AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400940 MtrunA17_Chr4g0057571 98.843 432 5 0 1 432 1 432 0.0 885
Msa1400940 MtrunA17_Chr5g0416121 35.556 405 225 4 47 420 40 439 7.00e-88 274
Msa1400940 MtrunA17_Chr3g0144711 22.515 342 217 6 85 405 1 315 1.07e-23 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400940 AT3G48530.1 72.439 410 104 2 24 432 23 424 0.0 613
Msa1400940 AT1G69800.1 37.221 403 218 4 45 416 35 433 3.19e-84 265
Msa1400940 AT1G69800.2 37.221 403 218 4 45 416 64 462 5.56e-84 265
Msa1400940 AT1G69800.3 35.455 330 183 2 45 344 35 364 1.62e-64 212

Find 120 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACCCCACGGCTATTT+TGG 0.161714 tig0022494:-44805 Msa1400940:CDS
CTATAATCATGATAGATTTC+TGG 0.217599 tig0022494:+45315 None:intergenic
GGATCTGCAGCGACAACTTC+TGG 0.254340 tig0022494:-46116 Msa1400940:CDS
GGATGAGAGTTGAAGATCTA+TGG 0.266856 tig0022494:-47139 Msa1400940:CDS
TCAAAGTTTGACAGAACTTA+TGG 0.274031 tig0022494:+44515 None:intergenic
ATGGGCTCCGTTTCTTGCTT+TGG 0.280669 tig0022494:-45919 Msa1400940:CDS
TTCAACTCTCATCCCAAGTT+TGG 0.288163 tig0022494:+47148 None:intergenic
CAGAAATCTATCATGATTAT+AGG 0.291433 tig0022494:-45314 Msa1400940:intron
TTAGTGTGATTAGTCCTTCA+AGG 0.332347 tig0022494:+44851 None:intergenic
ACTTCAATGGTTCGAAAGTT+GGG 0.335155 tig0022494:-45751 Msa1400940:CDS
GAGAAAAGAAGAGGGAATAA+TGG 0.336001 tig0022494:-47210 Msa1400940:CDS
CAAGCATTAAGTTTGTCATT+AGG 0.345513 tig0022494:+47092 None:intergenic
TCTTTCCGCTAGTCATAATA+AGG 0.356461 tig0022494:+44456 None:intergenic
CTCATCCCAAGTTTGGCTTC+TGG 0.357377 tig0022494:+47155 None:intergenic
CACACCTTGATGATCTGTTT+TGG 0.359578 tig0022494:+45687 None:intergenic
AAACAGGTTCGAGATATTTC+AGG 0.361042 tig0022494:-45951 Msa1400940:intron
TTGACAAAGAGCAAATTCAT+AGG 0.378131 tig0022494:-44900 Msa1400940:CDS
TATAATCATGATAGATTTCT+GGG 0.381852 tig0022494:+45316 None:intergenic
TCATCTCTTTAAATGCTTGA+AGG 0.382534 tig0022494:+45436 None:intergenic
ATCGGAATAGTTGAGTTTGC+TGG 0.385140 tig0022494:-46590 Msa1400940:CDS
TCAATCCAACTAGCATCTTC+AGG 0.389432 tig0022494:+46620 None:intergenic
ATTCTAACATTAGTTAAAAC+AGG 0.399857 tig0022494:+44570 None:intergenic
GTGAATTCATTACATGCAAA+AGG 0.403501 tig0022494:-44954 Msa1400940:CDS
GACTTCAATGGTTCGAAAGT+TGG 0.404591 tig0022494:-45752 Msa1400940:CDS
TCTTTAAATGCTTGAAGGAC+TGG 0.413459 tig0022494:+45441 None:intergenic
AGTTTGGCTTCTGGACTCCT+TGG 0.419299 tig0022494:+47164 None:intergenic
GGCAAAGGAAAAGCAGAAAC+AGG 0.426999 tig0022494:+47056 None:intergenic
TAATGAATTCACTTGACATT+GGG 0.434316 tig0022494:+44965 None:intergenic
TCCCTCTACCTGCTAATAGC+AGG 0.435441 tig0022494:-44762 Msa1400940:CDS
AGTTTGCTGGAATTGTTGTA+TGG 0.438748 tig0022494:-46577 Msa1400940:CDS
GGCTGAAGCTGTGAAAATAT+TGG 0.439718 tig0022494:-46687 Msa1400940:CDS
GTTGGAGTGGATGGACTCCT+AGG 0.442102 tig0022494:+46209 None:intergenic
AGGAGTCCAGAAGCCAAACT+TGG 0.448058 tig0022494:-47161 Msa1400940:CDS
TTATTATGGGACAATGTGTT+GGG 0.452049 tig0022494:-47315 Msa1400940:five_prime_UTR
ATTATTATGGGACAATGTGT+TGG 0.452353 tig0022494:-47316 Msa1400940:five_prime_UTR
TTGGAGTGGATGGACTCCTA+GGG 0.452562 tig0022494:+46210 None:intergenic
GCTCGAGAACTCGAAGCCTT+AGG 0.456172 tig0022494:-46143 Msa1400940:CDS
CTTGCACTGGTTGGAGTGGA+TGG 0.469031 tig0022494:+46200 None:intergenic
CAGAATGTGCCGGACTTCAA+TGG 0.469578 tig0022494:-45764 Msa1400940:CDS
