Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233920 | XP_003593529.1 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233920 | sp|P24805|TSJT1_TOBAC | 41.611 | 149 | 85 | 2 | 1 | 148 | 1 | 148 | 1.50e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233920 | G7IP18 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011920 | Msa0233920 | -0.821888 | 3.178154e-53 | -8.615850e-47 |
| Msa0037180 | Msa0233920 | 0.833656 | 4.705073e-56 | -8.615850e-47 |
| Msa0044010 | Msa0233920 | 0.817025 | 4.084414e-52 | -8.615850e-47 |
| Msa0046950 | Msa0233920 | 0.899083 | 2.814556e-77 | -8.615850e-47 |
| Msa0052780 | Msa0233920 | 0.800275 | 1.555873e-48 | -8.615850e-47 |
| Msa0053640 | Msa0233920 | 0.897470 | 1.363323e-76 | -8.615850e-47 |
| Msa0076640 | Msa0233920 | 0.828118 | 1.073802e-54 | -8.615850e-47 |
| Msa0092220 | Msa0233920 | 0.831497 | 1.614115e-55 | -8.615850e-47 |
| Msa0097570 | Msa0233920 | 0.803832 | 2.887410e-49 | -8.615850e-47 |
| Msa0099260 | Msa0233920 | 0.872510 | 3.009501e-67 | -8.615850e-47 |
| Msa0127910 | Msa0233920 | -0.806375 | 8.481847e-50 | -8.615850e-47 |
| Msa0145430 | Msa0233920 | 0.822227 | 2.651177e-53 | -8.615850e-47 |
| Msa0148040 | Msa0233920 | 0.890627 | 8.302371e-74 | -8.615850e-47 |
| Msa0173950 | Msa0233920 | -0.802021 | 6.836070e-49 | -8.615850e-47 |
| Msa0174060 | Msa0233920 | -0.806137 | 9.519922e-50 | -8.615850e-47 |
| Msa0177320 | Msa0233920 | 0.822871 | 1.878210e-53 | -8.615850e-47 |
| Msa0186400 | Msa0233920 | -0.812340 | 4.453907e-51 | -8.615850e-47 |
| Msa0233920 | Msa0294200 | 0.828924 | 6.860275e-55 | -8.615850e-47 |
| Msa0233920 | Msa0307380 | 0.811203 | 7.873369e-51 | -8.615850e-47 |
| Msa0233920 | Msa0312640 | 0.952734 | 1.278640e-110 | -8.615850e-47 |
| Msa0233920 | Msa0333760 | 0.800945 | 1.135596e-48 | -8.615850e-47 |
| Msa0233920 | Msa0362440 | -0.805201 | 1.496264e-49 | -8.615850e-47 |
| Msa0233920 | Msa0386890 | 0.805661 | 1.198543e-49 | -8.615850e-47 |
| Msa0233920 | Msa0390590 | -0.807458 | 5.005465e-50 | -8.615850e-47 |
| Msa0233920 | Msa0390790 | 0.803179 | 3.944129e-49 | -8.615850e-47 |
| Msa0233920 | Msa0403750 | 0.854052 | 1.590674e-61 | -8.615850e-47 |
| Msa0233920 | Msa0403790 | 0.837017 | 6.660524e-57 | -8.615850e-47 |
| Msa0233920 | Msa0403860 | 0.855512 | 6.003498e-62 | -8.615850e-47 |
| Msa0233920 | Msa0436930 | -0.808757 | 2.648082e-50 | -8.615850e-47 |
| Msa0233920 | Msa0460760 | 0.822781 | 1.970956e-53 | -8.615850e-47 |
| Msa0233920 | Msa0464850 | 0.833128 | 6.370941e-56 | -8.615850e-47 |
| Msa0233920 | Msa0481310 | 0.802176 | 6.353080e-49 | -8.615850e-47 |
| Msa0233920 | Msa0484400 | 0.857529 | 1.534112e-62 | -8.615850e-47 |
| Msa0233920 | Msa0502900 | -0.817475 | 3.235628e-52 | -8.615850e-47 |
| Msa0233920 | Msa0510520 | 0.801405 | 9.144948e-49 | -8.615850e-47 |
| Msa0233920 | Msa0523420 | -0.821797 | 3.335515e-53 | -8.615850e-47 |
| Msa0233920 | Msa0526490 | -0.828983 | 6.635727e-55 | -8.615850e-47 |
| Msa0233920 | Msa0526500 | -0.871108 | 8.781222e-67 | -8.615850e-47 |
| Msa0233920 | Msa0526520 | -0.803264 | 3.787606e-49 | -8.615850e-47 |
| Msa0233920 | Msa0548160 | -0.830543 | 2.768714e-55 | -8.615850e-47 |
| Msa0233920 | Msa0563230 | -0.802099 | 6.587968e-49 | -8.615850e-47 |
| Msa0233920 | Msa0563440 | 0.856098 | 4.046614e-62 | -8.615850e-47 |
| Msa0233920 | Msa0577730 | 0.819483 | 1.134100e-52 | -8.615850e-47 |
| Msa0233920 | Msa0602320 | -0.812498 | 4.112711e-51 | -8.615850e-47 |
| Msa0233920 | Msa0617470 | -0.809959 | 1.461863e-50 | -8.615850e-47 |
| Msa0233920 | Msa0626920 | 0.812402 | 4.316435e-51 | -8.615850e-47 |
| Msa0233920 | Msa0639110 | 0.804222 | 2.395446e-49 | -8.615850e-47 |
| Msa0233920 | Msa0651870 | 0.825005 | 5.934404e-54 | -8.615850e-47 |
| Msa0233920 | Msa0651890 | 0.822624 | 2.143898e-53 | -8.615850e-47 |
| Msa0233920 | Msa0683200 | -0.833687 | 4.620626e-56 | -8.615850e-47 |
| Msa0233920 | Msa0689300 | 0.821855 | 3.234162e-53 | -8.615850e-47 |
| Msa0233920 | Msa0700250 | -0.802605 | 5.181771e-49 | -8.615850e-47 |
| Msa0233920 | Msa0706080 | 0.801641 | 8.182906e-49 | -8.615850e-47 |
| Msa0233920 | Msa0706110 | 0.811422 | 7.058882e-51 | -8.615850e-47 |
| Msa0233920 | Msa0753510 | 0.804231 | 2.385344e-49 | -8.615850e-47 |
| Msa0233920 | Msa0758830 | 0.808010 | 3.821476e-50 | -8.615850e-47 |
| Msa0233920 | Msa0801320 | -0.809605 | 1.741791e-50 | -8.615850e-47 |
