Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134830 | XP_003592402.1 | 95.169 | 414 | 10 | 3 | 1 | 413 | 1 | 405 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134830 | sp|Q55CU8|PITC_DICDI | 28.571 | 210 | 145 | 4 | 2 | 207 | 35 | 243 | 2.29e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134830 | G7ID63 | 95.169 | 414 | 10 | 3 | 1 | 413 | 1 | 405 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063190 | Msa0134830 | 0.807339 | 5.304626e-50 | -8.615850e-47 |
| Msa0084990 | Msa0134830 | 0.834129 | 3.583569e-56 | -8.615850e-47 |
| Msa0086250 | Msa0134830 | 0.835301 | 1.816994e-56 | -8.615850e-47 |
| Msa0134830 | Msa0134930 | 0.895106 | 1.312594e-75 | -8.615850e-47 |
| Msa0134830 | Msa0173380 | 0.834890 | 2.307134e-56 | -8.615850e-47 |
| Msa0134830 | Msa0177830 | 0.836673 | 8.151070e-57 | -8.615850e-47 |
| Msa0134830 | Msa0177970 | 0.843512 | 1.338581e-58 | -8.615850e-47 |
| Msa0134830 | Msa0191570 | 0.844657 | 6.602404e-59 | -8.615850e-47 |
| Msa0134830 | Msa0192830 | 0.807577 | 4.723527e-50 | -8.615850e-47 |
| Msa0134830 | Msa0221180 | 0.800968 | 1.123543e-48 | -8.615850e-47 |
| Msa0134830 | Msa0233570 | 0.846103 | 2.679812e-59 | -8.615850e-47 |
| Msa0134830 | Msa0262750 | 0.805435 | 1.336574e-49 | -8.615850e-47 |
| Msa0134830 | Msa0300470 | 0.816910 | 4.333370e-52 | -8.615850e-47 |
| Msa0134830 | Msa0312250 | 0.856540 | 3.002129e-62 | -8.615850e-47 |
| Msa0134830 | Msa0318620 | 0.807961 | 3.913188e-50 | -8.615850e-47 |
| Msa0134830 | Msa0336460 | 0.801197 | 1.008885e-48 | -8.615850e-47 |
| Msa0134830 | Msa0337970 | 0.806374 | 8.484151e-50 | -8.615850e-47 |
| Msa0134830 | Msa0384870 | 0.813993 | 1.931983e-51 | -8.615850e-47 |
| Msa0134830 | Msa0394500 | 0.804362 | 2.240437e-49 | -8.615850e-47 |
| Msa0134830 | Msa0420430 | 0.820021 | 8.547827e-53 | -8.615850e-47 |
| Msa0134830 | Msa0442090 | 0.808952 | 2.405589e-50 | -8.615850e-47 |
| Msa0134830 | Msa0460900 | 0.806418 | 8.306920e-50 | -8.615850e-47 |
| Msa0134830 | Msa0466520 | 0.800643 | 1.308936e-48 | -8.615850e-47 |
| Msa0134830 | Msa0500920 | 0.801025 | 1.093975e-48 | -8.615850e-47 |
| Msa0134830 | Msa0513080 | 0.812064 | 5.115785e-51 | -8.615850e-47 |
| Msa0134830 | Msa0521320 | 0.804078 | 2.566762e-49 | -8.615850e-47 |
| Msa0134830 | Msa0557850 | 0.872471 | 3.099812e-67 | -8.615850e-47 |
| Msa0134830 | Msa0562350 | 0.819021 | 1.445050e-52 | -8.615850e-47 |
| Msa0134830 | Msa0564980 | 0.804464 | 2.133404e-49 | -8.615850e-47 |
| Msa0134830 | Msa0575710 | 0.811564 | 6.571645e-51 | -8.615850e-47 |
| Msa0134830 | Msa0607330 | 0.804744 | 1.865260e-49 | -8.615850e-47 |
| Msa0134830 | Msa0612520 | 0.866827 | 2.144504e-65 | -8.615850e-47 |
| Msa0134830 | Msa0647440 | 0.804832 | 1.787246e-49 | -8.615850e-47 |
| Msa0134830 | Msa0653160 | 0.857636 | 1.426107e-62 | -8.615850e-47 |
| Msa0134830 | Msa0655700 | 0.813779 | 2.153963e-51 | -8.615850e-47 |
| Msa0134830 | Msa0655710 | 0.812902 | 3.355094e-51 | -8.615850e-47 |
| Msa0134830 | Msa0660090 | 0.802211 | 6.249059e-49 | -8.615850e-47 |
| Msa0134830 | Msa0660260 | 0.800215 | 1.600120e-48 | -8.615850e-47 |
| Msa0134830 | Msa0688620 | 0.827479 | 1.529818e-54 | -8.615850e-47 |
| Msa0134830 | Msa0690320 | 0.814022 | 1.903133e-51 | -8.615850e-47 |
| Msa0134830 | Msa0695560 | 0.811644 | 6.315401e-51 | -8.615850e-47 |
| Msa0134830 | Msa0749190 | 0.830838 | 2.343254e-55 | -8.615850e-47 |
| Msa0134830 | Msa0750520 | 0.826155 | 3.168532e-54 | -8.615850e-47 |
| Msa0134830 | Msa0856220 | 0.817878 | 2.624148e-52 | -8.615850e-47 |
| Msa0134830 | Msa0978980 | 0.810233 | 1.275985e-50 | -8.615850e-47 |
| Msa0134830 | Msa1033420 | 0.822206 | 2.680859e-53 | -8.615850e-47 |
| Msa0134830 | Msa1042300 | 0.805438 | 1.334613e-49 | -8.615850e-47 |
| Msa0134830 | Msa1046120 | 0.859328 | 4.461669e-63 | -8.615850e-47 |
| Msa0134830 | Msa1071410 | 0.825959 | 3.527090e-54 | -8.615850e-47 |
| Msa0134830 | Msa1073060 | 0.819453 | 1.152496e-52 | -8.615850e-47 |
| Msa0134830 | Msa1079640 | 0.815963 | 7.060025e-52 | -8.615850e-47 |
| Msa0134830 | Msa1091050 | 0.852366 | 4.839406e-61 | -8.615850e-47 |
| Msa0134830 | Msa1124470 | 0.809436 | 1.893615e-50 | -8.615850e-47 |
| Msa0134830 | Msa1130780 | 0.830664 | 2.586238e-55 | -8.615850e-47 |
| Msa0134830 | Msa1133970 | 0.847168 | 1.371927e-59 | -8.615850e-47 |
| Msa0134830 | Msa1134040 | 0.849333 | 3.458392e-60 | -8.615850e-47 |
| Msa0134830 | Msa1160780 | 0.836569 | 8.666884e-57 | -8.615850e-47 |
| Msa0134830 | Msa1166190 | 0.803559 | 3.290322e-49 | -8.615850e-47 |
| Msa0134830 | Msa1166290 | 0.819857 | 9.319024e-53 | -8.615850e-47 |
| Msa0134830 | Msa1228630 | 0.809023 | 2.322333e-50 | -8.615850e-47 |
| Msa0134830 | Msa1308850 | 0.803215 | 3.876497e-49 | -8.615850e-47 |
| Msa0134830 | Msa1341750 | 0.828976 | 6.662072e-55 | -8.615850e-47 |
| Msa0134830 | Msa1342810 | 0.839145 | 1.887250e-57 | -8.615850e-47 |
| Msa0134830 | Msa1356450 | 0.804390 | 2.210485e-49 | -8.615850e-47 |
| Msa0134830 | Msa1377140 | 0.808834 | 2.548949e-50 | -8.615850e-47 |
| Msa0134830 | Msa1381800 | 0.823924 | 1.065840e-53 | -8.615850e-47 |
| Msa0134830 | Msa1389310 | 0.823635 | 1.245412e-53 | -8.615850e-47 |
| Msa0134830 | Msa1410160 | 0.806484 | 8.045276e-50 | -8.615850e-47 |
| Msa0134830 | Msa1417930 | 0.833975 | 3.915091e-56 | -8.615850e-47 |
