AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0977320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0977320 MtrunA17_Chr6g0456681 95.755 424 18 0 1 424 1 424 0.0 832
Msa0977320 MtrunA17_Chr6g0456691 53.256 430 182 7 1 415 1 426 6.15e-174 493
Msa0977320 MtrunA17_Chr2g0283851 51.268 355 161 9 61 408 51 400 4.15e-132 386
Msa0977320 MtrunA17_Chr7g0221281 57.563 238 101 0 174 411 2 239 1.79e-105 313
Msa0977320 MtrunA17_Chr8g0391481 39.529 382 206 10 47 414 9 379 1.31e-98 299
Msa0977320 MtrunA17_Chr8g0387921 40.449 356 201 6 59 408 69 419 2.64e-97 297
Msa0977320 MtrunA17_Chr8g0347321 41.643 353 196 5 61 408 92 439 3.19e-97 298
Msa0977320 MtrunA17_Chr6g0451321 41.287 373 199 10 41 408 100 457 1.88e-96 297
Msa0977320 MtrunA17_Chr7g0226991 40.669 359 190 8 62 408 55 402 3.11e-96 294
Msa0977320 MtrunA17_Chr5g0414061 38.200 411 217 12 24 408 39 438 6.06e-93 287
Msa0977320 MtrunA17_Chr3g0140371 39.674 368 197 9 58 413 12 366 2.72e-91 280
Msa0977320 MtrunA17_Chr5g0414091 39.437 355 201 7 62 408 83 431 4.56e-91 282
Msa0977320 MtrunA17_Chr5g0414041 41.160 362 195 7 57 408 80 433 4.77e-88 274
Msa0977320 MtrunA17_Chr5g0414051 37.879 396 216 13 31 408 37 420 7.30e-87 271
Msa0977320 MtrunA17_Chr6g0476041 33.245 379 223 8 44 408 152 514 1.21e-79 255
Msa0977320 MtrunA17_Chr1g0188191 34.309 376 218 8 51 408 217 581 5.16e-79 255
Msa0977320 MtrunA17_Chr7g0221271 45.933 209 93 6 1 193 1 205 2.92e-58 189
Msa0977320 MtrunA17_Chr7g0259711 33.148 359 209 12 64 408 91 432 1.78e-56 192
Msa0977320 MtrunA17_Chr4g0071391 31.522 368 217 12 62 415 107 453 9.58e-55 188
Msa0977320 MtrunA17_Chr2g0287901 33.173 416 240 16 18 416 50 444 3.81e-54 186
Msa0977320 MtrunA17_Chr1g0175671 33.780 373 186 15 64 408 170 509 6.77e-52 182
Msa0977320 MtrunA17_Chr4g0005491 32.958 355 211 11 64 404 62 403 8.13e-52 179
Msa0977320 MtrunA17_Chr8g0368461 30.864 405 216 13 36 408 156 528 6.05e-51 179
Msa0977320 MtrunA17_Chr5g0413271 31.373 357 208 10 64 408 145 476 7.45e-51 178
Msa0977320 MtrunA17_Chr7g0243301 31.139 395 245 14 23 404 25 405 8.20e-50 174
Msa0977320 MtrunA17_Chr7g0269991 31.856 361 200 11 64 408 137 467 9.70e-50 175
Msa0977320 MtrunA17_Chr7g0258851 32.973 370 193 15 64 408 248 587 1.08e-49 177
Msa0977320 MtrunA17_Chr5g0437601 31.593 364 219 11 58 408 78 424 4.74e-49 172
Msa0977320 MtrunA17_Chr1g0213281 30.457 394 217 13 45 408 153 519 1.13e-48 173
Msa0977320 MtrunA17_Chr7g0221291 47.126 174 69 4 1 155 1 170 1.21e-48 163
Msa0977320 MtrunA17_Chr6g0455901 30.979 439 242 14 13 415 10 423 1.56e-47 168
Msa0977320 MtrunA17_Chr3g0114101 30.447 358 220 9 64 408 89 430 3.15e-47 167
Msa0977320 MtrunA17_Chr8g0384151 31.579 361 213 11 56 408 82 416 5.06e-47 167
Msa0977320 MtrunA17_Chr3g0105301 32.162 370 198 16 54 404 37 372 9.89e-47 165
Msa0977320 MtrunA17_Chr8g0360521 28.689 366 227 12 62 412 69 415 1.06e-46 166
Msa0977320 MtrunA17_Chr4g0068111 29.894 378 225 10 56 416 106 460 1.55e-46 166
Msa0977320 MtrunA17_Chr4g0005481 30.328 366 223 12 56 408 100 446 3.58e-46 165
Msa0977320 MtrunA17_Chr3g0085071 30.874 366 186 14 60 404 40 359 1.62e-45 161
Msa0977320 MtrunA17_Chr3g0085081 29.363 361 200 12 58 404 25 344 3.58e-45 160
Msa0977320 MtrunA17_Chr5g0430371 28.351 388 212 12 51 408 48 399 4.06e-45 161
Msa0977320 MtrunA17_Chr4g0070341 30.978 368 219 13 56 408 124 471 1.30e-44 161
Msa0977320 MtrunA17_Chr3g0113671 30.056 356 222 10 62 404 104 445 1.10e-43 158
Msa0977320 MtrunA17_Chr3g0091031 29.661 354 208 10 58 404 25 344 2.03e-43 155
Msa0977320 MtrunA17_Chr5g0414081 36.408 206 120 6 220 415 2 206 5.43e-43 150
Msa0977320 MtrunA17_Chr4g0006991 31.285 358 217 13 64 408 86 427 3.05e-41 151
Msa0977320 MtrunA17_Chr4g0045951 30.612 392 225 14 20 404 7 358 1.59e-40 148
Msa0977320 MtrunA17_Chr3g0097891 29.609 358 216 12 54 404 18 346 2.85e-40 147
Msa0977320 MtrunA17_Chr4g0045941 30.508 354 213 12 54 404 23 346 6.73e-40 145
Msa0977320 MtrunA17_Chr8g0384421 27.374 358 233 9 62 408 131 472 1.21e-39 147
Msa0977320 MtrunA17_Chr2g0314801 30.343 379 224 11 30 404 7 349 1.44e-39 145
Msa0977320 MtrunA17_Chr2g0283581 29.223 373 215 14 48 410 27 360 5.15e-39 144
Msa0977320 MtrunA17_Chr7g0242701 30.163 368 216 13 60 408 82 427 9.72e-39 144
