AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0063190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063190 MtrunA17_Chr1g0165201 97.040 473 10 2 1 473 1 469 0.0 934
Msa0063190 MtrunA17_Chr1g0212321 65.443 463 135 7 28 473 32 486 0.0 580
Msa0063190 MtrunA17_Chr1g0210201 49.367 395 187 4 79 473 86 467 8.71e-126 374
Msa0063190 MtrunA17_Chr7g0275731 46.445 422 213 6 55 473 73 484 3.01e-118 355
Msa0063190 MtrunA17_Chr6g0484901 41.650 497 253 13 2 473 7 491 2.60e-107 327
Msa0063190 MtrunA17_Chr3g0130931 38.018 434 238 13 50 473 36 448 1.60e-84 267
Msa0063190 MtrunA17_Chr8g0390761 37.209 344 210 4 125 466 109 448 9.56e-79 252
Msa0063190 MtrunA17_Chr4g0001991 32.767 412 254 7 75 473 116 517 7.88e-68 226
Msa0063190 MtrunA17_Chr8g0386441 33.333 429 245 16 59 473 28 429 4.32e-67 221
Msa0063190 MtrunA17_Chr5g0435871 33.179 431 245 13 59 473 31 434 7.91e-67 221
Msa0063190 MtrunA17_Chr5g0435971 33.411 431 244 13 59 473 28 431 1.18e-66 220
Msa0063190 MtrunA17_Chr3g0099891 34.550 411 235 9 71 473 70 454 4.56e-66 219
Msa0063190 MtrunA17_Chr3g0095891 32.102 433 251 8 76 473 34 458 4.71e-66 219
Msa0063190 MtrunA17_Chr2g0291201 31.453 461 277 16 31 473 12 451 4.80e-66 219
Msa0063190 MtrunA17_Chr5g0419291 32.706 425 246 15 62 473 31 428 1.78e-64 214
Msa0063190 MtrunA17_Chr3g0099901 40.278 360 197 9 124 473 134 485 2.68e-62 210
Msa0063190 MtrunA17_Chr5g0442921 31.277 470 271 12 53 473 87 553 1.62e-60 207
Msa0063190 MtrunA17_Chr6g0486981 29.885 435 259 16 59 473 28 436 4.18e-59 200
Msa0063190 MtrunA17_Chr8g0352671 31.422 436 256 16 55 473 27 436 1.89e-58 199
Msa0063190 MtrunA17_Chr6g0487471 33.643 431 246 15 59 473 28 434 3.02e-58 198
Msa0063190 MtrunA17_Chr8g0352661 33.967 368 202 16 131 473 85 436 3.09e-58 198
Msa0063190 MtrunA17_Chr2g0333991 29.647 425 260 16 62 470 31 432 1.57e-57 196
Msa0063190 MtrunA17_Chr2g0311451 29.604 429 261 17 62 473 31 435 1.46e-55 191
Msa0063190 MtrunA17_Chr2g0307991 33.795 361 205 13 132 473 59 404 6.19e-53 183
Msa0063190 MtrunA17_Chr2g0308001 32.493 357 220 13 132 473 58 408 3.00e-50 177
Msa0063190 MtrunA17_Chr3g0087851 32.133 361 218 12 130 473 86 436 1.23e-49 175
Msa0063190 MtrunA17_Chr2g0310831 30.874 366 214 14 130 473 92 440 7.22e-49 173
Msa0063190 MtrunA17_Chr2g0310821 31.638 354 213 12 131 473 107 442 9.94e-49 173
Msa0063190 MtrunA17_Chr4g0061641 35.072 345 187 13 148 473 70 396 9.25e-48 169
Msa0063190 MtrunA17_Chr5g0395931 31.956 363 213 12 131 473 87 435 1.02e-47 170
Msa0063190 MtrunA17_Chr5g0395911 32.493 357 218 11 131 473 66 413 1.21e-47 169
Msa0063190 MtrunA17_Chr2g0310801 30.411 365 212 13 131 473 89 433 1.24e-45 164
Msa0063190 MtrunA17_Chr5g0415951 30.618 356 222 14 133 473 89 434 4.96e-45 163
Msa0063190 MtrunA17_Chr5g0395871 31.068 412 250 14 76 473 33 424 6.72e-45 162
Msa0063190 MtrunA17_Chr2g0307461 31.793 368 216 12 133 473 71 430 7.43e-44 159
Msa0063190 MtrunA17_Chr3g0133071 31.144 411 247 13 75 473 51 437 4.70e-42 155
Msa0063190 MtrunA17_Chr6g0457401 29.095 409 250 15 82 473 51 436 7.80e-42 154
Msa0063190 MtrunA17_Chr1g0164401 33.333 354 211 9 130 473 90 428 2.92e-41 152
Msa0063190 MtrunA17_Chr4g0023351 37.963 216 120 7 132 334 58 272 1.83e-40 147
Msa0063190 MtrunA17_Chr8g0353261 33.048 351 217 9 130 473 94 433 1.63e-37 142
Msa0063190 MtrunA17_Chr2g0312941 29.815 379 217 12 130 471 85 451 6.43e-36 138
Msa0063190 MtrunA17_Chr7g0265331 27.168 346 218 12 131 450 80 417 2.95e-30 123
Msa0063190 MtrunA17_Chr2g0309561 25.397 441 272 14 87 473 71 508 7.37e-30 122
Msa0063190 MtrunA17_Chr1g0179091 27.869 366 196 15 129 473 48 366 6.15e-29 117
Msa0063190 MtrunA17_Chr7g0267171 27.949 390 221 15 131 473 89 465 4.28e-28 116
Msa0063190 MtrunA17_Chr2g0320621 28.329 353 206 17 131 450 76 414 8.26e-28 115
Msa0063190 MtrunA17_Chr8g0352691 32.463 268 162 10 215 473 2 259 1.08e-27 111
Msa0063190 MtrunA17_Chr3g0112051 28.689 366 202 14 135 473 76 409 1.11e-27 114
Msa0063190 MtrunA17_Chr5g0395891 29.836 305 184 12 187 473 20 312 4.51e-27 110
Msa0063190 MtrunA17_Chr3g0082281 33.688 282 166 7 202 473 49 319 5.89e-27 110
Msa0063190 MtrunA17_Chr4g0027681 28.771 358 199 19 130 450 75 413 2.84e-26 111
Msa0063190 MtrunA17_Chr4g0056211 28.180 401 213 19 137 473 81 470 4.73e-26 110
Msa0063190 MtrunA17_Chr5g0401601 25.067 371 233 14 130 473 86 438 1.01e-25 110
Msa0063190 MtrunA17_Chr4g0053721 24.528 371 235 14 130 473 78 430 3.60e-25 108
Msa0063190 MtrunA17_Chr7g0239001 28.800 375 220 18 135 473 62 425 9.72e-25 106
Msa0063190 MtrunA17_Chr3g0110191 26.902 368 222 15 135 473 89 438 1.78e-24 105
Msa0063190 MtrunA17_Chr8g0384731 26.075 372 227 15 131 473 72 424 2.52e-24 105
Msa0063190 MtrunA17_Chr5g0399171 25.666 413 219 17 132 473 74 469 3.59e-24 105
Msa0063190 MtrunA17_Chr1g0189381 25.926 378 231 16 130 473 67 429 1.06e-23 103