AATAAAATCAGATGCTACCT+TGG 0.469606 tig0022494:-46708 Msa1400940:CDS
GACCTCCGTTAGAAGCTACT+TGG 0.479934 tig0022494:-45007 Msa1400940:CDS
AGTAGCTTCTAACGGAGGTC+AGG 0.486459 tig0022494:+45010 None:intergenic
GAGTGTTCCTGTGGTAGACT+TGG 0.493238 tig0022494:-45841 Msa1400940:CDS
GCTATTGCAGCCGCAGCAAA+CGG 0.494235 tig0022494:-46176 Msa1400940:CDS
GAACTCGAAGCCTTAGGCCT+CGG 0.497616 tig0022494:-46137 Msa1400940:CDS
GACGATGATGGGAACCTTGA+AGG 0.502311 tig0022494:-44865 Msa1400940:CDS
CGCTGCAGATCCGAGGCCTA+AGG 0.503192 tig0022494:+46127 None:intergenic
GTCTATGTTGTGGACGATGA+TGG 0.505650 tig0022494:-44877 Msa1400940:CDS
CCCTCTACCTGCTAATAGCA+GGG 0.507334 tig0022494:-44761 Msa1400940:CDS
GCAATAGCACTTGCACTGGT+TGG 0.511188 tig0022494:+46191 None:intergenic
TGTTAAACCCTGCTATTAGC+AGG 0.522009 tig0022494:+44754 None:intergenic
GGTGCATCAACATCCACAAC+AGG 0.523558 tig0022494:+46641 None:intergenic
ACCAACATCAGATAGTTCCT+TGG 0.525523 tig0022494:+45725 None:intergenic
ACCCGCCGTGATTCATATGT+TGG 0.528785 tig0022494:-45787 Msa1400940:CDS
AACAGGTTCGAGATATTTCA+GGG 0.530914 tig0022494:-45950 Msa1400940:intron
ATGCACCTGAAGATGCTAGT+TGG 0.531504 tig0022494:-46625 Msa1400940:CDS
TGAATTCATTACATGCAAAA+GGG 0.536868 tig0022494:-44953 Msa1400940:CDS
CCTGTGGTAGACTTGGGTGC+TGG 0.537100 tig0022494:-45834 Msa1400940:CDS
ACCCTGCTATTAGCAGGTAG+AGG 0.541141 tig0022494:+44760 None:intergenic
AAACTACCTTGGTTTGAAGC+AGG 0.544975 tig0022494:+47035 None:intergenic
CAGGTTGAAGATGTGTATCT+AGG 0.549376 tig0022494:-44630 Msa1400940:three_prime_UTR
ACTTTCGAACCATTGAAGTC+CGG 0.551209 tig0022494:+45755 None:intergenic
TTCAAGCATTTAAAGAGATG+AGG 0.552251 tig0022494:-45434 Msa1400940:CDS
GTAATGAATTCACTTGACAT+TGG 0.553550 tig0022494:+44964 None:intergenic
GATGAGAGTTGAAGATCTAT+GGG 0.553732 tig0022494:-47138 Msa1400940:CDS
GATCTCTCCAAAGCAAGAAA+CGG 0.557531 tig0022494:+45912 None:intergenic
CTTCTCCAAGTAGCTTCTAA+CGG 0.558499 tig0022494:+45002 None:intergenic
TGACAGAACTATTACAGTGA+AGG 0.559685 tig0022494:-45037 Msa1400940:intron
CCTTGGTTTGAAGCAGGCAA+AGG 0.559732 tig0022494:+47041 None:intergenic
AGAGGTGGCACCACGGCAGT+TGG 0.561682 tig0022494:-45378 Msa1400940:CDS
CCCTGCTATTAGCAGGTAGA+GGG 0.561914 tig0022494:+44761 None:intergenic
GTGGATGGACTCCTAGGGGA+TGG 0.565217 tig0022494:+46215 None:intergenic
ACCAAGGAACTATCTGATGT+TGG 0.572252 tig0022494:-45726 Msa1400940:CDS
CATATGTTGGCAGAATGTGC+CGG 0.573538 tig0022494:-45774 Msa1400940:CDS
GGCTGCAATAGCACTTGCAC+TGG 0.573713 tig0022494:+46187 None:intergenic
TATTCTGAGTGCACCTGTTG+TGG 0.573842 tig0022494:-46654 Msa1400940:CDS
CTTAGAAAGCAGCAAGAGCA+TGG 0.576526 tig0022494:+45875 None:intergenic
CACAGAGAGAGAAAAGAAGA+GGG 0.578839 tig0022494:-47218 Msa1400940:CDS
ATATTTCAGGGACATTCCGA+TGG 0.579686 tig0022494:-45938 Msa1400940:CDS
AATTCATAGGGTCTATGTTG+TGG 0.580570 tig0022494:-44887 Msa1400940:CDS
CCTTTGCCTGCTTCAAACCA+AGG 0.581002 tig0022494:-47041 Msa1400940:intron
CTTCAATGGTTCGAAAGTTG+GGG 0.582143 tig0022494:-45750 Msa1400940:CDS
ACACAGAGAGAGAAAAGAAG+AGG 0.584820 tig0022494:-47219 Msa1400940:CDS
TGACAAAGAGCAAATTCATA+GGG 0.586419 tig0022494:-44899 Msa1400940:CDS
GAAATCACCAAAATAGCCGT+GGG 0.590135 tig0022494:+44798 None:intergenic
GATGGACTCCTAGGGGATGG+AGG 0.592826 tig0022494:+46218 None:intergenic
AGAAATCACCAAAATAGCCG+TGG 0.598829 tig0022494:+44797 None:intergenic