Msa0977320 MtrunA17_Chr5g0413851 32.133 361 207 15 57 412 35 362 1.32e-38 142
Msa0977320 MtrunA17_Chr1g0171171 28.492 358 224 10 56 408 45 375 2.34e-38 142
Msa0977320 MtrunA17_Chr2g0325481 28.653 349 205 11 64 404 50 362 3.27e-38 142
Msa0977320 MtrunA17_Chr5g0437291 27.945 365 237 10 62 412 163 515 6.64e-38 144
Msa0977320 MtrunA17_Chr3g0126021 27.317 410 236 13 35 415 90 466 1.82e-36 139
Msa0977320 MtrunA17_Chr4g0041011 27.557 352 215 10 64 409 47 364 1.02e-35 135
Msa0977320 MtrunA17_Chr1g0210771 26.479 355 216 9 62 404 57 378 1.73e-34 132
Msa0977320 MtrunA17_Chr2g0314791 28.612 353 208 13 64 408 29 345 4.48e-33 127
Msa0977320 MtrunA17_Chr4g0049421 26.849 365 227 10 64 408 48 392 3.12e-32 126
Msa0977320 MtrunA17_Chr1g0178081 27.824 363 182 13 62 413 53 346 1.41e-30 120
Msa0977320 MtrunA17_Chr1g0209921 30.364 247 148 8 59 300 39 266 6.15e-26 105
Msa0977320 MtrunA17_Chr7g0275501 43.077 65 36 1 344 407 4 68 1.44e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0977320 AT5G15900.1 47.407 405 201 7 27 424 26 425 3.21e-143 415
Msa0977320 AT5G15900.2 47.407 405 201 7 27 424 45 444 7.22e-143 415
Msa0977320 AT3G02440.1 49.711 346 169 2 64 408 127 468 1.09e-135 398
Msa0977320 AT3G02440.2 49.711 346 169 2 64 408 135 476 1.61e-135 398
Msa0977320 AT5G15890.1 48.387 372 179 7 43 412 166 526 3.33e-135 398
Msa0977320 AT3G28150.1 40.517 348 197 5 64 408 70 410 6.27e-103 312
Msa0977320 AT1G01430.1 39.048 420 224 15 5 409 47 449 4.71e-99 303
Msa0977320 AT4G01080.1 40.099 404 208 11 16 405 44 427 3.45e-96 295
Msa0977320 AT1G70230.1 40.974 349 186 7 64 408 79 411 4.48e-94 289
Msa0977320 AT4G23790.1 39.831 354 201 7 60 405 75 424 1.13e-93 289
Msa0977320 AT4G11090.1 37.255 357 210 7 60 408 75 425 1.73e-88 275
Msa0977320 AT5G51640.1 34.349 361 211 7 64 408 138 488 2.66e-77 249
Msa0977320 AT4G25360.1 31.910 398 236 7 38 415 149 531 2.53e-72 236
Msa0977320 AT4G25360.2 31.910 398 236 7 38 415 149 531 2.53e-72 236
Msa0977320 AT5G20590.1 31.937 382 223 13 48 414 126 485 7.50e-58 197
Msa0977320 AT5G19160.1 34.316 373 210 13 63 418 98 452 1.53e-57 196
Msa0977320 AT3G06080.2 33.862 378 214 13 63 423 102 460 1.95e-56 193
Msa0977320 AT1G60790.1 31.383 376 220 11 51 408 177 532 1.33e-54 190
Msa0977320 AT3G62390.1 32.609 368 212 13 56 409 128 473 3.95e-52 182
Msa0977320 AT3G12060.1 31.959 388 209 13 62 424 194 551 4.57e-51 181
Msa0977320 AT5G06700.1 32.564 390 206 15 49 411 238 597 4.64e-51 182
Msa0977320 AT3G11030.1 31.579 361 217 12 62 408 104 448 9.81e-51 177
Msa0977320 AT5G06230.2 32.391 389 226 12 45 415 2 371 1.03e-49 173
Msa0977320 AT5G06230.1 32.391 389 226 12 45 415 43 412 2.35e-49 173
Msa0977320 AT5G49340.1 30.203 394 243 10 46 424 81 457 2.47e-48 171
Msa0977320 AT2G40320.1 30.769 364 222 10 58 408 76 422 2.50e-48 171
Msa0977320 AT1G73140.1 30.914 372 216 15 62 416 65 412 4.86e-47 167
Msa0977320 AT5G01620.2 31.215 362 218 11 60 408 106 449 1.22e-46 166
Msa0977320 AT5G01620.1 31.215 362 218 11 60 408 106 449 1.22e-46 166
Msa0977320 AT5G01620.3 31.215 362 218 11 60 408 114 457 1.48e-46 166
Msa0977320 AT3G11570.1 33.238 349 207 12 76 415 95 426 4.62e-46 164
Msa0977320 AT2G40150.1 29.661 354 228 8 64 404 71 416 3.62e-45 162
Msa0977320 AT3G55990.1 30.508 354 219 9 64 404 140 479 7.52e-45 162
Msa0977320 AT2G38320.1 29.742 427 258 20 8 415 7 410 1.43e-44 160
Msa0977320 AT2G30010.1 30.270 370 204 13 64 408 56 396 1.55e-44 160
Msa0977320 AT2G30010.2 30.270 370 204 13 64 408 99 439 2.10e-44 160
Msa0977320 AT2G40160.2 29.570 372 229 13 64 417 77 433 2.26e-44 160
Msa0977320 AT2G40160.1 30.028 363 221 13 64 408 77 424 3.69e-44 159
Msa0977320 AT2G30900.1 28.906 384 229 13 30 404 13 361 6.10e-44 157
Msa0977320 AT5G58600.1 29.132 357 219 13 64 408 66 400 2.30e-43 157
Msa0977320 AT2G14530.1 30.311 386 191 17 64 410 62 408 6.11e-43 155
Msa0977320 AT1G29050.1 29.006 362 212 12 58 410 55 380 8.34e-43 154
Msa0977320 AT1G48880.1 31.445 353 206 10 64 408 115 439 3.25e-42 154
Msa0977320 AT5G64470.3 27.989 368 230 11 56 408 47 394 1.32e-41 152
Msa0977320 AT5G64470.2 27.807 374 229 12 56 408 47 400 3.68e-41 151
Msa0977320 AT5G64020.1 28.495 372 219 11 64 408 57 408 1.24e-40 149
Msa0977320 AT2G34070.1 27.198 364 223 12 55 410 56 385 1.59e-40 149
