8_2:59829983-59830002 None:intergenic 30.0%
!!! TCATTCTTTTCAGGTTTATG+AGG - chr8_2:59830033-59830052 Msa1258600:intron 30.0%
TCATCTCTTTAAATGCTTGA+AGG + chr8_2:59830069-59830088 None:intergenic 30.0%
TTCAAGCATTTAAAGAGATG+AGG - chr8_2:59830068-59830087 Msa1258600:intron 30.0%
TTAAAGAGATGAGGAAAAAG+AGG - chr8_2:59830077-59830096 Msa1258600:intron 30.0%
TAAAGAGATGAGGAAAAAGA+GGG - chr8_2:59830078-59830097 Msa1258600:intron 30.0%
! ATCACAATTTAAAACCTCTG+TGG + chr8_2:59830221-59830240 None:intergenic 30.0%
AACATTTCTCAGCAAAATCA+AGG + chr8_2:59830262-59830281 None:intergenic 30.0%
CTGAGAAATGTTGTCAAATA+TGG - chr8_2:59830270-59830289 Msa1258600:intron 30.0%
! CTAGACACAGTTCTAATAAA+AGG + chr8_2:59830365-59830384 None:intergenic 30.0%
GTAATGAATTCACTTGACAT+TGG + chr8_2:59830541-59830560 None:intergenic 30.0%
GTGAATTCATTACATGCAAA+AGG - chr8_2:59830548-59830567 Msa1258600:intron 30.0%
TTGACAAAGAGCAAATTCAT+AGG - chr8_2:59830602-59830621 Msa1258600:intron 30.0%
TGACAAAGAGCAAATTCATA+GGG - chr8_2:59830603-59830622 Msa1258600:intron 30.0%
TCAAAGTTTGACAGAACTTA+TGG + chr8_2:59830990-59831009 None:intergenic 30.0%
GAGAAAAGAAGAGGGAATAA+TGG - chr8_2:59828292-59828311 Msa1258600:three_prime_UTR 35.0%
GATGAGAGTTGAAGATCTAT+GGG - chr8_2:59828364-59828383 Msa1258600:three_prime_UTR 35.0%
!! TGATTGGTTTGTCAGAATCA+TGG + chr8_2:59828656-59828675 None:intergenic 35.0%
!! AGTTTGCTGGAATTGTTGTA+TGG - chr8_2:59828925-59828944 Msa1258600:intron 35.0%
! TGTTGTATGGATTTTGCATC+AGG - chr8_2:59828938-59828957 Msa1258600:intron 35.0%
!! AAAAGTATTTCCGTTTGCTG+CGG + chr8_2:59829339-59829358 None:intergenic 35.0%
!!! AACTTCTGGAAACTTTTTCG+AGG - chr8_2:59829400-59829419 Msa1258600:intron 35.0%
TAGACATTGCAAAACAACCT+TGG + chr8_2:59829456-59829475 None:intergenic 35.0%
!!! TAGCTAACTTTTTCGCAAAC+AGG - chr8_2:59829535-59829554 Msa1258600:CDS 35.0%
AAACAGGTTCGAGATATTTC+AGG - chr8_2:59829551-59829570 Msa1258600:CDS 35.0%
AACAGGTTCGAGATATTTCA+GGG - chr8_2:59829552-59829571 Msa1258600:CDS 35.0%
TTCTGCCAACATATGAATCA+CGG + chr8_2:59829723-59829742 None:intergenic 35.0%
ACTTCAATGGTTCGAAAGTT+GGG - chr8_2:59829751-59829770 Msa1258600:intron 35.0%
TGCAGAATTCATACTTGACA+AGG + chr8_2:59829873-59829892 None:intergenic 35.0%
CACACACATTTAAGAAATGC+AGG + chr8_2:59829927-59829946 None:intergenic 35.0%
GATCTTGATGAACTTGACAA+TGG - chr8_2:59830004-59830023 Msa1258600:intron 35.0%
TCTTTAAATGCTTGAAGGAC+TGG + chr8_2:59830064-59830083 None:intergenic 35.0%