Msa0063190 MtrunA17_Chr7g0221681 24.416 385 241 14 124 473 64 433 1.88e-23 102
Msa0063190 MtrunA17_Chr1g0179751 26.136 352 220 12 129 450 105 446 3.08e-23 102
Msa0063190 MtrunA17_Chr5g0419151 28.832 274 175 9 208 473 106 367 9.31e-23 99.8
Msa0063190 MtrunA17_Chr5g0434411 25.500 400 257 13 102 473 51 437 4.55e-22 98.6
Msa0063190 MtrunA17_Chr7g0249451 25.067 375 239 15 124 468 63 425 1.20e-21 97.4
Msa0063190 MtrunA17_Chr8g0352681 33.108 148 84 4 62 209 32 164 3.79e-20 87.4
Msa0063190 MtrunA17_Chr5g0406001 24.665 373 225 12 133 473 113 461 3.11e-19 90.5
Msa0063190 MtrunA17_Chr3g0130741 25.654 382 231 17 123 473 75 434 5.50e-19 89.4
Msa0063190 MtrunA17_Chr3g0124421 23.438 448 292 15 56 473 24 450 5.77e-19 89.7
Msa0063190 MtrunA17_Chr5g0425141 25.393 445 270 20 60 473 36 449 1.47e-18 88.2
Msa0063190 MtrunA17_Chr8g0371351 23.913 368 234 15 133 473 101 449 5.19e-18 86.7
Msa0063190 MtrunA17_Chr4g0010951 31.064 235 130 10 102 312 31 257 1.61e-17 84.7
Msa0063190 MtrunA17_Chr5g0434441 25.466 322 212 11 135 435 71 385 1.63e-17 84.7
Msa0063190 MtrunA17_Chr6g0484731 24.250 400 247 17 111 473 170 550 2.26e-17 84.7
Msa0063190 MtrunA17_Chr3g0078321 22.423 388 250 14 118 473 44 412 2.28e-14 74.7
Msa0063190 MtrunA17_Chr2g0287821 23.604 394 239 18 127 472 63 442 4.12e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063190 AT3G20015.1 60.626 447 171 4 29 473 27 470 0.0 524
Msa0063190 AT1G25510.1 43.833 454 237 7 32 473 36 483 9.40e-125 372
Msa0063190 AT3G18490.1 43.000 500 249 10 2 473 9 500 5.28e-123 368
Msa0063190 AT1G01300.1 48.418 411 205 6 67 473 77 484 4.34e-118 355
Msa0063190 AT3G61820.1 47.761 402 198 5 83 473 83 483 4.23e-116 350
Msa0063190 AT5G10770.1 35.377 424 243 9 72 473 59 473 6.72e-77 248
Msa0063190 AT2G03200.1 35.802 405 234 13 86 473 63 458 4.04e-70 230
Msa0063190 AT5G10760.1 37.084 391 227 9 87 473 89 464 7.69e-66 219
Msa0063190 AT5G33340.1 32.192 438 258 14 50 473 22 434 1.56e-62 210
Msa0063190 AT1G79720.1 33.580 405 236 10 87 468 83 477 1.12e-59 203
Msa0063190 AT3G59080.1 31.651 436 238 12 89 473 106 532 1.15e-56 197
Msa0063190 AT2G42980.1 31.828 443 257 14 72 473 86 524 4.54e-56 195
Msa0063190 AT3G25700.1 32.895 380 228 11 120 473 71 449 7.61e-55 190
Msa0063190 AT1G64830.1 31.891 439 257 15 50 473 17 428 4.51e-54 187
Msa0063190 AT2G28040.2 33.333 351 201 10 132 473 55 381 7.59e-52 180
Msa0063190 AT2G28040.1 33.333 351 201 10 132 473 64 390 1.35e-51 180
Msa0063190 AT3G54400.1 34.091 352 212 10 130 473 85 424 7.14e-50 176
Msa0063190 AT1G09750.1 31.956 363 229 10 122 473 93 448 7.47e-50 176
Msa0063190 AT2G28010.1 29.716 387 238 9 96 473 30 391 1.00e-48 172
Msa0063190 AT3G59080.2 30.626 431 213 12 89 473 106 496 1.37e-47 171
Msa0063190 AT2G28030.1 31.143 350 209 8 133 473 61 387 6.41e-47 167
Msa0063190 AT2G28220.1 30.447 358 205 11 133 473 67 397 7.85e-44 159
Msa0063190 AT1G31450.1 29.268 451 263 18 50 473 20 441 1.36e-42 157
Msa0063190 AT2G35615.1 28.442 443 264 18 59 473 26 443 2.35e-42 156
Msa0063190 AT4G30040.1 31.214 346 209 10 133 460 85 419 5.27e-39 146
Msa0063190 AT2G28225.1 29.722 360 205 13 133 473 67 397 6.50e-39 145
Msa0063190 AT5G07030.1 33.053 357 212 10 130 473 112 454 1.08e-37 143
Msa0063190 AT2G23945.1 29.000 400 241 17 62 440 32 409 8.36e-37 141
Msa0063190 AT3G12700.1 26.531 441 283 16 52 473 42 460 3.13e-33 131
Msa0063190 AT4G30030.1 31.014 345 199 15 133 457 78 403 2.34e-32 128
Msa0063190 AT5G43100.1 27.548 363 226 13 130 473 73 417 4.47e-32 130
Msa0063190 AT5G43100.2 27.548 363 226 13 130 473 73 417 6.39e-32 127
Msa0063190 AT2G36670.2 27.586 348 213 13 131 450 98 434 1.52e-31 127
Msa0063190 AT2G36670.4 27.457 346 212 13 133 450 34 368 3.45e-31 125
Msa0063190 AT2G36670.3 27.457 346 212 13 133 450 34 368 3.45e-31 125
Msa0063190 AT2G36670.1 27.457 346 212 13 133 450 105 439 4.17e-31 125
Msa0063190 AT3G02740.1 27.733 375 227 15 128 473 80 439 7.10e-31 125
Msa0063190 AT3G02740.2 27.568 370 224 15 133 473 10 364 2.61e-30 122
Msa0063190 AT2G39710.1 28.571 378 215 16 135 472 67 429 8.61e-30 121
Msa0063190 AT3G50050.1 28.056 360 230 13 130 473 90 436 5.62e-29 120
Msa0063190 AT1G05840.1 26.963 382 233 15 124 473 71 438 1.72e-27 115
Msa0063190 AT5G36260.1 25.474 369 238 13 131 473 76 433 2.13e-27 115
Msa0063190 AT1G66180.1 28.022 364 226 13 135 473 74 426 4.13e-26 110
Msa0063190 AT5G22850.1 28.286 350 210 14 131 450 79 417 4.70e-26 111
Msa0063190 AT5G37540.1 27.671 365 230 12 135 473 82 438 5.56e-26 110
Msa0063190 AT1G65240.1 24.866 374 231 15 131 473 72 426 4.41e-25 108
Msa0063190 AT3G52500.1 26.573 429 260 14 91 473 48 467 2.32e-24 105
Msa0063190 AT5G02190.1 28.184 369 208 18 148 473 88 442 5.06e-24 104
Msa0063190 AT4G12920.1 28.000 350 197 11 133 460 58 374 1.14e-22 100
Msa0063190 AT5G45120.1 23.542 463 278 18 80 473 23 478 1.33e-22 100
Msa0063190 AT1G08210.4 27.224 371 230 16 131 473 116 474 3.29e-22 100