AGCACTTGCACTGGTTGGAG+TGG 0.599023 tig0022494:+46196 None:intergenic
GGGGTGCCTGTAATCAAAAG+AGG 0.599309 tig0022494:-45396 Msa1400940:CDS
GTTCACCTTATTATGACTAG+CGG 0.600070 tig0022494:-44461 Msa1400940:three_prime_UTR
GGAGTCCAGAAGCCAAACTT+GGG 0.600493 tig0022494:-47160 Msa1400940:CDS
GCCAACATATGAATCACGGC+GGG 0.600876 tig0022494:+45786 None:intergenic
AGTCTGAACCTCCATCCCCT+AGG 0.601038 tig0022494:-46226 Msa1400940:CDS
AGAAGAGGGAATAATGGCAA+TGG 0.605880 tig0022494:-47204 Msa1400940:CDS
TCTATGTTGTGGACGATGAT+GGG 0.613189 tig0022494:-44876 Msa1400940:CDS
AAGCAAGAAACGGAGCCCAT+CGG 0.613620 tig0022494:+45922 None:intergenic
AGATCTATGGGATGTTCAAG+AGG 0.614406 tig0022494:-47126 Msa1400940:CDS
CACTAAGAGATATCATCTCA+AGG 0.615021 tig0022494:-44834 Msa1400940:CDS
TTCTGCCAACATATGAATCA+CGG 0.617203 tig0022494:+45782 None:intergenic
AGTGTTCCTGTGGTAGACTT+GGG 0.619646 tig0022494:-45840 Msa1400940:CDS
GTTCGAAAGTTGGGGAACCA+AGG 0.622320 tig0022494:-45742 Msa1400940:CDS
CTACAATGAGAGAGATGCCA+AGG 0.623153 tig0022494:-47181 Msa1400940:CDS
CCAGCACCCAAGTCTACCAC+AGG 0.626540 tig0022494:+45834 None:intergenic
AAGTTGTCGCTGCAGATCCG+AGG 0.626836 tig0022494:+46120 None:intergenic
AGTTGGATTGATAGATACAT+CGG 0.633207 tig0022494:-46608 Msa1400940:CDS
TATTTCAGGGACATTCCGAT+GGG 0.633257 tig0022494:-45937 Msa1400940:CDS
AAAAGTATTTCCGTTTGCTG+CGG 0.635232 tig0022494:+46166 None:intergenic
CAAAATGAAGAGTGTTCCTG+TGG 0.635403 tig0022494:-45850 Msa1400940:CDS
TGGAGTGGATGGACTCCTAG+GGG 0.642969 tig0022494:+46211 None:intergenic
GTGCCTGTAATCAAAAGAGG+TGG 0.647223 tig0022494:-45393 Msa1400940:CDS
GCTTATATTACCAACTGCCG+TGG 0.652654 tig0022494:+45368 None:intergenic
GACGCCAAAACAGATCATCA+AGG 0.655091 tig0022494:-45691 Msa1400940:intron
TGAACTTTATAAGAACACCA+AGG 0.657415 tig0022494:-46066 Msa1400940:intron
ATAGCAGGGTTTAACAGACA+TGG 0.671919 tig0022494:-44747 Msa1400940:exon
CTCCAAGTAGCTTCTAACGG+AGG 0.681992 tig0022494:+45005 None:intergenic
AGGCTAGTACATGAACCCCA+CGG 0.706623 tig0022494:-44814 Msa1400940:CDS
ATAATCATGATAGATTTCTG+GGG 0.708208 tig0022494:+45317 None:intergenic
TGCCAACATATGAATCACGG+CGG 0.717560 tig0022494:+45785 None:intergenic
AATCAAAAGAGGTGGCACCA+CGG 0.732628 tig0022494:-45385 Msa1400940:CDS
AAATCACCAAAATAGCCGTG+GGG 0.760400 tig0022494:+44799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTCAGTTTATTATTAT+GGG - tig0022494:44447-44466 Msa1400940:three_prime_UTR 10.0%
!! AAAAATATGTATTTATCTTC+AGG - tig0022494:47126-47145 Msa1400940:CDS 15.0%
!!! ATTTTGCAAAATTTACATCA+TGG - tig0022494:44896-44915 Msa1400940:CDS 20.0%
!!! TTAATACATGTACTTTTTGT+TGG - tig0022494:45401-45420 Msa1400940:CDS 20.0%
!! TATAATCATGATAGATTTCT+GGG + tig0022494:46462-46481 None:intergenic 20.0%
!! TTTCATTACTTAATACTCAT+TGG - tig0022494:46703-46722 Msa1400940:CDS 20.0%
!!! TTTTTGAAATAATTCTTCAG+AGG - tig0022494:47096-47115 Msa1400940:CDS 20.0%
!! ATTCTAACATTAGTTAAAAC+AGG + tig0022494:47208-47227 None:intergenic 20.0%
!!! TGTTTTAACTAATGTTAGAA+TGG - tig0022494:47207-47226 Msa1400940:CDS 20.0%
!!! GTTTTAACTAATGTTAGAAT+GGG - tig0022494:47208-47227 Msa1400940:CDS 20.0%
! ATGAAAATTATGTGCATGTT+TGG - tig0022494:44834-44853 Msa1400940:CDS 25.0%
! ACACAAAATAACACATCAAT+TGG + tig0022494:44983-45002 None:intergenic 25.0%
!!! TGTGTGTGTATGTTTTTTTT+AGG - tig0022494:44998-45017 Msa1400940:CDS 25.0%
