AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0237240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237240 MtrunA17_Chr2g0286601 94.405 697 35 1 1 697 1 693 0.0 1362
Msa0237240 MtrunA17_Chr2g0286551 82.546 699 93 4 1 697 1 672 0.0 1144
Msa0237240 MtrunA17_Chr2g0286571 89.643 280 27 1 1 278 1 280 0.0 525
Msa0237240 MtrunA17_Chr3g0102001 36.694 744 400 20 5 693 18 745 1.52e-132 408
Msa0237240 MtrunA17_Chr5g0439061 34.672 747 397 18 9 693 23 740 1.46e-124 387
Msa0237240 MtrunA17_Chr2g0286561 87.317 205 26 0 493 697 14 218 4.82e-122 362
Msa0237240 MtrunA17_Chr3g0098481 45.425 306 159 4 395 693 37 341 9.94e-83 265
Msa0237240 MtrunA17_Chr2g0284501 27.059 680 430 10 13 676 18 647 8.14e-68 235
Msa0237240 MtrunA17_Chr3g0098531 42.606 284 154 5 417 693 12 293 4.01e-66 220
Msa0237240 MtrunA17_Chr3g0098301 39.203 301 175 4 395 688 103 402 4.69e-61 210
Msa0237240 MtrunA17_Chr5g0439051 53.000 200 93 1 494 693 20 218 2.10e-59 199
Msa0237240 MtrunA17_Chr5g0439081 47.423 194 100 1 496 689 18 209 1.04e-52 181
Msa0237240 MtrunA17_Chr2g0297701 33.663 303 195 3 381 679 265 565 3.35e-50 184
Msa0237240 MtrunA17_Chr2g0297701 28.641 206 137 3 9 214 48 243 2.46e-15 79.7
Msa0237240 MtrunA17_Chr5g0410271 37.201 293 173 4 375 657 15 306 4.78e-50 177
Msa0237240 MtrunA17_Chr5g0443001 34.948 289 187 1 394 682 313 600 1.93e-49 182
Msa0237240 MtrunA17_Chr5g0443001 24.107 224 156 3 5 218 21 240 6.24e-11 65.9
Msa0237240 MtrunA17_Chr5g0410201 35.390 308 194 4 375 679 16 321 3.62e-49 175
Msa0237240 MtrunA17_Chr5g0410171 36.149 296 171 4 394 679 440 727 3.12e-48 181
Msa0237240 MtrunA17_Chr5g0410171 25.221 226 140 8 16 219 133 351 3.04e-11 67.0
Msa0237240 MtrunA17_Chr6g0456141 33.333 315 196 5 373 682 75 380 7.25e-48 173
Msa0237240 MtrunA17_Chr5g0410461 34.494 316 190 4 373 679 151 458 2.24e-47 174
Msa0237240 MtrunA17_Chr2g0297491 33.016 315 193 6 382 692 78 378 2.33e-47 172
Msa0237240 MtrunA17_Chr5g0410341 36.177 293 176 4 375 657 434 725 4.89e-46 175
Msa0237240 MtrunA17_Chr5g0410341 26.457 223 136 8 5 207 119 333 3.31e-12 70.1
Msa0237240 MtrunA17_Chr2g0297481 33.779 299 190 5 382 679 176 467 8.94e-46 170
Msa0237240 MtrunA17_Chr2g0297691 35.417 288 183 3 394 679 401 687 4.44e-45 172
Msa0237240 MtrunA17_Chr2g0284541 35.093 322 201 5 372 693 331 644 9.66e-45 170
Msa0237240 MtrunA17_Chr2g0284541 25.214 234 148 6 13 228 8 232 2.67e-14 76.6
Msa0237240 MtrunA17_Chr2g0297651 33.439 314 193 6 382 692 391 691 1.75e-44 170
Msa0237240 MtrunA17_Chr5g0439071 26.930 531 328 13 12 495 26 543 2.74e-44 167
Msa0237240 MtrunA17_Chr5g0410371 36.207 290 173 5 394 675 1 286 4.27e-44 160
Msa0237240 MtrunA17_Chr2g0297681 34.983 303 182 6 394 692 399 690 9.25e-44 168
Msa0237240 MtrunA17_Chr6g0456101 32.390 318 201 5 373 685 432 740 2.37e-43 167
Msa0237240 MtrunA17_Chr3g0100301 38.776 196 120 0 482 677 208 403 3.79e-43 161
Msa0237240 MtrunA17_Chr6g0457101 29.936 314 209 4 377 685 380 687 2.32e-42 164
Msa0237240 MtrunA17_Chr2g0297711 30.796 289 190 4 397 679 238 522 2.92e-40 155
Msa0237240 MtrunA17_Chr2g0297711 35.833 120 71 2 9 127 51 165 1.64e-11 67.4
Msa0237240 MtrunA17_Chr5g0410191 38.587 184 112 1 496 679 4 186 8.49e-38 139
Msa0237240 MtrunA17_Chr5g0410581 34.520 281 172 5 394 665 499 776 1.20e-37 150
Msa0237240 MtrunA17_Chr3g0100741 29.181 281 198 1 394 674 308 587 4.28e-37 147
Msa0237240 MtrunA17_Chr3g0098541 30.556 360 199 12 35 367 2 337 1.81e-35 137
Msa0237240 MtrunA17_Chr3g0096941 28.114 281 201 1 394 674 309 588 9.89e-34 137
Msa0237240 MtrunA17_Chr3g0096941 25.359 209 142 3 2 200 20 224 1.47e-11 67.8
Msa0237240 MtrunA17_Chr5g0410541 38.816 152 92 1 496 647 25 175 1.28e-24 102
Msa0237240 MtrunA17_Chr5g0410511 33.333 183 112 3 493 671 5 181 2.76e-24 101
Msa0237240 MtrunA17_Chr5g0410451 31.915 188 124 2 496 679 43 230 1.73e-22 97.1
Msa0237240 MtrunA17_Chr5g0410181 37.398 123 70 1 553 668 2 124 4.58e-22 92.8
Msa0237240 MtrunA17_Chr3g0098291 33.673 196 122 5 14 204 32 224 4.65e-21 92.8
Msa0237240 MtrunA17_Chr5g0439021 36.306 157 96 2 12 164 26 182 9.30e-20 87.8
Msa0237240 MtrunA17_Chr5g0439041 31.579 152 97 2 351 495 18 169 1.44e-19 87.8
Msa0237240 MtrunA17_Chr3g0098511 38.776 98 58 1 598 693 1 98 9.51e-19 82.0
Msa0237240 MtrunA17_Chr1g0211531 25.338 296 210 7 397 684 243 535 5.29e-17 84.7
Msa0237240 MtrunA17_Chr1g0211531 27.027 185 126 5 13 195 27 204 5.00e-11 65.9
Msa0237240 MtrunA17_Chr3g0098521 32.903 155 98 3 14 165 1 152 9.98e-17 78.2
Msa0237240 MtrunA17_Chr3g0098491 32.468 154 98 3 14 164 1 151 8.18e-16 75.1
Msa0237240 MtrunA17_Chr1g0211541 23.197 319 232 7 382 697 207 515 9.91e-16 80.9
Msa0237240 MtrunA17_Chr2g0297611 37.778 90 55 1 500 589 1 89 9.07e-15 70.5
Msa0237240 MtrunA17_Chr5g0410211 27.000 200 125 5 28 212 3 196 5.50e-14 71.6
Msa0237240 MtrunA17_Chr5g0410291 26.923 182 115 6 42 212 17 191 2.76e-12 66.6
Msa0237240 MtrunA17_Chr2g0297521 35.366 82 52 1 489 570 4 84 1.40e-11 61.2
Msa0237240 MtrunA17_Chr1g0211511 24.038 312 224 7 384 686 7 314 2.67e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237240 AT3G18670.1 33.993 303 194 5 397 695 296 596 4.91e-48 179