Msa0063190 AT1G08210.3 27.224 371 230 16 131 473 130 488 3.55e-22 99.8
Msa0063190 AT1G08210.1 27.224 371 230 16 131 473 82 440 5.88e-22 99.0
Msa0063190 AT1G08210.2 28.527 319 191 14 131 424 82 388 1.46e-21 97.8
Msa0063190 AT3G25700.2 33.537 164 95 5 120 269 71 234 1.06e-18 87.8
Msa0063190 AT1G77480.2 27.013 385 225 20 123 473 57 419 1.08e-18 88.6
Msa0063190 AT4G16563.1 26.884 398 211 16 150 473 100 491 1.21e-18 89.0
Msa0063190 AT1G77480.1 27.013 385 225 20 123 473 57 419 1.72e-18 88.2
Msa0063190 AT4G33490.2 28.897 263 149 12 123 368 50 291 1.75e-18 87.8
Msa0063190 AT4G33490.1 28.897 263 149 12 123 368 47 288 1.86e-18 87.8
Msa0063190 AT1G49050.2 27.132 258 154 13 133 369 30 274 3.75e-18 86.7
Msa0063190 AT3G51340.2 25.886 367 224 18 133 473 103 447 4.23e-17 84.3
Msa0063190 AT4G35880.1 24.217 351 224 14 133 460 107 438 1.20e-16 82.8
Msa0063190 AT3G51350.1 24.518 363 217 17 133 468 102 434 7.49e-16 80.5
Msa0063190 AT4G35880.2 24.189 339 215 14 133 448 107 426 3.00e-15 78.2
Msa0063190 AT3G42550.1 24.930 357 213 15 130 473 75 389 4.46e-15 77.4
Msa0063190 AT3G51340.3 25.566 309 188 14 133 418 103 392 4.71e-15 77.4
Msa0063190 AT1G44130.1 31.068 206 115 10 123 310 39 235 7.97e-15 76.6
Msa0063190 AT3G51360.9 26.948 308 188 14 126 413 92 382 8.70e-14 73.9
Msa0063190 AT3G51360.1 26.948 308 188 14 126 413 82 372 9.43e-14 73.6
Msa0063190 AT3G51360.10 26.948 308 188 14 126 413 82 372 1.11e-13 73.2
Msa0063190 AT3G51360.4 26.220 328 205 14 126 433 82 392 1.13e-13 73.2
Msa0063190 AT3G51360.5 26.220 328 205 14 126 433 92 402 1.19e-13 73.2
Msa0063190 AT3G51360.6 26.948 308 188 14 126 413 92 382 1.45e-13 72.8
Msa0063190 AT3G51340.4 25.175 286 175 13 133 395 103 372 3.09e-13 71.6
Msa0063190 AT3G51340.1 25.175 286 175 13 133 395 103 372 3.49e-13 72.0
Msa0063190 AT3G51360.7 26.246 301 185 14 133 413 5 288 1.16e-12 70.1
Msa0063190 AT3G51360.2 27.099 262 156 12 126 369 92 336 3.78e-11 65.1

Find 140 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAATATTTGTTCGGATA+TGG 0.122611 1_2:-23405166 None:intergenic
GCTACTTCTGCTTCGTTTAT+TGG 0.138095 1_2:+23403711 Msa0063190:CDS
TTCTACTACGTCTCACTTTC+GGG 0.179528 1_2:+23405117 Msa0063190:CDS
CTACTTCTGCTTCGTTTATT+GGG 0.181833 1_2:+23403712 Msa0063190:CDS
ACTAAAACAATCTCGAATTT+TGG 0.188720 1_2:+23405612 Msa0063190:three_prime_UTR
TCATCCGGTTCACTCGAATT+TGG 0.196357 1_2:+23405030 Msa0063190:CDS
GCATTTGCTCCTTCACCTTC+TGG 0.202156 1_2:+23405471 Msa0063190:CDS
GATATCCACACCTCCCTTTC+CGG 0.230477 1_2:-23403785 None:intergenic
CCTTCTGGTCTTTCCATCAT+AGG 0.241850 1_2:+23405486 Msa0063190:CDS
GCCCAAACCGGCGGAGCTTT+TGG 0.253579 1_2:+23404979 Msa0063190:CDS
ACTAATGGGTTTGTAGGATT+TGG 0.271366 1_2:+23405549 Msa0063190:CDS
GTTTCTATCGATGGAACTAA+TGG 0.272377 1_2:+23405534 Msa0063190:CDS
CTTCTACTACGTCTCACTTT+CGG 0.273039 1_2:+23405116 Msa0063190:CDS
GGAATGTTTGTTGGAGCAGC+TGG 0.314111 1_2:+23404907 Msa0063190:CDS
CATGTCCTTCGTGGGCCAAT+TGG 0.327360 1_2:+23404954 Msa0063190:CDS
ATTCAGGAAGTGATATTGTT+TGG 0.328169 1_2:+23403631 Msa0063190:CDS
AAGTGGTTAGTGCTGTTATT+AGG 0.330467 1_2:-23403212 None:intergenic
GAGGTTGTTGTTGGGTATTA+TGG 0.333275 1_2:-23403329 None:intergenic
ATCCAAAAGCTCCGCCGGTT+TGG 0.334659 1_2:-23404981 None:intergenic
GCAGCTGGGTTGTTAGGCCT+TGG 0.336549 1_2:+23404922 Msa0063190:CDS
TCCAAAAGCTCCGCCGGTTT+GGG 0.338784 1_2:-23404980 None:intergenic
AACGGTCCGCCCGATGGTTA+TGG 0.339939 1_2:-23404845 None:intergenic
GTTGGAGCAGCTGGGTTGTT+AGG 0.347858 1_2:+23404916 Msa0063190:CDS
ACAGCAACAGAAGCTAGTTT+TGG 0.352053 1_2:+23403513 Msa0063190:CDS
TTTGGATCTGATGTAGTATC+AGG 0.353508 1_2:+23403531 Msa0063190:CDS
CGCCGGTTTGGGCTCCCAAT+TGG 0.356798 1_2:-23404969 None:intergenic
ATGTCCTTCGTGGGCCAATT+GGG 0.357155 1_2:+23404955 Msa0063190:CDS
TGAAATATTTGTTCGGATAT+GGG 0.367001 1_2:-23405165 None:intergenic
GATGGAACTAATGGGTTTGT+AGG 0.374888 1_2:+23405543 Msa0063190:CDS
TCCTGCTATTTATCAGTATA+TGG 0.379135 1_2:+23403602 Msa0063190:CDS
CAGTATATGGTGATAGATTC+AGG 0.394103 1_2:+23403615 Msa0063190:CDS
TTAGTGCTGTTATTAGGATT+AGG 0.408484 1_2:-23403206 None:intergenic
ATATTTCAGTTAACTGATAT+AGG 0.421183 1_2:+23405180 Msa0063190:CDS
TCACTTTCGGGTCTTGCAGT+TGG 0.424557 1_2:+23405129 Msa0063190:CDS
CTTTCGGGTCTTGCAGTTGG+AGG 0.428746 1_2:+23405132 Msa0063190:CDS
TGGAACGAGGGAATGTTTGT+TGG 0.432846 1_2:+23404898 Msa0063190:CDS
AAGTGGTGTTGGAAAGGAAA+TGG 0.433318 1_2:-23403235 None:intergenic
TTGCTGAATATTCCCTATGA+TGG 0.435218 1_2:-23405499 None:intergenic
TTTCTATCGATGGAACTAAT+GGG 0.435858 1_2:+23405535 Msa0063190:CDS
TTGATGATGATGTTGCTTGC+CGG 0.437671 1_2:+23403766 Msa0063190:CDS
CAGTTAACTGATATAGGAAC+CGG 0.438789 1_2:+23405186 Msa0063190:CDS
TGCATCGCGAAAAGCATTGT+AGG 0.452930 1_2:-23405259 None:intergenic
CTGCAATCGGGTGCGGACAT+TGG 0.452938 1_2:+23404878 Msa0063190:CDS
TGTCTCATCTCTCGAGGCAC+TGG 0.460971 1_2:+23405006 Msa0063190:CDS