TGACAGAACTATTACAGTGA+AGG - chr8_2:59830465-59830484 Msa1258600:intron 35.0%
AATTCATAGGGTCTATGTTG+TGG - chr8_2:59830615-59830634 Msa1258600:intron 35.0%
! TTAGTGTGATTAGTCCTTCA+AGG + chr8_2:59830654-59830673 None:intergenic 35.0%
CACTAAGAGATATCATCTCA+AGG - chr8_2:59830668-59830687 Msa1258600:intron 35.0%
GTTCACCTTATTATGACTAG+CGG - chr8_2:59831041-59831060 Msa1258600:five_prime_UTR 35.0%
TCTTTCCGCTAGTCATAATA+AGG + chr8_2:59831049-59831068 None:intergenic 35.0%
ACACAGAGAGAGAAAAGAAG+AGG - chr8_2:59828283-59828302 Msa1258600:three_prime_UTR 40.0%
CACAGAGAGAGAAAAGAAGA+GGG - chr8_2:59828284-59828303 Msa1258600:three_prime_UTR 40.0%
AGAAGAGGGAATAATGGCAA+TGG - chr8_2:59828298-59828317 Msa1258600:three_prime_UTR 40.0%
TTCAACTCTCATCCCAAGTT+TGG + chr8_2:59828357-59828376 None:intergenic 40.0%
GGATGAGAGTTGAAGATCTA+TGG - chr8_2:59828363-59828382 Msa1258600:three_prime_UTR 40.0%
AGATCTATGGGATGTTCAAG+AGG - chr8_2:59828376-59828395 Msa1258600:three_prime_UTR 40.0%
! AAACTACCTTGGTTTGAAGC+AGG + chr8_2:59828470-59828489 None:intergenic 40.0%
TCTGACAAACCAATCAACTG+TGG - chr8_2:59828660-59828679 Msa1258600:CDS 40.0%
TGTTTGGTACCACAGTTGAT+TGG + chr8_2:59828672-59828691 None:intergenic 40.0%
GTCACATACACATGCATGTT+TGG + chr8_2:59828688-59828707 None:intergenic 40.0%
! TATTTTCACAGCTTCAGCCA+AGG + chr8_2:59828814-59828833 None:intergenic 40.0%
GGCTGAAGCTGTGAAAATAT+TGG - chr8_2:59828815-59828834 Msa1258600:intron 40.0%
TCAATCCAACTAGCATCTTC+AGG + chr8_2:59828885-59828904 None:intergenic 40.0%
ATCGGAATAGTTGAGTTTGC+TGG - chr8_2:59828912-59828931 Msa1258600:intron 40.0%
ATATTTCAGGGACATTCCGA+TGG - chr8_2:59829564-59829583 Msa1258600:CDS 40.0%
TATTTCAGGGACATTCCGAT+GGG - chr8_2:59829565-59829584 Msa1258600:CDS 40.0%
GATCTCTCCAAAGCAAGAAA+CGG + chr8_2:59829593-59829612 None:intergenic 40.0%
!! CAAAATGAAGAGTGTTCCTG+TGG - chr8_2:59829652-59829671 Msa1258600:CDS 40.0%
ACTTTCGAACCATTGAAGTC+CGG + chr8_2:59829750-59829769 None:intergenic 40.0%
GACTTCAATGGTTCGAAAGT+TGG - chr8_2:59829750-59829769 Msa1258600:intron 40.0%
CTTCAATGGTTCGAAAGTTG+GGG - chr8_2:59829752-59829771 Msa1258600:intron 40.0%
ACCAAGGAACTATCTGATGT+TGG - chr8_2:59829776-59829795 Msa1258600:intron 40.0%
ACCAACATCAGATAGTTCCT+TGG + chr8_2:59829780-59829799 None:intergenic 40.0%
!! CACACCTTGATGATCTGTTT+TGG + chr8_2:59829818-59829837 None:intergenic 40.0%
GACAAGGTTCAATGCAATGA+GGG + chr8_2:59829857-59829876 None:intergenic 40.0%