| Msa0233920 | Msa0832760 | 0.838215 | 3.282258e-57 | -8.615850e-47 |
| Msa0233920 | Msa0838640 | 0.811143 | 8.112080e-51 | -8.615850e-47 |
| Msa0233920 | Msa0838650 | 0.827734 | 1.328329e-54 | -8.615850e-47 |
| Msa0233920 | Msa0956600 | -0.800666 | 1.295093e-48 | -8.615850e-47 |
| Msa0233920 | Msa0969380 | 0.844800 | 6.038513e-59 | -8.615850e-47 |
| Msa0233920 | Msa0969590 | 0.844592 | 6.870655e-59 | -8.615850e-47 |
| Msa0233920 | Msa0969720 | 0.836579 | 8.613577e-57 | -8.615850e-47 |
| Msa0233920 | Msa0982550 | 0.853509 | 2.280340e-61 | -8.615850e-47 |
| Msa0233920 | Msa1055520 | -0.803307 | 3.710615e-49 | -8.615850e-47 |
| Msa0233920 | Msa1087890 | 0.997385 | 1.312370e-241 | -8.615850e-47 |
| Msa0233920 | Msa1129420 | 0.906293 | 1.732502e-80 | -8.615850e-47 |
| Msa0233920 | Msa1157130 | 0.806540 | 7.828055e-50 | -8.615850e-47 |
| Msa0233920 | Msa1173150 | 0.802087 | 6.625679e-49 | -8.615850e-47 |
| Msa0233920 | Msa1213470 | -0.813490 | 2.493657e-51 | -8.615850e-47 |
| Msa0233920 | Msa1221960 | 0.823220 | 1.557055e-53 | -8.615850e-47 |
| Msa0233920 | Msa1249600 | 0.822813 | 1.937482e-53 | -8.615850e-47 |
| Msa0233920 | Msa1265020 | 0.824511 | 7.756450e-54 | -8.615850e-47 |
| Msa0233920 | Msa1300370 | -0.815405 | 9.401308e-52 | -8.615850e-47 |
| Msa0233920 | Msa1312770 | 0.802084 | 6.634405e-49 | -8.615850e-47 |
| Msa0233920 | Msa1337850 | 0.836433 | 9.386058e-57 | -8.615850e-47 |
| Msa0233920 | Msa1352920 | 0.803113 | 4.070612e-49 | -8.615850e-47 |
| Msa0233920 | Msa1363280 | -0.875950 | 2.056746e-68 | -8.615850e-47 |
| Msa0233920 | Msa1363310 | -0.806376 | 8.476664e-50 | -8.615850e-47 |
| Msa0233920 | Msa1368400 | 0.805591 | 1.239573e-49 | -8.615850e-47 |
| Msa0233920 | Msa1385970 | 0.992382 | 5.939397e-193 | -8.615850e-47 |
| Msa0233920 | Msa1386580 | -0.806267 | 8.939546e-50 | -8.615850e-47 |
| Msa0233920 | Msa1417110 | 0.994801 | 2.534703e-210 | -8.615850e-47 |
| Msa0233920 | Msa1441330 | 0.857480 | 1.586334e-62 | -8.615850e-47 |
| Msa0233920 | Msa1443220 | 0.841087 | 5.878070e-58 | -8.615850e-47 |
| Msa0233920 | Msa1453430 | 0.839580 | 1.455077e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233920 | MtrunA17_Chr2g0281901 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 523 |
| Msa0233920 | MtrunA17_Chr4g0047531 | 74.704 | 253 | 62 | 2 | 1 | 251 | 64 | 316 | 3.06e-136 | 386 |
| Msa0233920 | MtrunA17_Chr2g0317901 | 66.800 | 250 | 82 | 1 | 1 | 249 | 1 | 250 | 3.55e-113 | 325 |
| Msa0233920 | MtrunA17_Chr1g0166351 | 46.000 | 250 | 131 | 3 | 1 | 248 | 1 | 248 | 1.99e-81 | 244 |
| Msa0233920 | MtrunA17_Chr1g0204611 | 42.972 | 249 | 138 | 2 | 1 | 247 | 1 | 247 | 6.08e-78 | 235 |
| Msa0233920 | MtrunA17_Chr2g0287871 | 40.870 | 230 | 132 | 3 | 1 | 229 | 1 | 227 | 2.52e-58 | 185 |
| Msa0233920 | MtrunA17_Chr4g0065571 | 38.261 | 230 | 139 | 2 | 1 | 229 | 1 | 228 | 1.05e-57 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233920 | AT4G27450.1 | 65.060 | 249 | 85 | 2 | 1 | 247 | 1 | 249 | 3.31e-117 | 335 |
| Msa0233920 | AT3G15450.1 | 61.847 | 249 | 92 | 3 | 1 | 247 | 1 | 248 | 3.99e-109 | 315 |
| Msa0233920 | AT5G43830.1 | 45.783 | 249 | 132 | 2 | 1 | 247 | 1 | 248 | 8.93e-81 | 243 |
| Msa0233920 | AT3G15450.2 | 59.896 | 192 | 74 | 3 | 1 | 190 | 1 | 191 | 3.09e-76 | 230 |
| Msa0233920 | AT3G22850.1 | 41.700 | 247 | 142 | 1 | 1 | 247 | 1 | 245 | 9.15e-73 | 223 |
| Msa0233920 | AT3G15450.3 | 59.649 | 171 | 66 | 3 | 1 | 169 | 1 | 170 | 5.06e-64 | 198 |
| Msa0233920 | AT5G19140.1 | 42.174 | 230 | 129 | 3 | 1 | 229 | 1 | 227 | 2.46e-60 | 190 |
| Msa0233920 | AT5G19140.2 | 39.056 | 233 | 126 | 4 | 1 | 232 | 1 | 218 | 6.19e-52 | 169 |
| Msa0233920 | AT5G19140.3 | 45.833 | 168 | 88 | 2 | 66 | 232 | 29 | 194 | 1.57e-50 | 164 |
Find 75 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGTTATTTCTGAAAATT+TGG | 0.186131 | 2_2:+6402923 | Msa0233920:CDS |
| GAGCAACTTATTAGTCCTTT+TGG | 0.192738 | 2_2:+6403438 | Msa0233920:three_prime_UTR |
| AGGCATTGCTTTCATCTTCT+TGG | 0.213186 | 2_2:-6403241 | None:intergenic |
| CAACATATACTGTGCTTTCA+TGG | 0.289891 | 2_2:+6402559 | Msa0233920:CDS |
| CTGAGAATCAACATTGAAAT+TGG | 0.290530 | 2_2:-6403295 | None:intergenic |
| CAAGAAATGGAGATTGAAAA+TGG | 0.291833 | 2_2:-6401706 | None:intergenic |
| TAGGGTTCTGATGGCCATAT+TGG | 0.309694 | 2_2:+6402870 | Msa0233920:intron |
| GCGTCGGAAGTGAAGCTAAC+TGG | 0.331100 | 2_2:+6403340 | Msa0233920:CDS |