Msa0237240 AT3G18670.1 27.313 227 155 4 9 230 53 274 1.78e-13 74.3
Msa0237240 AT3G18670.2 33.993 303 194 5 397 695 351 651 6.05e-48 179
Msa0237240 AT3G18670.2 28.910 211 143 3 9 214 53 261 1.63e-16 84.0
Msa0237240 AT5G35810.1 36.000 300 175 8 392 678 31 326 1.77e-45 166
Msa0237240 AT5G04730.1 34.768 302 184 5 381 675 285 580 3.21e-45 171
Msa0237240 AT5G04700.1 38.153 249 152 2 429 675 399 647 6.08e-43 165
Msa0237240 AT5G04690.1 34.572 269 171 4 431 696 359 625 4.71e-38 150
Msa0237240 AT3G54065.1 37.850 214 123 3 480 687 8 217 6.48e-38 141
Msa0237240 AT5G04690.3 34.572 269 171 4 431 696 379 645 6.87e-38 150
Msa0237240 AT5G04690.2 34.572 269 171 4 431 696 393 659 7.54e-38 150
Msa0237240 AT5G04680.2 35.271 258 155 4 429 675 263 519 4.09e-34 137
Msa0237240 AT5G04680.3 35.271 258 155 4 429 675 372 628 6.09e-34 138
Msa0237240 AT5G04680.4 35.271 258 155 4 429 675 386 642 6.88e-34 138
Msa0237240 AT5G04680.1 35.271 258 155 4 429 675 415 671 1.19e-33 137

Find 147 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGGCACTTCAAATAAT+TGG 0.180342 2_2:-10318395 Msa0237240:CDS
AACCATTGCTCGCGAAATTT+TGG 0.216103 2_2:-10317631 Msa0237240:intron
ATCTTTGCCTCCAATACTTC+AGG 0.230897 2_2:+10318985 None:intergenic
CAGACATGTTGCAGCATATA+TGG 0.231231 2_2:+10315232 None:intergenic
GAACAAGAATGTTGTTCTTT+TGG 0.248304 2_2:-10316367 Msa0237240:CDS
AGTCCTCATGTTGAAGAATT+TGG 0.251360 2_2:-10316564 Msa0237240:CDS
TTTCTATGAACGTTATAATA+AGG 0.259052 2_2:-10315690 Msa0237240:CDS
CCTTCATATCTTTGTTGAAT+AGG 0.261530 2_2:-10317827 Msa0237240:CDS
AACCCTACAAGAAGCTTTCT+TGG 0.265236 2_2:+10315350 None:intergenic
TTATAACGTTCATAGAAATT+AGG 0.268291 2_2:+10315695 None:intergenic
TGCATCTTGCTGCTACTTAT+AGG 0.285788 2_2:-10316242 Msa0237240:CDS
TGAGCAAGATTCTGCAGTTT+TGG 0.300345 2_2:+10315595 None:intergenic
GTGCAGCTTCCAAAACAATT+AGG 0.314136 2_2:+10318302 None:intergenic
GCTAGGAAGCCTAATTGTTT+TGG 0.323574 2_2:-10318311 Msa0237240:CDS
ACAATTTCATCTTATCTTGT+TGG 0.333720 2_2:-10314872 Msa0237240:three_prime_UTR
TTGTAAAAGAAGGTAGTAAA+TGG 0.341101 2_2:-10315622 Msa0237240:CDS
TCTGTACTTTGATCTGAGTT+TGG 0.341942 2_2:-10315177 Msa0237240:CDS
GCAACTTTAAGAGGCCCTTT+TGG 0.348806 2_2:-10314960 Msa0237240:three_prime_UTR
ACCAAAGTATTCACTGGATA+TGG 0.355789 2_2:+10318600 None:intergenic
AATGAGGATGGGATCTCTTC+TGG 0.357932 2_2:+10318774 None:intergenic
CATCACTATCCATTGAACTA+TGG 0.365853 2_2:-10317861 Msa0237240:CDS
TGGTTAGCTAGCTCTTAAAA+TGG 0.369012 2_2:-10319088 Msa0237240:exon
TTACCAAGAAAGCTTCTTGT+AGG 0.369536 2_2:-10315353 Msa0237240:CDS
GATAAACTGCAAATCTCATC+TGG 0.369859 2_2:+10315255 None:intergenic
GGATGTTCCTGCACATATCT+TGG 0.372166 2_2:+10318878 None:intergenic
TATACAGTTTGTTAAATAAG+AGG 0.373856 2_2:-10316320 Msa0237240:CDS
TTCAAACCGAGATGTGAGTA+TGG 0.377547 2_2:+10315397 None:intergenic
ATCACTGGTTCCCACCCAAT+TGG 0.380459 2_2:-10317071 Msa0237240:CDS
TGTGAAATCATACTTGTATA+AGG 0.382875 2_2:+10316593 None:intergenic
TTTACAGCGTTCACAAGCTT+TGG 0.387759 2_2:+10318365 None:intergenic
GAAGAATTTGGTGGTGGTGG+TGG 0.390543 2_2:-10316552 Msa0237240:CDS
GTCTGCAAGTGTTCATTGTT+AGG 0.397301 2_2:+10315028 None:intergenic
TCATTGTTAGGAGATATCTA+AGG 0.398711 2_2:+10315040 None:intergenic
CACATCTATAGCATCTGTTC+TGG 0.402327 2_2:-10315315 Msa0237240:CDS
TCGGATCATGGATTCCCAAT+TGG 0.407165 2_2:+10317056 None:intergenic
AGGCAATATGCAACTTTAAG+AGG 0.409530 2_2:-10314969 Msa0237240:three_prime_UTR
GTTCTAACCATTGGAAAGCT+TGG 0.411070 2_2:-10319108 Msa0237240:five_prime_UTR
GTATGGAAAGAAACAAAATA+AGG 0.413629 2_2:+10315414 None:intergenic
CGGATCATGGATTCCCAATT+GGG 0.415680 2_2:+10317057 None:intergenic
CTTCATGTTGCAGCAGAGCT+TGG 0.417345 2_2:-10318823 Msa0237240:CDS
TATCTTAATTGCAGCAAAGA+TGG 0.421596 2_2:-10316457 Msa0237240:CDS
ATCTTTGCTGCAATTAAGAT+AGG 0.424483 2_2:+10316459 None:intergenic
TTCATGTTGCAGCAGAGCTT+GGG 0.430517 2_2:-10318822 Msa0237240:CDS
TAGTCTGAGTTTGTGCTTGA+AGG 0.435141 2_2:+10317886 None:intergenic
GATTCTTGATCAGGACCGCC+TGG 0.440459 2_2:+10315521 None:intergenic
CTTATAGGAGGTTTAAGCCT+TGG 0.448660 2_2:-10316227 Msa0237240:CDS
TTTCGTCAAGTTGATATCAA+TGG 0.450346 2_2:-10316276 Msa0237240:CDS
TCTTTGCCTCCAATACTTCA+GGG 0.455629 2_2:+10318986 None:intergenic
TTTAAGCCTTGGCGTGTGCC+TGG 0.460405 2_2:-10316216 Msa0237240:CDS
TCACTGGTTCCCACCCAATT+GGG 0.470490 2_2:-10317070 Msa0237240:CDS
TATGAACGTTATAATAAGGA+TGG 0.471736 2_2:-10315686 Msa0237240:CDS
CGAAATTTCGATAGGAAATG+AGG 0.474414 2_2:+10318758 None:intergenic
AAAATGAAGTTATTGAGAAG+AGG 0.477595 2_2:-10316494 Msa0237240:CDS
TGCATTTGCATCGCAGCACC+AGG 0.478373 2_2:+10316198 None:intergenic
GTTGAAGAATTTGGTGGTGG+TGG 0.479544 2_2:-10316555 Msa0237240:CDS
TACCGACACCGAAAATGATT+AGG 0.481204 2_2:+10317007 None:intergenic
ACCATATCCAGTGAATACTT+TGG 0.482222 2_2:-10318601 Msa0237240:intron
GGTATGCCGGATTCTTGATC+AGG 0.485024 2_2:+10315512 None:intergenic
TATGGAAAGAAACAAAATAA+GGG 0.487722 2_2:+10315415 None:intergenic
TTCTTTCCATACTCACATCT+CGG 0.490447 2_2:-10315403 Msa0237240:CDS
TTCTCTCCATTGCCCTCTCA+TGG 0.496208 2_2:+10319032 None:intergenic
CCTATTCAACAAAGATATGA+AGG 0.498588 2_2:+10317827 None:intergenic
GGCGGTCCTGATCAAGAATC+CGG 0.500801 2_2:-10315518 Msa0237240:CDS