TGACAAGGTTCAATGCAATG+AGG + chr8_2:59829858-59829877 None:intergenic 40.0%
TTATAGGTATGTCACCACAG+AGG - chr8_2:59830204-59830223 Msa1258600:intron 40.0%
CTCAGCAAAATCAAGGATTG+TGG + chr8_2:59830255-59830274 None:intergenic 40.0%
GTTGTCAAATATGGCTGATG+CGG - chr8_2:59830279-59830298 Msa1258600:intron 40.0%
CTTCTCCAAGTAGCTTCTAA+CGG + chr8_2:59830503-59830522 None:intergenic 40.0%
TCTATGTTGTGGACGATGAT+GGG - chr8_2:59830626-59830645 Msa1258600:intron 40.0%
AAATCACCAAAATAGCCGTG+GGG + chr8_2:59830706-59830725 None:intergenic 40.0%
GAAATCACCAAAATAGCCGT+GGG + chr8_2:59830707-59830726 None:intergenic 40.0%
AGAAATCACCAAAATAGCCG+TGG + chr8_2:59830708-59830727 None:intergenic 40.0%
TGTTAAACCCTGCTATTAGC+AGG + chr8_2:59830751-59830770 None:intergenic 40.0%
ATAGCAGGGTTTAACAGACA+TGG - chr8_2:59830755-59830774 Msa1258600:intron 40.0%
! CAGGTTGAAGATGTGTATCT+AGG - chr8_2:59830872-59830891 Msa1258600:CDS 40.0%
CTACAATGAGAGAGATGCCA+AGG - chr8_2:59828321-59828340 Msa1258600:three_prime_UTR 45.0%
GGCAAAGGAAAAGCAGAAAC+AGG + chr8_2:59828449-59828468 None:intergenic 45.0%
TATTCTGAGTGCACCTGTTG+TGG - chr8_2:59828848-59828867 Msa1258600:intron 45.0%
ATGCACCTGAAGATGCTAGT+TGG - chr8_2:59828877-59828896 Msa1258600:intron 45.0%
CTTAGAAAGCAGCAAGAGCA+TGG + chr8_2:59829630-59829649 None:intergenic 45.0%
AGTGTTCCTGTGGTAGACTT+GGG - chr8_2:59829662-59829681 Msa1258600:CDS 45.0%
TGCCAACATATGAATCACGG+CGG + chr8_2:59829720-59829739 None:intergenic 45.0%
CATATGTTGGCAGAATGTGC+CGG - chr8_2:59829728-59829747 Msa1258600:intron 45.0%
!!! ATCTGTTTTGGCGTCACAAG+GGG + chr8_2:59829806-59829825 None:intergenic 45.0%
!!! GATCTGTTTTGGCGTCACAA+GGG + chr8_2:59829807-59829826 None:intergenic 45.0%
!!! TGATCTGTTTTGGCGTCACA+AGG + chr8_2:59829808-59829827 None:intergenic 45.0%
GACGCCAAAACAGATCATCA+AGG - chr8_2:59829811-59829830 Msa1258600:CDS 45.0%
GAGATGAGGAAAAAGAGGGT+TGG - chr8_2:59830082-59830101 Msa1258600:intron 45.0%
ATGAGGAAAAAGAGGGTTGG+AGG - chr8_2:59830085-59830104 Msa1258600:intron 45.0%
TGAGGAAAAAGAGGGTTGGA+GGG - chr8_2:59830086-59830105 Msa1258600:intron 45.0%
GTGCCTGTAATCAAAAGAGG+TGG - chr8_2:59830109-59830128 Msa1258600:intron 45.0%
!! GTGCCACCTCTTTTGATTAC+AGG + chr8_2:59830115-59830134 None:intergenic 45.0%
AATCAAAAGAGGTGGCACCA+CGG - chr8_2:59830117-59830136 Msa1258600:intron 45.0%
GCTTATATTACCAACTGCCG+TGG + chr8_2:59830137-59830156 None:intergenic 45.0%
GATGTCTTTGACCGTGATTG+AGG + chr8_2:59830305-59830324 None:intergenic 45.0%