| Msa0134830 | Msa1453030 | 0.809058 | 2.282933e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134830 | MtrunA17_Chr1g0205531 | 95.169 | 414 | 10 | 3 | 1 | 413 | 1 | 405 | 0.0 | 798 |
| Msa0134830 | MtrunA17_Chr3g0131581 | 30.198 | 202 | 127 | 4 | 12 | 208 | 44 | 236 | 7.53e-22 | 94.4 |
| Msa0134830 | MtrunA17_Chr1g0155071 | 29.798 | 198 | 132 | 4 | 9 | 203 | 13 | 206 | 1.52e-20 | 91.3 |
| Msa0134830 | MtrunA17_Chr8g0385691 | 27.778 | 198 | 137 | 3 | 12 | 208 | 24 | 216 | 5.46e-20 | 89.0 |
| Msa0134830 | MtrunA17_Chr8g0385681 | 26.471 | 204 | 144 | 3 | 6 | 208 | 21 | 219 | 2.91e-19 | 86.7 |
| Msa0134830 | MtrunA17_Chr3g0115591 | 28.856 | 201 | 136 | 3 | 8 | 207 | 21 | 215 | 6.96e-19 | 87.0 |
| Msa0134830 | MtrunA17_Chr5g0425421 | 27.586 | 203 | 138 | 4 | 7 | 207 | 17 | 212 | 2.23e-18 | 85.5 |
| Msa0134830 | MtrunA17_Chr7g0254621 | 29.570 | 186 | 127 | 2 | 19 | 203 | 24 | 206 | 1.15e-17 | 83.6 |
| Msa0134830 | MtrunA17_Chr8g0373391 | 27.273 | 198 | 125 | 5 | 19 | 207 | 23 | 210 | 7.72e-15 | 74.7 |
| Msa0134830 | MtrunA17_Chr4g0058811 | 25.478 | 157 | 115 | 2 | 45 | 200 | 77 | 232 | 2.77e-11 | 63.5 |
| Msa0134830 | MtrunA17_Chr4g0058791 | 24.405 | 168 | 125 | 2 | 42 | 208 | 72 | 238 | 4.50e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134830 | AT1G05370.1 | 63.488 | 430 | 127 | 11 | 1 | 413 | 1 | 417 | 1.18e-178 | 504 |
| Msa0134830 | AT3G22410.1 | 60.952 | 420 | 137 | 13 | 1 | 413 | 1 | 400 | 2.35e-164 | 468 |
| Msa0134830 | AT1G75170.2 | 33.005 | 203 | 128 | 5 | 9 | 207 | 13 | 211 | 2.23e-22 | 97.1 |
| Msa0134830 | AT1G75170.1 | 33.005 | 203 | 128 | 5 | 9 | 207 | 13 | 211 | 2.23e-22 | 97.1 |
| Msa0134830 | AT4G08690.2 | 31.795 | 195 | 126 | 3 | 10 | 203 | 17 | 205 | 2.54e-22 | 96.7 |
| Msa0134830 | AT4G08690.1 | 31.795 | 195 | 126 | 3 | 10 | 203 | 17 | 205 | 2.54e-22 | 96.7 |
| Msa0134830 | AT4G08690.3 | 31.795 | 195 | 126 | 3 | 10 | 203 | 17 | 205 | 2.54e-22 | 96.7 |
| Msa0134830 | AT1G22180.2 | 31.492 | 181 | 120 | 2 | 28 | 207 | 35 | 212 | 2.88e-22 | 97.1 |
| Msa0134830 | AT1G22180.4 | 31.492 | 181 | 120 | 2 | 28 | 207 | 35 | 212 | 2.88e-22 | 97.1 |
| Msa0134830 | AT1G01630.1 | 25.962 | 208 | 147 | 4 | 3 | 208 | 17 | 219 | 3.00e-17 | 81.3 |
| Msa0134830 | AT4G36640.1 | 29.208 | 202 | 138 | 4 | 8 | 207 | 10 | 208 | 2.89e-16 | 79.3 |
| Msa0134830 | AT4G36640.3 | 29.208 | 202 | 138 | 4 | 8 | 207 | 10 | 208 | 2.89e-16 | 79.3 |
| Msa0134830 | AT1G22180.3 | 28.859 | 149 | 102 | 2 | 60 | 207 | 2 | 147 | 5.51e-13 | 68.9 |
| Msa0134830 | AT1G22180.1 | 28.859 | 149 | 102 | 2 | 60 | 207 | 2 | 147 | 5.51e-13 | 68.9 |
| Msa0134830 | AT5G63060.1 | 28.025 | 157 | 111 | 2 | 45 | 200 | 78 | 233 | 2.61e-12 | 67.0 |
| Msa0134830 | AT5G63060.2 | 28.025 | 157 | 111 | 2 | 45 | 200 | 43 | 198 | 5.01e-12 | 65.9 |
Find 119 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCATTCATATGATATTTA+AGG | 0.120240 | 1_3:-66392124 | Msa0134830:five_prime_UTR |
| CTCTCTCTCTGCTGAGTTAT+TGG | 0.149617 | 1_3:-66392159 | Msa0134830:five_prime_UTR |
| ACACGAGTGTACTTGAAAAT+TGG | 0.259531 | 1_3:+66388377 | None:intergenic |
| AACTAAGAGCTTGTCTTTCA+TGG | 0.260163 | 1_3:-66391760 | Msa0134830:CDS |
| AAATATCATATGAATGAATA+AGG | 0.260705 | 1_3:+66392128 | None:intergenic |
| TGTGTGTATGCTTGGTAATT+TGG | 0.270416 | 1_3:-66388357 | Msa0134830:three_prime_UTR |
| TAGCAGTTTCCTTGTCTTTG+AGG | 0.282102 | 1_3:+66391997 | None:intergenic |
| AAGGTTCTTCACTCGTTTAT+TGG | 0.290731 | 1_3:-66390931 | Msa0134830:CDS |
| CCATTGATGGTTCGAAATCT+AGG | 0.348472 | 1_3:+66389172 | None:intergenic |
| AGGGATGATGCTGCTGGGGA+GGG | 0.352053 | 1_3:+66388949 | None:intergenic |
| CTGCTGGCTGGTGGGCCCAA+AGG | 0.354048 | 1_3:+66388874 | None:intergenic |
| TGCTGCTGGGGAGGGGCTAG+TGG | 0.364455 | 1_3:+66388957 | None:intergenic |
| TGGAGAGAAAGCATTGTTAC+TGG | 0.366079 | 1_3:-66391740 | Msa0134830:intron |
| TGCTGGCTGGTGGGCCCAAA+GGG | 0.371558 | 1_3:+66388875 | None:intergenic |
| AATAATAATAATATATGTAC+TGG | 0.372895 | 1_3:+66388472 | None:intergenic |
| TGATGAATCCAGACCTGTTT+TGG | 0.373995 | 1_3:-66391264 | Msa0134830:intron |
| ACCAATAGCACGCAACCCTT+TGG | 0.377838 | 1_3:-66388890 | Msa0134830:CDS |
| ATAATAAAACTTACCAAAAC+AGG | 0.377861 | 1_3:+66391251 | None:intergenic |
| CGTATGATGAAATGGTTTAT+AGG | 0.382044 | 1_3:-66388678 | Msa0134830:CDS |
| CGTATGTGAAATTCTATAGA+AGG | 0.391586 | 1_3:-66388702 | Msa0134830:CDS |
| CTCTGCGGCAGTGGTGTTGA+AGG | 0.404669 | 1_3:+66388838 | None:intergenic |
| CCAATAGCACGCAACCCTTT+GGG | 0.406343 | 1_3:-66388889 | Msa0134830:CDS |
| AAGTCGTTGTAGTCCATTGA+TGG | 0.407526 | 1_3:+66389159 | None:intergenic |
| CTAGATATCATATCATGAAT+TGG | 0.412718 | 1_3:-66388428 | Msa0134830:three_prime_UTR |
| AACCCCTCTCACTGTCAAAC+AGG | 0.415234 | 1_3:-66391940 | Msa0134830:intron |
| CCCAAAGGGTTGCGTGCTAT+TGG | 0.416383 | 1_3:+66388889 | None:intergenic |
| TGGAATAATAGTTCTCTTGT+TGG | 0.416521 | 1_3:-66392083 | Msa0134830:five_prime_UTR |
| ATCTGAAGGGTTGGCTTATG+TGG | 0.418745 | 1_3:-66391297 | Msa0134830:CDS |
| AACAAGCCTTTCCTGCTGGC+TGG | 0.423706 | 1_3:+66388862 | None:intergenic |
| TGGATTTATGAACTTGTTGT+TGG | 0.425772 | 1_3:-66390257 | Msa0134830:CDS |
| ATCTGAGGGATGAGGCTCTT+GGG | 0.427015 | 1_3:+66389127 | None:intergenic |
| AAGGGATGATGCTGCTGGGG+AGG | 0.428497 | 1_3:+66388948 | None:intergenic |
| GCTGCTGGGGAGGGGCTAGT+GGG | 0.439448 | 1_3:+66388958 | None:intergenic |
