AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105210 MtrunA17_Chr1g0160041 98.135 697 12 1 1 697 1 696 0.0 1401
Msa0105210 MtrunA17_Chr3g0124631 73.571 700 178 3 1 696 1 697 0.0 1066
Msa0105210 MtrunA17_Chr3g0120731 62.787 696 252 4 5 696 35 727 0.0 897
Msa0105210 MtrunA17_Chr1g0205711 34.361 649 374 11 57 696 80 685 1.43e-116 365
Msa0105210 MtrunA17_Chr1g0194371 33.849 647 380 14 62 697 46 655 3.61e-106 337
Msa0105210 MtrunA17_Chr5g0396691 33.384 653 386 15 56 697 42 656 9.52e-101 323
Msa0105210 MtrunA17_Chr5g0396711 32.925 653 389 15 56 697 42 656 5.02e-98 316
Msa0105210 MtrunA17_Chr4g0034181 32.290 607 368 14 104 695 73 651 6.89e-97 313
Msa0105210 MtrunA17_Chr7g0270221 32.353 646 343 15 57 688 41 606 1.37e-94 306
Msa0105210 MtrunA17_Chr8g0388081 31.639 610 374 11 104 697 13 595 1.76e-94 304
Msa0105210 MtrunA17_Chr1g0162621 31.260 611 370 15 104 695 74 653 3.46e-88 290
Msa0105210 MtrunA17_Chr3g0121931 26.000 650 381 16 109 695 107 719 2.62e-45 172
Msa0105210 MtrunA17_Chr3g0121951 26.121 647 381 22 109 695 105 714 3.97e-41 160
Msa0105210 MtrunA17_Chr8g0377991 25.545 642 396 17 109 695 109 723 4.12e-37 148
Msa0105210 MtrunA17_Chr5g0409791 26.680 491 254 23 118 582 78 488 1.44e-23 105
Msa0105210 MtrunA17_Chr4g0039791 30.058 346 160 15 251 582 204 481 2.05e-23 105
Msa0105210 MtrunA17_Chr5g0409771 28.571 350 170 16 251 587 198 480 2.21e-21 98.6
Msa0105210 MtrunA17_Chr4g0072561 24.602 565 331 16 107 651 57 546 2.57e-19 92.0
Msa0105210 MtrunA17_Chr1g0157401 27.647 340 178 13 251 584 205 482 2.73e-18 89.0
Msa0105210 MtrunA17_Chr8g0353341 26.197 355 191 11 235 584 197 485 4.37e-17 85.1
Msa0105210 MtrunA17_Chr6g0471921 25.872 344 187 10 240 579 153 432 5.37e-16 81.6
Msa0105210 MtrunA17_Chr5g0433231 34.161 161 89 5 444 593 322 476 3.96e-14 75.9
Msa0105210 MtrunA17_Chr5g0395431 33.143 175 91 8 422 584 349 509 5.83e-14 75.5
Msa0105210 MtrunA17_Chr4g0028411 30.374 214 123 9 422 620 307 509 8.58e-14 74.7
Msa0105210 MtrunA17_Chr2g0327341 31.977 172 94 9 422 584 304 461 1.08e-13 74.3
Msa0105210 MtrunA17_Chr1g0180541 27.778 216 128 9 422 620 311 515 1.38e-13 73.9
Msa0105210 MtrunA17_Chr5g0433241 48.193 83 37 3 503 585 391 467 2.63e-12 70.1
Msa0105210 MtrunA17_Chr1g0180551 31.707 164 99 6 428 586 390 545 2.68e-12 70.1
Msa0105210 MtrunA17_Chr5g0433221 40.952 105 56 3 489 593 378 476 1.05e-11 68.2
Msa0105210 MtrunA17_Chr6g0471311 34.161 161 89 6 444 593 324 478 1.08e-11 68.2
Msa0105210 MtrunA17_Chr3g0109731 32.948 173 94 6 425 584 306 469 1.10e-11 68.2
Msa0105210 MtrunA17_Chr3g0116271 35.570 149 80 7 422 564 323 461 1.19e-11 67.8
Msa0105210 MtrunA17_Chr1g0197391 29.341 167 106 6 422 584 330 488 4.24e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105210 AT1G77590.1 72.166 697 187 4 1 696 1 691 0.0 1056