AAGGTCTGCATCCACAATTC+AGG + chr8_2:59830346-59830365 None:intergenic 45.0%
GTCTATGTTGTGGACGATGA+TGG - chr8_2:59830625-59830644 Msa1258600:intron 45.0%
! AGTTTGGCTTCTGGACTCCT+TGG + chr8_2:59828341-59828360 None:intergenic 50.0%
AGGAGTCCAGAAGCCAAACT+TGG - chr8_2:59828341-59828360 Msa1258600:three_prime_UTR 50.0%
GGAGTCCAGAAGCCAAACTT+GGG - chr8_2:59828342-59828361 Msa1258600:three_prime_UTR 50.0%
! CTCATCCCAAGTTTGGCTTC+TGG + chr8_2:59828350-59828369 None:intergenic 50.0%
! CCTTGGTTTGAAGCAGGCAA+AGG + chr8_2:59828464-59828483 None:intergenic 50.0%
CCTTTGCCTGCTTCAAACCA+AGG - chr8_2:59828461-59828480 Msa1258600:three_prime_UTR 50.0%
GGTGCATCAACATCCACAAC+AGG + chr8_2:59828864-59828883 None:intergenic 50.0%
! TTGGAGTGGATGGACTCCTA+GGG + chr8_2:59829295-59829314 None:intergenic 50.0%
! GCAATAGCACTTGCACTGGT+TGG + chr8_2:59829314-59829333 None:intergenic 50.0%
AAGCAAGAAACGGAGCCCAT+CGG + chr8_2:59829583-59829602 None:intergenic 50.0%
ATGGGCTCCGTTTCTTGCTT+TGG - chr8_2:59829583-59829602 Msa1258600:CDS 50.0%
GAGTGTTCCTGTGGTAGACT+TGG - chr8_2:59829661-59829680 Msa1258600:CDS 50.0%
ACCCGCCGTGATTCATATGT+TGG - chr8_2:59829715-59829734 Msa1258600:intron 50.0%
GCCAACATATGAATCACGGC+GGG + chr8_2:59829719-59829738 None:intergenic 50.0%
CAGAATGTGCCGGACTTCAA+TGG - chr8_2:59829738-59829757 Msa1258600:intron 50.0%
GTTCGAAAGTTGGGGAACCA+AGG - chr8_2:59829760-59829779 Msa1258600:intron 50.0%
GAGGAAAAAGAGGGTTGGAG+GGG - chr8_2:59830087-59830106 Msa1258600:intron 50.0%
! GGGGTGCCTGTAATCAAAAG+AGG - chr8_2:59830106-59830125 Msa1258600:intron 50.0%
ACAATTCAGGTCGTGACGCA+AGG + chr8_2:59830333-59830352 None:intergenic 50.0%
TTGCGTCACGACCTGAATTG+TGG - chr8_2:59830332-59830351 Msa1258600:CDS 50.0%
AGTAGCTTCTAACGGAGGTC+AGG + chr8_2:59830495-59830514 None:intergenic 50.0%
GACCTCCGTTAGAAGCTACT+TGG - chr8_2:59830495-59830514 Msa1258600:intron 50.0%
CTCCAAGTAGCTTCTAACGG+AGG + chr8_2:59830500-59830519 None:intergenic 50.0%
!! GACGATGATGGGAACCTTGA+AGG - chr8_2:59830637-59830656 Msa1258600:intron 50.0%
AGGCTAGTACATGAACCCCA+CGG - chr8_2:59830688-59830707 Msa1258600:intron 50.0%
! CATGAACCCCACGGCTATTT+TGG - chr8_2:59830697-59830716 Msa1258600:intron 50.0%
TCCCTCTACCTGCTAATAGC+AGG - chr8_2:59830740-59830759 Msa1258600:intron 50.0%
CCCTGCTATTAGCAGGTAGA+GGG + chr8_2:59830744-59830763 None:intergenic 50.0%
CCCTCTACCTGCTAATAGCA+GGG - chr8_2:59830741-59830760 Msa1258600:intron 50.0%
ACCCTGCTATTAGCAGGTAG+AGG + chr8_2:59830745-59830764 None:intergenic 50.0%