| AAGCCTTTCCTGCTGGCTGG+TGG | 0.441969 | 1_3:+66388865 | None:intergenic |
| AGCGAGCGTTGAGTGGTGTA+AGG | 0.447735 | 1_3:+66388929 | None:intergenic |
| TAGAAGGGCGTATGATGAAA+TGG | 0.454431 | 1_3:-66388686 | Msa0134830:CDS |
| CCTAGATTTCGAACCATCAA+TGG | 0.454461 | 1_3:-66389172 | Msa0134830:CDS |
| CTAAAATCAACGGCCAAGAT+TGG | 0.455841 | 1_3:-66389090 | Msa0134830:CDS |
| GGGGCTAGTGGGTCCCACTT+TGG | 0.457789 | 1_3:+66388969 | None:intergenic |
| GGCCCACCAGCCAGCAGGAA+AGG | 0.461394 | 1_3:-66388868 | Msa0134830:CDS |
| AGCCTTTCCTGCTGGCTGGT+GGG | 0.470937 | 1_3:+66388866 | None:intergenic |
| GCAGTCACTCTCTGCGGCAG+TGG | 0.476170 | 1_3:+66388829 | None:intergenic |
| GGATGAGCATGAACCAATCT+TGG | 0.477387 | 1_3:+66389077 | None:intergenic |
| GAAGGGTTGGCTTATGTGGC+TGG | 0.480517 | 1_3:-66391293 | Msa0134830:CDS |
| AAAACTTACCAAAACAGGTC+TGG | 0.482409 | 1_3:+66391256 | None:intergenic |
| GGATTTATGAACTTGTTGTT+GGG | 0.483181 | 1_3:-66390256 | Msa0134830:CDS |
| AATCTGAGGGATGAGGCTCT+TGG | 0.483672 | 1_3:+66389126 | None:intergenic |
| ATTGTGGGTGAGTACTATCC+AGG | 0.486719 | 1_3:-66390223 | Msa0134830:CDS |
| CTTTGGGCCCACCAGCCAGC+AGG | 0.492718 | 1_3:-66388873 | Msa0134830:CDS |
| AATGCTTTGCTTAACCGTCC+TGG | 0.493604 | 1_3:+66390205 | None:intergenic |
| TTGGGAGCATTGAAAATTGT+GGG | 0.494434 | 1_3:-66390238 | Msa0134830:CDS |
| AGGGAACAAGCCTTTCCTGC+TGG | 0.497899 | 1_3:+66388858 | None:intergenic |
| GGCGTCGTTTCTTCAATCTC+CGG | 0.501288 | 1_3:-66388788 | Msa0134830:CDS |
| GGTGTAAGGGATGATGCTGC+TGG | 0.502520 | 1_3:+66388943 | None:intergenic |
| GTTGGGAGCATTGAAAATTG+TGG | 0.506561 | 1_3:-66390239 | Msa0134830:CDS |
| TTCTCAGCTGAATTATCTGA+AGG | 0.510130 | 1_3:-66391311 | Msa0134830:CDS |
| ATTGGCTTTCACAATGGAAG+TGG | 0.511205 | 1_3:-66390913 | Msa0134830:CDS |
| TGATTAGAAACGCTGAGAAA+CGG | 0.511572 | 1_3:+66388579 | None:intergenic |
| GTAACTATGCTTGTGTGAAA+CGG | 0.512111 | 1_3:-66391826 | Msa0134830:CDS |
| AGCTGAATTATCTGAAGGGT+TGG | 0.514458 | 1_3:-66391306 | Msa0134830:CDS |
| GGGATGATGCTGCTGGGGAG+GGG | 0.519871 | 1_3:+66388950 | None:intergenic |
| TGTTGTCTCCTCCTAGGCTA+AGG | 0.531664 | 1_3:+66389001 | None:intergenic |
| CATTGATGGTTCGAAATCTA+GGG | 0.533344 | 1_3:+66389173 | None:intergenic |
| GTGTAAGGGATGATGCTGCT+GGG | 0.543625 | 1_3:+66388944 | None:intergenic |
| TACACTCGTGTGTGTATGCT+TGG | 0.545944 | 1_3:-66388365 | Msa0134830:three_prime_UTR |
| GATAATGTGAAGGTGGAAAG+AGG | 0.546600 | 1_3:-66388742 | Msa0134830:CDS |
| TGTAAGGGATGATGCTGCTG+GGG | 0.547217 | 1_3:+66388945 | None:intergenic |
| TGTACCTGTTTGACAGTGAG+AGG | 0.549753 | 1_3:+66391936 | None:intergenic |
| GAGGGATGAGGCTCTTGGGT+AGG | 0.552830 | 1_3:+66389131 | None:intergenic |
| GGGTTGATGGGTCGAATCTG+AGG | 0.558790 | 1_3:+66389112 | None:intergenic |
| ATGATGTGTTGTCTCCTCCT+AGG | 0.560395 | 1_3:+66388995 | None:intergenic |
| GGTTGCGTGAAACAGAAGCT+TGG | 0.560446 | 1_3:-66392103 | Msa0134830:five_prime_UTR |
| GAAACGACGCCGTCGTACTC+CGG | 0.567325 | 1_3:+66388800 | None:intergenic |
| TACCTGTTTGACAGTGAGAG+GGG | 0.572972 | 1_3:+66391938 | None:intergenic |
| CCATGGTACCTTAGCCTAGG+AGG | 0.577141 | 1_3:-66389009 | Msa0134830:CDS |
| CGACGCCGTCGTACTCCGGT+GGG | 0.577454 | 1_3:+66388804 | None:intergenic |
| AACTCGACTCACTCAAACCA+TGG | 0.579927 | 1_3:-66389026 | Msa0134830:CDS |
| AGAGAGTGACTGCTCCCCAC+CGG | 0.580394 | 1_3:-66388819 | Msa0134830:CDS |
| AAACGGTTTCTGAAAGTGAA+AGG | 0.582881 | 1_3:-66391809 | Msa0134830:CDS |
| TAGAGACTAATCCACCAAGT+GGG | 0.588815 | 1_3:+66388641 | None:intergenic |
| TCGTTTATTGGCTTTCACAA+TGG | 0.591579 | 1_3:-66390919 | Msa0134830:CDS |
| TCTGATAGTCTTGTTTCATG+CGG | 0.591599 | 1_3:+66391083 | None:intergenic |
| TGATGAAGTTGAGTTGATTG+CGG | 0.591807 | 1_3:+66388532 | None:intergenic |
| TCTGCGGCAGTGGTGTTGAA+GGG | 0.591949 | 1_3:+66388839 | None:intergenic |
| GAGAGTGAGCGAGCGTTGAG+TGG | 0.592294 | 1_3:+66388922 | None:intergenic |
| TCACATTATCCCTTTCCCGC+CGG | 0.592391 | 1_3:+66388755 | None:intergenic |
| GTACCTGTTTGACAGTGAGA+GGG | 0.593416 | 1_3:+66391937 | None:intergenic |
| CCTCCTAGGCTAAGGTACCA+TGG | 0.593699 | 1_3:+66389009 | None:intergenic |
| ACGACGCCGTCGTACTCCGG+TGG | 0.596751 | 1_3:+66388803 | None:intergenic |
| GCGTGCTATTGGTGAAGCGA+AGG | 0.605710 | 1_3:+66388900 | None:intergenic |
| AGAGACTAATCCACCAAGTG+GGG | 0.606305 | 1_3:+66388642 | None:intergenic |
| CCCATCAACCCTAAAATCAA+CGG | 0.608077 | 1_3:-66389100 | Msa0134830:CDS |
| AAACCATGGTACCTTAGCCT+AGG | 0.608161 | 1_3:-66389012 | Msa0134830:CDS |
| TCTCAGCTGAATTATCTGAA+GGG | 0.608948 | 1_3:-66391310 | Msa0134830:CDS |
| CAACACATCATCGTCCAAAG+TGG | 0.611191 | 1_3:-66388983 | Msa0134830:CDS |
| GGTTGATGGGTCGAATCTGA+GGG | 0.612135 | 1_3:+66389113 | None:intergenic |
| ATGGTTTGAGTGAGTCGAGT+TGG | 0.618278 | 1_3:+66389028 | None:intergenic |
| CATGTTGATAGCTCAACGAA+TGG | 0.624312 | 1_3:+66389213 | None:intergenic |
| GTATGTGAAATTCTATAGAA+GGG | 0.624349 | 1_3:-66388701 | Msa0134830:CDS |
| GGAAAGGGATAATGTGAAGG+TGG | 0.628854 | 1_3:-66388749 | Msa0134830:CDS |
| AACACATCATCGTCCAAAGT+GGG | 0.630292 | 1_3:-66388982 | Msa0134830:CDS |
| TGGGTCGAATCTGAGGGATG+AGG | 0.634099 | 1_3:+66389119 | None:intergenic |
| AAACGGAAAGGTGAGTGTGA+CGG | 0.648731 | 1_3:+66388596 | None:intergenic |
| GCGGGAAAGGGATAATGTGA+AGG | 0.650440 | 1_3:-66388752 | Msa0134830:CDS |
| ATAATAATAATATATGTACT+GGG | 0.651044 | 1_3:+66388473 | None:intergenic |