ACACACAATGTTCTAACCAT+TGG 0.504628 2_2:-10319117 Msa0237240:five_prime_UTR
GTTCTGGTCTCATTCTGTGC+AGG 0.507575 2_2:-10315299 Msa0237240:CDS
CTAAGAATGCAAAACTCAAA+GGG 0.508121 2_2:-10318856 Msa0237240:CDS
TCCATTGCCCTCTCATGGCA+TGG 0.508412 2_2:+10319037 None:intergenic
TACCAAAATTTCGCGAGCAA+TGG 0.510348 2_2:+10317629 None:intergenic
CAAGTGGTGCGTGTGTATCA+AGG 0.510861 2_2:+10315642 None:intergenic
TTCATAGAAATTAGGTGGCA+TGG 0.511469 2_2:+10315703 None:intergenic
AGACATGTTGCAGCATATAT+GGG 0.513588 2_2:+10315233 None:intergenic
ACTTCTAATCCTTGCAATGA+AGG 0.515634 2_2:-10317034 Msa0237240:CDS
CCTAAGAATGCAAAACTCAA+AGG 0.517719 2_2:-10318857 Msa0237240:CDS
AGTCATCATCTTTGTTGTGT+TGG 0.519193 2_2:+10318665 None:intergenic
ATCTTAATTGCAGCAAAGAT+GGG 0.523320 2_2:-10316456 Msa0237240:CDS
CAAAATAAGGGCTGTGACGG+AGG 0.524058 2_2:+10315427 None:intergenic
ATTTCGATAGGAAATGAGGA+TGG 0.526430 2_2:+10318762 None:intergenic
AAGGATTAGAAGTCGGATCA+TGG 0.527536 2_2:+10317044 None:intergenic
ATGCATGTTCCATAGTTCAA+TGG 0.529696 2_2:+10317852 None:intergenic
ACATAAGCCAAGATATGTGC+AGG 0.531025 2_2:-10318885 Msa0237240:CDS
TACCAAGAAAGCTTCTTGTA+GGG 0.531662 2_2:-10315352 Msa0237240:CDS
CATTGTTAGGAGATATCTAA+GGG 0.536400 2_2:+10315041 None:intergenic
TTATACAAGTATGATTTCAC+AGG 0.538164 2_2:-10316591 Msa0237240:CDS
ACACTAACCAAAGTATTCAC+TGG 0.538217 2_2:+10318594 None:intergenic
AGTGCACAATGAGAACCAAA+AGG 0.538252 2_2:+10314945 None:intergenic
CACCTCTGCATATTCTTGCT+AGG 0.541079 2_2:-10318328 Msa0237240:CDS
TGAACAGCTGCCAAGAAAAG+AGG 0.541803 2_2:+10318724 None:intergenic
AGCTCTGCTGCAACATGAAG+AGG 0.542273 2_2:+10318826 None:intergenic
ATCTTGCTGCTACTTATAGG+AGG 0.551809 2_2:-10316239 Msa0237240:CDS
CACGCACCACTTGTAAAAGA+AGG 0.553960 2_2:-10315632 Msa0237240:CDS
AGTTATTGAGAAGAGGAGAA+TGG 0.554778 2_2:-10316487 Msa0237240:CDS
TTAGGAAGACCTTCATTGCA+AGG 0.555765 2_2:+10317025 None:intergenic
CATGTTGAAGAATTTGGTGG+TGG 0.560650 2_2:-10316558 Msa0237240:CDS
TCCACATCATGAATAGCCAC+AGG 0.562021 2_2:+10316396 None:intergenic
TTGGCTTATGTTATCTAACA+AGG 0.563339 2_2:+10318897 None:intergenic
GATCAAAGTACAGAGGGAGT+TGG 0.566389 2_2:+10315186 None:intergenic
AATTCTTCAACATGAGGACT+TGG 0.567474 2_2:+10316567 None:intergenic
TTGTTTAACCATGCCATGAG+AGG 0.567650 2_2:-10319045 Msa0237240:CDS
AAACAAAATAAGGGCTGTGA+CGG 0.571099 2_2:+10315424 None:intergenic
GTGCACAATGAGAACCAAAA+GGG 0.574034 2_2:+10314946 None:intergenic
GCTCTGCTGCAACATGAAGA+GGG 0.574081 2_2:+10318827 None:intergenic
GCAGCACCAGGCACACGCCA+AGG 0.574147 2_2:+10316210 None:intergenic
ATGTAGAGCAAGCGCAAGCA+AGG 0.575164 2_2:-10317107 Msa0237240:intron
TGTTTAACCATGCCATGAGA+GGG 0.575955 2_2:-10319044 Msa0237240:CDS
ATTTCCTATCGAAATTTCGA+AGG 0.577067 2_2:-10318754 Msa0237240:CDS
GAGTTTGGCTATGTGTCGGA+AGG 0.578667 2_2:-10315162 Msa0237240:CDS
ATGAACGTTATAATAAGGAT+GGG 0.580533 2_2:-10315685 Msa0237240:CDS
ACCGCCTGGGATAGCTGTTG+AGG 0.581995 2_2:+10315535 None:intergenic
ATCATGGATTCCCAATTGGG+TGG 0.589546 2_2:+10317060 None:intergenic
TTCGCCTTCGAAATTTCGAT+AGG 0.591191 2_2:+10318750 None:intergenic
TTCAATTGTTGATGAGAACA+AGG 0.592418 2_2:-10317922 Msa0237240:CDS
ATCTGAGTTTGGCTATGTGT+CGG 0.593043 2_2:-10315166 Msa0237240:CDS
TTTCGATAGGAAATGAGGAT+GGG 0.593948 2_2:+10318763 None:intergenic
ATTCTTGATCAGGACCGCCT+GGG 0.594512 2_2:+10315522 None:intergenic
AACTCAGATCAAAGTACAGA+GGG 0.594945 2_2:+10315180 None:intergenic
TAACGTTCATAGAAATTAGG+TGG 0.595282 2_2:+10315698 None:intergenic
TAGCTAACCAAGCTTTCCAA+TGG 0.596585 2_2:+10319101 None:intergenic
CCCTGTGGCTATTCATGATG+TGG 0.598098 2_2:-10316397 Msa0237240:CDS
TTTAACAAACTGTATACATG+AGG 0.601178 2_2:+10316327 None:intergenic
GTGGGAATACAAGTGGTACA+AGG 0.606330 2_2:-10316175 Msa0237240:intron
TCATGGATTCCCAATTGGGT+GGG 0.611555 2_2:+10317061 None:intergenic
TGCTGCGATGCAAATGCAGT+GGG 0.612632 2_2:-10316193 Msa0237240:CDS
ATAAACTGCAAATCTCATCT+GGG 0.613516 2_2:+10315256 None:intergenic
CCTCATGTTGAAGAATTTGG+TGG 0.614175 2_2:-10316561 Msa0237240:CDS
TCATTGCAAGGATTAGAAGT+CGG 0.619332 2_2:+10317037 None:intergenic
ACAGCATAGAGTTTGAAAGC+AGG 0.620300 2_2:+10315473 None:intergenic
AGAGAAAATCCAAAGGAGGA+AGG 0.622162 2_2:-10316667 Msa0237240:CDS
GCAGAGGTGATAATCCATCA+TGG 0.623629 2_2:+10318342 None:intergenic
CATTGACATAGGAGCAACAT+GGG 0.626539 2_2:-10316691 Msa0237240:intron
ACAACCTCAACAGCTATCCC+AGG 0.633602 2_2:-10315539 Msa0237240:CDS
CCACCAAATTCTTCAACATG+AGG 0.652444 2_2:+10316561 None:intergenic
GGGTAGAGAAAATCCAAAGG+AGG 0.656067 2_2:-10316671 Msa0237240:CDS
CTCTGCTGCAACATGAAGAG+GGG 0.656516 2_2:+10318828 None:intergenic
AAATGCAGTGGGAATACAAG+TGG 0.670083 2_2:-10316182 Msa0237240:CDS
ACCATGCCATGAGAGGGCAA+TGG 0.670926 2_2:-10319038 Msa0237240:CDS
AACACTTTGTAGCTGCGCTG+AGG 0.674861 2_2:+10315137 None:intergenic
GTGCTGCGATGCAAATGCAG+TGG 0.675008 2_2:-10316194 Msa0237240:CDS
AAACTCAGATCAAAGTACAG+AGG 0.675417 2_2:+10315179 None:intergenic
GCATTGACATAGGAGCAACA+TGG 0.681991 2_2:-10316692 Msa0237240:intron
GTGAACGCTGTAAACCATGA+TGG 0.682423 2_2:-10318356 Msa0237240:CDS
AACTGCAGAATCTTGCTCAG+TGG 0.683105 2_2:-10315591 Msa0237240:CDS
GTACAGAGGGAGTTGGACCA+AGG 0.683296 2_2:+10315193 None:intergenic