AGTCTGAACCTCCATCCCCT+AGG - chr8_2:59829276-59829295 Msa1258600:intron 55.0%
! TGGAGTGGATGGACTCCTAG+GGG + chr8_2:59829294-59829313 None:intergenic 55.0%
! GTTGGAGTGGATGGACTCCT+AGG + chr8_2:59829296-59829315 None:intergenic 55.0%
!! CTTGCACTGGTTGGAGTGGA+TGG + chr8_2:59829305-59829324 None:intergenic 55.0%
!! AGCACTTGCACTGGTTGGAG+TGG + chr8_2:59829309-59829328 None:intergenic 55.0%
GGCTGCAATAGCACTTGCAC+TGG + chr8_2:59829318-59829337 None:intergenic 55.0%
GCTATTGCAGCCGCAGCAAA+CGG - chr8_2:59829326-59829345 Msa1258600:intron 55.0%
GCTCGAGAACTCGAAGCCTT+AGG - chr8_2:59829359-59829378 Msa1258600:intron 55.0%
GAACTCGAAGCCTTAGGCCT+CGG - chr8_2:59829365-59829384 Msa1258600:intron 55.0%
AAGTTGTCGCTGCAGATCCG+AGG + chr8_2:59829385-59829404 None:intergenic 55.0%
GGATCTGCAGCGACAACTTC+TGG - chr8_2:59829386-59829405 Msa1258600:intron 55.0%
! GATGGACTCCTAGGGGATGG+AGG + chr8_2:59829287-59829306 None:intergenic 60.0%
! GTGGATGGACTCCTAGGGGA+TGG + chr8_2:59829290-59829309 None:intergenic 60.0%
CCAGCACCCAAGTCTACCAC+AGG + chr8_2:59829671-59829690 None:intergenic 60.0%
CCTGTGGTAGACTTGGGTGC+TGG - chr8_2:59829668-59829687 Msa1258600:CDS 60.0%
GGCTGATGCGGCCTCAATCA+CGG - chr8_2:59830291-59830310 Msa1258600:intron 60.0%
CGCTGCAGATCCGAGGCCTA+AGG + chr8_2:59829378-59829397 None:intergenic 65.0%
AGAGGTGGCACCACGGCAGT+TGG - chr8_2:59830124-59830143 Msa1258600:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 59828174 59831077 59828174 ID=Msa1258600;Name=Msa1258600
chr8_2 mRNA 59828174 59831077 59828174 ID=Msa1258600-mRNA-1;Parent=Msa1258600;Name=Msa1258600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=101|1|1|1|1|1|6|309|432
chr8_2 exon 59828174 59828780 59828174 ID=Msa1258600-mRNA-1:exon:18701;Parent=Msa1258600-mRNA-1
chr8_2 exon 59829042 59829205 59829042 ID=Msa1258600-mRNA-1:exon:18700;Parent=Msa1258600-mRNA-1
chr8_2 exon 59829419 59829694 59829419 ID=Msa1258600-mRNA-1:exon:18699;Parent=Msa1258600-mRNA-1
chr8_2 exon 59829794 59829973 59829794 ID=Msa1258600-mRNA-1:exon:18698;Parent=Msa1258600-mRNA-1
chr8_2 exon 59830292 59830464 59830292 ID=Msa1258600-mRNA-1:exon:18697;Parent=Msa1258600-mRNA-1
chr8_2 exon 59830769 59831077 59830769 ID=Msa1258600-mRNA-1:exon:18696;Parent=Msa1258600-mRNA-1
chr8_2 five_prime_UTR 59830977 59831077 59830977 ID=Msa1258600-mRNA-1:five_prime_utr;Parent=Msa1258600-mRNA-1
chr8_2 CDS 59830769 59830976 59830769 ID=Msa1258600-mRNA-1:cds;Parent=Msa1258600-mRNA-1