| ACTTGAACTCCTCAAAGACA+AGG | 0.655023 | 1_3:-66392006 | Msa0134830:CDS |
| GTGTGACGGCGTCTAATATG+AGG | 0.655901 | 1_3:+66388610 | None:intergenic |
| AGAAACGCTGAGAAACGGAA+AGG | 0.658877 | 1_3:+66388584 | None:intergenic |
| TGCTCCCCACCGGAGTACGA+CGG | 0.659586 | 1_3:-66388809 | Msa0134830:CDS |
| GCGAGCGTTGAGTGGTGTAA+GGG | 0.663009 | 1_3:+66388930 | None:intergenic |
| GACGCCGTCGTACTCCGGTG+GGG | 0.665660 | 1_3:+66388805 | None:intergenic |
| GAGACTAATCCACCAAGTGG+GGG | 0.677099 | 1_3:+66388643 | None:intergenic |
| AAGTTGAGTTGATTGCGGTG+TGG | 0.683057 | 1_3:+66388537 | None:intergenic |
| TGGTTTATAGGTCAAAGATG+AGG | 0.693083 | 1_3:-66388666 | Msa0134830:CDS |
| ATAGAGACTAATCCACCAAG+TGG | 0.711384 | 1_3:+66388640 | None:intergenic |
| TGGGTGAGTACTATCCAGGA+CGG | 0.714746 | 1_3:-66390219 | Msa0134830:CDS |
| GACTGTGAAGGAGAAGCGTG+AGG | 0.721537 | 1_3:+66389056 | None:intergenic |
| TGGGGAGCAGTCACTCTCTG+CGG | 0.735020 | 1_3:+66388823 | None:intergenic |
| GAGTTGGTGTGAGACTGTGA+AGG | 0.737605 | 1_3:+66389044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAATCATTTTTAATGA+TGG | - | chr1_3:66389147-66389166 | Msa0134830:CDS | 10.0% |
| !!! | AAATAATCATTTTTAATGAT+GGG | - | chr1_3:66389148-66389167 | Msa0134830:CDS | 10.0% |
| !!! | AACATAAATTTTCAAAATAA+AGG | + | chr1_3:66389303-66389322 | None:intergenic | 10.0% |
| !! | TAAATGTAGTAATTAATAAA+GGG | + | chr1_3:66390197-66390216 | None:intergenic | 10.0% |
| !! | TTAAATGTAGTAATTAATAA+AGG | + | chr1_3:66390198-66390217 | None:intergenic | 10.0% |
| !! | ATAATAATAATATATGTACT+GGG | + | chr1_3:66392058-66392077 | None:intergenic | 10.0% |
| !! | AATAATAATAATATATGTAC+TGG | + | chr1_3:66392059-66392078 | None:intergenic | 10.0% |
| !! | AAATATCATATGAATGAATA+AGG | + | chr1_3:66388403-66388422 | None:intergenic | 15.0% |
| !! | ATTCATTCATATGATATTTA+AGG | - | chr1_3:66388404-66388423 | Msa0134830:three_prime_UTR | 15.0% |
| !!! | TAAAAAACTTTTCTAGTTAA+AGG | + | chr1_3:66388873-66388892 | None:intergenic | 15.0% |
| !! | ATAATTGAATTGATAGATAT+AGG | + | chr1_3:66391023-66391042 | None:intergenic | 15.0% |
| !! | TAAATCTATTTATGAAAGAA+AGG | - | chr1_3:66391254-66391273 | Msa0134830:intron | 15.0% |
| !!! | ACTTTTAAAGCTTAATTCAA+AGG | + | chr1_3:66388983-66389002 | None:intergenic | 20.0% |
| !! | AAAAGATATTATTCTTTGTG+GGG | + | chr1_3:66389080-66389099 | None:intergenic | 20.0% |
| !! | GAAAAGATATTATTCTTTGT+GGG | + | chr1_3:66389081-66389100 | None:intergenic | 20.0% |
| !! | AGAAAAGATATTATTCTTTG+TGG | + | chr1_3:66389082-66389101 | None:intergenic | 20.0% |
| !! | ATAATAAAACTTACCAAAAC+AGG | + | chr1_3:66389280-66389299 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTTGTAATAATGA+AGG | - | chr1_3:66389578-66389597 | Msa0134830:intron | 20.0% |
| !!! | ACAAATTGTTCAACATTTTT+TGG | + | chr1_3:66389655-66389674 | None:intergenic | 20.0% |
| !! | ATGACAAATAAGTTAAAATG+AGG | - | chr1_3:66389766-66389785 | Msa0134830:intron | 20.0% |
| !! | AGCTACAATAACATAATTTA+AGG | + | chr1_3:66390080-66390099 | None:intergenic | 20.0% |
| !! | GTAAAAAAAGTTAGAATCAT+GGG | + | chr1_3:66390125-66390144 | None:intergenic | 20.0% |
| !! | CATATTTAATTAGAATCACA+AGG | + | chr1_3:66390699-66390718 | None:intergenic | 20.0% |
| !!! | AATTCTCAACAATTTTCTTT+CGG | - | chr1_3:66390756-66390775 | Msa0134830:intron | 20.0% |
| !!! | TATAAATGTAACTCTGAAAT+AGG | + | chr1_3:66390932-66390951 | None:intergenic | 20.0% |
| !! | TATTTCAGAGTTACATTTAT+AGG | - | chr1_3:66390931-66390950 | Msa0134830:CDS | 20.0% |
| !! | ATTTCAGAGTTACATTTATA+GGG | - | chr1_3:66390932-66390951 | Msa0134830:intron | 20.0% |
| !!! | AACATTTTAATCTCAAGAAA+GGG | - | chr1_3:66390985-66391004 | Msa0134830:intron | 20.0% |
| !! | AATTAGTAGTTTAGTACATT+AGG | + | chr1_3:66391188-66391207 | None:intergenic | 20.0% |
| ! | ACAACTACTACTATAGTATA+GGG | + | chr1_3:66389024-66389043 | None:intergenic | 25.0% |
| ! | TACAACTACTACTATAGTAT+AGG | + | chr1_3:66389025-66389044 | None:intergenic | 25.0% |
| ! | AATATTCTTGTCTTTGTGTT+TGG | + | chr1_3:66389498-66389517 | None:intergenic | 25.0% |
| ! | AGAACCTTCATTATTACAAA+AGG | + | chr1_3:66389585-66389604 | None:intergenic | 25.0% |
| !!! | TGGAAATTTTGGTAATGAAT+AGG | + | chr1_3:66389715-66389734 | None:intergenic | 25.0% |
| !! | AAATGGCATTATGGAAATTT+TGG | + | chr1_3:66389726-66389745 | None:intergenic | 25.0% |
| ! | AAAGAAACAGAAAAGATTGA+GGG | - | chr1_3:66389818-66389837 | Msa0134830:intron | 25.0% |
| ! | CTGTAGTATACATTAATTGA+AGG | + | chr1_3:66389970-66389989 | None:intergenic | 25.0% |
| !!! | ATGTTAGAAAGGGTATTATT+GGG | - | chr1_3:66389993-66390012 | Msa0134830:intron | 25.0% |
| ! | AAATTATGTTATTGTAGCTG+TGG | - | chr1_3:66390081-66390100 | Msa0134830:intron | 25.0% |
| ! | GGTAAAAAAAGTTAGAATCA+TGG | + | chr1_3:66390126-66390145 | None:intergenic | 25.0% |
| ! | ATGGTACTAATTTACAAAAG+AGG | + | chr1_3:66390172-66390191 | None:intergenic | 25.0% |
| ! | TAGTAATTAATAAAGGGTGA+TGG | + | chr1_3:66390191-66390210 | None:intergenic | 25.0% |
| ! | GTAATCAGTTGAATTAAACA+TGG | + | chr1_3:66390225-66390244 | None:intergenic | 25.0% |
| ! | AATTCAACTGATTACATTAC+AGG | - | chr1_3:66390230-66390249 | Msa0134830:CDS | 25.0% |
| ! | GAAAGAAAATTGTTGAGAAT+TGG | + | chr1_3:66390757-66390776 | None:intergenic | 25.0% |
| ! | TAGCTAGGTAATTATATAGT+TGG | + | chr1_3:66390864-66390883 | None:intergenic | 25.0% |