TTCCTAGCAAGAATATGCAG+AGG 0.691547 2_2:+10318326 None:intergenic
CATGGGTAGAGAAAATCCAA+AGG 0.708498 2_2:-10316674 Msa0237240:CDS
CCACATCATGAATAGCCACA+GGG 0.710076 2_2:+10316397 None:intergenic
GATTCTAGATATGTACCCTG+TGG 0.719569 2_2:-10316412 Msa0237240:CDS
ACCTCAACAGCTATCCCAGG+CGG 0.731295 2_2:-10315536 Msa0237240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTATTTAATTTTTACT+CGG - chr2_2:10316210-10316229 Msa0237240:CDS 10.0%
!!! TTTATTTTTCATTTAGTATA+TGG - chr2_2:10316774-10316793 Msa0237240:intron 10.0%
!! TAATTGATTAAATTATGTAT+GGG - chr2_2:10318203-10318222 Msa0237240:intron 10.0%
!!! GCAAATTATTTTATGAAATA+TGG - chr2_2:10315498-10315517 Msa0237240:CDS 15.0%
!! AATGTAATGAATTTATATGT+AGG - chr2_2:10315570-10315589 Msa0237240:CDS 15.0%
!!! TATATTTTTTCTTTTCAACA+AGG - chr2_2:10315774-10315793 Msa0237240:intron 15.0%
!! AATAATCATATAAACAATGT+AGG + chr2_2:10315804-10315823 None:intergenic 15.0%
!! ATTATAAAATAAAATCAGGT+TGG + chr2_2:10315836-10315855 None:intergenic 15.0%
!! TCACATTATAAAATAAAATC+AGG + chr2_2:10315840-10315859 None:intergenic 15.0%
!!! TGATTTTATTTTATAATGTG+AGG - chr2_2:10315839-10315858 Msa0237240:intron 15.0%
!!! TTTTAGATATGCTTTTATTA+TGG + chr2_2:10315913-10315932 None:intergenic 15.0%
!! TGTAAAAAAATTTATATCGA+CGG - chr2_2:10315967-10315986 Msa0237240:intron 15.0%
!! TGAATTTACAATATTTGAAA+TGG + chr2_2:10316522-10316541 None:intergenic 15.0%
!! AAATTACAGATAAATATGAT+TGG - chr2_2:10316607-10316626 Msa0237240:CDS 15.0%
!!! TGAAGAAATATTAAGTTTTA+GGG + chr2_2:10317133-10317152 None:intergenic 15.0%
!!! AATTTTTTTGTTTAACTGAA+TGG - chr2_2:10317272-10317291 Msa0237240:intron 15.0%
!! CATACATAATTTAATCAATT+AGG + chr2_2:10318204-10318223 None:intergenic 15.0%
!! CTAATTGATTAAATTATGTA+TGG - chr2_2:10318202-10318221 Msa0237240:intron 15.0%
!!! TAAGAAATTTTTTAAGTGTT+AGG - chr2_2:10318997-10319016 Msa0237240:CDS 15.0%
!! AATGAATTTATATGTAGGTT+TGG - chr2_2:10315575-10315594 Msa0237240:CDS 20.0%
!! AATTCAAAATTAATCTCTTC+CGG - chr2_2:10315999-10316018 Msa0237240:intron 20.0%
!! TAAAAGATGAAATTCAATTG+CGG + chr2_2:10316722-10316741 None:intergenic 20.0%
!!! GAAGAAATATTAAGTTTTAG+GGG + chr2_2:10317132-10317151 None:intergenic 20.0%
!!! GTGAAGAAATATTAAGTTTT+AGG + chr2_2:10317134-10317153 None:intergenic 20.0%
!! TATAGAATATAGACCATATA+AGG + chr2_2:10317169-10317188 None:intergenic 20.0%
!! CAGTTAAACAAAAAAATTAC+AGG + chr2_2:10317270-10317289 None:intergenic 20.0%
!!! TATACAGTTTGTTAAATAAG+AGG - chr2_2:10317666-10317685 Msa0237240:CDS 20.0%
!! GTTAAGATTTCTAATCTATT+AGG + chr2_2:10317854-10317873 None:intergenic 20.0%
!!! ATTTTTGTTGATCATGTTAT+TGG - chr2_2:10317887-10317906 Msa0237240:CDS 20.0%
!! TTATAACGTTCATAGAAATT+AGG + chr2_2:10318294-10318313 None:intergenic 20.0%
!! TTTCTATGAACGTTATAATA+AGG - chr2_2:10318296-10318315 Msa0237240:CDS 20.0%
!! TATGGAAAGAAACAAAATAA+GGG + chr2_2:10318574-10318593 None:intergenic 20.0%
!! TTGTAACATCACTTAATATA+TGG + chr2_2:10319082-10319101 None:intergenic 20.0%
! TCACTTTCAATCAAAAACAA+TGG - chr2_2:10315343-10315362 Msa0237240:CDS 25.0%
!! TCGTGTAATTTTTATGTGAT+CGG + chr2_2:10315428-10315447 None:intergenic 25.0%
! TGATACTGATAAGTGATAAA+TGG - chr2_2:10316022-10316041 Msa0237240:intron 25.0%
!! ATATACTGGCTATAACTATA+AGG + chr2_2:10316250-10316269 None:intergenic 25.0%
! AGAAAAATAGTAGACAAGTT+AGG + chr2_2:10316279-10316298 None:intergenic 25.0%
!! ATGATTTTTAATCGTAGTTG+TGG - chr2_2:10316569-10316588 Msa0237240:CDS 25.0%
! AGACCTCAAAAACATTAATA+TGG - chr2_2:10316670-10316689 Msa0237240:CDS 25.0%
!!! ACACCATATTAATGTTTTTG+AGG + chr2_2:10316676-10316695 None:intergenic 25.0%
! ACAGATCAGTAAAAATACAA+AGG - chr2_2:10316741-10316760 Msa0237240:intron 25.0%
! CAAAAACTGTTATATTTGCA+AGG + chr2_2:10317068-10317087 None:intergenic 25.0%
!! CTTGCAAATATAACAGTTTT+TGG - chr2_2:10317066-10317085 Msa0237240:CDS 25.0%
!!! CTTTAGAATTAGTCCTTATA+TGG - chr2_2:10317153-10317172 Msa0237240:intron 25.0%
! AATCCATCCATATAAGAATT+AGG - chr2_2:10317239-10317258 Msa0237240:intron 25.0%
! TTTCCTAATTCTTATATGGA+TGG + chr2_2:10317245-10317264 None:intergenic 25.0%
! TGTGAAATCATACTTGTATA+AGG + chr2_2:10317396-10317415 None:intergenic 25.0%
! TTATACAAGTATGATTTCAC+AGG - chr2_2:10317395-10317414 Msa0237240:intron 25.0%
! AAAATGAAGTTATTGAGAAG+AGG - chr2_2:10317492-10317511 Msa0237240:intron 25.0%
! TTTAACAAACTGTATACATG+AGG + chr2_2:10317662-10317681 None:intergenic 25.0%
! AAGATTTCTAATCTATTAGG+AGG + chr2_2:10317851-10317870 None:intergenic 25.0%
!! ATATTTTGTCTTGCATAAAG+TGG - chr2_2:10318051-10318070 Msa0237240:intron 25.0%
! TGGTTAATTAAATTGCTGAT+TGG - chr2_2:10318088-10318107 Msa0237240:intron 25.0%
! TAGTTACTCATAAAGTAAAG+TGG - chr2_2:10318126-10318145 Msa0237240:intron 25.0%
!!! TTGTATTTTTCAGCTTGTTA+AGG - chr2_2:10318257-10318276 Msa0237240:intron 25.0%
! TATGAACGTTATAATAAGGA+TGG - chr2_2:10318300-10318319 Msa0237240:CDS 25.0%
! ATGAACGTTATAATAAGGAT+GGG - chr2_2:10318301-10318320 Msa0237240:CDS 25.0%
! TTGTAAAAGAAGGTAGTAAA+TGG - chr2_2:10318364-10318383 Msa0237240:CDS 25.0%
! GTATGGAAAGAAACAAAATA+AGG + chr2_2:10318575-10318594 None:intergenic 25.0%
! ACAATTTCATCTTATCTTGT+TGG - chr2_2:10319114-10319133 Msa0237240:five_prime_UTR 25.0%