AAATCTTGACCTTTCCTGCC+AGG 0.462698 1_2:+23405406 Msa0063190:CDS
GGCCAATTGGGAGCCCAAAC+CGG 0.466739 1_2:+23404967 Msa0063190:CDS
TAGTAGAAGCTAGGGTAGAA+TGG 0.467116 1_2:-23405102 None:intergenic
AGTTAACTGAAATATTTGTT+CGG 0.472372 1_2:-23405172 None:intergenic
TTCACTCGAATTTGGACGGC+AGG 0.473323 1_2:+23405038 Msa0063190:CDS
GCTGGGTTGTTAGGCCTTGG+AGG 0.477592 1_2:+23404925 Msa0063190:CDS
CCGTCCAAATTCGAGTGAAC+CGG 0.477882 1_2:-23405034 None:intergenic
TTCTGCTTCGTTTATTGGGG+TGG 0.480733 1_2:+23403716 Msa0063190:CDS
TTACTGAGTGTGTTGGTGGT+TGG 0.481231 1_2:-23403144 None:intergenic
GGAATTCAAGTTTCTATCGA+TGG 0.482938 1_2:+23405525 Msa0063190:CDS
CTTCTGGTCTTTCCATCATA+GGG 0.484726 1_2:+23405487 Msa0063190:CDS
GAGTGAGGACTGAGGAATGA+TGG 0.485034 1_2:-23403110 None:intergenic
TGTTTGCTTCAACACACATT+GGG 0.485439 1_2:-23405573 None:intergenic
AGTGTGTTGGTGGTTGGTGA+AGG 0.486160 1_2:-23403138 None:intergenic
TTGATCCCGGCCGATGATGT+TGG 0.486689 1_2:+23405435 Msa0063190:CDS
GATTGCAGTGTCCTTGATAA+CGG 0.491062 1_2:-23404863 None:intergenic
TCTCGAGGCACTGGATCATC+CGG 0.493723 1_2:+23405015 Msa0063190:CDS
ATACCCAACAACAACCTCAA+TGG 0.495019 1_2:+23403334 Msa0063190:CDS
TCTCTTACTGAGTGTGTTGG+TGG 0.501582 1_2:-23403148 None:intergenic
AGTGAGACGTAGTAGAAGCT+AGG 0.502354 1_2:-23405111 None:intergenic
GTTATCAAGGACACTGCAAT+CGG 0.503421 1_2:+23404865 Msa0063190:CDS
ATTAGGATTAGGAGTAGAAG+AGG 0.503521 1_2:-23403195 None:intergenic
GACACGTGTTATGACTTGAA+TGG 0.504567 1_2:+23405333 Msa0063190:CDS
GTGAGACGTAGTAGAAGCTA+GGG 0.505740 1_2:-23405110 None:intergenic
ATAAACGAAGCAGAAGTAGC+AGG 0.508250 1_2:-23403708 None:intergenic
TTTCCATTGAGGTTGTTGTT+GGG 0.509707 1_2:-23403337 None:intergenic
CTCTTGAAACCATAACCATC+GGG 0.512781 1_2:+23404836 Msa0063190:CDS
AGGACATGGGTCCGCCTCCA+AGG 0.513030 1_2:-23404939 None:intergenic
CATCGGGCGGACCGTTATCA+AGG 0.514418 1_2:+23404852 Msa0063190:CDS
AGGAACCCACATTGCACCTA+CGG 0.516231 1_2:-23405067 None:intergenic
AGTAGAAGCTAGGGTAGAAT+GGG 0.521476 1_2:-23405101 None:intergenic
AGGTGTTGGAAGTGAGAAAG+TGG 0.522851 1_2:-23403252 None:intergenic
CTTGATAACGGTCCGCCCGA+TGG 0.523145 1_2:-23404851 None:intergenic
ATGATGTTGCTTGCCGGAAA+GGG 0.527421 1_2:+23403772 Msa0063190:CDS
GTGTGTTGGTGGTTGGTGAA+GGG 0.527741 1_2:-23403137 None:intergenic
AAAGTTCCAACATCATCGGC+CGG 0.529607 1_2:-23405441 None:intergenic
TGCTCTCTTACTGAGTGTGT+TGG 0.531988 1_2:-23403151 None:intergenic
AACAGTAGGTAACCTGGTAA+TGG 0.534799 1_2:-23405235 None:intergenic
GTAGTATCAGGCACTGAAGA+AGG 0.537673 1_2:+23403543 Msa0063190:CDS
TACTTCTGCTTCGTTTATTG+GGG 0.538816 1_2:+23403713 Msa0063190:CDS
GGAACCCACATTGCACCTAC+GGG 0.543677 1_2:-23405066 None:intergenic
GGCGGACCCATGTCCTTCGT+GGG 0.544126 1_2:+23404946 Msa0063190:CDS
GGGTTGTTAGGCCTTGGAGG+CGG 0.545043 1_2:+23404928 Msa0063190:CDS
TGGAAGTGAGAAAGTGGTGT+TGG 0.549954 1_2:-23403246 None:intergenic
AGGCGGACCCATGTCCTTCG+TGG 0.550405 1_2:+23404945 Msa0063190:CDS
ACCATATACTGATAAATAGC+AGG 0.551497 1_2:-23403603 None:intergenic
GTGAGAAAGTGGTGTTGGAA+AGG 0.553735 1_2:-23403241 None:intergenic
GAATGTTTGTTGGAGCAGCT+GGG 0.555216 1_2:+23404908 Msa0063190:CDS
GCTCTTGAAACCATAACCAT+CGG 0.557569 1_2:+23404835 Msa0063190:CDS
GAAATATTTGTTCGGATATG+GGG 0.560097 1_2:-23405164 None:intergenic
TGTGGATATCAAGTTGCATA+TGG 0.560299 1_2:+23403798 Msa0063190:CDS
GGTGTCCATGACAACTCCTC+CGG 0.560381 1_2:-23405205 None:intergenic
TAGAATGGGTTATGAATGAG+AGG 0.562092 1_2:-23405087 None:intergenic
ACACCGGCACAGCCATTACC+AGG 0.562171 1_2:+23405223 Msa0063190:CDS
GATGATGTTGCTTGCCGGAA+AGG 0.565770 1_2:+23403771 Msa0063190:CDS
CAATTGGCCCACGAAGGACA+TGG 0.567450 1_2:-23404953 None:intergenic
ACAGTATCCAAAAGCTCCGC+CGG 0.570266 1_2:-23404986 None:intergenic
ATGTTTGCTTCAACACACAT+TGG 0.570489 1_2:-23405574 None:intergenic
AAGTTCCAACATCATCGGCC+GGG 0.575288 1_2:-23405440 None:intergenic
ATCAAGTTGCATATGGTGAT+GGG 0.575723 1_2:+23403805 Msa0063190:CDS
TTAGGATTAGGAGTAGAAGA+GGG 0.579457 1_2:-23403194 None:intergenic
TCAGGCACTGAAGAAGGAAG+TGG 0.585180 1_2:+23403549 Msa0063190:CDS
AAGGACACTGCAATCGGGTG+CGG 0.585643 1_2:+23404871 Msa0063190:CDS
TATCAAGTTGCATATGGTGA+TGG 0.587507 1_2:+23403804 Msa0063190:CDS
ACAGAAAGTTCCAACATCAT+CGG 0.592640 1_2:-23405445 None:intergenic
TAAACGAAGCAGAAGTAGCA+GGG 0.592676 1_2:-23403707 None:intergenic
TGATTATAACATTGATCACA+AGG 0.597383 1_2:-23403666 None:intergenic
GGCTCCCAATTGGCCCACGA+AGG 0.597651 1_2:-23404959 None:intergenic
CCGGTTCACTCGAATTTGGA+CGG 0.598382 1_2:+23405034 Msa0063190:CDS
ATAGGGAATATTCAGCAAGA+AGG 0.599831 1_2:+23405504 Msa0063190:CDS
GGATACTGTCTCATCTCTCG+AGG 0.601506 1_2:+23405000 Msa0063190:CDS
TAACCTGGTAATGGCTGTGC+CGG 0.602170 1_2:-23405226 None:intergenic
AAAGCATTGTAGGCAACAGT+AGG 0.603981 1_2:-23405249 None:intergenic
GTAGGCAACAGTAGGTAACC+TGG 0.609612 1_2:-23405241 None:intergenic
AGGAACCGGAGGAGTTGTCA+TGG 0.611224 1_2:+23405200 Msa0063190:CDS