Msa0105210 AT1G77590.2 78.976 547 112 1 150 696 2 545 0.0 914
Msa0105210 AT2G04350.2 62.555 681 247 5 20 696 44 720 0.0 879
Msa0105210 AT2G04350.1 62.555 681 247 5 20 696 44 720 0.0 879
Msa0105210 AT5G27600.1 34.776 647 374 13 57 696 83 688 1.33e-122 381
Msa0105210 AT3G05970.1 35.039 645 373 12 57 695 83 687 3.19e-115 362
Msa0105210 AT2G47240.1 32.579 663 383 15 48 695 39 652 4.53e-97 313
Msa0105210 AT2G47240.2 32.579 663 383 15 48 695 39 652 4.53e-97 313
Msa0105210 AT2G47240.3 32.579 663 383 15 48 695 39 652 4.53e-97 313
Msa0105210 AT4G11030.1 31.194 670 406 15 40 697 31 657 1.65e-96 312
Msa0105210 AT2G47240.4 33.333 609 365 12 102 695 11 593 2.45e-96 310
Msa0105210 AT1G49430.1 31.279 649 393 14 62 696 49 658 3.46e-95 308
Msa0105210 AT4G23850.1 31.729 665 397 16 46 697 37 657 1.23e-94 307
Msa0105210 AT1G64400.1 31.788 604 377 12 104 695 75 655 1.14e-93 305
Msa0105210 AT1G49430.2 30.832 493 288 14 62 540 49 502 1.02e-62 218
Msa0105210 AT3G23790.1 26.521 641 387 20 109 695 111 721 4.39e-44 169
Msa0105210 AT4G14070.1 25.077 646 381 18 109 696 127 727 1.23e-41 162
Msa0105210 AT4G19010.1 31.186 388 186 19 251 620 205 529 2.69e-28 120
Msa0105210 AT1G20500.1 26.329 414 220 15 251 644 198 546 2.23e-21 99.0
Msa0105210 AT1G20510.1 28.401 419 204 18 229 620 162 511 3.18e-20 95.5
Msa0105210 AT1G20510.2 28.989 376 180 16 229 586 162 468 3.33e-19 91.7
Msa0105210 AT1G65060.1 24.691 486 269 17 110 579 77 481 6.58e-19 91.3
Msa0105210 AT1G65060.2 24.628 471 259 17 110 564 77 467 2.12e-18 89.4
Msa0105210 AT1G20510.3 29.096 354 165 15 229 564 162 447 1.37e-17 86.7
Msa0105210 AT1G51680.1 24.150 559 317 23 120 649 77 557 3.39e-17 85.9
Msa0105210 AT5G16370.1 29.508 366 158 14 251 593 186 474 5.99e-17 85.1
Msa0105210 AT1G51680.3 27.363 402 202 19 207 591 162 490 2.00e-16 83.6
Msa0105210 AT1G51680.2 27.363 402 202 19 207 591 162 490 2.97e-16 82.8
Msa0105210 AT4G05160.1 28.226 248 139 11 422 645 309 541 7.70e-16 81.6
Msa0105210 AT5G16340.1 29.014 355 174 13 251 593 186 474 1.49e-15 80.9
Msa0105210 AT1G75960.1 34.715 193 95 7 418 593 296 474 5.20e-14 75.9
Msa0105210 AT1G21540.1 34.161 161 90 5 444 593 322 477 8.07e-14 75.1
Msa0105210 AT3G48990.1 32.335 167 99 5 421 584 281 436 8.87e-14 75.1
Msa0105210 AT1G20480.1 30.769 208 124 8 425 620 333 532 4.13e-13 73.2
Msa0105210 AT1G77240.1 45.055 91 45 2 503 593 390 475 5.15e-13 72.8
Msa0105210 AT3G21230.1 26.749 243 156 8 422 650 331 565 1.07e-12 71.6
Msa0105210 AT3G21240.1 27.309 249 146 11 422 649 316 550 1.52e-12 71.2
Msa0105210 AT1G21530.1 41.758 91 48 2 503 593 387 472 2.80e-12 70.5
Msa0105210 AT1G21530.2 41.758 91 48 2 503 593 389 474 2.83e-12 70.5