TTGGCTTATGTTATCTAACA+AGG + chr2_2:10315092-10315111 None:intergenic 30.0%
CTAAGAATGCAAAACTCAAA+GGG - chr2_2:10315130-10315149 Msa0237240:CDS 30.0%
ATTTCCTATCGAAATTTCGA+AGG - chr2_2:10315232-10315251 Msa0237240:CDS 30.0%
TTATCACTTATCAGTATCAC+CGG + chr2_2:10316021-10316040 None:intergenic 30.0%
! TTCAATTGTTGATGAGAACA+AGG - chr2_2:10316064-10316083 Msa0237240:intron 30.0%
CCTATTCAACAAAGATATGA+AGG + chr2_2:10316162-10316181 None:intergenic 30.0%
CCTTCATATCTTTGTTGAAT+AGG - chr2_2:10316159-10316178 Msa0237240:intron 30.0%
AAGTTAGGCTTGTAATATAC+TGG + chr2_2:10316264-10316283 None:intergenic 30.0%
TTCTGTTATATTACAGCAAC+AGG - chr2_2:10316295-10316314 Msa0237240:CDS 30.0%
! TACTAGTAGTTTTCATTTCG+TGG - chr2_2:10316546-10316565 Msa0237240:CDS 30.0%
TCTAATCATGATCGCAATTA+CGG + chr2_2:10316638-10316657 None:intergenic 30.0%
GGAAAGAAAAGAAAAATCAC+TGG - chr2_2:10316900-10316919 Msa0237240:intron 30.0%
! AAGGTCTTCCTAATCATTTT+CGG - chr2_2:10316971-10316990 Msa0237240:intron 30.0%
TCAAACTTTATTATGCCTCA+AGG + chr2_2:10317099-10317118 None:intergenic 30.0%
GGTCTATATTCTATAGACTA+AGG - chr2_2:10317174-10317193 Msa0237240:intron 30.0%
GGCATTTCCTAATTCTTATA+TGG + chr2_2:10317249-10317268 None:intergenic 30.0%
ATCTTTGCTGCAATTAAGAT+AGG + chr2_2:10317530-10317549 None:intergenic 30.0%
TATCTTAATTGCAGCAAAGA+TGG - chr2_2:10317529-10317548 Msa0237240:intron 30.0%
ATCTTAATTGCAGCAAAGAT+GGG - chr2_2:10317530-10317549 Msa0237240:intron 30.0%
! GAACAAGAATGTTGTTCTTT+TGG - chr2_2:10317619-10317638 Msa0237240:intron 30.0%
! TTCTTTTGGCCATAGAAAAT+AGG - chr2_2:10317633-10317652 Msa0237240:CDS 30.0%
!! TTTCGTCAAGTTGATATCAA+TGG - chr2_2:10317710-10317729 Msa0237240:intron 30.0%
! TTAATCAATGTCTCGTTTTG+TGG + chr2_2:10317957-10317976 None:intergenic 30.0%
! ACAAAACGAGACATTGATTA+AGG - chr2_2:10317956-10317975 Msa0237240:intron 30.0%
! AAGTGGATTTCATTGTAATC+TGG - chr2_2:10318068-10318087 Msa0237240:intron 30.0%
!! TTTTTGAGGGAAAAGTAAAG+TGG - chr2_2:10318166-10318185 Msa0237240:intron 30.0%
TAACGTTCATAGAAATTAGG+TGG + chr2_2:10318291-10318310 None:intergenic 30.0%
! TTACTACCTTCTTTTACAAG+TGG + chr2_2:10318363-10318382 None:intergenic 30.0%
ATAAACTGCAAATCTCATCT+GGG + chr2_2:10318733-10318752 None:intergenic 30.0%
CATTGTTAGGAGATATCTAA+GGG + chr2_2:10318948-10318967 None:intergenic 30.0%
TCATTGTTAGGAGATATCTA+AGG + chr2_2:10318949-10318968 None:intergenic 30.0%
ACACACAATGTTCTAACCAT+TGG - chr2_2:10314869-10314888 Msa0237240:three_prime_UTR 35.0%
! TGGTTAGCTAGCTCTTAAAA+TGG - chr2_2:10314898-10314917 Msa0237240:intron 35.0%
TGAGAAAAACCCTGAAGTAT+TGG - chr2_2:10314991-10315010 Msa0237240:three_prime_UTR 35.0%
AGGTTGTCACAAAAACTGTT+TGG + chr2_2:10315072-10315091 None:intergenic 35.0%
!! CCTTTGAGTTTTGCATTCTT+AGG + chr2_2:10315132-10315151 None:intergenic 35.0%
CCTAAGAATGCAAAACTCAA+AGG - chr2_2:10315129-10315148 Msa0237240:CDS 35.0%
TTTCGATAGGAAATGAGGAT+GGG + chr2_2:10315226-10315245 None:intergenic 35.0%
ATTTCGATAGGAAATGAGGA+TGG + chr2_2:10315227-10315246 None:intergenic 35.0%
CGAAATTTCGATAGGAAATG+AGG + chr2_2:10315231-10315250 None:intergenic 35.0%
! GATGCTTTCTTTTGTCTTCA+TGG - chr2_2:10315295-10315314 Msa0237240:CDS 35.0%
! AGTCATCATCTTTGTTGTGT+TGG + chr2_2:10315324-10315343 None:intergenic 35.0%
ACCATATCCAGTGAATACTT+TGG - chr2_2:10315385-10315404 Msa0237240:CDS 35.0%
! ACCAAAGTATTCACTGGATA+TGG + chr2_2:10315389-10315408 None:intergenic 35.0%
! ACACTAACCAAAGTATTCAC+TGG + chr2_2:10315395-10315414 None:intergenic 35.0%
GGTTTGGCACTTCAAATAAT+TGG - chr2_2:10315591-10315610 Msa0237240:CDS 35.0%
TGTAAGTAGCATCACTTACA+AGG - chr2_2:10315741-10315760 Msa0237240:intron 35.0%
AAGAAACAACCAAGTAACGT+GGG - chr2_2:10315886-10315905 Msa0237240:intron 35.0%
CATCACTATCCATTGAACTA+TGG - chr2_2:10316125-10316144 Msa0237240:intron 35.0%
ATGCATGTTCCATAGTTCAA+TGG + chr2_2:10316137-10316156 None:intergenic 35.0%
TCTATGTAAACGTACAGTAG+AGG + chr2_2:10316699-10316718 None:intergenic 35.0%
TCATTGCAAGGATTAGAAGT+CGG + chr2_2:10316952-10316971 None:intergenic 35.0%
ACTTCTAATCCTTGCAATGA+AGG - chr2_2:10316952-10316971 Msa0237240:intron 35.0%
!! TTCCTAATCATTTTCGGTGT+CGG - chr2_2:10316977-10316996 Msa0237240:intron 35.0%
ACAATGAGAAGACTAATGCA+TGG + chr2_2:10317014-10317033 None:intergenic 35.0%
!! GCATTAGTCTTCTCATTGTT+AGG - chr2_2:10317015-10317034 Msa0237240:CDS 35.0%
AAGGACGACAAAGATATTGA+AGG + chr2_2:10317049-10317068 None:intergenic 35.0%
!!! GTTTTTGGTTTTAGTCCTTG+AGG - chr2_2:10317081-10317100 Msa0237240:CDS 35.0%
!! TAACTGAATGGCATTGACAT+AGG - chr2_2:10317284-10317303 Msa0237240:intron 35.0%
AATTCTTCAACATGAGGACT+TGG + chr2_2:10317422-10317441 None:intergenic 35.0%
AGTCCTCATGTTGAAGAATT+TGG - chr2_2:10317422-10317441 Msa0237240:intron 35.0%
AGTTATTGAGAAGAGGAGAA+TGG - chr2_2:10317499-10317518 Msa0237240:intron 35.0%
! ATGAGGTTGCCTATTTTCTA+TGG + chr2_2:10317645-10317664 None:intergenic 35.0%
TGTAATCAGATTCGCAAAGT+TGG + chr2_2:10317925-10317944 None:intergenic 35.0%
AATTTGAGTCAAGTTCCACT+CGG - chr2_2:10317979-10317998 Msa0237240:intron 35.0%
!!! ATATAGTATTTTGGTCCGAG+TGG + chr2_2:10317997-10318016 None:intergenic 35.0%
TTCATAGAAATTAGGTGGCA+TGG + chr2_2:10318286-10318305 None:intergenic 35.0%