! TCACTTTCAGAATAAAAATG+AGG - tig0022494:45268-45287 Msa1400940:intron 25.0%
! AGAAGGATGAATTTAATACA+TGG - tig0022494:45425-45444 Msa1400940:CDS 25.0%
!! TGGATTATTTCATTCTTTTC+AGG - tig0022494:46297-46316 Msa1400940:intron 25.0%
! ATAATCATGATAGATTTCTG+GGG + tig0022494:46461-46480 None:intergenic 25.0%
! CTATAATCATGATAGATTTC+TGG + tig0022494:46463-46482 None:intergenic 25.0%
! CAGAAATCTATCATGATTAT+AGG - tig0022494:46461-46480 Msa1400940:intron 25.0%
! GAAAAAAGATATTAGCAATG+TGG + tig0022494:46662-46681 None:intergenic 25.0%
! TAATGAATTCACTTGACATT+GGG + tig0022494:46813-46832 None:intergenic 25.0%
! TGAATTCATTACATGCAAAA+GGG - tig0022494:46822-46841 Msa1400940:intron 25.0%
!!! TATTTTGGTGATTTCTTTGA+TGG - tig0022494:46985-47004 Msa1400940:intron 25.0%
!! CTTTTATGTACTGTAAATTC+TGG - tig0022494:47232-47251 Msa1400940:exon 25.0%
ATTATTATGGGACAATGTGT+TGG - tig0022494:44459-44478 Msa1400940:three_prime_UTR 30.0%
TTATTATGGGACAATGTGTT+GGG - tig0022494:44460-44479 Msa1400940:three_prime_UTR 30.0%
CAAGCATTAAGTTTGTCATT+AGG + tig0022494:44686-44705 None:intergenic 30.0%
ATATACACACTAAACTACCT+TGG + tig0022494:44754-44773 None:intergenic 30.0%
TATATGTATGTATGTCTGTG+TGG - tig0022494:44769-44788 Msa1400940:CDS 30.0%
! CATGCACATAATTTTCATCT+GGG + tig0022494:44832-44851 None:intergenic 30.0%
! ACATGCACATAATTTTCATC+TGG + tig0022494:44833-44852 None:intergenic 30.0%
TTGCAAAATTTACATCATGG+TGG - tig0022494:44899-44918 Msa1400940:CDS 30.0%
AATAAAATCAGATGCTACCT+TGG - tig0022494:45067-45086 Msa1400940:intron 30.0%
AGTTGGATTGATAGATACAT+CGG - tig0022494:45167-45186 Msa1400940:intron 30.0%
TTGCAAGTTTCAGATTCATA+TGG + tig0022494:45307-45326 None:intergenic 30.0%
!! ATGTACTTTTTGTTGGTAGA+AGG - tig0022494:45408-45427 Msa1400940:CDS 30.0%
GAAAATCACTTCAATAGAAC+AGG + tig0022494:45482-45501 None:intergenic 30.0%
! AGCTAATGTGATAATGTTGT+TGG - tig0022494:45525-45544 Msa1400940:intron 30.0%
TGAACTTTATAAGAACACCA+AGG - tig0022494:45709-45728 Msa1400940:CDS 30.0%
AATACAAACTCATTAGTAGC+TGG + tig0022494:45776-45795 None:intergenic 30.0%
ACACACATTTAAGAAATGCA+GGG + tig0022494:46199-46218 None:intergenic 30.0%
CTTAAATGTGTGTGCATATA+TGG - tig0022494:46206-46225 Msa1400940:CDS 30.0%
AAGCTTACTTTACTTGAAAG+GGG + tig0022494:46254-46273 None:intergenic 30.0%
CAAGCTTACTTTACTTGAAA+GGG + tig0022494:46255-46274 None:intergenic 30.0%
ACAAGCTTACTTTACTTGAA+AGG + tig0022494:46256-46275 None:intergenic 30.0%
!!! TCATTCTTTTCAGGTTTATG+AGG - tig0022494:46306-46325 Msa1400940:intron 30.0%
TCATCTCTTTAAATGCTTGA+AGG + tig0022494:46342-46361 None:intergenic 30.0%
TTCAAGCATTTAAAGAGATG+AGG - tig0022494:46341-46360 Msa1400940:intron 30.0%
TTAAAGAGATGAGGAAAAAG+AGG - tig0022494:46350-46369 Msa1400940:intron 30.0%
TAAAGAGATGAGGAAAAAGA+GGG - tig0022494:46351-46370 Msa1400940:intron 30.0%
! ATCACAATTTAAAACCTCTG+TGG + tig0022494:46494-46513 None:intergenic 30.0%
AACATTTCTCAGCAAAATCA+AGG + tig0022494:46535-46554 None:intergenic 30.0%
CTGAGAAATGTTGTCAAATA+TGG - tig0022494:46543-46562 Msa1400940:intron 30.0%
! CTAGACACAGTTCTAATAAA+AGG + tig0022494:46638-46657 None:intergenic 30.0%
GTAATGAATTCACTTGACAT+TGG + tig0022494:46814-46833 None:intergenic 30.0%
GTGAATTCATTACATGCAAA+AGG - tig0022494:46821-46840 Msa1400940:intron 30.0%
TTGACAAAGAGCAAATTCAT+AGG - tig0022494:46875-46894 Msa1400940:intron 30.0%
TGACAAAGAGCAAATTCATA+GGG - tig0022494:46876-46895 Msa1400940:intron 30.0%
