AlfalfaGEDB | Msa0134830

M. sativa cultivar zhongmu-4 / Msa0134830

KEGG: -
GO: -
PFAM: PF00650.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134830	XP_003592402.1	95.169	414	10	3	1	413	1	405	0.0	798

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134830	sp\|Q55CU8\|PITC_DICDI	28.571	210	145	4	2	207	35	243	2.29e-17	86.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134830	G7ID63	95.169	414	10	3	1	413	1	405	0.0	798

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0063190	Msa0134830	0.807339	5.304626e-50	-8.615850e-47
Msa0084990	Msa0134830	0.834129	3.583569e-56	-8.615850e-47
Msa0086250	Msa0134830	0.835301	1.816994e-56	-8.615850e-47
Msa0134830	Msa0134930	0.895106	1.312594e-75	-8.615850e-47
Msa0134830	Msa0173380	0.834890	2.307134e-56	-8.615850e-47
Msa0134830	Msa0177830	0.836673	8.151070e-57	-8.615850e-47
Msa0134830	Msa0177970	0.843512	1.338581e-58	-8.615850e-47
Msa0134830	Msa0191570	0.844657	6.602404e-59	-8.615850e-47
Msa0134830	Msa0192830	0.807577	4.723527e-50	-8.615850e-47
Msa0134830	Msa0221180	0.800968	1.123543e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134830	MtrunA17_Chr1g0205531	95.169	414	10	3	1	413	1	405	0.0	798
Msa0134830	MtrunA17_Chr3g0131581	30.198	202	127	4	12	208	44	236	7.53e-22	94.4
Msa0134830	MtrunA17_Chr1g0155071	29.798	198	132	4	9	203	13	206	1.52e-20	91.3
Msa0134830	MtrunA17_Chr8g0385691	27.778	198	137	3	12	208	24	216	5.46e-20	89.0
Msa0134830	MtrunA17_Chr8g0385681	26.471	204	144	3	6	208	21	219	2.91e-19	86.7
Msa0134830	MtrunA17_Chr3g0115591	28.856	201	136	3	8	207	21	215	6.96e-19	87.0
Msa0134830	MtrunA17_Chr5g0425421	27.586	203	138	4	7	207	17	212	2.23e-18	85.5
Msa0134830	MtrunA17_Chr7g0254621	29.570	186	127	2	19	203	24	206	1.15e-17	83.6
Msa0134830	MtrunA17_Chr8g0373391	27.273	198	125	5	19	207	23	210	7.72e-15	74.7
Msa0134830	MtrunA17_Chr4g0058811	25.478	157	115	2	45	200	77	232	2.77e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134830	AT1G05370.1	63.488	430	127	11	1	413	1	417	1.18e-178	504
Msa0134830	AT3G22410.1	60.952	420	137	13	1	413	1	400	2.35e-164	468
Msa0134830	AT1G75170.2	33.005	203	128	5	9	207	13	211	2.23e-22	97.1
Msa0134830	AT1G75170.1	33.005	203	128	5	9	207	13	211	2.23e-22	97.1
Msa0134830	AT4G08690.2	31.795	195	126	3	10	203	17	205	2.54e-22	96.7
Msa0134830	AT4G08690.1	31.795	195	126	3	10	203	17	205	2.54e-22	96.7
Msa0134830	AT4G08690.3	31.795	195	126	3	10	203	17	205	2.54e-22	96.7
Msa0134830	AT1G22180.2	31.492	181	120	2	28	207	35	212	2.88e-22	97.1
Msa0134830	AT1G22180.4	31.492	181	120	2	28	207	35	212	2.88e-22	97.1
Msa0134830	AT1G01630.1	25.962	208	147	4	3	208	17	219	3.00e-17	81.3