Msa0977320 AT5G01360.2 28.926 363 220 11 64 408 36 378 1.68e-40 148
Msa0977320 AT5G01360.1 28.926 363 220 11 64 408 92 434 3.47e-40 149
Msa0977320 AT3G14850.2 31.609 348 206 12 61 404 31 350 1.90e-39 145
Msa0977320 AT2G38320.2 31.304 345 202 16 88 415 1 327 2.27e-39 144
Msa0977320 AT5G19160.2 34.553 246 146 6 63 301 98 335 1.78e-38 142
Msa0977320 AT3G06080.1 35.600 250 140 8 63 302 102 340 2.91e-37 139
Msa0977320 AT2G42570.1 30.028 353 190 13 64 401 47 357 2.34e-36 137
Msa0977320 AT1G78710.1 28.531 354 220 12 58 408 33 356 2.38e-36 137
Msa0977320 AT5G20680.6 26.142 394 228 14 42 408 100 457 6.85e-35 135
Msa0977320 AT5G20680.2 26.142 394 228 14 42 408 176 533 1.09e-34 135
Msa0977320 AT5G20680.4 26.142 394 228 14 42 408 194 551 1.17e-34 135
Msa0977320 AT5G20680.1 26.142 394 228 14 42 408 194 551 1.17e-34 135
Msa0977320 AT5G20680.3 26.142 394 228 14 42 408 194 551 1.17e-34 135
Msa0977320 AT5G20680.5 26.142 394 228 14 42 408 194 551 1.17e-34 135
Msa0977320 AT5G20590.2 31.835 267 156 10 48 302 126 378 4.86e-34 131
Msa0977320 AT2G31110.2 27.456 397 229 16 27 406 5 359 5.76e-34 130
Msa0977320 AT3G62390.2 32.246 276 154 10 48 303 112 374 4.43e-33 129
Msa0977320 AT5G06230.3 32.014 278 158 10 45 304 43 307 2.76e-31 122
Msa0977320 AT2G37720.1 24.289 387 212 10 60 408 139 482 2.09e-30 122
Msa0977320 AT3G54260.1 25.424 354 217 10 64 404 51 370 4.19e-30 120
Msa0977320 AT5G64470.4 27.915 283 175 8 56 323 47 315 4.28e-30 119
Msa0977320 AT5G58600.2 29.918 244 144 10 64 300 66 289 6.59e-30 117
Msa0977320 AT5G64470.1 28.014 282 174 8 56 322 47 314 8.49e-30 118
Msa0977320 AT2G40160.3 29.098 244 158 7 64 301 77 311 1.36e-28 114
Msa0977320 AT2G30900.2 28.731 268 168 8 30 294 13 260 4.35e-27 109
Msa0977320 AT2G31110.3 30.876 217 131 7 27 238 5 207 2.88e-22 96.3
Msa0977320 AT1G78710.2 46.465 99 49 3 58 155 26 121 3.01e-20 90.9
Msa0977320 AT3G14850.1 28.727 275 164 12 134 404 1 247 3.61e-16 78.2
Msa0977320 AT2G34070.2 24.561 285 173 12 134 410 1 251 3.05e-14 72.8

Find 103 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTATTGTTCTATAAAA+AGG 0.105994 6_4:-12002852 Msa0977320:CDS
AAACCAACTTTACACTAAAT+TGG 0.173915 6_4:+12005153 None:intergenic
GAGCTATGGTTGAGGATTTA+AGG 0.205720 6_4:+12005234 None:intergenic
ATAGCATGTCCATAGTTATT+AGG 0.217751 6_4:+12002461 None:intergenic
ACAGATCTTGCTCACTATTA+TGG 0.223711 6_4:-12002788 Msa0977320:CDS
TTGGCTACGACGCTTACTTC+TGG 0.234971 6_4:+12004945 None:intergenic
TTCATTTCTTCCTTGCTAAA+TGG 0.245310 6_4:+12002623 None:intergenic
CTCATTGGTTTGAAACTTCA+TGG 0.249729 6_4:+12004312 None:intergenic
CGCTCGGGAGAACCTGAATT+AGG 0.259236 6_4:-12005057 Msa0977320:five_prime_UTR
TCCTTTGATCTCACAAAATA+TGG 0.260002 6_4:+12003004 None:intergenic
ATATAAGTTGTCCCTAATTC+AGG 0.293344 6_4:+12005045 None:intergenic
GCTTGTTAGAGGAAAGAAAA+TGG 0.294779 6_4:-12003933 Msa0977320:CDS
AAGGAAGAAATGAACTTAAA+TGG 0.302329 6_4:-12002614 Msa0977320:CDS
GAATGTCTTGATTATCATAT+TGG 0.311638 6_4:-12002087 Msa0977320:three_prime_UTR
TCACTATTATGGTTACAAAA+TGG 0.333100 6_4:-12002777 Msa0977320:CDS
CAATTCTTAGAGCTTGTTAG+AGG 0.346212 6_4:-12003944 Msa0977320:CDS
ATGGTTACAAAATGGCATTT+AGG 0.351692 6_4:-12002769 Msa0977320:CDS
GTACAAAATCACACATCTTA+TGG 0.354994 6_4:-12002344 Msa0977320:CDS
AAATTTAGTTGGCTATGAAT+TGG 0.361146 6_4:-12004658 Msa0977320:five_prime_UTR
ATAGTGATTTAGCTATAATA+TGG 0.363074 6_4:-12004477 Msa0977320:five_prime_UTR
GAATTGGCTTGCAGCCATAA+AGG 0.365974 6_4:-12004642 Msa0977320:five_prime_UTR
CATGTTACATTGTTATAGTA+AGG 0.368127 6_4:+12004079 None:intergenic
ATTTCACCCTTGGAAATCTA+TGG 0.368885 6_4:-12003030 Msa0977320:CDS
GATGGACACCCTAATAACTA+TGG 0.373219 6_4:-12002470 Msa0977320:CDS
TTTAATTAATCAAATTTAGT+TGG 0.373530 6_4:-12004669 Msa0977320:five_prime_UTR
TAGCATGTCCATAGTTATTA+GGG 0.375427 6_4:+12002462 None:intergenic
CTTCCCATTGAGAATCTCAT+TGG 0.386089 6_4:+12004297 None:intergenic
AACGGAAGATCGCATTCATT+TGG 0.397865 6_4:+12003980 None:intergenic
TGGCTACGACGCTTACTTCT+GGG 0.404274 6_4:+12004946 None:intergenic
ATTAAGTGGTTGATTAGATT+CGG 0.405208 6_4:-12005092 Msa0977320:five_prime_UTR
CCTCAACCATAGCTCTTCAT+TGG 0.409339 6_4:-12005226 Msa0977320:five_prime_UTR
CAAACCAATGAGATTCTCAA+TGG 0.412007 6_4:-12004301 Msa0977320:CDS
GCTCGGGAGAACCTGAATTA+GGG 0.421246 6_4:-12005056 Msa0977320:five_prime_UTR