TCAAAGTTTGACAGAACTTA+TGG + tig0022494:47263-47282 None:intergenic 30.0%
GAGAAAAGAAGAGGGAATAA+TGG - tig0022494:44565-44584 Msa1400940:three_prime_UTR 35.0%
GATGAGAGTTGAAGATCTAT+GGG - tig0022494:44637-44656 Msa1400940:three_prime_UTR 35.0%
!! TGATTGGTTTGTCAGAATCA+TGG + tig0022494:44929-44948 None:intergenic 35.0%
!! AGTTTGCTGGAATTGTTGTA+TGG - tig0022494:45198-45217 Msa1400940:intron 35.0%
! TGTTGTATGGATTTTGCATC+AGG - tig0022494:45211-45230 Msa1400940:intron 35.0%
!! AAAAGTATTTCCGTTTGCTG+CGG + tig0022494:45612-45631 None:intergenic 35.0%
!!! AACTTCTGGAAACTTTTTCG+AGG - tig0022494:45673-45692 Msa1400940:intron 35.0%
TAGACATTGCAAAACAACCT+TGG + tig0022494:45729-45748 None:intergenic 35.0%
!!! TAGCTAACTTTTTCGCAAAC+AGG - tig0022494:45808-45827 Msa1400940:CDS 35.0%
AAACAGGTTCGAGATATTTC+AGG - tig0022494:45824-45843 Msa1400940:CDS 35.0%
AACAGGTTCGAGATATTTCA+GGG - tig0022494:45825-45844 Msa1400940:CDS 35.0%
TTCTGCCAACATATGAATCA+CGG + tig0022494:45996-46015 None:intergenic 35.0%
ACTTCAATGGTTCGAAAGTT+GGG - tig0022494:46024-46043 Msa1400940:intron 35.0%
TGCAGAATTCATACTTGACA+AGG + tig0022494:46146-46165 None:intergenic 35.0%
CACACACATTTAAGAAATGC+AGG + tig0022494:46200-46219 None:intergenic 35.0%
GATCTTGATGAACTTGACAA+TGG - tig0022494:46277-46296 Msa1400940:intron 35.0%
TCTTTAAATGCTTGAAGGAC+TGG + tig0022494:46337-46356 None:intergenic 35.0%
TGACAGAACTATTACAGTGA+AGG - tig0022494:46738-46757 Msa1400940:intron 35.0%
AATTCATAGGGTCTATGTTG+TGG - tig0022494:46888-46907 Msa1400940:intron 35.0%
! TTAGTGTGATTAGTCCTTCA+AGG + tig0022494:46927-46946 None:intergenic 35.0%
CACTAAGAGATATCATCTCA+AGG - tig0022494:46941-46960 Msa1400940:intron 35.0%
GTTCACCTTATTATGACTAG+CGG - tig0022494:47314-47333 Msa1400940:five_prime_UTR 35.0%
TCTTTCCGCTAGTCATAATA+AGG + tig0022494:47322-47341 None:intergenic 35.0%
ACACAGAGAGAGAAAAGAAG+AGG - tig0022494:44556-44575 Msa1400940:three_prime_UTR 40.0%
CACAGAGAGAGAAAAGAAGA+GGG - tig0022494:44557-44576 Msa1400940:three_prime_UTR 40.0%
AGAAGAGGGAATAATGGCAA+TGG - tig0022494:44571-44590 Msa1400940:three_prime_UTR 40.0%
TTCAACTCTCATCCCAAGTT+TGG + tig0022494:44630-44649 None:intergenic 40.0%
GGATGAGAGTTGAAGATCTA+TGG - tig0022494:44636-44655 Msa1400940:three_prime_UTR 40.0%
AGATCTATGGGATGTTCAAG+AGG - tig0022494:44649-44668 Msa1400940:three_prime_UTR 40.0%
! AAACTACCTTGGTTTGAAGC+AGG + tig0022494:44743-44762 None:intergenic 40.0%
TCTGACAAACCAATCAACTG+TGG - tig0022494:44933-44952 Msa1400940:CDS 40.0%
TGTTTGGTACCACAGTTGAT+TGG + tig0022494:44945-44964 None:intergenic 40.0%
GTCACATACACATGCATGTT+TGG + tig0022494:44961-44980 None:intergenic 40.0%
! TATTTTCACAGCTTCAGCCA+AGG + tig0022494:45087-45106 None:intergenic 40.0%
GGCTGAAGCTGTGAAAATAT+TGG - tig0022494:45088-45107 Msa1400940:intron 40.0%
TCAATCCAACTAGCATCTTC+AGG + tig0022494:45158-45177 None:intergenic 40.0%
ATCGGAATAGTTGAGTTTGC+TGG - tig0022494:45185-45204 Msa1400940:intron 40.0%
ATATTTCAGGGACATTCCGA+TGG - tig0022494:45837-45856 Msa1400940:CDS 40.0%
TATTTCAGGGACATTCCGAT+GGG - tig0022494:45838-45857 Msa1400940:CDS 40.0%
GATCTCTCCAAAGCAAGAAA+CGG + tig0022494:45866-45885 None:intergenic 40.0%
!! CAAAATGAAGAGTGTTCCTG+TGG - tig0022494:45925-45944 Msa1400940:CDS 40.0%
ACTTTCGAACCATTGAAGTC+CGG + tig0022494:46023-46042 None:intergenic 40.0%