TTATCAAGGACACTGCAATC+GGG 0.611505 1_2:+23404866 Msa0063190:CDS
GGACGGCAGGCAATGCCCGT+AGG 0.611957 1_2:+23405051 Msa0063190:CDS
CAATGCCCGTAGGTGCAATG+TGG 0.613427 1_2:+23405061 Msa0063190:CDS
GGAGGAGTTGTCATGGACAC+CGG 0.619800 1_2:+23405207 Msa0063190:CDS
AATGCCCGTAGGTGCAATGT+GGG 0.623107 1_2:+23405062 Msa0063190:CDS
TTGGTGAAGGGATTTGAGTG+AGG 0.624084 1_2:-23403125 None:intergenic
ATGGAAAGACCAGAAGGTGA+AGG 0.625165 1_2:-23405480 None:intergenic
AATTGGCCCACGAAGGACAT+GGG 0.625280 1_2:-23404952 None:intergenic
GGTGATGGGTCGTCTACCAA+AGG 0.626771 1_2:+23403819 Msa0063190:CDS
ATAGAAACTCTGGGAGCACG+TGG 0.629230 1_2:-23405306 None:intergenic
AGGGATTTGAGTGAGGACTG+AGG 0.629426 1_2:-23403118 None:intergenic
CGACACTGTTGGAACTCGAA+CGG 0.632988 1_2:-23405364 None:intergenic
TGTTGGAAAGGAAATGGAAG+TGG 0.637079 1_2:-23403229 None:intergenic
ATGTTGCTTGCCGGAAAGGG+AGG 0.650168 1_2:+23403775 Msa0063190:CDS
CCTATGATGGAAAGACCAGA+AGG 0.651297 1_2:-23405486 None:intergenic
GGGTGCGGACATTGGAACGA+GGG 0.652299 1_2:+23404886 Msa0063190:CDS
CAATTGGGAGCCCAAACCGG+CGG 0.653313 1_2:+23404970 Msa0063190:CDS
CGGGTGCGGACATTGGAACG+AGG 0.653686 1_2:+23404885 Msa0063190:CDS
TTAACTGATATAGGAACCGG+AGG 0.677821 1_2:+23405189 Msa0063190:CDS
TTGAAACCATAACCATCGGG+CGG 0.703144 1_2:+23404839 Msa0063190:CDS
GCTTGCCGGAAAGGGAGGTG+TGG 0.712007 1_2:+23403780 Msa0063190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTAAAATTTTTAGATTA+TGG + chr1_2:23404450-23404469 Msa0063190:intron 10.0%
!!! TTTTAGATGATGTTTATATT+AGG + chr1_2:23403956-23403975 Msa0063190:intron 15.0%
!!! AGATTTTAATTTAACATGTT+TGG + chr1_2:23404020-23404039 Msa0063190:intron 15.0%
!! TGATAAAGAATTAATTGTAA+AGG + chr1_2:23404353-23404372 Msa0063190:intron 15.0%
!! AAAATAAAGTGATTTATGTT+TGG - chr1_2:23404617-23404636 None:intergenic 15.0%
!!! TATTTTGTTAGAATAGGAAT+TGG + chr1_2:23403576-23403595 Msa0063190:CDS 20.0%
!!! AGACAAAATTGATTCTAAAA+GGG + chr1_2:23403993-23404012 Msa0063190:intron 20.0%
!!! TGTATGTTTGGTTTTATTTT+TGG + chr1_2:23404329-23404348 Msa0063190:intron 20.0%
!!! AAATTTTTAGATTATGGCTA+AGG + chr1_2:23404456-23404475 Msa0063190:intron 20.0%
!!! ATTAGCTTGATTCTATAAAA+TGG - chr1_2:23404659-23404678 None:intergenic 20.0%
!! TCTTTATGTAATCTGATTAT+TGG + chr1_2:23404786-23404805 Msa0063190:intron 20.0%
!! AGTTAACTGAAATATTTGTT+CGG - chr1_2:23405175-23405194 None:intergenic 20.0%
!! ATATTTCAGTTAACTGATAT+AGG + chr1_2:23405180-23405199 Msa0063190:CDS 20.0%
!!! TTTATAGTTAGCTTTTTCTA+TGG + chr1_2:23405702-23405721 Msa0063190:three_prime_UTR 20.0%
!!! TTGTTTTTTTGGTGTTTTTG+AGG - chr1_2:23403392-23403411 None:intergenic 25.0%
!! GGTGAATATTTTGTTAGAAT+AGG + chr1_2:23403570-23403589 Msa0063190:CDS 25.0%
! TGATTATAACATTGATCACA+AGG - chr1_2:23403669-23403688 None:intergenic 25.0%
!! TATATTAGGTTCCATTTTAG+AGG + chr1_2:23403970-23403989 Msa0063190:intron 25.0%
!! GAGACAAAATTGATTCTAAA+AGG + chr1_2:23403992-23404011 Msa0063190:intron 25.0%
!! AATTATCATTTCCCCTTTTT+CGG - chr1_2:23404259-23404278 None:intergenic 25.0%
!!! GGTGTAAAATTGATTTTGAT+AGG + chr1_2:23404374-23404393 Msa0063190:intron 25.0%
!!! TGTTTTAAGTACATTGTTCA+AGG - chr1_2:23404571-23404590 None:intergenic 25.0%
! AAAGAGTAGAATAAAATGCA+TGG + chr1_2:23404761-23404780 Msa0063190:intron 25.0%
! TGAAATATTTGTTCGGATAT+GGG - chr1_2:23405168-23405187 None:intergenic 25.0%
!!! AAATTCGAGATTGTTTTAGT+GGG - chr1_2:23405612-23405631 None:intergenic 25.0%
!!! AAAATTCGAGATTGTTTTAG+TGG - chr1_2:23405613-23405632 None:intergenic 25.0%
!! ACTAAAACAATCTCGAATTT+TGG + chr1_2:23405612-23405631 Msa0063190:three_prime_UTR 25.0%
! TTAGTGCTGTTATTAGGATT+AGG - chr1_2:23403209-23403228 None:intergenic 30.0%
! AGATTGCGTTTTCTACATTT+AGG - chr1_2:23403275-23403294 None:intergenic 30.0%
!!! TTATGGTTTTGTTGTTTGAG+TGG - chr1_2:23403315-23403334 None:intergenic 30.0%
!!! AACAGTTTTGTTTTCCATTG+AGG - chr1_2:23403351-23403370 None:intergenic 30.0%
!!! TGTTTTGTGGGTTGTTTTTT+TGG - chr1_2:23403403-23403422 None:intergenic 30.0%
! TCCTGCTATTTATCAGTATA+TGG + chr1_2:23403602-23403621 Msa0063190:CDS 30.0%
ACCATATACTGATAAATAGC+AGG - chr1_2:23403606-23403625 None:intergenic 30.0%
ATTCAGGAAGTGATATTGTT+TGG + chr1_2:23403631-23403650 Msa0063190:CDS 30.0%
AACAAAGCAAGAAAAATGTG+TGG - chr1_2:23403880-23403899 None:intergenic 30.0%
!! CAATTTTGTCTCCTCTAAAA+TGG - chr1_2:23403984-23404003 None:intergenic 30.0%
ATTCACATTGAGTGTATGTT+TGG + chr1_2:23404317-23404336 Msa0063190:intron 30.0%
! TTGGTTTCCAATGTTGATAA+AGG + chr1_2:23404805-23404824 Msa0063190:intron 30.0%
! TGGTTTCCAATGTTGATAAA+GGG + chr1_2:23404806-23404825 Msa0063190:intron 30.0%
GAAATATTTGTTCGGATATG+GGG - chr1_2:23405167-23405186 None:intergenic 30.0%
CTGAAATATTTGTTCGGATA+TGG - chr1_2:23405169-23405188 None:intergenic 30.0%
GTGTCAAAAATAGAAACTCT+GGG - chr1_2:23405318-23405337 None:intergenic 30.0%