| !!! | CAACATTTTAATCTCAAGAA+AGG | - | chr1_3:66390984-66391003 | Msa0134830:intron | 25.0% |
| ! | TATTTGTAGTTTATGACTGA+TGG | - | chr1_3:66391221-66391240 | Msa0134830:intron | 25.0% |
| ! | GTATGTGAAATTCTATAGAA+GGG | - | chr1_3:66391827-66391846 | Msa0134830:CDS | 25.0% |
| ! | CTAGATATCATATCATGAAT+TGG | - | chr1_3:66392100-66392119 | Msa0134830:five_prime_UTR | 25.0% |
| TGGAATAATAGTTCTCTTGT+TGG | - | chr1_3:66388445-66388464 | Msa0134830:three_prime_UTR | 30.0% | |
| !!! | TCAGCATTTTTTTCTCGAAA+TGG | - | chr1_3:66388492-66388511 | Msa0134830:three_prime_UTR | 30.0% |
| !!! | CAGCATTTTTTTCTCGAAAT+GGG | - | chr1_3:66388493-66388512 | Msa0134830:three_prime_UTR | 30.0% |
| !!! | AGCATTTTTTTCTCGAAATG+GGG | - | chr1_3:66388494-66388513 | Msa0134830:three_prime_UTR | 30.0% |
| !!! | TCTTGTTTTTTTGCGTGTAT+AGG | - | chr1_3:66388670-66388689 | Msa0134830:CDS | 30.0% |
| GAAAACACAAAAAGAGAAGT+CGG | + | chr1_3:66388914-66388933 | None:intergenic | 30.0% | |
| ! | ATTTTTCTGAGTTCAAAGTG+TGG | - | chr1_3:66389384-66389403 | Msa0134830:intron | 30.0% |
| ! | TTTTTCTGAGTTCAAAGTGT+GGG | - | chr1_3:66389385-66389404 | Msa0134830:intron | 30.0% |
| GGGATTTGAATTTGGTTAAT+TGG | - | chr1_3:66389405-66389424 | Msa0134830:intron | 30.0% | |
| !!! | ATTTTTTGGCATGCTTGAAA+TGG | + | chr1_3:66389641-66389660 | None:intergenic | 30.0% |
| ! | TCTTGTTTCAAATGGCATTA+TGG | + | chr1_3:66389735-66389754 | None:intergenic | 30.0% |
| GAAAGAAACAGAAAAGATTG+AGG | - | chr1_3:66389817-66389836 | Msa0134830:intron | 30.0% | |
| AGAAACAATAAATGAGAGAG+TGG | - | chr1_3:66389844-66389863 | Msa0134830:intron | 30.0% | |
| TTTGGAAAACTCTGTTTGTT+AGG | - | chr1_3:66389875-66389894 | Msa0134830:intron | 30.0% | |
| TACTACAGTACATGTTAGAA+AGG | - | chr1_3:66389982-66390001 | Msa0134830:intron | 30.0% | |
| ACTACAGTACATGTTAGAAA+GGG | - | chr1_3:66389983-66390002 | Msa0134830:intron | 30.0% | |
| !! | CATGTTAGAAAGGGTATTAT+TGG | - | chr1_3:66389992-66390011 | Msa0134830:intron | 30.0% |
| GAAATAGACCAATTGTGATA+GGG | + | chr1_3:66390043-66390062 | None:intergenic | 30.0% | |
| TGAAATAGACCAATTGTGAT+AGG | + | chr1_3:66390044-66390063 | None:intergenic | 30.0% | |
| ! | AATAAAGAGTAGTGGGAAAA+AGG | + | chr1_3:66390147-66390166 | None:intergenic | 30.0% |
| AGAGGTAAATAAAGAGTAGT+GGG | + | chr1_3:66390154-66390173 | None:intergenic | 30.0% | |
| AAGAGGTAAATAAAGAGTAG+TGG | + | chr1_3:66390155-66390174 | None:intergenic | 30.0% | |
| !! | TGGATTTATGAACTTGTTGT+TGG | - | chr1_3:66390271-66390290 | Msa0134830:CDS | 30.0% |
| !! | GGATTTATGAACTTGTTGTT+GGG | - | chr1_3:66390272-66390291 | Msa0134830:CDS | 30.0% |
| ! | TGTTGTTATTGGAGTTTAAC+TGG | + | chr1_3:66390437-66390456 | None:intergenic | 30.0% |
| ! | ACAGCAAATAGTGTTGTTAT+TGG | + | chr1_3:66390448-66390467 | None:intergenic | 30.0% |
| !!! | CTCGATCTCTGTTTTTTTTA+AGG | - | chr1_3:66390604-66390623 | Msa0134830:intron | 30.0% |
| !!! | GATCTCTGTTTTTTTTAAGG+TGG | - | chr1_3:66390607-66390626 | Msa0134830:intron | 30.0% |
| CATTACATCCATACATTACT+AGG | - | chr1_3:66390672-66390691 | Msa0134830:intron | 30.0% | |
| !! | TTGACTTGTTGTGTAAGATT+AGG | - | chr1_3:66390799-66390818 | Msa0134830:intron | 30.0% |
| AAGATTAGGTAGAACTAGTT+CGG | - | chr1_3:66390813-66390832 | Msa0134830:intron | 30.0% | |
| AGAGTTACATTTATAGGGTA+TGG | - | chr1_3:66390937-66390956 | Msa0134830:intron | 30.0% | |
| GAGTTACATTTATAGGGTAT+GGG | - | chr1_3:66390938-66390957 | Msa0134830:intron | 30.0% | |
| TTGAGATTAAAATGTTGCGA+AGG | + | chr1_3:66390981-66391000 | None:intergenic | 30.0% | |
| TAGTAGTTTAGTACATTAGG+TGG | + | chr1_3:66391185-66391204 | None:intergenic | 30.0% | |
| ! | AAGAGGTAGAGAATCATTTT+TGG | - | chr1_3:66391803-66391822 | Msa0134830:CDS | 30.0% |
| CGTATGTGAAATTCTATAGA+AGG | - | chr1_3:66391826-66391845 | Msa0134830:CDS | 30.0% | |
| CGTATGATGAAATGGTTTAT+AGG | - | chr1_3:66391850-66391869 | Msa0134830:intron | 30.0% | |
| GTAACTATGCTTGTGTGAAA+CGG | - | chr1_3:66388702-66388721 | Msa0134830:CDS | 35.0% | |
| ! | AAACGGTTTCTGAAAGTGAA+AGG | - | chr1_3:66388719-66388738 | Msa0134830:CDS | 35.0% |
| AACTAAGAGCTTGTCTTTCA+TGG | - | chr1_3:66388768-66388787 | Msa0134830:CDS | 35.0% | |
| ACTACTATAGTATAGGGAGT+GGG | + | chr1_3:66389018-66389037 | None:intergenic | 35.0% | |
| TACTACTATAGTATAGGGAG+TGG | + | chr1_3:66389019-66389038 | None:intergenic | 35.0% | |
| ! | TTTCAGAGGTATGAAGAAAG+TGG | + | chr1_3:66389057-66389076 | None:intergenic | 35.0% |
| TTCTCAGCTGAATTATCTGA+AGG | - | chr1_3:66389217-66389236 | Msa0134830:CDS | 35.0% | |
| TCTCAGCTGAATTATCTGAA+GGG | - | chr1_3:66389218-66389237 | Msa0134830:CDS | 35.0% | |
| AAAACTTACCAAAACAGGTC+TGG | + | chr1_3:66389275-66389294 | None:intergenic | 35.0% | |
| CAAAGTGTGGGATTTGAATT+TGG | - | chr1_3:66389397-66389416 | Msa0134830:intron | 35.0% | |
| !! | TCTGATAGTCTTGTTTCATG+CGG | + | chr1_3:66389448-66389467 | None:intergenic | 35.0% |
| AAGGTTCTTCACTCGTTTAT+TGG | - | chr1_3:66389597-66389616 | Msa0134830:intron | 35.0% | |
| !! | TCGTTTATTGGCTTTCACAA+TGG | - | chr1_3:66389609-66389628 | Msa0134830:intron | 35.0% |
| ! | CCTAACTCTCTTGTTTCAAA+TGG | + | chr1_3:66389743-66389762 | None:intergenic | 35.0% |
| ! | CCATTTGAAACAAGAGAGTT+AGG | - | chr1_3:66389740-66389759 | Msa0134830:intron | 35.0% |
| GATACATTCCCTATCACAAT+TGG | - | chr1_3:66390032-66390051 | Msa0134830:intron | 35.0% | |