GACTTCAATGGTTCGAAAGT+TGG - tig0022494:46023-46042 Msa1400940:intron 40.0%
CTTCAATGGTTCGAAAGTTG+GGG - tig0022494:46025-46044 Msa1400940:intron 40.0%
ACCAAGGAACTATCTGATGT+TGG - tig0022494:46049-46068 Msa1400940:intron 40.0%
ACCAACATCAGATAGTTCCT+TGG + tig0022494:46053-46072 None:intergenic 40.0%
!! CACACCTTGATGATCTGTTT+TGG + tig0022494:46091-46110 None:intergenic 40.0%
GACAAGGTTCAATGCAATGA+GGG + tig0022494:46130-46149 None:intergenic 40.0%
TGACAAGGTTCAATGCAATG+AGG + tig0022494:46131-46150 None:intergenic 40.0%
TTATAGGTATGTCACCACAG+AGG - tig0022494:46477-46496 Msa1400940:intron 40.0%
CTCAGCAAAATCAAGGATTG+TGG + tig0022494:46528-46547 None:intergenic 40.0%
GTTGTCAAATATGGCTGATG+CGG - tig0022494:46552-46571 Msa1400940:intron 40.0%
CTTCTCCAAGTAGCTTCTAA+CGG + tig0022494:46776-46795 None:intergenic 40.0%
TCTATGTTGTGGACGATGAT+GGG - tig0022494:46899-46918 Msa1400940:intron 40.0%
AAATCACCAAAATAGCCGTG+GGG + tig0022494:46979-46998 None:intergenic 40.0%
GAAATCACCAAAATAGCCGT+GGG + tig0022494:46980-46999 None:intergenic 40.0%
AGAAATCACCAAAATAGCCG+TGG + tig0022494:46981-47000 None:intergenic 40.0%
TGTTAAACCCTGCTATTAGC+AGG + tig0022494:47024-47043 None:intergenic 40.0%
ATAGCAGGGTTTAACAGACA+TGG - tig0022494:47028-47047 Msa1400940:intron 40.0%
! CAGGTTGAAGATGTGTATCT+AGG - tig0022494:47145-47164 Msa1400940:CDS 40.0%
CTACAATGAGAGAGATGCCA+AGG - tig0022494:44594-44613 Msa1400940:three_prime_UTR 45.0%
GGCAAAGGAAAAGCAGAAAC+AGG + tig0022494:44722-44741 None:intergenic 45.0%
TATTCTGAGTGCACCTGTTG+TGG - tig0022494:45121-45140 Msa1400940:intron 45.0%
ATGCACCTGAAGATGCTAGT+TGG - tig0022494:45150-45169 Msa1400940:intron 45.0%
CTTAGAAAGCAGCAAGAGCA+TGG + tig0022494:45903-45922 None:intergenic 45.0%
AGTGTTCCTGTGGTAGACTT+GGG - tig0022494:45935-45954 Msa1400940:CDS 45.0%
TGCCAACATATGAATCACGG+CGG + tig0022494:45993-46012 None:intergenic 45.0%
CATATGTTGGCAGAATGTGC+CGG - tig0022494:46001-46020 Msa1400940:intron 45.0%
!!! ATCTGTTTTGGCGTCACAAG+GGG + tig0022494:46079-46098 None:intergenic 45.0%
!!! GATCTGTTTTGGCGTCACAA+GGG + tig0022494:46080-46099 None:intergenic 45.0%
!!! TGATCTGTTTTGGCGTCACA+AGG + tig0022494:46081-46100 None:intergenic 45.0%
GACGCCAAAACAGATCATCA+AGG - tig0022494:46084-46103 Msa1400940:CDS 45.0%
GAGATGAGGAAAAAGAGGGT+TGG - tig0022494:46355-46374 Msa1400940:intron 45.0%
ATGAGGAAAAAGAGGGTTGG+AGG - tig0022494:46358-46377 Msa1400940:intron 45.0%
TGAGGAAAAAGAGGGTTGGA+GGG - tig0022494:46359-46378 Msa1400940:intron 45.0%
GTGCCTGTAATCAAAAGAGG+TGG - tig0022494:46382-46401 Msa1400940:intron 45.0%
!! GTGCCACCTCTTTTGATTAC+AGG + tig0022494:46388-46407 None:intergenic 45.0%
AATCAAAAGAGGTGGCACCA+CGG - tig0022494:46390-46409 Msa1400940:intron 45.0%
GCTTATATTACCAACTGCCG+TGG + tig0022494:46410-46429 None:intergenic 45.0%
GATGTCTTTGACCGTGATTG+AGG + tig0022494:46578-46597 None:intergenic 45.0%
AAGGTCTGCATCCACAATTC+AGG + tig0022494:46619-46638 None:intergenic 45.0%
GTCTATGTTGTGGACGATGA+TGG - tig0022494:46898-46917 Msa1400940:intron 45.0%
! AGTTTGGCTTCTGGACTCCT+TGG + tig0022494:44614-44633 None:intergenic 50.0%
AGGAGTCCAGAAGCCAAACT+TGG - tig0022494:44614-44633 Msa1400940:three_prime_UTR 50.0%
GGAGTCCAGAAGCCAAACTT+GGG - tig0022494:44615-44634 Msa1400940:three_prime_UTR 50.0%
! CTCATCCCAAGTTTGGCTTC+TGG + tig0022494:44623-44642 None:intergenic 50.0%
! CCTTGGTTTGAAGCAGGCAA+AGG + tig0022494:44737-44756 None:intergenic 50.0%