GAAAAATAAAACGACACTGT+TGG - chr1_2:23405378-23405397 None:intergenic 30.0%
!!! ACAGTGTCGTTTTATTTTTC+AGG + chr1_2:23405378-23405397 Msa0063190:CDS 30.0%
TTTCTATCGATGGAACTAAT+GGG + chr1_2:23405535-23405554 Msa0063190:CDS 30.0%
!!! AATTCGAGATTGTTTTAGTG+GGG - chr1_2:23405611-23405630 None:intergenic 30.0%
TTAGGATTAGGAGTAGAAGA+GGG - chr1_2:23403197-23403216 None:intergenic 35.0%
ATTAGGATTAGGAGTAGAAG+AGG - chr1_2:23403198-23403217 None:intergenic 35.0%
! AAGTGGTTAGTGCTGTTATT+AGG - chr1_2:23403215-23403234 None:intergenic 35.0%
! CGTTTTCTACATTTAGGTGT+TGG - chr1_2:23403269-23403288 None:intergenic 35.0%
! TTTCCATTGAGGTTGTTGTT+GGG - chr1_2:23403340-23403359 None:intergenic 35.0%
! TTTTCCATTGAGGTTGTTGT+TGG - chr1_2:23403341-23403360 None:intergenic 35.0%
!! TGAGTTGAAACGTGTTTTGT+GGG - chr1_2:23403415-23403434 None:intergenic 35.0%
!! TGTTTTTGTTGAGACGGTTA+AGG - chr1_2:23403473-23403492 None:intergenic 35.0%
!! CTTGTGTGTTTTTGTTGAGA+CGG - chr1_2:23403479-23403498 None:intergenic 35.0%
TTTGGATCTGATGTAGTATC+AGG + chr1_2:23403531-23403550 Msa0063190:CDS 35.0%
CAGTATATGGTGATAGATTC+AGG + chr1_2:23403615-23403634 Msa0063190:CDS 35.0%
GAAGTAGCAGGGTTAAAAAT+AGG - chr1_2:23403699-23403718 None:intergenic 35.0%
CTACTTCTGCTTCGTTTATT+GGG + chr1_2:23403712-23403731 Msa0063190:CDS 35.0%
TACTTCTGCTTCGTTTATTG+GGG + chr1_2:23403713-23403732 Msa0063190:CDS 35.0%
! TGTGGATATCAAGTTGCATA+TGG + chr1_2:23403798-23403817 Msa0063190:CDS 35.0%
! TATCAAGTTGCATATGGTGA+TGG + chr1_2:23403804-23403823 Msa0063190:CDS 35.0%
! ATCAAGTTGCATATGGTGAT+GGG + chr1_2:23403805-23403824 Msa0063190:CDS 35.0%
CACCAAACATAACCGAAAAA+GGG + chr1_2:23404244-23404263 Msa0063190:intron 35.0%
ACCAAACATAACCGAAAAAG+GGG + chr1_2:23404245-23404264 Msa0063190:intron 35.0%
TTTGATAGGTTTGATTGCTC+TGG + chr1_2:23404388-23404407 Msa0063190:intron 35.0%
!! TAGAATGGGTTATGAATGAG+AGG - chr1_2:23405090-23405109 None:intergenic 35.0%
CAGTTAACTGATATAGGAAC+CGG + chr1_2:23405186-23405205 Msa0063190:CDS 35.0%
CGTGTCAAAAATAGAAACTC+TGG - chr1_2:23405319-23405338 None:intergenic 35.0%
!!! GTGTCGTTTTATTTTTCAGG+TGG + chr1_2:23405381-23405400 Msa0063190:CDS 35.0%
ACAGAAAGTTCCAACATCAT+CGG - chr1_2:23405448-23405467 None:intergenic 35.0%
TTGCTGAATATTCCCTATGA+TGG - chr1_2:23405502-23405521 None:intergenic 35.0%
ATAGGGAATATTCAGCAAGA+AGG + chr1_2:23405504-23405523 Msa0063190:CDS 35.0%
! GGAATTCAAGTTTCTATCGA+TGG + chr1_2:23405525-23405544 Msa0063190:CDS 35.0%
GTTTCTATCGATGGAACTAA+TGG + chr1_2:23405534-23405553 Msa0063190:CDS 35.0%
!! ACTAATGGGTTTGTAGGATT+TGG + chr1_2:23405549-23405568 Msa0063190:CDS 35.0%
TGTTTGCTTCAACACACATT+GGG - chr1_2:23405576-23405595 None:intergenic 35.0%
ATGTTTGCTTCAACACACAT+TGG - chr1_2:23405577-23405596 None:intergenic 35.0%
TGTTGGAAAGGAAATGGAAG+TGG - chr1_2:23403232-23403251 None:intergenic 40.0%
! AAGTGGTGTTGGAAAGGAAA+TGG - chr1_2:23403238-23403257 None:intergenic 40.0%
! GAGGTTGTTGTTGGGTATTA+TGG - chr1_2:23403332-23403351 None:intergenic 40.0%
ATACCCAACAACAACCTCAA+TGG + chr1_2:23403334-23403353 Msa0063190:CDS 40.0%
!! GTGAGTTGAAACGTGTTTTG+TGG - chr1_2:23403416-23403435 None:intergenic 40.0%
! TTTTGTTGAGACGGTTAAGG+AGG - chr1_2:23403470-23403489 None:intergenic 40.0%
!! ACAGCAACAGAAGCTAGTTT+TGG + chr1_2:23403513-23403532 Msa0063190:CDS 40.0%
TAAACGAAGCAGAAGTAGCA+GGG - chr1_2:23403710-23403729 None:intergenic 40.0%
ATAAACGAAGCAGAAGTAGC+AGG - chr1_2:23403711-23403730 None:intergenic 40.0%
GCTACTTCTGCTTCGTTTAT+TGG + chr1_2:23403711-23403730 Msa0063190:CDS 40.0%
!! TTGATGATGATGTTGCTTGC+CGG + chr1_2:23403766-23403785 Msa0063190:CDS 40.0%
CTTCACACAGTACATACCTT+TGG - chr1_2:23403838-23403857 None:intergenic 40.0%
GCACCAAACATAACCGAAAA+AGG + chr1_2:23404243-23404262 Msa0063190:intron 40.0%
!!! TCCCCTTTTTCGGTTATGTT+TGG - chr1_2:23404249-23404268 None:intergenic 40.0%
AAGCGTCCCTTTATCAACAT+TGG - chr1_2:23404815-23404834 None:intergenic 40.0%
GCTCTTGAAACCATAACCAT+CGG + chr1_2:23404835-23404854 Msa0063190:CDS 40.0%
CTCTTGAAACCATAACCATC+GGG + chr1_2:23404836-23404855 Msa0063190:CDS 40.0%
GATTGCAGTGTCCTTGATAA+CGG - chr1_2:23404866-23404885 None:intergenic 40.0%
GTTATCAAGGACACTGCAAT+CGG + chr1_2:23404865-23404884 Msa0063190:CDS 40.0%
TTATCAAGGACACTGCAATC+GGG + chr1_2:23404866-23404885 Msa0063190:CDS 40.0%
AGTAGAAGCTAGGGTAGAAT+GGG - chr1_2:23405104-23405123 None:intergenic 40.0%
TAGTAGAAGCTAGGGTAGAA+TGG - chr1_2:23405105-23405124 None:intergenic 40.0%
CTTCTACTACGTCTCACTTT+CGG + chr1_2:23405116-23405135 Msa0063190:CDS 40.0%
TTCTACTACGTCTCACTTTC+GGG + chr1_2:23405117-23405136 Msa0063190:CDS 40.0%
TTAACTGATATAGGAACCGG+AGG + chr1_2:23405189-23405208 Msa0063190:CDS 40.0%
AACAGTAGGTAACCTGGTAA+TGG - chr1_2:23405238-23405257 None:intergenic 40.0%
!! AAAGCATTGTAGGCAACAGT+AGG - chr1_2:23405252-23405271 None:intergenic 40.0%
GACACGTGTTATGACTTGAA+TGG + chr1_2:23405333-23405352 Msa0063190:CDS 40.0%