| !! | TTGGGAGCATTGAAAATTGT+GGG | - | chr1_3:66390290-66390309 | Msa0134830:intron | 35.0% |
| ! | AGTATGCAAAAAGTGATGGA+GGG | + | chr1_3:66390358-66390377 | None:intergenic | 35.0% |
| AAGTATGCAAAAAGTGATGG+AGG | + | chr1_3:66390359-66390378 | None:intergenic | 35.0% | |
| CACAAGTATGCAAAAAGTGA+TGG | + | chr1_3:66390362-66390381 | None:intergenic | 35.0% | |
| !!! | CATCACTTTTTGCATACTTG+TGG | - | chr1_3:66390360-66390379 | Msa0134830:intron | 35.0% |
| ! | ACTTTTTGCATACTTGTGGA+AGG | - | chr1_3:66390364-66390383 | Msa0134830:intron | 35.0% |
| GGCTAAACAGTACTAGATAT+AGG | + | chr1_3:66390410-66390429 | None:intergenic | 35.0% | |
| !! | TGTCTTGTTTGTAGTTGTGT+TGG | - | chr1_3:66390465-66390484 | Msa0134830:intron | 35.0% |
| !! | GTCTTGTTTGTAGTTGTGTT+GGG | - | chr1_3:66390466-66390485 | Msa0134830:intron | 35.0% |
| AAAAAAACAGAGATCGAGAG+TGG | + | chr1_3:66390602-66390621 | None:intergenic | 35.0% | |
| TAGTATATCCTTGGATGGAT+TGG | + | chr1_3:66390639-66390658 | None:intergenic | 35.0% | |
| AAGAGCAAGTAGTATATCCT+TGG | + | chr1_3:66390648-66390667 | None:intergenic | 35.0% | |
| TAGGTGGATCATAATCTAGA+AGG | + | chr1_3:66391169-66391188 | None:intergenic | 35.0% | |
| ! | CATTGATGGTTCGAAATCTA+GGG | + | chr1_3:66391358-66391377 | None:intergenic | 35.0% |
| !!! | AATCTTGGCCGTTGATTTTA+GGG | + | chr1_3:66391439-66391458 | None:intergenic | 35.0% |
| TGGTTTATAGGTCAAAGATG+AGG | - | chr1_3:66391862-66391881 | Msa0134830:intron | 35.0% | |
| TGATTAGAAACGCTGAGAAA+CGG | + | chr1_3:66391952-66391971 | None:intergenic | 35.0% | |
| !! | TGATGAAGTTGAGTTGATTG+CGG | + | chr1_3:66391999-66392018 | None:intergenic | 35.0% |
| ACACGAGTGTACTTGAAAAT+TGG | + | chr1_3:66392154-66392173 | None:intergenic | 35.0% | |
| ! | TGTGTGTATGCTTGGTAATT+TGG | - | chr1_3:66392171-66392190 | Msa0134830:five_prime_UTR | 35.0% |
| ACTTGAACTCCTCAAAGACA+AGG | - | chr1_3:66388522-66388541 | Msa0134830:three_prime_UTR | 40.0% | |
| TAGCAGTTTCCTTGTCTTTG+AGG | + | chr1_3:66388534-66388553 | None:intergenic | 40.0% | |
| !! | TGGAGAGAAAGCATTGTTAC+TGG | - | chr1_3:66388788-66388807 | Msa0134830:CDS | 40.0% |
| CTACTATAGTATAGGGAGTG+GGG | + | chr1_3:66389017-66389036 | None:intergenic | 40.0% | |
| TATTCTTTGTGGGGTTTCAG+AGG | + | chr1_3:66389071-66389090 | None:intergenic | 40.0% | |
| AGCTGAATTATCTGAAGGGT+TGG | - | chr1_3:66389222-66389241 | Msa0134830:CDS | 40.0% | |
| ! | TGATGAATCCAGACCTGTTT+TGG | - | chr1_3:66389264-66389283 | Msa0134830:intron | 40.0% |
| !! | ATTGGCTTTCACAATGGAAG+TGG | - | chr1_3:66389615-66389634 | Msa0134830:intron | 40.0% |
| ! | TGGTAATGAATAGGTGTGTG+TGG | + | chr1_3:66389706-66389725 | None:intergenic | 40.0% |
| AATAAATGAGAGAGTGGAGC+AGG | - | chr1_3:66389850-66389869 | Msa0134830:intron | 40.0% | |
| ! | CTCTGTTTGTTAGGATTCAC+CGG | - | chr1_3:66389884-66389903 | Msa0134830:intron | 40.0% |
| !! | GTTGGGAGCATTGAAAATTG+TGG | - | chr1_3:66390289-66390308 | Msa0134830:intron | 40.0% |
| TATTGGAGTTTAACTGGCAG+TGG | + | chr1_3:66390431-66390450 | None:intergenic | 40.0% | |
| ACAACAACTACGCATGTAAC+TGG | - | chr1_3:66390572-66390591 | Msa0134830:intron | 40.0% | |
| !! | ATCCTTGGATGGATTGGATT+GGG | + | chr1_3:66390633-66390652 | None:intergenic | 40.0% |
| !! | TATCCTTGGATGGATTGGAT+TGG | + | chr1_3:66390634-66390653 | None:intergenic | 40.0% |
| GCAAGTAGTATATCCTTGGA+TGG | + | chr1_3:66390644-66390663 | None:intergenic | 40.0% | |
| CACAAGGACCTAGTAATGTA+TGG | + | chr1_3:66390683-66390702 | None:intergenic | 40.0% | |
| AATAGTGTGTTGTCATGTGC+AGG | - | chr1_3:66391284-66391303 | Msa0134830:CDS | 40.0% | |
| ATAGTGTGTTGTCATGTGCA+GGG | - | chr1_3:66391285-66391304 | Msa0134830:CDS | 40.0% | |
| !! | CATGTTGATAGCTCAACGAA+TGG | + | chr1_3:66391318-66391337 | None:intergenic | 40.0% |
| ! | CCATTGATGGTTCGAAATCT+AGG | + | chr1_3:66391359-66391378 | None:intergenic | 40.0% |
| CCTAGATTTCGAACCATCAA+TGG | - | chr1_3:66391356-66391375 | Msa0134830:intron | 40.0% | |
| AAGTCGTTGTAGTCCATTGA+TGG | + | chr1_3:66391372-66391391 | None:intergenic | 40.0% | |
| !!! | CCGTTGATTTTAGGGTTGAT+GGG | + | chr1_3:66391431-66391450 | None:intergenic | 40.0% |
| CCCATCAACCCTAAAATCAA+CGG | - | chr1_3:66391428-66391447 | Msa0134830:intron | 40.0% | |
| !!! | CAATCTTGGCCGTTGATTTT+AGG | + | chr1_3:66391440-66391459 | None:intergenic | 40.0% |
| CTAAAATCAACGGCCAAGAT+TGG | - | chr1_3:66391438-66391457 | Msa0134830:intron | 40.0% | |
| AACACATCATCGTCCAAAGT+GGG | - | chr1_3:66391546-66391565 | Msa0134830:intron | 40.0% | |
| GATAATGTGAAGGTGGAAAG+AGG | - | chr1_3:66391786-66391805 | Msa0134830:CDS | 40.0% | |
| ! | TAGAAGGGCGTATGATGAAA+TGG | - | chr1_3:66391842-66391861 | Msa0134830:intron | 40.0% |
| TAGAGACTAATCCACCAAGT+GGG | + | chr1_3:66391890-66391909 | None:intergenic | 40.0% | |
| ATAGAGACTAATCCACCAAG+TGG | + | chr1_3:66391891-66391910 | None:intergenic | 40.0% | |
| CTCTCTCTCTGCTGAGTTAT+TGG | - | chr1_3:66388369-66388388 | Msa0134830:three_prime_UTR | 45.0% | |
| TACCTGTTTGACAGTGAGAG+GGG | + | chr1_3:66388593-66388612 | None:intergenic | 45.0% | |
| GTACCTGTTTGACAGTGAGA+GGG | + | chr1_3:66388594-66388613 | None:intergenic | 45.0% | |
| TGTACCTGTTTGACAGTGAG+AGG | + | chr1_3:66388595-66388614 | None:intergenic | 45.0% | |
| !! | ATCTGAAGGGTTGGCTTATG+TGG | - | chr1_3:66389231-66389250 | Msa0134830:intron | 45.0% |
| ATGAATAGGTGTGTGTGGAG+TGG | + | chr1_3:66389701-66389720 | None:intergenic | 45.0% | |