AAACAAAATAAGGGCTGTGA+CGG + chr2_2:10318565-10318584 None:intergenic 35.0%
TTCTTTCCATACTCACATCT+CGG - chr2_2:10318583-10318602 Msa0237240:intron 35.0%
TTACCAAGAAAGCTTCTTGT+AGG - chr2_2:10318633-10318652 Msa0237240:CDS 35.0%
TACCAAGAAAGCTTCTTGTA+GGG - chr2_2:10318634-10318653 Msa0237240:CDS 35.0%
GATAAACTGCAAATCTCATC+TGG + chr2_2:10318734-10318753 None:intergenic 35.0%
AGACATGTTGCAGCATATAT+GGG + chr2_2:10318756-10318775 None:intergenic 35.0%
AACTCAGATCAAAGTACAGA+GGG + chr2_2:10318809-10318828 None:intergenic 35.0%
AAACTCAGATCAAAGTACAG+AGG + chr2_2:10318810-10318829 None:intergenic 35.0%
TCTGTACTTTGATCTGAGTT+TGG - chr2_2:10318809-10318828 Msa0237240:CDS 35.0%
AGGCAATATGCAACTTTAAG+AGG - chr2_2:10319017-10319036 Msa0237240:CDS 35.0%
GTTCTAACCATTGGAAAGCT+TGG - chr2_2:10314878-10314897 Msa0237240:three_prime_UTR 40.0%
TAGCTAACCAAGCTTTCCAA+TGG + chr2_2:10314888-10314907 None:intergenic 40.0%
TTGTTTAACCATGCCATGAG+AGG - chr2_2:10314941-10314960 Msa0237240:three_prime_UTR 40.0%
TGTTTAACCATGCCATGAGA+GGG - chr2_2:10314942-10314961 Msa0237240:three_prime_UTR 40.0%
!! GAAAAACCCTGAAGTATTGG+AGG - chr2_2:10314994-10315013 Msa0237240:three_prime_UTR 40.0%
TCTTTGCCTCCAATACTTCA+GGG + chr2_2:10315003-10315022 None:intergenic 40.0%
ATCTTTGCCTCCAATACTTC+AGG + chr2_2:10315004-10315023 None:intergenic 40.0%
ACATAAGCCAAGATATGTGC+AGG - chr2_2:10315101-10315120 Msa0237240:intron 40.0%
TTCGCCTTCGAAATTTCGAT+AGG + chr2_2:10315239-10315258 None:intergenic 40.0%
TTTACAGCGTTCACAAGCTT+TGG + chr2_2:10315624-10315643 None:intergenic 40.0%
TTCCTAGCAAGAATATGCAG+AGG + chr2_2:10315663-10315682 None:intergenic 40.0%
! GCTAGGAAGCCTAATTGTTT+TGG - chr2_2:10315675-10315694 Msa0237240:CDS 40.0%
GTGCAGCTTCCAAAACAATT+AGG + chr2_2:10315687-10315706 None:intergenic 40.0%
!!! ATTGTTTTGGAAGCTGCACA+AGG - chr2_2:10315688-10315707 Msa0237240:CDS 40.0%
CAAGAAACAACCAAGTAACG+TGG - chr2_2:10315885-10315904 Msa0237240:intron 40.0%
TATTATGGACCCACGTTACT+TGG + chr2_2:10315898-10315917 None:intergenic 40.0%
ATGGTGTTTGTGTCAATGTC+AGG - chr2_2:10316041-10316060 Msa0237240:intron 40.0%
TAGTCTGAGTTTGTGCTTGA+AGG + chr2_2:10316103-10316122 None:intergenic 40.0%
! AACCATTGCTCGCGAAATTT+TGG - chr2_2:10316355-10316374 Msa0237240:CDS 40.0%
TACCAAAATTTCGCGAGCAA+TGG + chr2_2:10316360-10316379 None:intergenic 40.0%
CTAGCAACATGGTTTACAAG+AGG + chr2_2:10316392-10316411 None:intergenic 40.0%
AAGGATTAGAAGTCGGATCA+TGG + chr2_2:10316945-10316964 None:intergenic 40.0%
TTAGGAAGACCTTCATTGCA+AGG + chr2_2:10316964-10316983 None:intergenic 40.0%
TACCGACACCGAAAATGATT+AGG + chr2_2:10316982-10317001 None:intergenic 40.0%
CATTGACATAGGAGCAACAT+GGG - chr2_2:10317295-10317314 Msa0237240:intron 40.0%
CATGGGTAGAGAAAATCCAA+AGG - chr2_2:10317312-10317331 Msa0237240:intron 40.0%
AGAGAAAATCCAAAGGAGGA+AGG - chr2_2:10317319-10317338 Msa0237240:intron 40.0%
! TGTGTTTTTCCTTCCTCCTT+TGG + chr2_2:10317331-10317350 None:intergenic 40.0%
GGAGGAAGGAAAAACACATT+CGG - chr2_2:10317333-10317352 Msa0237240:intron 40.0%
GAGGAAGGAAAAACACATTC+GGG - chr2_2:10317334-10317353 Msa0237240:intron 40.0%
CCACCAAATTCTTCAACATG+AGG + chr2_2:10317428-10317447 None:intergenic 40.0%
CCTCATGTTGAAGAATTTGG+TGG - chr2_2:10317425-10317444 Msa0237240:intron 40.0%
! CATGTTGAAGAATTTGGTGG+TGG - chr2_2:10317428-10317447 Msa0237240:intron 40.0%
GATTCTAGATATGTACCCTG+TGG - chr2_2:10317574-10317593 Msa0237240:intron 40.0%
! TGCATCTTGCTGCTACTTAT+AGG - chr2_2:10317744-10317763 Msa0237240:intron 40.0%
! ATCTTGCTGCTACTTATAGG+AGG - chr2_2:10317747-10317766 Msa0237240:intron 40.0%
CTTATAGGAGGTTTAAGCCT+TGG - chr2_2:10317759-10317778 Msa0237240:intron 40.0%
AAATGCAGTGGGAATACAAG+TGG - chr2_2:10317804-10317823 Msa0237240:intron 40.0%
! TCAATGTCTCGTTTTGTGGA+TGG + chr2_2:10317953-10317972 None:intergenic 40.0%
! TGAGCAAGATTCTGCAGTTT+TGG + chr2_2:10318394-10318413 None:intergenic 40.0%
! TTTTAGCAGTAGTGGTATGC+CGG + chr2_2:10318490-10318509 None:intergenic 40.0%
ACAGCATAGAGTTTGAAAGC+AGG + chr2_2:10318516-10318535 None:intergenic 40.0%
TTCAAACCGAGATGTGAGTA+TGG + chr2_2:10318592-10318611 None:intergenic 40.0%
AACCCTACAAGAAGCTTTCT+TGG + chr2_2:10318639-10318658 None:intergenic 40.0%
CACATCTATAGCATCTGTTC+TGG - chr2_2:10318671-10318690 Msa0237240:CDS 40.0%
CAGACATGTTGCAGCATATA+TGG + chr2_2:10318757-10318776 None:intergenic 40.0%
ATCTGAGTTTGGCTATGTGT+CGG - chr2_2:10318820-10318839 Msa0237240:CDS 40.0%
GTCTGCAAGTGTTCATTGTT+AGG + chr2_2:10318961-10318980 None:intergenic 40.0%
GTGCACAATGAGAACCAAAA+GGG + chr2_2:10319043-10319062 None:intergenic 40.0%
AGTGCACAATGAGAACCAAA+AGG + chr2_2:10319044-10319063 None:intergenic 40.0%
GGATGTTCCTGCACATATCT+TGG + chr2_2:10315111-10315130 None:intergenic 45.0%
TTCATGTTGCAGCAGAGCTT+GGG - chr2_2:10315164-10315183 Msa0237240:CDS 45.0%
AATGAGGATGGGATCTCTTC+TGG + chr2_2:10315215-10315234 None:intergenic 45.0%
! AGGCGAAACTCCTCTTTTCT+TGG - chr2_2:10315252-10315271 Msa0237240:CDS 45.0%
TGAACAGCTGCCAAGAAAAG+AGG + chr2_2:10315265-10315284 None:intergenic 45.0%
! CTTTTCTTGGCAGCTGTTCA+TGG - chr2_2:10315265-10315284 Msa0237240:CDS 45.0%
GTGAACGCTGTAAACCATGA+TGG - chr2_2:10315630-10315649 Msa0237240:CDS 45.0%