AGGTTTAGTAATTTGAAGTT+CGG 0.422647 6_4:+12004973 None:intergenic
AACTCATTCCATGTATCAAC+AGG 0.425298 6_4:+12002386 None:intergenic
GAACAAAACTGCATGAAGTT+TGG 0.427362 6_4:-12004040 Msa0977320:CDS
TCGGATTACAATTTCACCCT+TGG 0.436618 6_4:-12003040 Msa0977320:CDS
AAACCAATTTAGTGTAAAGT+TGG 0.441737 6_4:-12005156 Msa0977320:five_prime_UTR
TTAAAGGAAGTAACTAAGAT+TGG 0.443172 6_4:+12004822 None:intergenic
TTTATTTAATATCTAGCAAA+GGG 0.449986 6_4:+12004721 None:intergenic
TTTACAATGATTGTGTTCAT+TGG 0.450773 6_4:-12002421 Msa0977320:CDS
ATAACAATGTAACATGCAAA+TGG 0.453059 6_4:-12004072 Msa0977320:CDS
GAAACAGTTTATATAAATGT+TGG 0.456218 6_4:+12004366 None:intergenic
TGGTTGATTAGATTCGGTTA+AGG 0.456742 6_4:-12005086 Msa0977320:five_prime_UTR
GATCATTACTTACTTGACTT+AGG 0.459746 6_4:+12003858 None:intergenic
TGTGTTCATTGGTGTTTACC+TGG 0.460600 6_4:-12002410 Msa0977320:CDS
ATCAACTTATTAGAATTAAG+TGG 0.460902 6_4:-12005106 Msa0977320:five_prime_UTR
GTGTTTCTCATAAGAATAAG+AGG 0.461875 6_4:+12004208 None:intergenic
GAGAATGGAGATTGGAACAA+AGG 0.466521 6_4:-12002668 Msa0977320:CDS
TTGTATTTACACAAAGGGTA+GGG 0.471262 6_4:-12002213 Msa0977320:three_prime_UTR
AATTGGCTTGCAGCCATAAA+GGG 0.474031 6_4:-12004641 Msa0977320:five_prime_UTR
GACGCTTACTTCTGGGGAAG+AGG 0.476025 6_4:+12004953 None:intergenic
TTTGTATTTACACAAAGGGT+AGG 0.484973 6_4:-12002214 Msa0977320:three_prime_UTR
ATGGAGATTGGAACAAAGGA+GGG 0.486473 6_4:-12002664 Msa0977320:CDS
ATGAGTATCTTCGTTGGAGA+TGG 0.487293 6_4:-12004006 Msa0977320:CDS
GATCAATGATCGTTATAGTC+AGG 0.487465 6_4:+12005016 None:intergenic
TAGTTATTAGGGTGTCCATC+AGG 0.500572 6_4:+12002473 None:intergenic
TACCTGGACCTGTTGATACA+TGG 0.501964 6_4:-12002394 Msa0977320:CDS
CATTACTTACTTGACTTAGG+AGG 0.511465 6_4:+12003861 None:intergenic
AACAACAAAACAGAAACAAA+AGG 0.514197 6_4:-12004145 Msa0977320:CDS
CTGCATGAAGTTTGGTAGGC+CGG 0.514724 6_4:-12004032 Msa0977320:CDS
ATGATGAGAAGAAGAGTGAA+TGG 0.519581 6_4:+12004235 None:intergenic
CAACGAAGATACTCATCGTC+CGG 0.521505 6_4:+12004013 None:intergenic
AAACCAATGAGATTCTCAAT+GGG 0.522804 6_4:-12004300 Msa0977320:CDS
TTCCATGTATCAACAGGTCC+AGG 0.527258 6_4:+12002392 None:intergenic
TGTATTTACACAAAGGGTAG+GGG 0.530133 6_4:-12002212 Msa0977320:three_prime_UTR
TGAATTTAAAGTAGCACAAG+AGG 0.532011 6_4:-12002558 Msa0977320:CDS
TAATAACTATGGACATGCTA+TGG 0.532374 6_4:-12002459 Msa0977320:CDS
AATTGGATTCCTCATTCTGA+AGG 0.532528 6_4:-12004103 Msa0977320:CDS
GACATAGTGATCATCTCAGC+AGG 0.540120 6_4:-12002890 Msa0977320:CDS
GTGTAAACAATCATGTATAC+AGG 0.540142 6_4:+12004885 None:intergenic
CAAACGTCATATATTTCAAA+CGG 0.541619 6_4:-12003072 Msa0977320:CDS
CAAGAGGAAGCATCAAAGAA+AGG 0.542433 6_4:-12002542 Msa0977320:CDS
TGTTTGACAGAAGACATGTT+TGG 0.545383 6_4:+12004172 None:intergenic
CGGTTAAGGACGAATCGCTC+GGG 0.546005 6_4:-12005072 Msa0977320:five_prime_UTR
GGCTACGACGCTTACTTCTG+GGG 0.547073 6_4:+12004947 None:intergenic
ATTTATTTAATATCTAGCAA+AGG 0.550016 6_4:+12004720 None:intergenic
TATTTATGAGAAACATCCTC+GGG 0.552056 6_4:+12003100 None:intergenic
TCGGTTAAGGACGAATCGCT+CGG 0.560509 6_4:-12005073 Msa0977320:five_prime_UTR
TGATCATCTCAGCAGGACAT+TGG 0.561231 6_4:-12002883 Msa0977320:CDS
TAGTAAGGTCCTTCAGAATG+AGG 0.564875 6_4:+12004094 None:intergenic
TCTCCATTCTCAAAATGTGA+TGG 0.565514 6_4:+12002680 None:intergenic
AATGGAGATTGGAACAAAGG+AGG 0.579340 6_4:-12002665 Msa0977320:CDS
TAATTTGAAGTTCGGACGAG+AGG 0.584894 6_4:+12004981 None:intergenic
ATTATGTTGTTGAGACCTGA+TGG 0.586906 6_4:-12002488 Msa0977320:CDS
GTATTTATGAGAAACATCCT+CGG 0.591066 6_4:+12003099 None:intergenic
GCCAAGATCGCTCCGTGAGG+AGG 0.591489 6_4:-12004927 Msa0977320:five_prime_UTR
AAAACTGCATGAAGTTTGGT+AGG 0.593514 6_4:-12004036 Msa0977320:CDS
ACAGAAGACATGTTTGGTGA+TGG 0.600714 6_4:+12004178 None:intergenic
CATGAAATTATATGTAGATG+AGG 0.602589 6_4:-12002948 Msa0977320:CDS
CTTGTTGGATGCAACAAATG+TGG 0.604356 6_4:-12002824 Msa0977320:CDS
CCAATGAAGAGCTATGGTTG+AGG 0.612188 6_4:+12005226 None:intergenic
ATGAAGCCAATGAAGAGCTA+TGG 0.622404 6_4:+12005220 None:intergenic
TAGATGAGGTAGATGAAGCA+TGG 0.622571 6_4:-12002934 Msa0977320:CDS
TGGATGCAACAAATGTGGAA+TGG 0.636986 6_4:-12002819 Msa0977320:CDS
AATTGAGTTGCATTAAACAA+CGG 0.638503 6_4:+12003962 None:intergenic