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Find 119 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTACCAAAACAGGTC+TGG	0.482409	1_3:+66391256	None:intergenic
AAACCATGGTACCTTAGCCT+AGG	0.608161	1_3:-66389012	Msa0134830:CDS
AAACGGAAAGGTGAGTGTGA+CGG	0.648731	1_3:+66388596	None:intergenic
AAACGGTTTCTGAAAGTGAA+AGG	0.582881	1_3:-66391809	Msa0134830:CDS
AAATATCATATGAATGAATA+AGG	0.260705	1_3:+66392128	None:intergenic
AACAAGCCTTTCCTGCTGGC+TGG	0.423706	1_3:+66388862	None:intergenic
AACACATCATCGTCCAAAGT+GGG	0.630292	1_3:-66388982	Msa0134830:CDS
AACCCCTCTCACTGTCAAAC+AGG	0.415234	1_3:-66391940	Msa0134830:intron
AACTAAGAGCTTGTCTTTCA+TGG	0.260163	1_3:-66391760	Msa0134830:CDS
AACTCGACTCACTCAAACCA+TGG	0.579927	1_3:-66389026	Msa0134830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGAATAATAGTTCTCTTGT+TGG	-	chr1_3:66388445-66388464	Msa0134830:three_prime_UTR	30.0%
GAAAACACAAAAAGAGAAGT+CGG	+	chr1_3:66388914-66388933	None:intergenic	30.0%
GGGATTTGAATTTGGTTAAT+TGG	-	chr1_3:66389405-66389424	Msa0134830:intron	30.0%
GAAAGAAACAGAAAAGATTG+AGG	-	chr1_3:66389817-66389836	Msa0134830:intron	30.0%
AGAAACAATAAATGAGAGAG+TGG	-	chr1_3:66389844-66389863	Msa0134830:intron	30.0%
TTTGGAAAACTCTGTTTGTT+AGG	-	chr1_3:66389875-66389894	Msa0134830:intron	30.0%
TACTACAGTACATGTTAGAA+AGG	-	chr1_3:66389982-66390001	Msa0134830:intron	30.0%
ACTACAGTACATGTTAGAAA+GGG	-	chr1_3:66389983-66390002	Msa0134830:intron	30.0%
GAAATAGACCAATTGTGATA+GGG	+	chr1_3:66390043-66390062	None:intergenic	30.0%
TGAAATAGACCAATTGTGAT+AGG	+	chr1_3:66390044-66390063	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	66388333	66392217	66388333	ID=Msa0134830;Name=Msa0134830
chr1_3	mRNA	66388333	66392217	66388333	ID=Msa0134830-mRNA-1;Parent=Msa0134830;Name=Msa0134830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=178\|1\|1\|1\|1\|1\|7\|249\|413
chr1_3	exon	66388333	66389244	66388333	ID=Msa0134830-mRNA-1:exon:22682;Parent=Msa0134830-mRNA-1
chr1_3	exon	66390165	66390298	66390165	ID=Msa0134830-mRNA-1:exon:22681;Parent=Msa0134830-mRNA-1
chr1_3	exon	66390859	66390950	66390859	ID=Msa0134830-mRNA-1:exon:22680;Parent=Msa0134830-mRNA-1
chr1_3	exon	66391064	66391110	66391064	ID=Msa0134830-mRNA-1:exon:22679;Parent=Msa0134830-mRNA-1
chr1_3	exon	66391265	66391353	66391265	ID=Msa0134830-mRNA-1:exon:22678;Parent=Msa0134830-mRNA-1
chr1_3	exon	66391741	66391858	66391741	ID=Msa0134830-mRNA-1:exon:22677;Parent=Msa0134830-mRNA-1
chr1_3	exon	66391941	66392217	66391941	ID=Msa0134830-mRNA-1:exon:22676;Parent=Msa0134830-mRNA-1
chr1_3	five_prime_UTR	66392040	66392217	66392040	ID=Msa0134830-mRNA-1:five_prime_utr;Parent=Msa0134830-mRNA-1
chr1_3	CDS	66391941	66392039	66391941	ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1
chr1_3	CDS	66391741	66391858	66391741	ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1
chr1_3	CDS	66391265	66391353	66391265	ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1
chr1_3	CDS	66391064	66391110	66391064	ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1
chr1_3	CDS	66390859	66390950	66390859	ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1
chr1_3	CDS	66390165	66390298	66390165	ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1
chr1_3	CDS	66388582	66389244	66388582	ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1
chr1_3	three_prime_UTR	66388333	66388581	66388333	ID=Msa0134830-mRNA-1:three_prime_utr;Parent=Msa0134830-mRNA-1