| GGGTTTGTTTGAAGGGGAAT+AGG | 0.347155 | 2_2:-6402047 | None:intergenic |
| TGGCCATATTGGACTCTATT+GGG | 0.347166 | 2_2:+6402881 | Msa0233920:CDS |
| AACTGCCTTCAAGTTCTTTG+AGG | 0.369411 | 2_2:-6402709 | None:intergenic |
| GTGAAGCTAACTGGGCTACT+TGG | 0.380329 | 2_2:+6403349 | Msa0233920:CDS |
| AAACTTCGTGTTATTCATAT+CGG | 0.383357 | 2_2:-6403537 | None:intergenic |
| ACACAGGTTGTTTAGTGGTT+TGG | 0.384227 | 2_2:+6402535 | Msa0233920:intron |
| GCTGGACTGTTAAGCTCCTT+TGG | 0.386416 | 2_2:-6401914 | None:intergenic |
| ATGGCCATATTGGACTCTAT+TGG | 0.399544 | 2_2:+6402880 | Msa0233920:CDS |
| GGTCATGTAAAATGCATTAG+AGG | 0.401764 | 2_2:-6402002 | None:intergenic |
| TATAGCATACCTTTGATGAA+TGG | 0.418351 | 2_2:-6402071 | None:intergenic |
| AGAAGACACTGAAATTGATT+AGG | 0.428037 | 2_2:-6403568 | None:intergenic |
| TTGGATGCTCAAAGTTCAAC+AGG | 0.429617 | 2_2:-6403218 | None:intergenic |
| AAAATGAACATACCAAGAAA+TGG | 0.430314 | 2_2:-6401719 | None:intergenic |
| GATCTAGAAGAAAACATGTT+GGG | 0.430615 | 2_2:+6401863 | Msa0233920:exon |
| TGAAGCTAACTGGGCTACTT+GGG | 0.434720 | 2_2:+6403350 | Msa0233920:CDS |
| AGTCAATTAAACAAGCAGTA+TGG | 0.435366 | 2_2:+6402599 | Msa0233920:CDS |
| TTGTCACACAGGTTGTTTAG+TGG | 0.439422 | 2_2:+6402530 | Msa0233920:intron |
| TACCCCAATAGAGTCCAATA+TGG | 0.456193 | 2_2:-6402884 | None:intergenic |
| ATTGCTTTCATCTTCTTGGT+TGG | 0.456752 | 2_2:-6403237 | None:intergenic |
| AGGACTTGATCAGCAGGGTA+TGG | 0.462918 | 2_2:-6402689 | None:intergenic |
| ATATACATACCAGTTGGAAA+TGG | 0.462995 | 2_2:-6402981 | None:intergenic |
| TCATTTGCACCATTTCCAAC+TGG | 0.471531 | 2_2:+6402972 | Msa0233920:CDS |
| ATTTGTGATCTATGATCATA+AGG | 0.473807 | 2_2:+6402736 | Msa0233920:CDS |
| TCTCTAAGAATTTCATGACT+TGG | 0.475577 | 2_2:-6401962 | None:intergenic |
| CAAGTCCTCAAAGAACTTGA+AGG | 0.477517 | 2_2:+6402704 | Msa0233920:CDS |
| TGTTTATCATCGAAGCATAT+CGG | 0.480407 | 2_2:+6402648 | Msa0233920:CDS |
| TGAATGGAGGGTTTGTTTGA+AGG | 0.484201 | 2_2:-6402055 | None:intergenic |
| CATATCGGACACTTCGTGAC+AGG | 0.489174 | 2_2:+6402663 | Msa0233920:CDS |
| CAAGCAGTATGGACTATCAA+AGG | 0.492197 | 2_2:+6402610 | Msa0233920:CDS |
| AAGGACTAATAAGTTGCTCT+TGG | 0.494089 | 2_2:-6403434 | None:intergenic |
| GTGTTTGATTAGGGTTCTGA+TGG | 0.494123 | 2_2:+6402861 | Msa0233920:intron |
| GAATGGAGGGTTTGTTTGAA+GGG | 0.511713 | 2_2:-6402054 | None:intergenic |
| CGTCGGAAGTGAAGCTAACT+GGG | 0.514379 | 2_2:+6403341 | Msa0233920:CDS |
| TGTTTGTTTCATAGTGAGCA+TGG | 0.516434 | 2_2:+6403195 | Msa0233920:CDS |
| AACATATACTGTGCTTTCAT+GGG | 0.516602 | 2_2:+6402560 | Msa0233920:CDS |
| AGCTTCTAATTCACACACTA+AGG | 0.518797 | 2_2:+6401934 | Msa0233920:CDS |
| TCTTTGAGGACTTGATCAGC+AGG | 0.520998 | 2_2:-6402695 | None:intergenic |
| TTAATTGACTAAGATTATGC+AGG | 0.523474 | 2_2:-6402586 | None:intergenic |
| AGCATACCTTTGATGAATGG+AGG | 0.526703 | 2_2:-6402068 | None:intergenic |
| GCATACCTTTGATGAATGGA+GGG | 0.530944 | 2_2:-6402067 | None:intergenic |
| GTGATCTATGATCATAAGGA+TGG | 0.533318 | 2_2:+6402740 | Msa0233920:CDS |
| TATTGCTGCTGATGGTTCTG+TGG | 0.539065 | 2_2:+6402905 | Msa0233920:CDS |
| ACACCCTCACTGTCTATCCT+AGG | 0.539998 | 2_2:-6403261 | None:intergenic |
| TATTGGGGTATTGCTGCTGA+TGG | 0.541579 | 2_2:+6402897 | Msa0233920:CDS |
| AATGGAGGGTTTGTTTGAAG+GGG | 0.545512 | 2_2:-6402053 | None:intergenic |
| TTAGTGTGTGAATTAGAAGC+TGG | 0.552483 | 2_2:-6401932 | None:intergenic |
| TGATCTAGAAGAAAACATGT+TGG | 0.552714 | 2_2:+6401862 | Msa0233920:exon |
| AGAAGATGAAAGCAATGCCT+AGG | 0.563928 | 2_2:+6403244 | Msa0233920:CDS |
| AAGCAGTATGGACTATCAAA+GGG | 0.565561 | 2_2:+6402611 | Msa0233920:CDS |
| GACAGTGAGGGTGTTATGTG+TGG | 0.584626 | 2_2:+6403270 | Msa0233920:CDS |
| ACAAACCCTCCATTCATCAA+AGG | 0.600022 | 2_2:+6402062 | Msa0233920:CDS |
| TTAGCTTCACTTCCGACGCG+TGG | 0.602591 | 2_2:-6403336 | None:intergenic |
| AAAGTTGGTTAATGCACCAA+AGG | 0.604581 | 2_2:+6401898 | Msa0233920:CDS |
| TCAATGTTGATTCTCAGTCG+AGG | 0.609359 | 2_2:+6403301 | Msa0233920:CDS |
| AATCAAATGATGCCACGCGT+CGG | 0.614420 | 2_2:+6403324 | Msa0233920:CDS |
| ATATCGGACACTTCGTGACA+GGG | 0.614896 | 2_2:+6402664 | Msa0233920:CDS |
| CTTTGAGGACTTGATCAGCA+GGG | 0.622312 | 2_2:-6402694 | None:intergenic |
| TAATAAAGCATCATTTCCAA+AGG | 0.630341 | 2_2:-6402023 | None:intergenic |
| GAAGCTAACTGGGCTACTTG+GGG | 0.631415 | 2_2:+6403351 | Msa0233920:CDS |