CAAAAAATTCCTGGCAGGAA+AGG - chr1_2:23405418-23405437 None:intergenic 40.0%
!!! TGCCAGGAATTTTTTGATCC+CGG + chr1_2:23405422-23405441 Msa0063190:CDS 40.0%
! CTTCTGGTCTTTCCATCATA+GGG + chr1_2:23405487-23405506 Msa0063190:CDS 40.0%
!! GATGGAACTAATGGGTTTGT+AGG + chr1_2:23405543-23405562 Msa0063190:CDS 40.0%
TTGGTGAAGGGATTTGAGTG+AGG - chr1_2:23403128-23403147 None:intergenic 45.0%
!! TTACTGAGTGTGTTGGTGGT+TGG - chr1_2:23403147-23403166 None:intergenic 45.0%
TCTCTTACTGAGTGTGTTGG+TGG - chr1_2:23403151-23403170 None:intergenic 45.0%
TGCTCTCTTACTGAGTGTGT+TGG - chr1_2:23403154-23403173 None:intergenic 45.0%
! GTGAGAAAGTGGTGTTGGAA+AGG - chr1_2:23403244-23403263 None:intergenic 45.0%
TGGAAGTGAGAAAGTGGTGT+TGG - chr1_2:23403249-23403268 None:intergenic 45.0%
!! AGGTGTTGGAAGTGAGAAAG+TGG - chr1_2:23403255-23403274 None:intergenic 45.0%
!! GTAGTATCAGGCACTGAAGA+AGG + chr1_2:23403543-23403562 Msa0063190:CDS 45.0%
TTCTGCTTCGTTTATTGGGG+TGG + chr1_2:23403716-23403735 Msa0063190:CDS 45.0%
! ATGATGTTGCTTGCCGGAAA+GGG + chr1_2:23403772-23403791 Msa0063190:CDS 45.0%
TTGAAACCATAACCATCGGG+CGG + chr1_2:23404839-23404858 Msa0063190:CDS 45.0%
TGGAACGAGGGAATGTTTGT+TGG + chr1_2:23404898-23404917 Msa0063190:CDS 45.0%
! GAATGTTTGTTGGAGCAGCT+GGG + chr1_2:23404908-23404927 Msa0063190:CDS 45.0%
TCATCCGGTTCACTCGAATT+TGG + chr1_2:23405030-23405049 Msa0063190:CDS 45.0%
GTGAGACGTAGTAGAAGCTA+GGG - chr1_2:23405113-23405132 None:intergenic 45.0%
AGTGAGACGTAGTAGAAGCT+AGG - chr1_2:23405114-23405133 None:intergenic 45.0%
!! TGCATCGCGAAAAGCATTGT+AGG - chr1_2:23405262-23405281 None:intergenic 45.0%
AAATCTTGACCTTTCCTGCC+AGG + chr1_2:23405406-23405425 Msa0063190:CDS 45.0%
GGGATCAAAAAATTCCTGGC+AGG - chr1_2:23405423-23405442 None:intergenic 45.0%
AAAGTTCCAACATCATCGGC+CGG - chr1_2:23405444-23405463 None:intergenic 45.0%
ATGGAAAGACCAGAAGGTGA+AGG - chr1_2:23405483-23405502 None:intergenic 45.0%
! CCTATGATGGAAAGACCAGA+AGG - chr1_2:23405489-23405508 None:intergenic 45.0%
! CCTTCTGGTCTTTCCATCAT+AGG + chr1_2:23405486-23405505 Msa0063190:CDS 45.0%
!!! TAGAAAATTTTAAAATAAAT+TGG - chr1_2:23404686-23404705 None:intergenic 5.0%
GAGTGAGGACTGAGGAATGA+TGG - chr1_2:23403113-23403132 None:intergenic 50.0%
AGGGATTTGAGTGAGGACTG+AGG - chr1_2:23403121-23403140 None:intergenic 50.0%
!! GTGTGTTGGTGGTTGGTGAA+GGG - chr1_2:23403140-23403159 None:intergenic 50.0%
!! AGTGTGTTGGTGGTTGGTGA+AGG - chr1_2:23403141-23403160 None:intergenic 50.0%
!! TCAGGCACTGAAGAAGGAAG+TGG + chr1_2:23403549-23403568 Msa0063190:CDS 50.0%
! GATGATGTTGCTTGCCGGAA+AGG + chr1_2:23403771-23403790 Msa0063190:CDS 50.0%
GATATCCACACCTCCCTTTC+CGG - chr1_2:23403788-23403807 None:intergenic 50.0%
! GGAATGTTTGTTGGAGCAGC+TGG + chr1_2:23404907-23404926 Msa0063190:CDS 50.0%
AATTGGCCCACGAAGGACAT+GGG - chr1_2:23404955-23404974 None:intergenic 50.0%
ATGTCCTTCGTGGGCCAATT+GGG + chr1_2:23404955-23404974 Msa0063190:CDS 50.0%
ACAGTATCCAAAAGCTCCGC+CGG - chr1_2:23404989-23405008 None:intergenic 50.0%
GGATACTGTCTCATCTCTCG+AGG + chr1_2:23405000-23405019 Msa0063190:CDS 50.0%
CCGTCCAAATTCGAGTGAAC+CGG - chr1_2:23405037-23405056 None:intergenic 50.0%
CCGGTTCACTCGAATTTGGA+CGG + chr1_2:23405034-23405053 Msa0063190:CDS 50.0%
TTCACTCGAATTTGGACGGC+AGG + chr1_2:23405038-23405057 Msa0063190:CDS 50.0%
AATGCCCGTAGGTGCAATGT+GGG + chr1_2:23405062-23405081 Msa0063190:CDS 50.0%
AGGAACCCACATTGCACCTA+CGG - chr1_2:23405070-23405089 None:intergenic 50.0%
! TCACTTTCGGGTCTTGCAGT+TGG + chr1_2:23405129-23405148 Msa0063190:CDS 50.0%
!! TAACCTGGTAATGGCTGTGC+CGG - chr1_2:23405229-23405248 None:intergenic 50.0%
GTAGGCAACAGTAGGTAACC+TGG - chr1_2:23405244-23405263 None:intergenic 50.0%
! ATAGAAACTCTGGGAGCACG+TGG - chr1_2:23405309-23405328 None:intergenic 50.0%
CGACACTGTTGGAACTCGAA+CGG - chr1_2:23405367-23405386 None:intergenic 50.0%
GGCCGGGATCAAAAAATTCC+TGG - chr1_2:23405427-23405446 None:intergenic 50.0%
AAGTTCCAACATCATCGGCC+GGG - chr1_2:23405443-23405462 None:intergenic 50.0%
GCATTTGCTCCTTCACCTTC+TGG + chr1_2:23405471-23405490 Msa0063190:CDS 50.0%
! ATGTTGCTTGCCGGAAAGGG+AGG + chr1_2:23403775-23403794 Msa0063190:CDS 55.0%
!! GGTGATGGGTCGTCTACCAA+AGG + chr1_2:23403819-23403838 Msa0063190:CDS 55.0%
AAGGACACTGCAATCGGGTG+CGG + chr1_2:23404871-23404890 Msa0063190:CDS 55.0%
GTTGGAGCAGCTGGGTTGTT+AGG + chr1_2:23404916-23404935 Msa0063190:CDS 55.0%
CAATTGGCCCACGAAGGACA+TGG - chr1_2:23404956-23404975 None:intergenic 55.0%
CATGTCCTTCGTGGGCCAAT+TGG + chr1_2:23404954-23404973 Msa0063190:CDS 55.0%
!! TCCAAAAGCTCCGCCGGTTT+GGG - chr1_2:23404983-23405002 None:intergenic 55.0%
! ATCCAAAAGCTCCGCCGGTT+TGG - chr1_2:23404984-23405003 None:intergenic 55.0%
TGTCTCATCTCTCGAGGCAC+TGG + chr1_2:23405006-23405025 Msa0063190:CDS 55.0%
!! TCTCGAGGCACTGGATCATC+CGG + chr1_2:23405015-23405034 Msa0063190:CDS 55.0%
CAATGCCCGTAGGTGCAATG+TGG + chr1_2:23405061-23405080 Msa0063190:CDS 55.0%