GCAGAGGTGATAATCCATCA+TGG + chr2_2:10315647-10315666 None:intergenic 45.0%
CACCTCTGCATATTCTTGCT+AGG - chr2_2:10315658-10315677 Msa0237240:CDS 45.0%
!! TTTTGGAAGCTGCACAAGGA+TGG - chr2_2:10315692-10315711 Msa0237240:CDS 45.0%
! AGAAGGTAGGACTAGCAACA+TGG + chr2_2:10316403-10316422 None:intergenic 45.0%
TCATGGATTCCCAATTGGGT+GGG + chr2_2:10316928-10316947 None:intergenic 45.0%
ATCATGGATTCCCAATTGGG+TGG + chr2_2:10316929-10316948 None:intergenic 45.0%
CGGATCATGGATTCCCAATT+GGG + chr2_2:10316932-10316951 None:intergenic 45.0%
TCGGATCATGGATTCCCAAT+TGG + chr2_2:10316933-10316952 None:intergenic 45.0%
! GCATTGACATAGGAGCAACA+TGG - chr2_2:10317294-10317313 Msa0237240:intron 45.0%
GGGTAGAGAAAATCCAAAGG+AGG - chr2_2:10317315-10317334 Msa0237240:intron 45.0%
!! GTTGAAGAATTTGGTGGTGG+TGG - chr2_2:10317431-10317450 Msa0237240:intron 45.0%
CCACATCATGAATAGCCACA+GGG + chr2_2:10317592-10317611 None:intergenic 45.0%
TCCACATCATGAATAGCCAC+AGG + chr2_2:10317593-10317612 None:intergenic 45.0%
GTGGGAATACAAGTGGTACA+AGG - chr2_2:10317811-10317830 Msa0237240:CDS 45.0%
CACGCACCACTTGTAAAAGA+AGG - chr2_2:10318354-10318373 Msa0237240:CDS 45.0%
AACTGCAGAATCTTGCTCAG+TGG - chr2_2:10318395-10318414 Msa0237240:CDS 45.0%
!!! GCAGGCTTTTTTAGCAGTAG+TGG + chr2_2:10318498-10318517 None:intergenic 45.0%
ACCAAGGCAAAAAAGGACAC+AGG + chr2_2:10318780-10318799 None:intergenic 45.0%
GAGTTGGACCAAGGCAAAAA+AGG + chr2_2:10318787-10318806 None:intergenic 45.0%
GATCAAAGTACAGAGGGAGT+TGG + chr2_2:10318803-10318822 None:intergenic 45.0%
!! GCAACTTTAAGAGGCCCTTT+TGG - chr2_2:10319026-10319045 Msa0237240:CDS 45.0%
!!! TATATATATATATAGTATTT+TGG + chr2_2:10318006-10318025 None:intergenic 5.0%
!!! TTATTTTTTTATTTTTTTTG+AGG - chr2_2:10318152-10318171 Msa0237240:intron 5.0%
!!! TATTTTTTTATTTTTTTTGA+GGG - chr2_2:10318153-10318172 Msa0237240:intron 5.0%
TTCTCTCCATTGCCCTCTCA+TGG + chr2_2:10314957-10314976 None:intergenic 50.0%
CTCTGCTGCAACATGAAGAG+GGG + chr2_2:10315161-10315180 None:intergenic 50.0%
GCTCTGCTGCAACATGAAGA+GGG + chr2_2:10315162-10315181 None:intergenic 50.0%
AGCTCTGCTGCAACATGAAG+AGG + chr2_2:10315163-10315182 None:intergenic 50.0%
CTTCATGTTGCAGCAGAGCT+TGG - chr2_2:10315163-10315182 Msa0237240:CDS 50.0%
AGTCCTACCTTCTAACCCAC+CGG - chr2_2:10316410-10316429 Msa0237240:CDS 50.0%
ATGTAGAGCAAGCGCAAGCA+AGG - chr2_2:10316879-10316898 Msa0237240:intron 50.0%
!! ATCACTGGTTCCCACCCAAT+TGG - chr2_2:10316915-10316934 Msa0237240:intron 50.0%
!! TCACTGGTTCCCACCCAATT+GGG - chr2_2:10316916-10316935 Msa0237240:intron 50.0%
!! GAAGAATTTGGTGGTGGTGG+TGG - chr2_2:10317434-10317453 Msa0237240:intron 50.0%
CCCTGTGGCTATTCATGATG+TGG - chr2_2:10317589-10317608 Msa0237240:intron 50.0%
TGCTGCGATGCAAATGCAGT+GGG - chr2_2:10317793-10317812 Msa0237240:intron 50.0%
CAAGTGGTGCGTGTGTATCA+AGG + chr2_2:10318347-10318366 None:intergenic 50.0%
ACAACCTCAACAGCTATCCC+AGG - chr2_2:10318447-10318466 Msa0237240:intron 50.0%
ATTCTTGATCAGGACCGCCT+GGG + chr2_2:10318467-10318486 None:intergenic 50.0%
GGTATGCCGGATTCTTGATC+AGG + chr2_2:10318477-10318496 None:intergenic 50.0%
CAAAATAAGGGCTGTGACGG+AGG + chr2_2:10318562-10318581 None:intergenic 50.0%
GTTCTGGTCTCATTCTGTGC+AGG - chr2_2:10318687-10318706 Msa0237240:CDS 50.0%
!!! GCCTGTGTCCTTTTTTGCCT+TGG - chr2_2:10318776-10318795 Msa0237240:CDS 50.0%
GAGTTTGGCTATGTGTCGGA+AGG - chr2_2:10318824-10318843 Msa0237240:CDS 50.0%
AACACTTTGTAGCTGCGCTG+AGG + chr2_2:10318852-10318871 None:intergenic 50.0%
ACCATGCCATGAGAGGGCAA+TGG - chr2_2:10314948-10314967 Msa0237240:three_prime_UTR 55.0%
TCCATTGCCCTCTCATGGCA+TGG + chr2_2:10314952-10314971 None:intergenic 55.0%
GTCCTACCTTCTAACCCACC+GGG - chr2_2:10316411-10316430 Msa0237240:CDS 55.0%
CCAACTACTTGCGCTAGACC+CGG + chr2_2:10316432-10316451 None:intergenic 55.0%
!! GAATTTGGTGGTGGTGGTGG+TGG - chr2_2:10317437-10317456 Msa0237240:intron 55.0%
TTTAAGCCTTGGCGTGTGCC+TGG - chr2_2:10317770-10317789 Msa0237240:intron 55.0%
TGCATTTGCATCGCAGCACC+AGG + chr2_2:10317791-10317810 None:intergenic 55.0%
GTGCTGCGATGCAAATGCAG+TGG - chr2_2:10317792-10317811 Msa0237240:intron 55.0%
ACCTCAACAGCTATCCCAGG+CGG - chr2_2:10318450-10318469 Msa0237240:intron 55.0%
GATTCTTGATCAGGACCGCC+TGG + chr2_2:10318468-10318487 None:intergenic 55.0%
GGCGGTCCTGATCAAGAATC+CGG - chr2_2:10318468-10318487 Msa0237240:intron 55.0%
GTACAGAGGGAGTTGGACCA+AGG + chr2_2:10318796-10318815 None:intergenic 55.0%
!! GACCCGGTGGGTTAGAAGGT+AGG + chr2_2:10316416-10316435 None:intergenic 60.0%
!! GCTAGACCCGGTGGGTTAGA+AGG + chr2_2:10316420-10316439 None:intergenic 60.0%
CTACTTGCGCTAGACCCGGT+GGG + chr2_2:10316428-10316447 None:intergenic 60.0%
ACTACTTGCGCTAGACCCGG+TGG + chr2_2:10316429-10316448 None:intergenic 60.0%
CCGGGTCTAGCGCAAGTAGT+TGG - chr2_2:10316429-10316448 Msa0237240:CDS 60.0%
!! TTTGGTGGTGGTGGTGGTGG+TGG - chr2_2:10317440-10317459 Msa0237240:intron 60.0%
ACCGCCTGGGATAGCTGTTG+AGG + chr2_2:10318454-10318473 None:intergenic 60.0%
!! GGTGGTGGTGGTGGTGGCAT+AGG - chr2_2:10317449-10317468 Msa0237240:intron 65.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG - chr2_2:10317443-10317462 Msa0237240:intron 70.0%