| GGCCATATTGGACTCTATTG+GGG | 0.633432 | 2_2:+6402882 | Msa0233920:CDS |
| ACAGTGAGGGTGTTATGTGT+GGG | 0.635934 | 2_2:+6403271 | Msa0233920:CDS |
| ATGCCTAGGATAGACAGTGA+GGG | 0.675197 | 2_2:+6403258 | Msa0233920:CDS |
| CAGTATGGACTATCAAAGGG+AGG | 0.687799 | 2_2:+6402614 | Msa0233920:CDS |
| CAGTGAGGGTGTTATGTGTG+GGG | 0.693979 | 2_2:+6403272 | Msa0233920:CDS |
| TATCGGACACTTCGTGACAG+GGG | 0.696194 | 2_2:+6402665 | Msa0233920:CDS |
| AATGCCTAGGATAGACAGTG+AGG | 0.696652 | 2_2:+6403257 | Msa0233920:CDS |
| ACTATCAAAGGGAGGCAACG+AGG | 0.706158 | 2_2:+6402622 | Msa0233920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAAAAAAAACTAAA+TGG | - | chr2_2:6402127-6402146 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAAAAAACTAAA+TGG | - | chr2_2:6402127-6402146 | None:intergenic | 10.0% |
| !!! | ATCATTAGTTTATAATTAGA+AGG | - | chr2_2:6402101-6402120 | None:intergenic | 15.0% |
| !!! | TATATAATTTTAGCTTCTAT+AGG | + | chr2_2:6402255-6402274 | Msa0233920:intron | 15.0% |
| !! | TCAATTAATTAGTCAAAAAA+AGG | - | chr2_2:6402830-6402849 | None:intergenic | 15.0% |
| !!! | ATCATTAGTTTATAATTAGA+AGG | - | chr2_2:6402101-6402120 | None:intergenic | 15.0% |
| !!! | TATATAATTTTAGCTTCTAT+AGG | + | chr2_2:6402255-6402274 | Msa0233920:intron | 15.0% |
| !! | TCAATTAATTAGTCAAAAAA+AGG | - | chr2_2:6402830-6402849 | None:intergenic | 15.0% |
| !! | AATTATGTTTGTGTTTGATT+AGG | + | chr2_2:6402851-6402870 | Msa0233920:intron | 20.0% |
| !! | ATTATGTTTGTGTTTGATTA+GGG | + | chr2_2:6402852-6402871 | Msa0233920:intron | 20.0% |
| !! | AATAACCATTTAGATCAAAT+TGG | + | chr2_2:6403098-6403117 | Msa0233920:intron | 20.0% |
| !! | TTAAATGTTGTTGAAATTTC+AGG | + | chr2_2:6403171-6403190 | Msa0233920:intron | 20.0% |
| !! | TAAATGTTGTTGAAATTTCA+GGG | + | chr2_2:6403172-6403191 | Msa0233920:intron | 20.0% |
| !! | AATTATGTTTGTGTTTGATT+AGG | + | chr2_2:6402851-6402870 | Msa0233920:intron | 20.0% |
| !! | ATTATGTTTGTGTTTGATTA+GGG | + | chr2_2:6402852-6402871 | Msa0233920:intron | 20.0% |
| !! | AATAACCATTTAGATCAAAT+TGG | + | chr2_2:6403098-6403117 | Msa0233920:intron | 20.0% |
| !! | TTAAATGTTGTTGAAATTTC+AGG | + | chr2_2:6403171-6403190 | Msa0233920:intron | 20.0% |
| !! | TAAATGTTGTTGAAATTTCA+GGG | + | chr2_2:6403172-6403191 | Msa0233920:intron | 20.0% |
| ! | AAAATGAACATACCAAGAAA+TGG | - | chr2_2:6401722-6401741 | None:intergenic | 25.0% |
| !! | TAATAAAGCATCATTTCCAA+AGG | - | chr2_2:6402026-6402045 | None:intergenic | 25.0% |
| ! | CTAATCTTAGACATAAACTT+AGG | - | chr2_2:6402310-6402329 | None:intergenic | 25.0% |
| ! | ATAATATTAGGTCAAACTAC+TGG | + | chr2_2:6402375-6402394 | Msa0233920:intron | 25.0% |
| ! | CTAGATCTAGGTAAATAAAA+AGG | + | chr2_2:6402449-6402468 | Msa0233920:intron | 25.0% |
| ! | TTAATTGACTAAGATTATGC+AGG | - | chr2_2:6402589-6402608 | None:intergenic | 25.0% |
| ! | ATTTGTGATCTATGATCATA+AGG | + | chr2_2:6402736-6402755 | Msa0233920:CDS | 25.0% |
| !!! | TAATTTTTTCCAACGTTTAG+AGG | - | chr2_2:6402806-6402825 | None:intergenic | 25.0% |
| !!! | TGTGGTTATTTCTGAAAATT+TGG | + | chr2_2:6402923-6402942 | Msa0233920:CDS | 25.0% |
| ! | TCATTTATGATCTTTCCATA+GGG | - | chr2_2:6403037-6403056 | None:intergenic | 25.0% |
| ! | ATCATTTATGATCTTTCCAT+AGG | - | chr2_2:6403038-6403057 | None:intergenic | 25.0% |
| ! | CAAAAACTAAATATCCCAAA+AGG | - | chr2_2:6403456-6403475 | None:intergenic | 25.0% |
| !!! | GATATTTAGTTTTTGTCGTT+TGG | + | chr2_2:6403461-6403480 | Msa0233920:three_prime_UTR | 25.0% |
| !! | AAACTTCGTGTTATTCATAT+CGG | - | chr2_2:6403540-6403559 | None:intergenic | 25.0% |
| ! | AAAATGAACATACCAAGAAA+TGG | - | chr2_2:6401722-6401741 | None:intergenic | 25.0% |
| !! | TAATAAAGCATCATTTCCAA+AGG | - | chr2_2:6402026-6402045 | None:intergenic | 25.0% |
| ! | CTAATCTTAGACATAAACTT+AGG | - | chr2_2:6402310-6402329 | None:intergenic | 25.0% |
| ! | ATAATATTAGGTCAAACTAC+TGG | + | chr2_2:6402375-6402394 | Msa0233920:intron | 25.0% |
| ! | CTAGATCTAGGTAAATAAAA+AGG | + | chr2_2:6402449-6402468 | Msa0233920:intron | 25.0% |
| ! | TTAATTGACTAAGATTATGC+AGG | - | chr2_2:6402589-6402608 | None:intergenic | 25.0% |
| ! | ATTTGTGATCTATGATCATA+AGG | + | chr2_2:6402736-6402755 | Msa0233920:CDS | 25.0% |
| !!! | TAATTTTTTCCAACGTTTAG+AGG | - | chr2_2:6402806-6402825 | None:intergenic | 25.0% |
| !!! | TGTGGTTATTTCTGAAAATT+TGG | + | chr2_2:6402923-6402942 | Msa0233920:CDS | 25.0% |
| ! | TCATTTATGATCTTTCCATA+GGG | - | chr2_2:6403037-6403056 | None:intergenic | 25.0% |