GGAACCCACATTGCACCTAC+GGG - chr1_2:23405069-23405088 None:intergenic 55.0%
! CTTTCGGGTCTTGCAGTTGG+AGG + chr1_2:23405132-23405151 Msa0063190:CDS 55.0%
AGGAACCGGAGGAGTTGTCA+TGG + chr1_2:23405200-23405219 Msa0063190:CDS 55.0%
GGTGTCCATGACAACTCCTC+CGG - chr1_2:23405208-23405227 None:intergenic 55.0%
GGAGGAGTTGTCATGGACAC+CGG + chr1_2:23405207-23405226 Msa0063190:CDS 55.0%
TTGATCCCGGCCGATGATGT+TGG + chr1_2:23405435-23405454 Msa0063190:CDS 55.0%
AACGGTCCGCCCGATGGTTA+TGG - chr1_2:23404848-23404867 None:intergenic 60.0%
!! CTTGATAACGGTCCGCCCGA+TGG - chr1_2:23404854-23404873 None:intergenic 60.0%
CATCGGGCGGACCGTTATCA+AGG + chr1_2:23404852-23404871 Msa0063190:CDS 60.0%
CTGCAATCGGGTGCGGACAT+TGG + chr1_2:23404878-23404897 Msa0063190:CDS 60.0%
GGGTGCGGACATTGGAACGA+GGG + chr1_2:23404886-23404905 Msa0063190:CDS 60.0%
GCAGCTGGGTTGTTAGGCCT+TGG + chr1_2:23404922-23404941 Msa0063190:CDS 60.0%
GCTGGGTTGTTAGGCCTTGG+AGG + chr1_2:23404925-23404944 Msa0063190:CDS 60.0%
GGGTTGTTAGGCCTTGGAGG+CGG + chr1_2:23404928-23404947 Msa0063190:CDS 60.0%
GGCCAATTGGGAGCCCAAAC+CGG + chr1_2:23404967-23404986 Msa0063190:CDS 60.0%
CAATTGGGAGCCCAAACCGG+CGG + chr1_2:23404970-23404989 Msa0063190:CDS 60.0%
ACACCGGCACAGCCATTACC+AGG + chr1_2:23405223-23405242 Msa0063190:CDS 60.0%
GCTTGCCGGAAAGGGAGGTG+TGG + chr1_2:23403780-23403799 Msa0063190:CDS 65.0%
CGGGTGCGGACATTGGAACG+AGG + chr1_2:23404885-23404904 Msa0063190:CDS 65.0%
AGGACATGGGTCCGCCTCCA+AGG - chr1_2:23404942-23404961 None:intergenic 65.0%
AGGCGGACCCATGTCCTTCG+TGG + chr1_2:23404945-23404964 Msa0063190:CDS 65.0%
GGCGGACCCATGTCCTTCGT+GGG + chr1_2:23404946-23404965 Msa0063190:CDS 65.0%
GGCTCCCAATTGGCCCACGA+AGG - chr1_2:23404962-23404981 None:intergenic 65.0%
!! CGCCGGTTTGGGCTCCCAAT+TGG - chr1_2:23404972-23404991 None:intergenic 65.0%
! GCCCAAACCGGCGGAGCTTT+TGG + chr1_2:23404979-23404998 Msa0063190:CDS 65.0%
GGACGGCAGGCAATGCCCGT+AGG + chr1_2:23405051-23405070 Msa0063190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 23403047 23405727 23403047 ID=Msa0063190;Name=Msa0063190
chr1_2 mRNA 23403047 23405727 23403047 ID=Msa0063190-mRNA-1;Parent=Msa0063190;Name=Msa0063190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=133|1|1|1|1|1|2|140|473
chr1_2 exon 23403047 23403840 23403047 ID=Msa0063190-mRNA-1:exon:8513;Parent=Msa0063190-mRNA-1
chr1_2 exon 23404827 23405727 23404827 ID=Msa0063190-mRNA-1:exon:8514;Parent=Msa0063190-mRNA-1
chr1_2 five_prime_UTR 23403047 23403179 23403047 ID=Msa0063190-mRNA-1:five_prime_utr;Parent=Msa0063190-mRNA-1
chr1_2 CDS 23403180 23403840 23403180 ID=Msa0063190-mRNA-1:cds;Parent=Msa0063190-mRNA-1
chr1_2 CDS 23404827 23405587 23404827 ID=Msa0063190-mRNA-1:cds;Parent=Msa0063190-mRNA-1
chr1_2 three_prime_UTR 23405588 23405727 23405588 ID=Msa0063190-mRNA-1:three_prime_utr;Parent=Msa0063190-mRNA-1
Gene Sequence

>Msa0063190

ATGCTGCTTCAGTTCCCTCTTCTACTCCTAATCCTAATAACAGCACTAACCACTTCCATTTCCTTTCCAACACCACTTTCTCACTTCCAACACCTAAATGTAGAAAACGCAATCTCAGAAACAAAACTAAAACCACTCAAACAACAAAACCATAATACCCAACAACAACCTCAATGGAAAACAAAACTGTTTCACAGAGACAACATAAACCTCAAAAACACCAAAAAAACAACCCACAAAACACGTTTCAACTCACGTATCAACAGAGACATAAAAAGAGTAACATTCCTCCTTAACCGTCTCAACAAAAACACACAAGAAGAACAAACAACAACAGCAACAGAAGCTAGTTTTGGATCTGATGTAGTATCAGGCACTGAAGAAGGAAGTGGTGAATATTTTGTTAGAATAGGAATTGGTAGTCCTGCTATTTATCAGTATATGGTGATAGATTCAGGAAGTGATATTGTTTGGATTCAATGTGAACCTTGTGATCAATGTTATAATCAAACTGATCCTATTTTTAACCCTGCTACTTCTGCTTCGTTTATTGGGGTGGCTTGTTCTTCTAATGTTTGTAATCAGCTTGATGATGATGTTGCTTGCCGGAAAGGGAGGTGTGGATATCAAGTTGCATATGGTGATGGGTCGTCTACCAAAGGGACGCTTGCTCTTGAAACCATAACCATCGGGCGGACCGTTATCAAGGACACTGCAATCGGGTGCGGACATTGGAACGAGGGAATGTTTGTTGGAGCAGCTGGGTTGTTAGGCCTTGGAGGCGGACCCATGTCCTTCGTGGGCCAATTGGGAGCCCAAACCGGCGGAGCTTTTGGATACTGTCTCATCTCTCGAGGCACTGGATCATCCGGTTCACTCGAATTTGGACGGCAGGCAATGCCCGTAGGTGCAATGTGGGTTCCTCTCATTCATAACCCATTCTACCCTAGCTTCTACTACGTCTCACTTTCGGGTCTTGCAGTTGGAGGCATTCGAGTCCCCATATCCGAACAAATATTTCAGTTAACTGATATAGGAACCGGAGGAGTTGTCATGGACACCGGCACAGCCATTACCAGGTTACCTACTGTTGCCTACAATGCTTTTCGCGATGCATTTATTGCTCAGACAACAAACTTGCCACGTGCTCCCAGAGTTTCTATTTTTGACACGTGTTATGACTTGAATGGTTTTGTTACCGTTCGAGTTCCAACAGTGTCGTTTTATTTTTCAGGTGGTCAAATCTTGACCTTTCCTGCCAGGAATTTTTTGATCCCGGCCGATGATGTTGGAACTTTCTGTTTTGCATTTGCTCCTTCACCTTCTGGTCTTTCCATCATAGGGAATATTCAGCAAGAAGGAATTCAAGTTTCTATCGATGGAACTAATGGGTTTGTAGGATTTGGACCCAATGTGTGTTGA

Protein sequence

>Msa0063190

MLLQFPLLLLILITALTTSISFPTPLSHFQHLNVENAISETKLKPLKQQNHNTQQQPQWKTKLFHRDNINLKNTKKTTHKTRFNSRINRDIKRVTFLLNRLNKNTQEEQTTTATEASFGSDVVSGTEEGSGEYFVRIGIGSPAIYQYMVIDSGSDIVWIQCEPCDQCYNQTDPIFNPATSASFIGVACSSNVCNQLDDDVACRKGRCGYQVAYGDGSSTKGTLALETITIGRTVIKDTAIGCGHWNEGMFVGAAGLLGLGGGPMSFVGQLGAQTGGAFGYCLISRGTGSSGSLEFGRQAMPVGAMWVPLIHNPFYPSFYYVSLSGLAVGGIRVPISEQIFQLTDIGTGGVVMDTGTAITRLPTVAYNAFRDAFIAQTTNLPRAPRVSIFDTCYDLNGFVTVRVPTVSFYFSGGQILTFPARNFLIPADDVGTFCFAFAPSPSGLSIIGNIQQEGIQVSIDGTNGFVGFGPNVC*