TGGTGACCATAGATTTCCAA+GGG 0.647447 6_4:+12003024 None:intergenic
GAGGACAAAACCATTTAGCA+AGG 0.652106 6_4:-12002633 Msa0977320:CDS
ATGGTGACCATAGATTTCCA+AGG 0.658722 6_4:+12003023 None:intergenic
CGGACGATGAGTATCTTCGT+TGG 0.671909 6_4:-12004012 Msa0977320:CDS
ACAAAGGAGGGAATTGTGTG+AGG 0.680099 6_4:-12002652 Msa0977320:CDS
AATGCTATTACACCTCCTCA+CGG 0.704407 6_4:+12004915 None:intergenic
GTAGCCAAGATCGCTCCGTG+AGG 0.750625 6_4:-12004930 Msa0977320:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAACATAATTAA+AGG + chr6_4:12002564-12002583 None:intergenic 10.0%
!! TTTAATTAATCAAATTTAGT+TGG - chr6_4:12002698-12002717 Msa0977320:CDS 10.0%
!!! TATGTTTTTTTCTTTCTAAA+AGG - chr6_4:12002569-12002588 Msa0977320:CDS 15.0%
!! TTTATTTAATATCTAGCAAA+GGG + chr6_4:12002649-12002668 None:intergenic 15.0%
!! ATTTATTTAATATCTAGCAA+AGG + chr6_4:12002650-12002669 None:intergenic 15.0%
!! ATATGTTAAAAAATGCAAAA+GGG + chr6_4:12002679-12002698 None:intergenic 15.0%
!! AATATGTTAAAAAATGCAAA+AGG + chr6_4:12002680-12002699 None:intergenic 15.0%
!!! TAATGATTTTAAAACTAACA+AGG + chr6_4:12002817-12002836 None:intergenic 15.0%
!!! ATTTTTTTTTCTCTTTTTTC+AGG - chr6_4:12004236-12004255 Msa0977320:CDS 15.0%
!!! AAAATTTTCAAGATTTGTTA+AGG + chr6_4:12004637-12004656 None:intergenic 15.0%
!!! ACAAATCTTGAAAATTTTAA+AGG - chr6_4:12004639-12004658 Msa0977320:five_prime_UTR 15.0%
!!! TGTTTATTATTTACTTTTTG+AGG - chr6_4:12005108-12005127 Msa0977320:five_prime_UTR 15.0%
!!! GTTTATTATTTACTTTTTGA+GGG - chr6_4:12005109-12005128 Msa0977320:five_prime_UTR 15.0%
!!! ATTTTTTTGTATTTACACAA+AGG - chr6_4:12005148-12005167 Msa0977320:five_prime_UTR 15.0%
!!! TTTTTTTGTATTTACACAAA+GGG - chr6_4:12005149-12005168 Msa0977320:five_prime_UTR 15.0%
!!! TGTAATTTTTGTATCATATT+TGG - chr6_4:12005255-12005274 Msa0977320:five_prime_UTR 15.0%
!! GATTGAAACTTACTAAAAAT+AGG + chr6_4:12002244-12002263 None:intergenic 20.0%
!! ATCAACTTATTAGAATTAAG+TGG - chr6_4:12002261-12002280 Msa0977320:three_prime_UTR 20.0%
!! TATGTTAAAAAATGCAAAAG+GGG + chr6_4:12002678-12002697 None:intergenic 20.0%
!!! TTTTCACTTTAATTTGACTA+AGG + chr6_4:12002765-12002784 None:intergenic 20.0%
!! ATAGTGATTTAGCTATAATA+TGG - chr6_4:12002890-12002909 Msa0977320:CDS 20.0%
!!! ACTTTAGTTCTGATTTTTTT+TGG + chr6_4:12002979-12002998 None:intergenic 20.0%
!! GAAACAGTTTATATAAATGT+TGG + chr6_4:12003004-12003023 None:intergenic 20.0%
!! AAAAAATACATAAGCATGTT+TGG + chr6_4:12004223-12004242 None:intergenic 20.0%
!! ACCATTATTGTTCTATAAAA+AGG - chr6_4:12004515-12004534 Msa0977320:five_prime_UTR 20.0%
!! CCATTATTGTTCTATAAAAA+GGG - chr6_4:12004516-12004535 Msa0977320:five_prime_UTR 20.0%
!!! AATTTTTGTATCATATTTGG+TGG - chr6_4:12005258-12005277 Msa0977320:five_prime_UTR 20.0%
! TAGCAAAAAAACAGGAATAT+AGG - chr6_4:12002074-12002093 Msa0977320:three_prime_UTR 25.0%
! AAACCAATTTAGTGTAAAGT+TGG - chr6_4:12002211-12002230 Msa0977320:three_prime_UTR 25.0%
! AAACCAACTTTACACTAAAT+TGG + chr6_4:12002217-12002236 None:intergenic 25.0%
! ATTAAGTGGTTGATTAGATT+CGG - chr6_4:12002275-12002294 Msa0977320:three_prime_UTR 25.0%
!! AGGTTTAGTAATTTGAAGTT+CGG + chr6_4:12002397-12002416 None:intergenic 25.0%
! TTAAAGGAAGTAACTAAGAT+TGG + chr6_4:12002548-12002567 None:intergenic 25.0%
!!! TTTTTCACTCTTTGTTTAGT+AGG + chr6_4:12002606-12002625 None:intergenic 25.0%
! AAATTTAGTTGGCTATGAAT+TGG - chr6_4:12002709-12002728 Msa0977320:CDS 25.0%
! AACAACAAAACAGAAACAAA+AGG - chr6_4:12003222-12003241 Msa0977320:intron 25.0%
! CATGTTACATTGTTATAGTA+AGG + chr6_4:12003291-12003310 None:intergenic 25.0%
! ATAACAATGTAACATGCAAA+TGG - chr6_4:12003295-12003314 Msa0977320:intron 25.0%
!! AATTGAGTTGCATTAAACAA+CGG + chr6_4:12003408-12003427 None:intergenic 25.0%
! TTAGATTTCCATCAAAGATT+AGG - chr6_4:12003639-12003658 Msa0977320:intron 25.0%
! ATGAAAAAACTTTGATGTCA+CGG + chr6_4:12003691-12003710 None:intergenic 25.0%
! GAAATGATTAACTAAGAAGA+TGG + chr6_4:12003844-12003863 None:intergenic 25.0%
! CAAACGTCATATATTTCAAA+CGG - chr6_4:12004295-12004314 Msa0977320:CDS 25.0%
!! TTTCAAACGGTATTTCTTTT+CGG - chr6_4:12004308-12004327 Msa0977320:CDS 25.0%
! CATGAAATTATATGTAGATG+AGG - chr6_4:12004419-12004438 Msa0977320:five_prime_UTR 25.0%
!! CCCTTTTTATAGAACAATAA+TGG + chr6_4:12004519-12004538 None:intergenic 25.0%