| ! | ATCATTTATGATCTTTCCAT+AGG | - | chr2_2:6403038-6403057 | None:intergenic | 25.0% |
| ! | CAAAAACTAAATATCCCAAA+AGG | - | chr2_2:6403456-6403475 | None:intergenic | 25.0% |
| !!! | GATATTTAGTTTTTGTCGTT+TGG | + | chr2_2:6403461-6403480 | Msa0233920:three_prime_UTR | 25.0% |
| !! | AAACTTCGTGTTATTCATAT+CGG | - | chr2_2:6403540-6403559 | None:intergenic | 25.0% |
| CAAGAAATGGAGATTGAAAA+TGG | - | chr2_2:6401709-6401728 | None:intergenic | 30.0% | |
| ! | CATTTTCAATCTCCATTTCT+TGG | + | chr2_2:6401707-6401726 | Msa0233920:five_prime_UTR | 30.0% |
| TGATCTAGAAGAAAACATGT+TGG | + | chr2_2:6401862-6401881 | Msa0233920:exon | 30.0% | |
| GATCTAGAAGAAAACATGTT+GGG | + | chr2_2:6401863-6401882 | Msa0233920:exon | 30.0% | |
| ! | AAACATGTTGGGAATTTTCA+AGG | + | chr2_2:6401874-6401893 | Msa0233920:exon | 30.0% |
| ! | TCTCTAAGAATTTCATGACT+TGG | - | chr2_2:6401965-6401984 | None:intergenic | 30.0% |
| ! | AATGCATTTTACATGACCTT+TGG | + | chr2_2:6402007-6402026 | Msa0233920:CDS | 30.0% |
| TATAGCATACCTTTGATGAA+TGG | - | chr2_2:6402074-6402093 | None:intergenic | 30.0% | |
| ! | GCATATAATCTTTTCTCCTA+CGG | - | chr2_2:6402342-6402361 | None:intergenic | 30.0% |
| ! | TATTTACCTAGATCTAGTTC+AGG | - | chr2_2:6402446-6402465 | None:intergenic | 30.0% |
| AACATATACTGTGCTTTCAT+GGG | + | chr2_2:6402560-6402579 | Msa0233920:CDS | 30.0% | |
| AGTCAATTAAACAAGCAGTA+TGG | + | chr2_2:6402599-6402618 | Msa0233920:CDS | 30.0% | |
| TGTTTATCATCGAAGCATAT+CGG | + | chr2_2:6402648-6402667 | Msa0233920:CDS | 30.0% | |
| ATATACATACCAGTTGGAAA+TGG | - | chr2_2:6402984-6403003 | None:intergenic | 30.0% | |
| TTCCAACTGGTATGTATATT+TGG | + | chr2_2:6402985-6403004 | Msa0233920:intron | 30.0% | |
| AACCAAATATACATACCAGT+TGG | - | chr2_2:6402990-6403009 | None:intergenic | 30.0% | |
| !! | ATGAGTTTTTAACTACCCTA+TGG | + | chr2_2:6403019-6403038 | Msa0233920:intron | 30.0% |
| GTATGCCAATTTGATCTAAA+TGG | - | chr2_2:6403106-6403125 | None:intergenic | 30.0% | |
| ATAATGTGCGAAATTGTCTA+TGG | + | chr2_2:6403130-6403149 | Msa0233920:intron | 30.0% | |
| TAATGTGCGAAATTGTCTAT+GGG | + | chr2_2:6403131-6403150 | Msa0233920:intron | 30.0% | |
| CTGAGAATCAACATTGAAAT+TGG | - | chr2_2:6403298-6403317 | None:intergenic | 30.0% | |
| ! | AGCAACTTATTAGTCCTTTT+GGG | + | chr2_2:6403439-6403458 | Msa0233920:three_prime_UTR | 30.0% |
| CAAGAAATGGAGATTGAAAA+TGG | - | chr2_2:6401709-6401728 | None:intergenic | 30.0% | |
| ! | CATTTTCAATCTCCATTTCT+TGG | + | chr2_2:6401707-6401726 | Msa0233920:five_prime_UTR | 30.0% |
| TGATCTAGAAGAAAACATGT+TGG | + | chr2_2:6401862-6401881 | Msa0233920:exon | 30.0% | |
| GATCTAGAAGAAAACATGTT+GGG | + | chr2_2:6401863-6401882 | Msa0233920:exon | 30.0% | |
| ! | AAACATGTTGGGAATTTTCA+AGG | + | chr2_2:6401874-6401893 | Msa0233920:exon | 30.0% |
| ! | TCTCTAAGAATTTCATGACT+TGG | - | chr2_2:6401965-6401984 | None:intergenic | 30.0% |
| ! | AATGCATTTTACATGACCTT+TGG | + | chr2_2:6402007-6402026 | Msa0233920:CDS | 30.0% |
| TATAGCATACCTTTGATGAA+TGG | - | chr2_2:6402074-6402093 | None:intergenic | 30.0% | |
| ! | GCATATAATCTTTTCTCCTA+CGG | - | chr2_2:6402342-6402361 | None:intergenic | 30.0% |
| ! | TATTTACCTAGATCTAGTTC+AGG | - | chr2_2:6402446-6402465 | None:intergenic | 30.0% |
| AACATATACTGTGCTTTCAT+GGG | + | chr2_2:6402560-6402579 | Msa0233920:CDS | 30.0% | |
| AGTCAATTAAACAAGCAGTA+TGG | + | chr2_2:6402599-6402618 | Msa0233920:CDS | 30.0% | |
| TGTTTATCATCGAAGCATAT+CGG | + | chr2_2:6402648-6402667 | Msa0233920:CDS | 30.0% | |
| ATATACATACCAGTTGGAAA+TGG | - | chr2_2:6402984-6403003 | None:intergenic | 30.0% | |
| TTCCAACTGGTATGTATATT+TGG | + | chr2_2:6402985-6403004 | Msa0233920:intron | 30.0% | |
| AACCAAATATACATACCAGT+TGG | - | chr2_2:6402990-6403009 | None:intergenic | 30.0% | |
| !! | ATGAGTTTTTAACTACCCTA+TGG | + | chr2_2:6403019-6403038 | Msa0233920:intron | 30.0% |
| GTATGCCAATTTGATCTAAA+TGG | - | chr2_2:6403106-6403125 | None:intergenic | 30.0% | |
| ATAATGTGCGAAATTGTCTA+TGG | + | chr2_2:6403130-6403149 | Msa0233920:intron | 30.0% | |
| TAATGTGCGAAATTGTCTAT+GGG | + | chr2_2:6403131-6403150 | Msa0233920:intron | 30.0% | |
| CTGAGAATCAACATTGAAAT+TGG | - | chr2_2:6403298-6403317 | None:intergenic | 30.0% | |
| ! | AGCAACTTATTAGTCCTTTT+GGG | + | chr2_2:6403439-6403458 | Msa0233920:three_prime_UTR | 30.0% |
| !! | GGGAATTTTCAAGGAAAAGT+TGG | + | chr2_2:6401883-6401902 | Msa0233920:CDS | 35.0% |