CCTTTGCCTGCTTCAAACCA+AGG - tig0022494:44734-44753 Msa1400940:three_prime_UTR 50.0%
GGTGCATCAACATCCACAAC+AGG + tig0022494:45137-45156 None:intergenic 50.0%
! TTGGAGTGGATGGACTCCTA+GGG + tig0022494:45568-45587 None:intergenic 50.0%
! GCAATAGCACTTGCACTGGT+TGG + tig0022494:45587-45606 None:intergenic 50.0%
AAGCAAGAAACGGAGCCCAT+CGG + tig0022494:45856-45875 None:intergenic 50.0%
ATGGGCTCCGTTTCTTGCTT+TGG - tig0022494:45856-45875 Msa1400940:CDS 50.0%
GAGTGTTCCTGTGGTAGACT+TGG - tig0022494:45934-45953 Msa1400940:CDS 50.0%
ACCCGCCGTGATTCATATGT+TGG - tig0022494:45988-46007 Msa1400940:intron 50.0%
GCCAACATATGAATCACGGC+GGG + tig0022494:45992-46011 None:intergenic 50.0%
CAGAATGTGCCGGACTTCAA+TGG - tig0022494:46011-46030 Msa1400940:intron 50.0%
GTTCGAAAGTTGGGGAACCA+AGG - tig0022494:46033-46052 Msa1400940:intron 50.0%
GAGGAAAAAGAGGGTTGGAG+GGG - tig0022494:46360-46379 Msa1400940:intron 50.0%
! GGGGTGCCTGTAATCAAAAG+AGG - tig0022494:46379-46398 Msa1400940:intron 50.0%
ACAATTCAGGTCGTGACGCA+AGG + tig0022494:46606-46625 None:intergenic 50.0%
TTGCGTCACGACCTGAATTG+TGG - tig0022494:46605-46624 Msa1400940:CDS 50.0%
AGTAGCTTCTAACGGAGGTC+AGG + tig0022494:46768-46787 None:intergenic 50.0%
GACCTCCGTTAGAAGCTACT+TGG - tig0022494:46768-46787 Msa1400940:intron 50.0%
CTCCAAGTAGCTTCTAACGG+AGG + tig0022494:46773-46792 None:intergenic 50.0%
!! GACGATGATGGGAACCTTGA+AGG - tig0022494:46910-46929 Msa1400940:intron 50.0%
AGGCTAGTACATGAACCCCA+CGG - tig0022494:46961-46980 Msa1400940:intron 50.0%
! CATGAACCCCACGGCTATTT+TGG - tig0022494:46970-46989 Msa1400940:intron 50.0%
TCCCTCTACCTGCTAATAGC+AGG - tig0022494:47013-47032 Msa1400940:intron 50.0%
CCCTGCTATTAGCAGGTAGA+GGG + tig0022494:47017-47036 None:intergenic 50.0%
CCCTCTACCTGCTAATAGCA+GGG - tig0022494:47014-47033 Msa1400940:intron 50.0%
ACCCTGCTATTAGCAGGTAG+AGG + tig0022494:47018-47037 None:intergenic 50.0%
AGTCTGAACCTCCATCCCCT+AGG - tig0022494:45549-45568 Msa1400940:intron 55.0%
! TGGAGTGGATGGACTCCTAG+GGG + tig0022494:45567-45586 None:intergenic 55.0%
! GTTGGAGTGGATGGACTCCT+AGG + tig0022494:45569-45588 None:intergenic 55.0%
!! CTTGCACTGGTTGGAGTGGA+TGG + tig0022494:45578-45597 None:intergenic 55.0%
!! AGCACTTGCACTGGTTGGAG+TGG + tig0022494:45582-45601 None:intergenic 55.0%
GGCTGCAATAGCACTTGCAC+TGG + tig0022494:45591-45610 None:intergenic 55.0%
GCTATTGCAGCCGCAGCAAA+CGG - tig0022494:45599-45618 Msa1400940:intron 55.0%
GCTCGAGAACTCGAAGCCTT+AGG - tig0022494:45632-45651 Msa1400940:intron 55.0%
GAACTCGAAGCCTTAGGCCT+CGG - tig0022494:45638-45657 Msa1400940:intron 55.0%
AAGTTGTCGCTGCAGATCCG+AGG + tig0022494:45658-45677 None:intergenic 55.0%
GGATCTGCAGCGACAACTTC+TGG - tig0022494:45659-45678 Msa1400940:intron 55.0%
! GATGGACTCCTAGGGGATGG+AGG + tig0022494:45560-45579 None:intergenic 60.0%
! GTGGATGGACTCCTAGGGGA+TGG + tig0022494:45563-45582 None:intergenic 60.0%
CCAGCACCCAAGTCTACCAC+AGG + tig0022494:45944-45963 None:intergenic 60.0%
CCTGTGGTAGACTTGGGTGC+TGG - tig0022494:45941-45960 Msa1400940:CDS 60.0%
GGCTGATGCGGCCTCAATCA+CGG - tig0022494:46564-46583 Msa1400940:intron 60.0%
CGCTGCAGATCCGAGGCCTA+AGG + tig0022494:45651-45670 None:intergenic 65.0%
AGAGGTGGCACCACGGCAGT+TGG - tig0022494:46397-46416 Msa1400940:intron 65.0%
Chromosome Type Strat End Strand Name
tig0022494 gene 44447 47350 44447 ID=Msa1400940;Name=Msa1400940