! TCACTATTATGGTTACAAAA+TGG - chr6_4:12004590-12004609 Msa0977320:five_prime_UTR 25.0%
!!! TTAAAGGTGTGACATTTTTT+AGG - chr6_4:12004655-12004674 Msa0977320:five_prime_UTR 25.0%
! AAGGAAGAAATGAACTTAAA+TGG - chr6_4:12004753-12004772 Msa0977320:five_prime_UTR 25.0%
! TTTACAATGATTGTGTTCAT+TGG - chr6_4:12004946-12004965 Msa0977320:five_prime_UTR 25.0%
! GAATGTCTTGATTATCATAT+TGG - chr6_4:12005280-12005299 Msa0977320:five_prime_UTR 25.0%
ATATAAGTTGTCCCTAATTC+AGG + chr6_4:12002325-12002344 None:intergenic 30.0%
GTGTAAACAATCATGTATAC+AGG + chr6_4:12002485-12002504 None:intergenic 30.0%
! CAATTTTCATTGACCCTTTA+TGG + chr6_4:12002742-12002761 None:intergenic 30.0%
AAACCAATGAGATTCTCAAT+GGG - chr6_4:12003067-12003086 Msa0977320:CDS 30.0%
! TGGTACAAGAAAAACACTTT+TGG + chr6_4:12003115-12003134 None:intergenic 30.0%
GTGTTTCTCATAAGAATAAG+AGG + chr6_4:12003162-12003181 None:intergenic 30.0%
! GGAAAGAAAATGGTTTTTGT+TGG - chr6_4:12003444-12003463 Msa0977320:intron 30.0%
! TTTTTGTTGGAGATTCTGTT+GGG - chr6_4:12003457-12003476 Msa0977320:intron 30.0%
GATCATTACTTACTTGACTT+AGG + chr6_4:12003512-12003531 None:intergenic 30.0%
TCCATCAAAGATTAGGATAA+AGG - chr6_4:12003646-12003665 Msa0977320:intron 30.0%
ACCTTTATCCTAATCTTTGA+TGG + chr6_4:12003650-12003669 None:intergenic 30.0%
!! TTTTCGTCAATGATTTGTGA+TGG - chr6_4:12003712-12003731 Msa0977320:intron 30.0%
AAGAAGATGGATACAATCAA+GGG + chr6_4:12003831-12003850 None:intergenic 30.0%
TAAGAAGATGGATACAATCA+AGG + chr6_4:12003832-12003851 None:intergenic 30.0%
AATCCAACTTAGTGAATGTT+TGG - chr6_4:12003918-12003937 Msa0977320:CDS 30.0%
AAACCAAACATTCACTAAGT+TGG + chr6_4:12003924-12003943 None:intergenic 30.0%
!! GAATGTTTGGTTTCACATTT+TGG - chr6_4:12003931-12003950 Msa0977320:CDS 30.0%
CAAGTTAGAATCAATTCTAG+AGG + chr6_4:12004031-12004050 None:intergenic 30.0%
TCTAACTTGAAGCTAGAATT+CGG - chr6_4:12004042-12004061 Msa0977320:CDS 30.0%
ATTTAGTCTCAAATTTACCG+TGG - chr6_4:12004085-12004104 Msa0977320:CDS 30.0%
AAATGAAAAAGTGAGTTCCA+CGG + chr6_4:12004105-12004124 None:intergenic 30.0%
TATTTATGAGAAACATCCTC+GGG + chr6_4:12004270-12004289 None:intergenic 30.0%
GTATTTATGAGAAACATCCT+CGG + chr6_4:12004271-12004290 None:intergenic 30.0%
! ACCATATTTTGTGAGATCAA+AGG - chr6_4:12004362-12004381 Msa0977320:five_prime_UTR 30.0%
TCCTTTGATCTCACAAAATA+TGG + chr6_4:12004366-12004385 None:intergenic 30.0%
TATAAAAAGGGTCAACTTGT+TGG - chr6_4:12004528-12004547 Msa0977320:five_prime_UTR 30.0%
ATGGTTACAAAATGGCATTT+AGG - chr6_4:12004598-12004617 Msa0977320:five_prime_UTR 30.0%
TTCATTTCTTCCTTGCTAAA+TGG + chr6_4:12004747-12004766 None:intergenic 30.0%
! TGAATTTAAAGTAGCACAAG+AGG - chr6_4:12004809-12004828 Msa0977320:five_prime_UTR 30.0%
TAGCATGTCCATAGTTATTA+GGG + chr6_4:12004908-12004927 None:intergenic 30.0%
ATAGCATGTCCATAGTTATT+AGG + chr6_4:12004909-12004928 None:intergenic 30.0%
TAATAACTATGGACATGCTA+TGG - chr6_4:12004908-12004927 Msa0977320:five_prime_UTR 30.0%
GTACAAAATCACACATCTTA+TGG - chr6_4:12005023-12005042 Msa0977320:five_prime_UTR 30.0%
TTTGTATTTACACAAAGGGT+AGG - chr6_4:12005153-12005172 Msa0977320:five_prime_UTR 30.0%
TTGTATTTACACAAAGGGTA+GGG - chr6_4:12005154-12005173 Msa0977320:five_prime_UTR 30.0%
! TGGTTGATTAGATTCGGTTA+AGG - chr6_4:12002281-12002300 Msa0977320:three_prime_UTR 35.0%
GATCAATGATCGTTATAGTC+AGG + chr6_4:12002354-12002373 None:intergenic 35.0%
!! CTCATTGGTTTGAAACTTCA+TGG + chr6_4:12003058-12003077 None:intergenic 35.0%
CAAACCAATGAGATTCTCAA+TGG - chr6_4:12003066-12003085 Msa0977320:CDS 35.0%
ATGATGAGAAGAAGAGTGAA+TGG + chr6_4:12003135-12003154 None:intergenic 35.0%
TGTTTGACAGAAGACATGTT+TGG + chr6_4:12003198-12003217 None:intergenic 35.0%
! AAAGGATGTGACATCTTTTC+TGG - chr6_4:12003240-12003259 Msa0977320:intron 35.0%
!! GTGACATCTTTTCTGGTAAT+TGG - chr6_4:12003247-12003266 Msa0977320:intron 35.0%
AATTGGATTCCTCATTCTGA+AGG - chr6_4:12003264-12003283 Msa0977320:intron 35.0%
GAACAAAACTGCATGAAGTT+TGG - chr6_4:12003327-12003346 Msa0977320:intron 35.0%
AAAACTGCATGAAGTTTGGT+AGG - chr6_4:12003331-12003350 Msa0977320:intron 35.0%
!! CAATTCTTAGAGCTTGTTAG+AGG - chr6_4:12003423-12003442 Msa0977320:intron 35.0%
! GCTTGTTAGAGGAAAGAAAA+TGG - chr6_4:12003434-12003453 Msa0977320:intron 35.0%
! GTTTTTGTTGGAGATTCTGT+TGG - chr6_4:12003456-12003475 Msa0977320:intron 35.0%