GCAGCACCAGGCACACGCCA+AGG + chr2_2:10317779-10317798 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 10314863 10319145 10314863 ID=Msa0237240;Name=Msa0237240
chr2_2 mRNA 10314863 10319145 10314863 ID=Msa0237240-mRNA-1;Parent=Msa0237240;Name=Msa0237240-mRNA-1;_AED=0.35;_eAED=0.35;_QI=54|1|1|1|0.75|0.66|9|215|697
chr2_2 exon 10314863 10314908 10314863 ID=Msa0237240-mRNA-1:exon:4475;Parent=Msa0237240-mRNA-1
chr2_2 exon 10314934 10315080 10314934 ID=Msa0237240-mRNA-1:exon:4474;Parent=Msa0237240-mRNA-1
chr2_2 exon 10315105 10315738 10315105 ID=Msa0237240-mRNA-1:exon:4473;Parent=Msa0237240-mRNA-1
chr2_2 exon 10316176 10316702 10316176 ID=Msa0237240-mRNA-1:exon:4472;Parent=Msa0237240-mRNA-1
chr2_2 exon 10317010 10317123 10317010 ID=Msa0237240-mRNA-1:exon:4471;Parent=Msa0237240-mRNA-1
chr2_2 exon 10317632 10317697 10317632 ID=Msa0237240-mRNA-1:exon:4470;Parent=Msa0237240-mRNA-1
chr2_2 exon 10317811 10317945 10317811 ID=Msa0237240-mRNA-1:exon:4469;Parent=Msa0237240-mRNA-1
chr2_2 exon 10318267 10318416 10318267 ID=Msa0237240-mRNA-1:exon:4468;Parent=Msa0237240-mRNA-1
chr2_2 exon 10318602 10319145 10318602 ID=Msa0237240-mRNA-1:exon:4467;Parent=Msa0237240-mRNA-1
chr2_2 five_prime_UTR 10319092 10319145 10319092 ID=Msa0237240-mRNA-1:five_prime_utr;Parent=Msa0237240-mRNA-1
chr2_2 CDS 10318602 10319091 10318602 ID=Msa0237240-mRNA-1:cds;Parent=Msa0237240-mRNA-1
chr2_2 CDS 10318267 10318416 10318267 ID=Msa0237240-mRNA-1:cds;Parent=Msa0237240-mRNA-1
chr2_2 CDS 10317811 10317945 10317811 ID=Msa0237240-mRNA-1:cds;Parent=Msa0237240-mRNA-1
chr2_2 CDS 10317632 10317697 10317632 ID=Msa0237240-mRNA-1:cds;Parent=Msa0237240-mRNA-1
chr2_2 CDS 10317010 10317123 10317010 ID=Msa0237240-mRNA-1:cds;Parent=Msa0237240-mRNA-1
chr2_2 CDS 10316176 10316702 10316176 ID=Msa0237240-mRNA-1:cds;Parent=Msa0237240-mRNA-1
chr2_2 CDS 10315127 10315738 10315127 ID=Msa0237240-mRNA-1:cds;Parent=Msa0237240-mRNA-1
chr2_2 three_prime_UTR 10315105 10315126 10315105 ID=Msa0237240-mRNA-1:three_prime_utr;Parent=Msa0237240-mRNA-1
chr2_2 three_prime_UTR 10314934 10315080 10314934 ID=Msa0237240-mRNA-1:three_prime_utr;Parent=Msa0237240-mRNA-1
chr2_2 three_prime_UTR 10314863 10314908 10314863 ID=Msa0237240-mRNA-1:three_prime_utr;Parent=Msa0237240-mRNA-1
Gene Sequence

>Msa0237240

ATGGCTGAGATTGAGTTTGAAAGTTTGTTTAACCATGCCATGAGAGGGCAATGGAGAGAAGTTTTAGAGTCGTATGAGAAAAACCCTGAAGTATTGGAGGCAAAGATCACAAAAGCAGAAGACACAGTGCTACACATTGCTATATACGTGAGCCAAACAGTTTTTGTGACAACCTTGTTAGATAACATAAGCCAAGATATGTGCAGGAACATCCTAAGAATGCAAAACTCAAAGGGAAATACCCCTCTTCATGTTGCAGCAGAGCTTGGGAATGTAGACATTTGTAACAACATAGCCAGAAGAGATCCCATCCTCATTTCCTATCGAAATTTCGAAGGCGAAACTCCTCTTTTCTTGGCAGCTGTTCATGGAAAAAGAGATGCTTTCTTTTGTCTTCATGGTCGCCAACACAACAAAGATGATGACTCACTTTCAATCAAAAACAATGGAGACACTATTCTTCATTCTACCATATCCAGTGAATACTTTGGTTTGGCACTTCAAATAATTGGAATGTATCCAAAGCTTGTGAACGCTGTAAACCATGATGGATTATCACCTCTGCATATTCTTGCTAGGAAGCCTAATTGTTTTGGAAGCTGCACAAGGATGGATCTAATTGATCGTATCATCTACACTTGTTCAATTGTTGATGAGAACAAGGAAGAAAGATATGACCTTCAAGCACAAACTCAGACTACTCATCACTATCCATTGAACTATGGAACATGCATGACCTTCATATCTTTGTTGAATAGGTTTTTTAAAGTAACAACAACAGGAAAAGATACAAATGCTGCTGCAACTAGTGACGAAGAGAACCATTGCTCGCGAAATTTTGAGCAAGCGCAAGCAAGGAAAGAAAAGAAAAATCACTGGTTCCCACCCAATTGGGAATCCATGATCCGACTTCTAATCCTTGCAATGAAGGTCTTCCTAATCATTTTCGGTGTCGGAGCAACATGGGTAGAGAAAATCCAAAGGAGGAAGGAAAAACACATTCGGGCTACACAAGTAATGAATGAACTGATACAACGCGCTTCCTTATACAAGTATGATTTCACAGGACCAAGTCCTCATGTTGAAGAATTTGGTGGTGGTGGTGGTGGTGGTGGCATAGGCAAAATCAAGAGCAATACAGAAAATGAAGTTATTGAGAAGAGGAGAATGGTGTCACCTATCTTAATTGCAGCAAAGATGGGAGTGACTGAAATGATTGAAAAGATTCTAGATATGTACCCTGTGGCTATTCATGATGTGGACAGTCAGAACAAGAATGTTGTTCTTTTGGCCATAGAAAATAGGCAACCTCATGTATACAGTTTGTTAAATAAGAGGAGTGTAATCAAAGAGACTGCATTTCGTCAAGTTGATATCAATGGTAACAGTGCATTGCATCTTGCTGCTACTTATAGGAGGTTTAAGCCTTGGCGTGTGCCTGGTGCTGCGATGCAAATGCAGTGGGAATACAAGTGGTACAAGCTTGTTAAGGACTCCATGCCACCTAATTTCTATGAACGTTATAATAAGGATGGGAAAACAGCAAAGCAAGTCTTCCTTGATACACACGCACCACTTGTAAAAGAAGGTAGTAAATGGCTCACCAAAACTGCAGAATCTTGCTCAGTGGTAGCAGCACTTGTTGCAACTGTTGCATTCACAACCTCAACAGCTATCCCAGGCGGTCCTGATCAAGAATCCGGCATACCACTACTGCTAAAAAAGCCTGCTTTCAAACTCTATGCTGTAGCATCACTTGTTGCACTTTGCTCCTCCGTCACAGCCCTTATTTTGTTTCTTTCCATACTCACATCTCGGTTTGAAGAAAAAGATTTTGTTATCGACTTACCAAGAAAGCTTCTTGTAGGGTTGACTACACTCTTCACATCTATAGCATCTGTTCTGGTCTCATTCTGTGCAGGACATTTCTTTATTGTTGAAGCCCAGATGAGATTTGCAGTTTATCCCATATATGCTGCAACATGTCTGCCTGTGTCCTTTTTTGCCTTGGTCCAACTCCCTCTGTACTTTGATCTGAGTTTGGCTATGTGTCGGAAGGTTCCTCAGCGCAGCTACAAAGTGTTCTTTCACTAG
Protein sequence

>Msa0237240

MAEIEFESLFNHAMRGQWREVLESYEKNPEVLEAKITKAEDTVLHIAIYVSQTVFVTTLLDNISQDMCRNILRMQNSKGNTPLHVAAELGNVDICNNIARRDPILISYRNFEGETPLFLAAVHGKRDAFFCLHGRQHNKDDDSLSIKNNGDTILHSTISSEYFGLALQIIGMYPKLVNAVNHDGLSPLHILARKPNCFGSCTRMDLIDRIIYTCSIVDENKEERYDLQAQTQTTHHYPLNYGTCMTFISLLNRFFKVTTTGKDTNAAATSDEENHCSRNFEQAQARKEKKNHWFPPNWESMIRLLILAMKVFLIIFGVGATWVEKIQRRKEKHIRATQVMNELIQRASLYKYDFTGPSPHVEEFGGGGGGGGIGKIKSNTENEVIEKRRMVSPILIAAKMGVTEMIEKILDMYPVAIHDVDSQNKNVVLLAIENRQPHVYSLLNKRSVIKETAFRQVDINGNSALHLAATYRRFKPWRVPGAAMQMQWEYKWYKLVKDSMPPNFYERYNKDGKTAKQVFLDTHAPLVKEGSKWLTKTAESCSVVAALVATVAFTTSTAIPGGPDQESGIPLLLKKPAFKLYAVASLVALCSSVTALILFLSILTSRFEEKDFVIDLPRKLLVGLTTLFTSIASVLVSFCAGHFFIVEAQMRFAVYPIYAATCLPVSFFALVQLPLYFDLSLAMCRKVPQRSYKVFFH*