chr8_2 CDS 59830292 59830464 59830292 ID=Msa1258600-mRNA-1:cds;Parent=Msa1258600-mRNA-1
chr8_2 CDS 59829794 59829973 59829794 ID=Msa1258600-mRNA-1:cds;Parent=Msa1258600-mRNA-1
chr8_2 CDS 59829419 59829694 59829419 ID=Msa1258600-mRNA-1:cds;Parent=Msa1258600-mRNA-1
chr8_2 CDS 59829042 59829205 59829042 ID=Msa1258600-mRNA-1:cds;Parent=Msa1258600-mRNA-1
chr8_2 CDS 59828483 59828780 59828483 ID=Msa1258600-mRNA-1:cds;Parent=Msa1258600-mRNA-1
chr8_2 three_prime_UTR 59828174 59828482 59828174 ID=Msa1258600-mRNA-1:three_prime_utr;Parent=Msa1258600-mRNA-1
Gene Sequence

>Msa1258600

ATGCAGTTACACAGAGAGAGAAAAGAAGAGGGAATAATGGCAATGGCTACAATGAGAGAGATGCCAAGGAGTCCAGAAGCCAAACTTGGGATGAGAGTTGAAGATCTATGGGATGTTCAAGAGGCACAATTAAGTCCTAATGACAAACTTAATGCTTGTTTTGAAAGCATACCTGTTTCTGCTTTTCCTTTGCCTGCTTCAAACCAAGAGATTGAAATAAAATCAGATGCTACCTTGGCTGAAGCTGTGAAAATATTGGCACGTCACAATATTCTGAGTGCACCTGTTGTGGATGTTGATGCACCTGAAGATGCTAGTTGGATTGATAGATACATCGGAATAGTTGAGTTTGCTGGAATTGTTGTATGGATTTTGCATCAGTCTGAACCTCCATCCCCTAGGAGTCCATCCACTCCAACCAGTGCAAGTGCTATTGCAGCCGCAGCAAACGGAAATACTTTTGCTCGAGAACTCGAAGCCTTAGGCCTCGGATCTGCAGCGACAACTTCTGGAAACTTTTTCGAGGATCTTACTTCTTCTGAACTTTATAAGAACACCAAGGTTCGAGATATTTCAGGGACATTCCGATGGGCTCCGTTTCTTGCTTTGGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCTAAGTACAAAATGAAGAGTGTTCCTGTGGTAGACTTGGGTGCTGGTACAATTGATAACATCATCACACAACCCGCCGTGATTCATATGTTGGCAGAATGTGCCGGACTTCAATGGTTCGAAAGTTGGGGAACCAAGGAACTATCTGATGTTGGTCTTCCCCTTGTGACGCCAAAACAGATCATCAAGGTTTATGAGGATGAACCAGTCCTTCAAGCATTTAAAGAGATGAGGAAAAAGAGGGTTGGAGGGGTGCCTGTAATCAAAAGAGGTGGCACCACGGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAACTGCCCCAGAAATCTATCATGATTATAGAACTATTACAGTGAAGGACTTCCTGACCTCCGTTAGAAGCTACTTGGAGAAGAATAAAAACGCATTCCCAATGTCAAGTGAATTCATTACATGCAAAAGGGACTGTACAGTGAAAGAGTTGATTCAATTGCTTGACAAAGAGCAAATTCATAGGGTCTATGTTGTGGACGATGATGGGAACCTTGAAGGACTAATCACACTAAGAGATATCATCTCAAGGCTAGTACATGAACCCCACGGCTATTTTGGTGATTTCTTTGATGGTGTTCTCCCTCTACCTGCTAATAGCAGGGTTTAA

Protein sequence

>Msa1258600

MQLHRERKEEGIMAMATMREMPRSPEAKLGMRVEDLWDVQEAQLSPNDKLNACFESIPVSAFPLPASNQEIEIKSDATLAEAVKILARHNILSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPPSPRSPSTPTSASAIAAAANGNTFARELEALGLGSAATTSGNFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGTIDNIITQPAVIHMLAECAGLQWFESWGTKELSDVGLPLVTPKQIIKVYEDEPVLQAFKEMRKKRVGGVPVIKRGGTTAVGNISLRDVQFLLTAPEIYHDYRTITVKDFLTSVRSYLEKNKNAFPMSSEFITCKRDCTVKELIQLLDKEQIHRVYVVDDDGNLEGLITLRDIISRLVHEPHGYFGDFFDGVLPLPANSRV*