CATTACTTACTTGACTTAGG+AGG + chr6_4:12003509-12003528 None:intergenic 35.0%
GATTGCATTCCTAGATAATG+CGG + chr6_4:12003767-12003786 None:intergenic 35.0%
ATTATCTAGGAATGCAATCG+TGG - chr6_4:12003768-12003787 Msa0977320:intron 35.0%
AGGGAACAAGGATAAAAACA+AGG + chr6_4:12003807-12003826 None:intergenic 35.0%
!! TGTTTGGTTTCACATTTTGG+AGG - chr6_4:12003934-12003953 Msa0977320:CDS 35.0%
! GGTTATCTGGTGTCAAAAAT+TGG + chr6_4:12004202-12004221 None:intergenic 35.0%
CATAAGCATGTTTGGTTATC+TGG + chr6_4:12004215-12004234 None:intergenic 35.0%
ATTTCACCCTTGGAAATCTA+TGG - chr6_4:12004337-12004356 Msa0977320:five_prime_UTR 35.0%
TCAAAGGATGCAGACAAAAA+TGG - chr6_4:12004378-12004397 Msa0977320:five_prime_UTR 35.0%
ACAGATCTTGCTCACTATTA+TGG - chr6_4:12004579-12004598 Msa0977320:five_prime_UTR 35.0%
!! TCTCCATCACATTTTGAGAA+TGG - chr6_4:12004684-12004703 Msa0977320:five_prime_UTR 35.0%
TCTCCATTCTCAAAATGTGA+TGG + chr6_4:12004690-12004709 None:intergenic 35.0%
!! CACATTTTGAGAATGGAGAT+TGG - chr6_4:12004691-12004710 Msa0977320:five_prime_UTR 35.0%
ATTATGTTGTTGAGACCTGA+TGG - chr6_4:12004879-12004898 Msa0977320:five_prime_UTR 35.0%
AACTCATTCCATGTATCAAC+AGG + chr6_4:12004984-12005003 None:intergenic 35.0%
TGTATTTACACAAAGGGTAG+GGG - chr6_4:12005155-12005174 Msa0977320:five_prime_UTR 35.0%
GAGCTATGGTTGAGGATTTA+AGG + chr6_4:12002136-12002155 None:intergenic 40.0%
ATGAAGCCAATGAAGAGCTA+TGG + chr6_4:12002150-12002169 None:intergenic 40.0%
! TAATTTGAAGTTCGGACGAG+AGG + chr6_4:12002389-12002408 None:intergenic 40.0%
AATGCTATTACACCTCCTCA+CGG + chr6_4:12002455-12002474 None:intergenic 40.0%
!! AATTGGCTTGCAGCCATAAA+GGG - chr6_4:12002726-12002745 Msa0977320:CDS 40.0%
CTTCCCATTGAGAATCTCAT+TGG + chr6_4:12003073-12003092 None:intergenic 40.0%
! ACAGAAGACATGTTTGGTGA+TGG + chr6_4:12003192-12003211 None:intergenic 40.0%
TAGTAAGGTCCTTCAGAATG+AGG + chr6_4:12003276-12003295 None:intergenic 40.0%
ATGAGTATCTTCGTTGGAGA+TGG - chr6_4:12003361-12003380 Msa0977320:intron 40.0%
AACGGAAGATCGCATTCATT+TGG + chr6_4:12003390-12003409 None:intergenic 40.0%
TGTGATTCTCCGCATTATCT+AGG - chr6_4:12003755-12003774 Msa0977320:intron 40.0%
GATGGATACAATCAAGGGAA+GGG + chr6_4:12003826-12003845 None:intergenic 40.0%
AGATGGATACAATCAAGGGA+AGG + chr6_4:12003827-12003846 None:intergenic 40.0%
!! TGTTGATGATGTTGTCTGCA+TGG - chr6_4:12003885-12003904 Msa0977320:CDS 40.0%
!! TTGGTTTCACATTTTGGAGG+AGG - chr6_4:12003937-12003956 Msa0977320:CDS 40.0%
! GGAGGAAAAATTGACTCTAG+AGG - chr6_4:12003955-12003974 Msa0977320:CDS 40.0%
TCGGATTACAATTTCACCCT+TGG - chr6_4:12004327-12004346 Msa0977320:exon 40.0%
TGGTGACCATAGATTTCCAA+GGG + chr6_4:12004346-12004365 None:intergenic 40.0%
ATGGTGACCATAGATTTCCA+AGG + chr6_4:12004347-12004366 None:intergenic 40.0%
TAGATGAGGTAGATGAAGCA+TGG - chr6_4:12004433-12004452 Msa0977320:five_prime_UTR 40.0%
CTTGTTGGATGCAACAAATG+TGG - chr6_4:12004543-12004562 Msa0977320:five_prime_UTR 40.0%
TGGATGCAACAAATGTGGAA+TGG - chr6_4:12004548-12004567 Msa0977320:five_prime_UTR 40.0%
GAGAATGGAGATTGGAACAA+AGG - chr6_4:12004699-12004718 Msa0977320:five_prime_UTR 40.0%
AATGGAGATTGGAACAAAGG+AGG - chr6_4:12004702-12004721 Msa0977320:five_prime_UTR 40.0%
ATGGAGATTGGAACAAAGGA+GGG - chr6_4:12004703-12004722 Msa0977320:five_prime_UTR 40.0%
GAGGACAAAACCATTTAGCA+AGG - chr6_4:12004734-12004753 Msa0977320:five_prime_UTR 40.0%
!! CAAGAGGAAGCATCAAAGAA+AGG - chr6_4:12004825-12004844 Msa0977320:five_prime_UTR 40.0%
! TAGTTATTAGGGTGTCCATC+AGG + chr6_4:12004897-12004916 None:intergenic 40.0%
GATGGACACCCTAATAACTA+TGG - chr6_4:12004897-12004916 Msa0977320:five_prime_UTR 40.0%
! TGTGTTCATTGGTGTTTACC+TGG - chr6_4:12004957-12004976 Msa0977320:five_prime_UTR 40.0%
CCAATGAAGAGCTATGGTTG+AGG + chr6_4:12002144-12002163 None:intergenic 45.0%
CCTCAACCATAGCTCTTCAT+TGG - chr6_4:12002141-12002160 Msa0977320:three_prime_UTR 45.0%
!! GAATTGGCTTGCAGCCATAA+AGG - chr6_4:12002725-12002744 Msa0977320:CDS 45.0%
CAACGAAGATACTCATCGTC+CGG + chr6_4:12003357-12003376 None:intergenic 45.0%
AAACTTTGATGTCACGGCTC+AGG + chr6_4:12003685-12003704 None:intergenic 45.0%
ACAATCAAGGGAAGGGAACA+AGG + chr6_4:12003819-12003838 None:intergenic 45.0%
GACATAGTGATCATCTCAGC+AGG - chr6_4:12004477-12004496 Msa0977320:five_prime_UTR 45.0%