| TTGAGTCTGTGACACAACAG+GGG | + | chr1_3:66389947-66389966 | None:intergenic | 45.0% | |
| GTTGAGTCTGTGACACAACA+GGG | + | chr1_3:66389948-66389967 | None:intergenic | 45.0% | |
| ! | GGCTTTTACAGATCAGCATC+TGG | - | chr1_3:66390251-66390270 | Msa0134830:CDS | 45.0% |
| ATTGTGGGTGAGTACTATCC+AGG | - | chr1_3:66390305-66390324 | Msa0134830:intron | 45.0% | |
| AATGCTTTGCTTAACCGTCC+TGG | + | chr1_3:66390326-66390345 | None:intergenic | 45.0% | |
| ACAACTACGCATGTAACTGG+AGG | - | chr1_3:66390575-66390594 | Msa0134830:intron | 45.0% | |
| !!! | GCCGTTGATTTTAGGGTTGA+TGG | + | chr1_3:66391432-66391451 | None:intergenic | 45.0% |
| GGATGAGCATGAACCAATCT+TGG | + | chr1_3:66391454-66391473 | None:intergenic | 45.0% | |
| ATGGTTTGAGTGAGTCGAGT+TGG | + | chr1_3:66391503-66391522 | None:intergenic | 45.0% | |
| AACTCGACTCACTCAAACCA+TGG | - | chr1_3:66391502-66391521 | Msa0134830:intron | 45.0% | |
| AAACCATGGTACCTTAGCCT+AGG | - | chr1_3:66391516-66391535 | Msa0134830:intron | 45.0% | |
| ATGATGTGTTGTCTCCTCCT+AGG | + | chr1_3:66391536-66391555 | None:intergenic | 45.0% | |
| CAACACATCATCGTCCAAAG+TGG | - | chr1_3:66391545-66391564 | Msa0134830:intron | 45.0% | |
| GGAAAGGGATAATGTGAAGG+TGG | - | chr1_3:66391779-66391798 | Msa0134830:CDS | 45.0% | |
| AGAGACTAATCCACCAAGTG+GGG | + | chr1_3:66391889-66391908 | None:intergenic | 45.0% | |
| AAACGGAAAGGTGAGTGTGA+CGG | + | chr1_3:66391935-66391954 | None:intergenic | 45.0% | |
| AGAAACGCTGAGAAACGGAA+AGG | + | chr1_3:66391947-66391966 | None:intergenic | 45.0% | |
| !! | AAGTTGAGTTGATTGCGGTG+TGG | + | chr1_3:66391994-66392013 | None:intergenic | 45.0% |
| TACACTCGTGTGTGTATGCT+TGG | - | chr1_3:66392163-66392182 | Msa0134830:five_prime_UTR | 45.0% | |
| GGTTGCGTGAAACAGAAGCT+TGG | - | chr1_3:66388425-66388444 | Msa0134830:three_prime_UTR | 50.0% | |
| AACCCCTCTCACTGTCAAAC+AGG | - | chr1_3:66388588-66388607 | Msa0134830:CDS | 50.0% | |
| ! | AGTCGGCGTGGTTTTCACAA+CGG | + | chr1_3:66388897-66388916 | None:intergenic | 50.0% |
| CACAAAAAGAGAAGTCGGCG+TGG | + | chr1_3:66388909-66388928 | None:intergenic | 50.0% | |
| ! | GTTTGTTAGGATTCACCGGC+AGG | - | chr1_3:66389888-66389907 | Msa0134830:intron | 50.0% |
| GGTTGAGTCTGTGACACAAC+AGG | + | chr1_3:66389949-66389968 | None:intergenic | 50.0% | |
| TGGGTGAGTACTATCCAGGA+CGG | - | chr1_3:66390309-66390328 | Msa0134830:intron | 50.0% | |
| AGCACGTGAGTCACATAGCT+AGG | + | chr1_3:66390879-66390898 | None:intergenic | 50.0% | |
| ATCTGAGGGATGAGGCTCTT+GGG | + | chr1_3:66391404-66391423 | None:intergenic | 50.0% | |
| AATCTGAGGGATGAGGCTCT+TGG | + | chr1_3:66391405-66391424 | None:intergenic | 50.0% | |
| !! | GGTTGATGGGTCGAATCTGA+GGG | + | chr1_3:66391418-66391437 | None:intergenic | 50.0% |
| !! | GAGTTGGTGTGAGACTGTGA+AGG | + | chr1_3:66391487-66391506 | None:intergenic | 50.0% |
| TGTTGTCTCCTCCTAGGCTA+AGG | + | chr1_3:66391530-66391549 | None:intergenic | 50.0% | |
| TGTAAGGGATGATGCTGCTG+GGG | + | chr1_3:66391586-66391605 | None:intergenic | 50.0% | |
| GTGTAAGGGATGATGCTGCT+GGG | + | chr1_3:66391587-66391606 | None:intergenic | 50.0% | |
| ACCAATAGCACGCAACCCTT+TGG | - | chr1_3:66391638-66391657 | Msa0134830:intron | 50.0% | |
| CCAATAGCACGCAACCCTTT+GGG | - | chr1_3:66391639-66391658 | Msa0134830:intron | 50.0% | |
| GGCGTCGTTTCTTCAATCTC+CGG | - | chr1_3:66391740-66391759 | Msa0134830:intron | 50.0% | |
| ! | AATCTCCGGCGACGTTTTTC+CGG | - | chr1_3:66391754-66391773 | Msa0134830:CDS | 50.0% |
| TCACATTATCCCTTTCCCGC+CGG | + | chr1_3:66391776-66391795 | None:intergenic | 50.0% | |
| GCGGGAAAGGGATAATGTGA+AGG | - | chr1_3:66391776-66391795 | Msa0134830:CDS | 50.0% | |
| GAGACTAATCCACCAAGTGG+GGG | + | chr1_3:66391888-66391907 | None:intergenic | 50.0% | |
| GTGTGACGGCGTCTAATATG+AGG | + | chr1_3:66391921-66391940 | None:intergenic | 50.0% | |
| ! | GTCGGCGTGGTTTTCACAAC+GGG | + | chr1_3:66388896-66388915 | None:intergenic | 55.0% |
| !! | GAAGGGTTGGCTTATGTGGC+TGG | - | chr1_3:66389235-66389254 | Msa0134830:intron | 55.0% |
| GAGAGAGTGGAGCAGGCATT+TGG | - | chr1_3:66389857-66389876 | Msa0134830:intron | 55.0% | |
| CACATTCTGTGTGCTCCCTC+AGG | + | chr1_3:66389915-66389934 | None:intergenic | 55.0% | |
| ! | GGGAGCACACAGAATGTGTC+CGG | - | chr1_3:66389917-66389936 | Msa0134830:intron | 55.0% |
| GGCCCAATCCAATCCATCCA+AGG | - | chr1_3:66390628-66390647 | Msa0134830:intron | 55.0% | |
| TGGGTCGAATCTGAGGGATG+AGG | + | chr1_3:66391412-66391431 | None:intergenic | 55.0% | |
| !! | GGGTTGATGGGTCGAATCTG+AGG | + | chr1_3:66391419-66391438 | None:intergenic | 55.0% |
| ! | GACTGTGAAGGAGAAGCGTG+AGG | + | chr1_3:66391475-66391494 | None:intergenic | 55.0% |
| ! | CCTCCTAGGCTAAGGTACCA+TGG | + | chr1_3:66391522-66391541 | None:intergenic | 55.0% |
| CCATGGTACCTTAGCCTAGG+AGG | - | chr1_3:66391519-66391538 | Msa0134830:intron | 55.0% | |
| GGTGTAAGGGATGATGCTGC+TGG | + | chr1_3:66391588-66391607 | None:intergenic | 55.0% | |
| !! | GCGAGCGTTGAGTGGTGTAA+GGG | + | chr1_3:66391601-66391620 | None:intergenic | 55.0% |
| !! | AGCGAGCGTTGAGTGGTGTA+AGG | + | chr1_3:66391602-66391621 | None:intergenic | 55.0% |
| ! | GCGTGCTATTGGTGAAGCGA+AGG | + | chr1_3:66391631-66391650 | None:intergenic | 55.0% |
| CCCAAAGGGTTGCGTGCTAT+TGG | + | chr1_3:66391642-66391661 | None:intergenic | 55.0% | |
| AACAAGCCTTTCCTGCTGGC+TGG | + | chr1_3:66391669-66391688 | None:intergenic | 55.0% | |