| ! | AAAGTTGGTTAATGCACCAA+AGG | + | chr2_2:6401898-6401917 | Msa0233920:CDS | 35.0% |
| TTAGTGTGTGAATTAGAAGC+TGG | - | chr2_2:6401935-6401954 | None:intergenic | 35.0% | |
| AGCTTCTAATTCACACACTA+AGG | + | chr2_2:6401934-6401953 | Msa0233920:CDS | 35.0% | |
| GGTCATGTAAAATGCATTAG+AGG | - | chr2_2:6402005-6402024 | None:intergenic | 35.0% | |
| TAGGTTTCAGATCTGATTGT+AGG | + | chr2_2:6402274-6402293 | Msa0233920:intron | 35.0% | |
| AAATGACCTGAACTAGATCT+AGG | + | chr2_2:6402437-6402456 | Msa0233920:intron | 35.0% | |
| !! | AAATGTGTCATTTGTCACAC+AGG | + | chr2_2:6402519-6402538 | Msa0233920:intron | 35.0% |
| CAACATATACTGTGCTTTCA+TGG | + | chr2_2:6402559-6402578 | Msa0233920:CDS | 35.0% | |
| ! | AAGCAGTATGGACTATCAAA+GGG | + | chr2_2:6402611-6402630 | Msa0233920:CDS | 35.0% |
| GTGATCTATGATCATAAGGA+TGG | + | chr2_2:6402740-6402759 | Msa0233920:CDS | 35.0% | |
| ! | CTTAATTAGCCTCTAAACGT+TGG | + | chr2_2:6402794-6402813 | Msa0233920:intron | 35.0% |
| TGTTTGTTTCATAGTGAGCA+TGG | + | chr2_2:6403195-6403214 | Msa0233920:CDS | 35.0% | |
| ATTGCTTTCATCTTCTTGGT+TGG | - | chr2_2:6403240-6403259 | None:intergenic | 35.0% | |
| AAGGACTAATAAGTTGCTCT+TGG | - | chr2_2:6403437-6403456 | None:intergenic | 35.0% | |
| ! | GAGCAACTTATTAGTCCTTT+TGG | + | chr2_2:6403438-6403457 | Msa0233920:three_prime_UTR | 35.0% |
| !! | GGGAATTTTCAAGGAAAAGT+TGG | + | chr2_2:6401883-6401902 | Msa0233920:CDS | 35.0% |
| ! | AAAGTTGGTTAATGCACCAA+AGG | + | chr2_2:6401898-6401917 | Msa0233920:CDS | 35.0% |
| TTAGTGTGTGAATTAGAAGC+TGG | - | chr2_2:6401935-6401954 | None:intergenic | 35.0% | |
| AGCTTCTAATTCACACACTA+AGG | + | chr2_2:6401934-6401953 | Msa0233920:CDS | 35.0% | |
| GGTCATGTAAAATGCATTAG+AGG | - | chr2_2:6402005-6402024 | None:intergenic | 35.0% | |
| TAGGTTTCAGATCTGATTGT+AGG | + | chr2_2:6402274-6402293 | Msa0233920:intron | 35.0% | |
| AAATGACCTGAACTAGATCT+AGG | + | chr2_2:6402437-6402456 | Msa0233920:intron | 35.0% | |
| !! | AAATGTGTCATTTGTCACAC+AGG | + | chr2_2:6402519-6402538 | Msa0233920:intron | 35.0% |
| CAACATATACTGTGCTTTCA+TGG | + | chr2_2:6402559-6402578 | Msa0233920:CDS | 35.0% | |
| ! | AAGCAGTATGGACTATCAAA+GGG | + | chr2_2:6402611-6402630 | Msa0233920:CDS | 35.0% |
| GTGATCTATGATCATAAGGA+TGG | + | chr2_2:6402740-6402759 | Msa0233920:CDS | 35.0% | |
| ! | CTTAATTAGCCTCTAAACGT+TGG | + | chr2_2:6402794-6402813 | Msa0233920:intron | 35.0% |
| TGTTTGTTTCATAGTGAGCA+TGG | + | chr2_2:6403195-6403214 | Msa0233920:CDS | 35.0% | |
| ATTGCTTTCATCTTCTTGGT+TGG | - | chr2_2:6403240-6403259 | None:intergenic | 35.0% | |
| AAGGACTAATAAGTTGCTCT+TGG | - | chr2_2:6403437-6403456 | None:intergenic | 35.0% | |
| ! | GAGCAACTTATTAGTCCTTT+TGG | + | chr2_2:6403438-6403457 | Msa0233920:three_prime_UTR | 35.0% |
| ! | AATGGAGGGTTTGTTTGAAG+GGG | - | chr2_2:6402056-6402075 | None:intergenic | 40.0% |
| ! | GAATGGAGGGTTTGTTTGAA+GGG | - | chr2_2:6402057-6402076 | None:intergenic | 40.0% |
| ! | TGAATGGAGGGTTTGTTTGA+AGG | - | chr2_2:6402058-6402077 | None:intergenic | 40.0% |
| ACAAACCCTCCATTCATCAA+AGG | + | chr2_2:6402062-6402081 | Msa0233920:CDS | 40.0% | |
| GCATACCTTTGATGAATGGA+GGG | - | chr2_2:6402070-6402089 | None:intergenic | 40.0% | |
| AGCATACCTTTGATGAATGG+AGG | - | chr2_2:6402071-6402090 | None:intergenic | 40.0% | |
| TTGTCACACAGGTTGTTTAG+TGG | + | chr2_2:6402530-6402549 | Msa0233920:intron | 40.0% | |
| ACACAGGTTGTTTAGTGGTT+TGG | + | chr2_2:6402535-6402554 | Msa0233920:intron | 40.0% | |
| ! | CAAGCAGTATGGACTATCAA+AGG | + | chr2_2:6402610-6402629 | Msa0233920:CDS | 40.0% |
| CAAGTCCTCAAAGAACTTGA+AGG | + | chr2_2:6402704-6402723 | Msa0233920:CDS | 40.0% | |
| ! | AACTGCCTTCAAGTTCTTTG+AGG | - | chr2_2:6402712-6402731 | None:intergenic | 40.0% |
| ! | GTGTTTGATTAGGGTTCTGA+TGG | + | chr2_2:6402861-6402880 | Msa0233920:intron | 40.0% |
| ATGGCCATATTGGACTCTAT+TGG | + | chr2_2:6402880-6402899 | Msa0233920:CDS | 40.0% | |
| TGGCCATATTGGACTCTATT+GGG | + | chr2_2:6402881-6402900 | Msa0233920:CDS | 40.0% | |
| TACCCCAATAGAGTCCAATA+TGG | - | chr2_2:6402887-6402906 | None:intergenic | 40.0% | |
| TCATTTGCACCATTTCCAAC+TGG | + | chr2_2:6402972-6402991 | Msa0233920:CDS | 40.0% | |
| TTGGATGCTCAAAGTTCAAC+AGG | - | chr2_2:6403221-6403240 | None:intergenic | 40.0% | |
| ! | AGGCATTGCTTTCATCTTCT+TGG | - | chr2_2:6403244-6403263 | None:intergenic | 40.0% |
| AGAAGATGAAAGCAATGCCT+AGG | + | chr2_2:6403244-6403263 | Msa0233920:CDS | 40.0% | |