TGATCATCTCAGCAGGACAT+TGG - chr6_4:12004484-12004503 Msa0977320:five_prime_UTR 45.0%
ACAAAGGAGGGAATTGTGTG+AGG - chr6_4:12004715-12004734 Msa0977320:five_prime_UTR 45.0%
TACCTGGACCTGTTGATACA+TGG - chr6_4:12004973-12004992 Msa0977320:five_prime_UTR 45.0%
TTCCATGTATCAACAGGTCC+AGG + chr6_4:12004978-12004997 None:intergenic 45.0%
!! GAAAAAAAAAAAAAAAAAAA+AGG + chr6_4:12002795-12002814 None:intergenic 5.0%
TCGGTTAAGGACGAATCGCT+CGG - chr6_4:12002294-12002313 Msa0977320:three_prime_UTR 50.0%
GCTCGGGAGAACCTGAATTA+GGG - chr6_4:12002311-12002330 Msa0977320:exon 50.0%
TGGCTACGACGCTTACTTCT+GGG + chr6_4:12002424-12002443 None:intergenic 50.0%
TTGGCTACGACGCTTACTTC+TGG + chr6_4:12002425-12002444 None:intergenic 50.0%
CTGCATGAAGTTTGGTAGGC+CGG - chr6_4:12003335-12003354 Msa0977320:intron 50.0%
CGGACGATGAGTATCTTCGT+TGG - chr6_4:12003355-12003374 Msa0977320:intron 50.0%
CGGTTAAGGACGAATCGCTC+GGG - chr6_4:12002295-12002314 Msa0977320:three_prime_UTR 55.0%
CGCTCGGGAGAACCTGAATT+AGG - chr6_4:12002310-12002329 Msa0977320:exon 55.0%
! GACGCTTACTTCTGGGGAAG+AGG + chr6_4:12002417-12002436 None:intergenic 55.0%
GGCTACGACGCTTACTTCTG+GGG + chr6_4:12002423-12002442 None:intergenic 55.0%
!! TTTTCAGGCGTCTCAACCCG+AGG - chr6_4:12004251-12004270 Msa0977320:CDS 55.0%
GTAGCCAAGATCGCTCCGTG+AGG - chr6_4:12002437-12002456 Msa0977320:CDS 60.0%
ACCTCCTCACGGAGCGATCT+TGG + chr6_4:12002444-12002463 None:intergenic 60.0%
TGATGTCACGGCTCAGGTCG+CGG + chr6_4:12003679-12003698 None:intergenic 60.0%
GCCAAGATCGCTCCGTGAGG+AGG - chr6_4:12002440-12002459 Msa0977320:CDS 65.0%
CACGGCTCAGGTCGCGGTCA+CGG + chr6_4:12003673-12003692 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 12002070 12005319 12002070 ID=Msa0977320;Name=Msa0977320
chr6_4 mRNA 12002070 12005319 12002070 ID=Msa0977320-mRNA-1;Parent=Msa0977320;Name=Msa0977320-mRNA-1;_AED=0.12;_eAED=0.12;_QI=987|1|1|1|1|1|2|249|424
chr6_4 exon 12002070 12003131 12002070 ID=Msa0977320-mRNA-1:exon:4260;Parent=Msa0977320-mRNA-1
chr6_4 exon 12003871 12005319 12003871 ID=Msa0977320-mRNA-1:exon:4259;Parent=Msa0977320-mRNA-1
chr6_4 five_prime_UTR 12004333 12005319 12004333 ID=Msa0977320-mRNA-1:five_prime_utr;Parent=Msa0977320-mRNA-1
chr6_4 CDS 12003871 12004332 12003871 ID=Msa0977320-mRNA-1:cds;Parent=Msa0977320-mRNA-1
chr6_4 CDS 12002319 12003131 12002319 ID=Msa0977320-mRNA-1:cds;Parent=Msa0977320-mRNA-1
chr6_4 three_prime_UTR 12002070 12002318 12002070 ID=Msa0977320-mRNA-1:three_prime_utr;Parent=Msa0977320-mRNA-1
Gene Sequence

>Msa0977320

ATGAAGTTTCAAACCAATGAGATTCTCAATGGGAAGCACACAACAAGAAAAACAACCAAAAGTGTTTTTCTTGTACCATTCACTCTTCTTCTCATCATGTTTCCTCTTATTCTTATGAGAAACACAGATGAACCATCACCAAACATGTCTTCTGTCAAACACATGAACAACAAAACAGAAACAAAAGGATGTGACATCTTTTCTGGTAATTGGATTCCTCATTCTGAAGGACCTTACTATAACAATGTAACATGCAAATGGATGATTGATGAACAAAACTGCATGAAGTTTGGTAGGCCGGACGATGAGTATCTTCGTTGGAGATGGAAACCAAATGAATGCGATCTTCCGTTGTTTAATGCAACTCAATTCTTAGAGCTTGTTAGAGGAAAGAAAATGGTTTTTGTTGGAGATTCTGTTGGGAGAAATCAGTTGCAATCTTTGTTATGCCTCCTAAGTCAAGCGTCTCAACCCGAGGATGTTTCTCATAAATACACAACAAACGTCATATATTTCAAACGGTATTTCTTTTCGGATTACAATTTCACCCTTGGAAATCTATGGTCACCATATTTTGTGAGATCAAAGGATGCAGACAAAAATGGTCATTCATACAACAGCATCATGAAATTATATGTAGATGAGGTAGATGAAGCATGGTCTAGTCAAGTTGAAAACTTTGACATAGTGATCATCTCAGCAGGACATTGGTTTTTTAGACCATTATTGTTCTATAAAAAGGGTCAACTTGTTGGATGCAACAAATGTGGAATGGAGAATGTAACAGATCTTGCTCACTATTATGGTTACAAAATGGCATTTAGGACTGCATTTAGAACCTTAACAAATCTTGAAAATTTTAAAGGTGTGACATTTTTTAGGACATTTTCTCCATCACATTTTGAGAATGGAGATTGGAACAAAGGAGGGAATTGTGTGAGGACAAAACCATTTAGCAAGGAAGAAATGAACTTAAATGGTTACATTCTAGAGACATATTTAACACAAGTGAATGAATTTAAAGTAGCACAAGAGGAAGCATCAAAGAAAGGTTTGAAATTTTTGATGCTTAATACAACTGAAATTATGTTGTTGAGACCTGATGGACACCCTAATAACTATGGACATGCTATGGTAAAAAATGTGACATTTTACAATGATTGTGTTCATTGGTGTTTACCTGGACCTGTTGATACATGGAATGAGTTTTTGCTATATATGTTGAATGTACAAAATCACACATCTTATGGTTCAAAGCTAGAGAGTGTTTTATGA
Protein sequence

>Msa0977320

MKFQTNEILNGKHTTRKTTKSVFLVPFTLLLIMFPLILMRNTDEPSPNMSSVKHMNNKTETKGCDIFSGNWIPHSEGPYYNNVTCKWMIDEQNCMKFGRPDDEYLRWRWKPNECDLPLFNATQFLELVRGKKMVFVGDSVGRNQLQSLLCLLSQASQPEDVSHKYTTNVIYFKRYFFSDYNFTLGNLWSPYFVRSKDADKNGHSYNSIMKLYVDEVDEAWSSQVENFDIVIISAGHWFFRPLLFYKKGQLVGCNKCGMENVTDLAHYYGYKMAFRTAFRTLTNLENFKGVTFFRTFSPSHFENGDWNKGGNCVRTKPFSKEEMNLNGYILETYLTQVNEFKVAQEEASKKGLKFLMLNTTEIMLLRPDGHPNNYGHAMVKNVTFYNDCVHWCLPGPVDTWNEFLLYMLNVQNHTSYGSKLESVL*