tig0022494 mRNA 44447 47350 44447 ID=Msa1400940-mRNA-1;Parent=Msa1400940;Name=Msa1400940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=101|1|1|1|1|1|6|309|432
tig0022494 exon 44447 45053 44447 ID=Msa1400940-mRNA-1:exon:18032;Parent=Msa1400940-mRNA-1
tig0022494 exon 45315 45478 45315 ID=Msa1400940-mRNA-1:exon:18031;Parent=Msa1400940-mRNA-1
tig0022494 exon 45692 45967 45692 ID=Msa1400940-mRNA-1:exon:18030;Parent=Msa1400940-mRNA-1
tig0022494 exon 46067 46246 46067 ID=Msa1400940-mRNA-1:exon:18029;Parent=Msa1400940-mRNA-1
tig0022494 exon 46565 46737 46565 ID=Msa1400940-mRNA-1:exon:18028;Parent=Msa1400940-mRNA-1
tig0022494 exon 47042 47350 47042 ID=Msa1400940-mRNA-1:exon:18027;Parent=Msa1400940-mRNA-1
tig0022494 five_prime_UTR 47250 47350 47250 ID=Msa1400940-mRNA-1:five_prime_utr;Parent=Msa1400940-mRNA-1
tig0022494 CDS 47042 47249 47042 ID=Msa1400940-mRNA-1:cds;Parent=Msa1400940-mRNA-1
tig0022494 CDS 46565 46737 46565 ID=Msa1400940-mRNA-1:cds;Parent=Msa1400940-mRNA-1
tig0022494 CDS 46067 46246 46067 ID=Msa1400940-mRNA-1:cds;Parent=Msa1400940-mRNA-1
tig0022494 CDS 45692 45967 45692 ID=Msa1400940-mRNA-1:cds;Parent=Msa1400940-mRNA-1
tig0022494 CDS 45315 45478 45315 ID=Msa1400940-mRNA-1:cds;Parent=Msa1400940-mRNA-1
tig0022494 CDS 44756 45053 44756 ID=Msa1400940-mRNA-1:cds;Parent=Msa1400940-mRNA-1
tig0022494 three_prime_UTR 44447 44755 44447 ID=Msa1400940-mRNA-1:three_prime_utr;Parent=Msa1400940-mRNA-1
Gene Sequence

>Msa1400940

ATGCAGTTACACAGAGAGAGAAAAGAAGAGGGAATAATGGCAATGGCTACAATGAGAGAGATGCCAAGGAGTCCAGAAGCCAAACTTGGGATGAGAGTTGAAGATCTATGGGATGTTCAAGAGGCACAATTAAGTCCTAATGACAAACTTAATGCTTGTTTTGAAAGCATACCTGTTTCTGCTTTTCCTTTGCCTGCTTCAAACCAAGAGATTGAAATAAAATCAGATGCTACCTTGGCTGAAGCTGTGAAAATATTGGCACGTCACAATATTCTGAGTGCACCTGTTGTGGATGTTGATGCACCTGAAGATGCTAGTTGGATTGATAGATACATCGGAATAGTTGAGTTTGCTGGAATTGTTGTATGGATTTTGCATCAGTCTGAACCTCCATCCCCTAGGAGTCCATCCACTCCAACCAGTGCAAGTGCTATTGCAGCCGCAGCAAACGGAAATACTTTTGCTCGAGAACTCGAAGCCTTAGGCCTCGGATCTGCAGCGACAACTTCTGGAAACTTTTTCGAGGATCTTACTTCTTCTGAACTTTATAAGAACACCAAGGTTCGAGATATTTCAGGGACATTCCGATGGGCTCCGTTTCTTGCTTTGGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCTAAGTACAAAATGAAGAGTGTTCCTGTGGTAGACTTGGGTGCTGGTACAATTGATAACATCATCACACAACCCGCCGTGATTCATATGTTGGCAGAATGTGCCGGACTTCAATGGTTCGAAAGTTGGGGAACCAAGGAACTATCTGATGTTGGTCTTCCCCTTGTGACGCCAAAACAGATCATCAAGGTTTATGAGGATGAACCAGTCCTTCAAGCATTTAAAGAGATGAGGAAAAAGAGGGTTGGAGGGGTGCCTGTAATCAAAAGAGGTGGCACCACGGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAACTGCCCCAGAAATCTATCATGATTATAGAACTATTACAGTGAAGGACTTCCTGACCTCCGTTAGAAGCTACTTGGAGAAGAATAAAAACGCATTCCCAATGTCAAGTGAATTCATTACATGCAAAAGGGACTGTACAGTGAAAGAGTTGATTCAATTGCTTGACAAAGAGCAAATTCATAGGGTCTATGTTGTGGACGATGATGGGAACCTTGAAGGACTAATCACACTAAGAGATATCATCTCAAGGCTAGTACATGAACCCCACGGCTATTTTGGTGATTTCTTTGATGGTGTTCTCCCTCTACCTGCTAATAGCAGGGTTTAA

Protein sequence

>Msa1400940

MQLHRERKEEGIMAMATMREMPRSPEAKLGMRVEDLWDVQEAQLSPNDKLNACFESIPVSAFPLPASNQEIEIKSDATLAEAVKILARHNILSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPPSPRSPSTPTSASAIAAAANGNTFARELEALGLGSAATTSGNFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGTIDNIITQPAVIHMLAECAGLQWFESWGTKELSDVGLPLVTPKQIIKVYEDEPVLQAFKEMRKKRVGGVPVIKRGGTTAVGNISLRDVQFLLTAPEIYHDYRTITVKDFLTSVRSYLEKNKNAFPMSSEFITCKRDCTVKELIQLLDKEQIHRVYVVDDDGNLEGLITLRDIISRLVHEPHGYFGDFFDGVLPLPANSRV*