| !! | TCAATGTTGATTCTCAGTCG+AGG | + | chr2_2:6403301-6403320 | Msa0233920:CDS | 40.0% |
| ! | AATGGAGGGTTTGTTTGAAG+GGG | - | chr2_2:6402056-6402075 | None:intergenic | 40.0% |
| ! | GAATGGAGGGTTTGTTTGAA+GGG | - | chr2_2:6402057-6402076 | None:intergenic | 40.0% |
| ! | TGAATGGAGGGTTTGTTTGA+AGG | - | chr2_2:6402058-6402077 | None:intergenic | 40.0% |
| ACAAACCCTCCATTCATCAA+AGG | + | chr2_2:6402062-6402081 | Msa0233920:CDS | 40.0% | |
| GCATACCTTTGATGAATGGA+GGG | - | chr2_2:6402070-6402089 | None:intergenic | 40.0% | |
| AGCATACCTTTGATGAATGG+AGG | - | chr2_2:6402071-6402090 | None:intergenic | 40.0% | |
| TTGTCACACAGGTTGTTTAG+TGG | + | chr2_2:6402530-6402549 | Msa0233920:intron | 40.0% | |
| ACACAGGTTGTTTAGTGGTT+TGG | + | chr2_2:6402535-6402554 | Msa0233920:intron | 40.0% | |
| ! | CAAGCAGTATGGACTATCAA+AGG | + | chr2_2:6402610-6402629 | Msa0233920:CDS | 40.0% |
| CAAGTCCTCAAAGAACTTGA+AGG | + | chr2_2:6402704-6402723 | Msa0233920:CDS | 40.0% | |
| ! | AACTGCCTTCAAGTTCTTTG+AGG | - | chr2_2:6402712-6402731 | None:intergenic | 40.0% |
| ! | GTGTTTGATTAGGGTTCTGA+TGG | + | chr2_2:6402861-6402880 | Msa0233920:intron | 40.0% |
| ATGGCCATATTGGACTCTAT+TGG | + | chr2_2:6402880-6402899 | Msa0233920:CDS | 40.0% | |
| TGGCCATATTGGACTCTATT+GGG | + | chr2_2:6402881-6402900 | Msa0233920:CDS | 40.0% | |
| TACCCCAATAGAGTCCAATA+TGG | - | chr2_2:6402887-6402906 | None:intergenic | 40.0% | |
| TCATTTGCACCATTTCCAAC+TGG | + | chr2_2:6402972-6402991 | Msa0233920:CDS | 40.0% | |
| TTGGATGCTCAAAGTTCAAC+AGG | - | chr2_2:6403221-6403240 | None:intergenic | 40.0% | |
| ! | AGGCATTGCTTTCATCTTCT+TGG | - | chr2_2:6403244-6403263 | None:intergenic | 40.0% |
| AGAAGATGAAAGCAATGCCT+AGG | + | chr2_2:6403244-6403263 | Msa0233920:CDS | 40.0% | |
| !! | TCAATGTTGATTCTCAGTCG+AGG | + | chr2_2:6403301-6403320 | Msa0233920:CDS | 40.0% |
| ! | GGGTTTGTTTGAAGGGGAAT+AGG | - | chr2_2:6402050-6402069 | None:intergenic | 45.0% |
| AGATTAGACCTGCAAACCGT+AGG | + | chr2_2:6402323-6402342 | Msa0233920:intron | 45.0% | |
| ! | TCTTTTCTCCTACGGTTTGC+AGG | - | chr2_2:6402334-6402353 | None:intergenic | 45.0% |
| ! | CAGTATGGACTATCAAAGGG+AGG | + | chr2_2:6402614-6402633 | Msa0233920:CDS | 45.0% |
| ATATCGGACACTTCGTGACA+GGG | + | chr2_2:6402664-6402683 | Msa0233920:CDS | 45.0% | |
| ! | CTTTGAGGACTTGATCAGCA+GGG | - | chr2_2:6402697-6402716 | None:intergenic | 45.0% |
| ! | TCTTTGAGGACTTGATCAGC+AGG | - | chr2_2:6402698-6402717 | None:intergenic | 45.0% |
| ! | TAGGGTTCTGATGGCCATAT+TGG | + | chr2_2:6402870-6402889 | Msa0233920:intron | 45.0% |
| GGCCATATTGGACTCTATTG+GGG | + | chr2_2:6402882-6402901 | Msa0233920:CDS | 45.0% | |
| !! | TATTGGGGTATTGCTGCTGA+TGG | + | chr2_2:6402897-6402916 | Msa0233920:CDS | 45.0% |
| ! | TATTGCTGCTGATGGTTCTG+TGG | + | chr2_2:6402905-6402924 | Msa0233920:CDS | 45.0% |
| AATGCCTAGGATAGACAGTG+AGG | + | chr2_2:6403257-6403276 | Msa0233920:CDS | 45.0% | |
| ATGCCTAGGATAGACAGTGA+GGG | + | chr2_2:6403258-6403277 | Msa0233920:CDS | 45.0% | |
| !! | ACAGTGAGGGTGTTATGTGT+GGG | + | chr2_2:6403271-6403290 | Msa0233920:CDS | 45.0% |
| AATCAAATGATGCCACGCGT+CGG | + | chr2_2:6403324-6403343 | Msa0233920:CDS | 45.0% | |
| TGAAGCTAACTGGGCTACTT+GGG | + | chr2_2:6403350-6403369 | Msa0233920:CDS | 45.0% | |
| ! | GGGTTTGTTTGAAGGGGAAT+AGG | - | chr2_2:6402050-6402069 | None:intergenic | 45.0% |
| AGATTAGACCTGCAAACCGT+AGG | + | chr2_2:6402323-6402342 | Msa0233920:intron | 45.0% | |
| ! | TCTTTTCTCCTACGGTTTGC+AGG | - | chr2_2:6402334-6402353 | None:intergenic | 45.0% |
| ! | CAGTATGGACTATCAAAGGG+AGG | + | chr2_2:6402614-6402633 | Msa0233920:CDS | 45.0% |
| ATATCGGACACTTCGTGACA+GGG | + | chr2_2:6402664-6402683 | Msa0233920:CDS | 45.0% | |
| ! | CTTTGAGGACTTGATCAGCA+GGG | - | chr2_2:6402697-6402716 | None:intergenic | 45.0% |
| ! | TCTTTGAGGACTTGATCAGC+AGG | - | chr2_2:6402698-6402717 | None:intergenic | 45.0% |
| ! | TAGGGTTCTGATGGCCATAT+TGG | + | chr2_2:6402870-6402889 | Msa0233920:intron | 45.0% |
| GGCCATATTGGACTCTATTG+GGG | + | chr2_2:6402882-6402901 | Msa0233920:CDS | 45.0% | |
| !! | TATTGGGGTATTGCTGCTGA+TGG | + | chr2_2:6402897-6402916 | Msa0233920:CDS | 45.0% |
| ! | TATTGCTGCTGATGGTTCTG+TGG | + | chr2_2:6402905-6402924 | Msa0233920:CDS | 45.0% |
| AATGCCTAGGATAGACAGTG+AGG | + | chr2_2:6403257-6403276 | Msa0233920:CDS | 45.0% | |