Gene Sequence

>Msa0134830

ATGGGGAAGAAACTTGAACTCCTCAAAGACAAGGAAACTGCTAAAGTTGAAGCTGTTCTTGAACTCATCAGAAAACAAACCCCTCTCACTGTCAAACAGGAAAAGTTCTGTAACTATGCTTGTGTGAAACGGTTTCTGAAAGTGAAAGGAGATAATGTGAAAAAAGCTGCTAAACAACTAAGAGCTTGTCTTTCATGGAGAGAAAGCATTGTTACTGATCAATTGATAGCAGATGATTTCTCAGCTGAATTATCTGAAGGGTTGGCTTATGTGGCTGGTCATGATGATGAATCCAGACCTGTTTTGATTTTCCGCATGAAACAAGACTATCAGAAGTTGCATTCTCAGAAACTGTTCTTCACTCGTTTATTGGCTTTCACAATGGAAGTGGCCATTTCAAGCATGCCAAAAAATGTTGAACAATTTGTCATGCTTTTCGATGCAAGCTTTTACAGATCAGCATCTGGATTTATGAACTTGTTGTTGGGAGCATTGAAAATTGTGGGTGAGTACTATCCAGGACGGTTAAGCAAAGCATTTGTGATAGACCCTCCATCACTTTTTGCATACTTGTGGAAGGGTGTTCGTCCATTCGTTGAGCTATCAACATGTACAACAATAGTATCATCCCTAGATTTCGAACCATCAATGGACTACAACGACTTCTCAACCTACCCAAGAGCCTCATCCCTCAGATTCGACCCATCAACCCTAAAATCAACGGCCAAGATTGGTTCATGCTCATCCTCACGCTTCTCCTTCACAGTCTCACACCAACTCGACTCACTCAAACCATGGTACCTTAGCCTAGGAGGAGACAACACATCATCGTCCAAAGTGGGACCCACTAGCCCCTCCCCAGCAGCATCATCCCTTACACCACTCAACGCTCGCTCACTCTCCTTCGCTTCACCAATAGCACGCAACCCTTTGGGCCCACCAGCCAGCAGGAAAGGCTTGTTCCCTTCAACACCACTGCCGCAGAGAGTGACTGCTCCCCACCGGAGTACGACGGCGTCGTTTCTTCAATCTCCGGCGACGTTTTTCCGGCGGGAAAGGGATAATGTGAAGGTGGAAAGAGGTAGAGAATCATTTTTGGCGTATGTGAAATTCTATAGAAGGGCGTATGATGAAATGGTTTATAGGTCAAAGATGAGGCCCCCACTTGGTGGATTAGTCTCTATTGTTTCACCTCATATTAGACGCCGTCACACTCACCTTTCCGTTTCTCAGCGTTTCTAA

Protein sequence

>Msa0134830

MGKKLELLKDKETAKVEAVLELIRKQTPLTVKQEKFCNYACVKRFLKVKGDNVKKAAKQLRACLSWRESIVTDQLIADDFSAELSEGLAYVAGHDDESRPVLIFRMKQDYQKLHSQKLFFTRLLAFTMEVAISSMPKNVEQFVMLFDASFYRSASGFMNLLLGALKIVGEYYPGRLSKAFVIDPPSLFAYLWKGVRPFVELSTCTTIVSSLDFEPSMDYNDFSTYPRASSLRFDPSTLKSTAKIGSCSSSRFSFTVSHQLDSLKPWYLSLGGDNTSSSKVGPTSPSPAASSLTPLNARSLSFASPIARNPLGPPASRKGLFPSTPLPQRVTAPHRSTTASFLQSPATFFRRERDNVKVERGRESFLAYVKFYRRAYDEMVYRSKMRPPLGGLVSIVSPHIRRRHTHLSVSQRF*