| AGGGAACAAGCCTTTCCTGC+TGG | + | chr1_3:66391673-66391692 | None:intergenic | 55.0% | |
| ! | TCTGCGGCAGTGGTGTTGAA+GGG | + | chr1_3:66391692-66391711 | None:intergenic | 55.0% |
| ! | GACGTTTTTCCGGCGGGAAA+GGG | - | chr1_3:66391764-66391783 | Msa0134830:CDS | 55.0% |
| TCAAAGATGAGGCCCCCACT+TGG | - | chr1_3:66391873-66391892 | Msa0134830:intron | 55.0% | |
| GATTCACCGGCAGGACCTGA+GGG | - | chr1_3:66389897-66389916 | Msa0134830:intron | 60.0% | |
| !! | GTGACACAACAGGGGCACTC+CGG | + | chr1_3:66389939-66389958 | None:intergenic | 60.0% |
| GAGGGATGAGGCTCTTGGGT+AGG | + | chr1_3:66391400-66391419 | None:intergenic | 60.0% | |
| AGGGATGATGCTGCTGGGGA+GGG | + | chr1_3:66391582-66391601 | None:intergenic | 60.0% | |
| AAGGGATGATGCTGCTGGGG+AGG | + | chr1_3:66391583-66391602 | None:intergenic | 60.0% | |
| !! | GAGAGTGAGCGAGCGTTGAG+TGG | + | chr1_3:66391609-66391628 | None:intergenic | 60.0% |
| ! | AGCCTTTCCTGCTGGCTGGT+GGG | + | chr1_3:66391665-66391684 | None:intergenic | 60.0% |
| ! | AAGCCTTTCCTGCTGGCTGG+TGG | + | chr1_3:66391666-66391685 | None:intergenic | 60.0% |
| ! | CTCTGCGGCAGTGGTGTTGA+AGG | + | chr1_3:66391693-66391712 | None:intergenic | 60.0% |
| TGGGGAGCAGTCACTCTCTG+CGG | + | chr1_3:66391708-66391727 | None:intergenic | 60.0% | |
| AGAGAGTGACTGCTCCCCAC+CGG | - | chr1_3:66391709-66391728 | Msa0134830:intron | 60.0% | |
| GAAACGACGCCGTCGTACTC+CGG | + | chr1_3:66391731-66391750 | None:intergenic | 60.0% | |
| ! | CGACGTTTTTCCGGCGGGAA+AGG | - | chr1_3:66391763-66391782 | Msa0134830:CDS | 60.0% |
| AAGATGAGGCCCCCACTTGG+TGG | - | chr1_3:66391876-66391895 | Msa0134830:intron | 60.0% | |
| GGATTCACCGGCAGGACCTG+AGG | - | chr1_3:66389896-66389915 | Msa0134830:intron | 65.0% | |
| TGTGCTCCCTCAGGTCCTGC+CGG | + | chr1_3:66389906-66389925 | None:intergenic | 65.0% | |
| ! | GGGGCTAGTGGGTCCCACTT+TGG | + | chr1_3:66391562-66391581 | None:intergenic | 65.0% |
| GGGATGATGCTGCTGGGGAG+GGG | + | chr1_3:66391581-66391600 | None:intergenic | 65.0% | |
| ! | TGCTGGCTGGTGGGCCCAAA+GGG | + | chr1_3:66391656-66391675 | None:intergenic | 65.0% |
| GCAGTCACTCTCTGCGGCAG+TGG | + | chr1_3:66391702-66391721 | None:intergenic | 65.0% | |
| TGCTCCCCACCGGAGTACGA+CGG | - | chr1_3:66391719-66391738 | Msa0134830:intron | 65.0% | |
| ! | CTCCGGCGACGTTTTTCCGG+CGG | - | chr1_3:66391757-66391776 | Msa0134830:CDS | 65.0% |
| ! | TCCGGCGACGTTTTTCCGGC+GGG | - | chr1_3:66391758-66391777 | Msa0134830:CDS | 65.0% |
| TCCCGCCGGAAAAACGTCGC+CGG | + | chr1_3:66391762-66391781 | None:intergenic | 65.0% | |
| ! | GCTGCTGGGGAGGGGCTAGT+GGG | + | chr1_3:66391573-66391592 | None:intergenic | 70.0% |
| TGCTGCTGGGGAGGGGCTAG+TGG | + | chr1_3:66391574-66391593 | None:intergenic | 70.0% | |
| ! | CTGCTGGCTGGTGGGCCCAA+AGG | + | chr1_3:66391657-66391676 | None:intergenic | 70.0% |
| CTTTGGGCCCACCAGCCAGC+AGG | - | chr1_3:66391655-66391674 | Msa0134830:intron | 70.0% | |
| GGCCCACCAGCCAGCAGGAA+AGG | - | chr1_3:66391660-66391679 | Msa0134830:intron | 70.0% | |
| GACGCCGTCGTACTCCGGTG+GGG | + | chr1_3:66391726-66391745 | None:intergenic | 70.0% | |
| CGACGCCGTCGTACTCCGGT+GGG | + | chr1_3:66391727-66391746 | None:intergenic | 70.0% | |
| ACGACGCCGTCGTACTCCGG+TGG | + | chr1_3:66391728-66391747 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66388333 | 66392217 | 66388333 | ID=Msa0134830;Name=Msa0134830 |
| chr1_3 | mRNA | 66388333 | 66392217 | 66388333 | ID=Msa0134830-mRNA-1;Parent=Msa0134830;Name=Msa0134830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=178|1|1|1|1|1|7|249|413 |
| chr1_3 | exon | 66388333 | 66389244 | 66388333 | ID=Msa0134830-mRNA-1:exon:22682;Parent=Msa0134830-mRNA-1 |
| chr1_3 | exon | 66390165 | 66390298 | 66390165 | ID=Msa0134830-mRNA-1:exon:22681;Parent=Msa0134830-mRNA-1 |
| chr1_3 | exon | 66390859 | 66390950 | 66390859 | ID=Msa0134830-mRNA-1:exon:22680;Parent=Msa0134830-mRNA-1 |
| chr1_3 | exon | 66391064 | 66391110 | 66391064 | ID=Msa0134830-mRNA-1:exon:22679;Parent=Msa0134830-mRNA-1 |
| chr1_3 | exon | 66391265 | 66391353 | 66391265 | ID=Msa0134830-mRNA-1:exon:22678;Parent=Msa0134830-mRNA-1 |
| chr1_3 | exon | 66391741 | 66391858 | 66391741 | ID=Msa0134830-mRNA-1:exon:22677;Parent=Msa0134830-mRNA-1 |
| chr1_3 | exon | 66391941 | 66392217 | 66391941 | ID=Msa0134830-mRNA-1:exon:22676;Parent=Msa0134830-mRNA-1 |
| chr1_3 | five_prime_UTR | 66392040 | 66392217 | 66392040 | ID=Msa0134830-mRNA-1:five_prime_utr;Parent=Msa0134830-mRNA-1 |
| chr1_3 | CDS | 66391941 | 66392039 | 66391941 | ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1 |
| chr1_3 | CDS | 66391741 | 66391858 | 66391741 | ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1 |
| chr1_3 | CDS | 66391265 | 66391353 | 66391265 | ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1 |
| chr1_3 | CDS | 66391064 | 66391110 | 66391064 | ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1 |
| chr1_3 | CDS | 66390859 | 66390950 | 66390859 | ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1 |
| chr1_3 | CDS | 66390165 | 66390298 | 66390165 | ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1 |
| chr1_3 | CDS | 66388582 | 66389244 | 66388582 | ID=Msa0134830-mRNA-1:cds;Parent=Msa0134830-mRNA-1 |
| chr1_3 | three_prime_UTR | 66388333 | 66388581 | 66388333 | ID=Msa0134830-mRNA-1:three_prime_utr;Parent=Msa0134830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