| ATGCCTAGGATAGACAGTGA+GGG | + | chr2_2:6403258-6403277 | Msa0233920:CDS | 45.0% | |
| !! | ACAGTGAGGGTGTTATGTGT+GGG | + | chr2_2:6403271-6403290 | Msa0233920:CDS | 45.0% |
| AATCAAATGATGCCACGCGT+CGG | + | chr2_2:6403324-6403343 | Msa0233920:CDS | 45.0% | |
| TGAAGCTAACTGGGCTACTT+GGG | + | chr2_2:6403350-6403369 | Msa0233920:CDS | 45.0% | |
| !! | ATTATATTTCAAATAATATT+AGG | + | chr2_2:6402363-6402382 | Msa0233920:intron | 5.0% |
| !! | ATTATATTTCAAATAATATT+AGG | + | chr2_2:6402363-6402382 | Msa0233920:intron | 5.0% |
| GCTGGACTGTTAAGCTCCTT+TGG | - | chr2_2:6401917-6401936 | None:intergenic | 50.0% | |
| ACTATCAAAGGGAGGCAACG+AGG | + | chr2_2:6402622-6402641 | Msa0233920:CDS | 50.0% | |
| CATATCGGACACTTCGTGAC+AGG | + | chr2_2:6402663-6402682 | Msa0233920:CDS | 50.0% | |
| TATCGGACACTTCGTGACAG+GGG | + | chr2_2:6402665-6402684 | Msa0233920:CDS | 50.0% | |
| AGGACTTGATCAGCAGGGTA+TGG | - | chr2_2:6402692-6402711 | None:intergenic | 50.0% | |
| ACACCCTCACTGTCTATCCT+AGG | - | chr2_2:6403264-6403283 | None:intergenic | 50.0% | |
| !! | GACAGTGAGGGTGTTATGTG+TGG | + | chr2_2:6403270-6403289 | Msa0233920:CDS | 50.0% |
| !! | CAGTGAGGGTGTTATGTGTG+GGG | + | chr2_2:6403272-6403291 | Msa0233920:CDS | 50.0% |
| CGTCGGAAGTGAAGCTAACT+GGG | + | chr2_2:6403341-6403360 | Msa0233920:CDS | 50.0% | |
| GTGAAGCTAACTGGGCTACT+TGG | + | chr2_2:6403349-6403368 | Msa0233920:CDS | 50.0% | |
| GAAGCTAACTGGGCTACTTG+GGG | + | chr2_2:6403351-6403370 | Msa0233920:CDS | 50.0% | |
| GCTGGACTGTTAAGCTCCTT+TGG | - | chr2_2:6401917-6401936 | None:intergenic | 50.0% | |
| ACTATCAAAGGGAGGCAACG+AGG | + | chr2_2:6402622-6402641 | Msa0233920:CDS | 50.0% | |
| CATATCGGACACTTCGTGAC+AGG | + | chr2_2:6402663-6402682 | Msa0233920:CDS | 50.0% | |
| TATCGGACACTTCGTGACAG+GGG | + | chr2_2:6402665-6402684 | Msa0233920:CDS | 50.0% | |
| AGGACTTGATCAGCAGGGTA+TGG | - | chr2_2:6402692-6402711 | None:intergenic | 50.0% | |
| ACACCCTCACTGTCTATCCT+AGG | - | chr2_2:6403264-6403283 | None:intergenic | 50.0% | |
| !! | GACAGTGAGGGTGTTATGTG+TGG | + | chr2_2:6403270-6403289 | Msa0233920:CDS | 50.0% |
| !! | CAGTGAGGGTGTTATGTGTG+GGG | + | chr2_2:6403272-6403291 | Msa0233920:CDS | 50.0% |
| CGTCGGAAGTGAAGCTAACT+GGG | + | chr2_2:6403341-6403360 | Msa0233920:CDS | 50.0% | |
| GTGAAGCTAACTGGGCTACT+TGG | + | chr2_2:6403349-6403368 | Msa0233920:CDS | 50.0% | |
| GAAGCTAACTGGGCTACTTG+GGG | + | chr2_2:6403351-6403370 | Msa0233920:CDS | 50.0% | |
| TTAGCTTCACTTCCGACGCG+TGG | - | chr2_2:6403339-6403358 | None:intergenic | 55.0% | |
| GCGTCGGAAGTGAAGCTAAC+TGG | + | chr2_2:6403340-6403359 | Msa0233920:CDS | 55.0% | |
| TTAGCTTCACTTCCGACGCG+TGG | - | chr2_2:6403339-6403358 | None:intergenic | 55.0% | |
| GCGTCGGAAGTGAAGCTAAC+TGG | + | chr2_2:6403340-6403359 | Msa0233920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 6401698 | 6403576 | 6401698 | ID=Msa0233920;Name=Msa0233920 |
| chr2_2 | mRNA | 6401698 | 6403576 | 6401698 | ID=Msa0233920-mRNA-1;Parent=Msa0233920;Name=Msa0233920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=86|1|1|1|0.75|0.6|5|196|251 |
| chr2_2 | exon | 6401698 | 6401728 | 6401698 | ID=Msa0233920-mRNA-1:exon:2818;Parent=Msa0233920-mRNA-1 |
| chr2_2 | exon | 6401823 | 6402083 | 6401823 | ID=Msa0233920-mRNA-1:exon:2819;Parent=Msa0233920-mRNA-1 |
| chr2_2 | exon | 6402541 | 6402781 | 6402541 | ID=Msa0233920-mRNA-1:exon:2820;Parent=Msa0233920-mRNA-1 |
| chr2_2 | exon | 6402873 | 6402993 | 6402873 | ID=Msa0233920-mRNA-1:exon:2821;Parent=Msa0233920-mRNA-1 |
| chr2_2 | exon | 6403193 | 6403576 | 6403193 | ID=Msa0233920-mRNA-1:exon:2822;Parent=Msa0233920-mRNA-1 |
| chr2_2 | five_prime_UTR | 6401698 | 6401728 | 6401698 | ID=Msa0233920-mRNA-1:five_prime_utr;Parent=Msa0233920-mRNA-1 |
| chr2_2 | five_prime_UTR | 6401823 | 6401877 | 6401823 | ID=Msa0233920-mRNA-1:five_prime_utr;Parent=Msa0233920-mRNA-1 |
| chr2_2 | CDS | 6401878 | 6402083 | 6401878 | ID=Msa0233920-mRNA-1:cds;Parent=Msa0233920-mRNA-1 |
| chr2_2 | CDS | 6402541 | 6402781 | 6402541 | ID=Msa0233920-mRNA-1:cds;Parent=Msa0233920-mRNA-1 |
| chr2_2 | CDS | 6402873 | 6402993 | 6402873 | ID=Msa0233920-mRNA-1:cds;Parent=Msa0233920-mRNA-1 |
| chr2_2 | CDS | 6403193 | 6403380 | 6403193 | ID=Msa0233920-mRNA-1:cds;Parent=Msa0233920-mRNA-1 |
| chr2_2 | three_prime_UTR | 6403381 | 6403576 | 6403381 | ID=Msa0233920-mRNA-1:three_prime_utr;Parent=Msa0233920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