Msa0105210 AT3G21240.2 30.769 182 100 9 422 591 316 483 1.63e-11 67.8
Msa0105210 AT3G21240.3 30.769 182 100 9 422 591 316 483 1.63e-11 67.8
Msa0105210 AT3G21230.3 30.588 170 105 6 422 586 331 492 1.84e-11 67.8
Msa0105210 AT3G21230.2 30.588 170 105 6 422 586 331 492 2.22e-11 67.4

Find 202 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAGGCTAACTACTTATT+TGG 0.141356 1_3:-13561180 Msa0105210:exon
TCTGGCGGTGCTCCCCTTTC+TGG 0.196224 1_3:-13564831 Msa0105210:CDS
TCTTCCTTGCTCATTTATTA+AGG 0.207102 1_3:-13563701 Msa0105210:intron
TGTTCCCAAACTTGAGAAAA+AGG 0.223387 1_3:-13565807 Msa0105210:CDS
TGAATGGTTCCTTGCTCTTC+AGG 0.232308 1_3:-13568033 Msa0105210:intron
TTCTGCTTCAGGGTTGTTTC+AGG 0.236650 1_3:-13566801 Msa0105210:intron
TGTGTTGATGCCAACTTTAT+TGG 0.245256 1_3:-13565506 Msa0105210:CDS
ACTGGAACTCCGCGGCGTTT+GGG 0.248573 1_3:+13568398 None:intergenic
TACTGGAACTCCGCGGCGTT+TGG 0.256830 1_3:+13568397 None:intergenic
AATCAAGGAATTCCTTATTC+AGG 0.263628 1_3:-13561967 Msa0105210:CDS
AAATTCATGCATCAAATAAC+AGG 0.274932 1_3:-13561092 Msa0105210:three_prime_UTR
GGGGATTGGAGAAGGCTCTC+TGG 0.278772 1_3:-13564914 Msa0105210:CDS
AGGAGGTTGAAAGCAGTTAA+TGG 0.295468 1_3:-13564954 Msa0105210:CDS
TGATCGTCCGCGGAGTTTAC+TGG 0.297128 1_3:+13568380 None:intergenic
GAAGAAGTTACTCAGAAAAT+TGG 0.300791 1_3:+13568522 None:intergenic
AGAAATCATTGATCGTAAAA+AGG 0.325053 1_3:-13562674 Msa0105210:CDS
AGACCATATCCTTGACCTAT+TGG 0.336719 1_3:+13563793 None:intergenic
TACTCAGAAAATTGGTGTTT+TGG 0.339274 1_3:+13568530 None:intergenic
TGCTAGTGGTTTGGCTGTGT+TGG 0.348285 1_3:-13568102 Msa0105210:CDS
GCAGTTAATGGAAGCTGGTT+TGG 0.349164 1_3:-13564942 Msa0105210:CDS
TTAGTTAAATATCCACCTTC+AGG 0.376720 1_3:+13563184 None:intergenic
GGGATTGGAGAAGGCTCTCT+GGG 0.383295 1_3:-13564913 Msa0105210:CDS
ATGGAAGCTGGTTTGGAGCC+TGG 0.384214 1_3:-13564935 Msa0105210:CDS
ATGGAAAGGATGAGAGGGTT+GGG 0.386145 1_3:-13568076 Msa0105210:CDS
GTTGGGATACCTATAGGATA+TGG 0.388445 1_3:-13565592 Msa0105210:CDS
CCTCGTGGAGAAATTGTAAT+TGG 0.388867 1_3:-13563148 Msa0105210:CDS
TGTAACGATGTATGCATCAT+TGG 0.392960 1_3:-13566764 Msa0105210:CDS
ATAACTTCAGAAGATCTTCC+TGG 0.394589 1_3:+13561208 None:intergenic
TCTGAAGTTATACGCTTCAT+AGG 0.395208 1_3:-13561196 Msa0105210:exon
TGCGGCTAGGTTGATGAAAA+AGG 0.395377 1_3:-13562751 Msa0105210:intron
GATCCATGGACACCTGAGTC+TGG 0.398942 1_3:-13561282 Msa0105210:CDS
CTCAGTCCACATTGGAAGAA+TGG 0.398978 1_3:-13561996 Msa0105210:CDS
GCTAGTGGTTTGGCTGTGTT+GGG 0.401073 1_3:-13568101 Msa0105210:CDS
TATTTGGATGTATCTATTGA+GGG 0.403223 1_3:-13561164 Msa0105210:three_prime_UTR
TGGAAGCTGGTTTGGAGCCT+GGG 0.403407 1_3:-13564934 Msa0105210:CDS
GGAAGCAAAGAAAGCTCGTT+TGG 0.403415 1_3:-13561343 Msa0105210:CDS
TGGGGTGGTTAGTGCGGAAC+AGG 0.408992 1_3:+13568417 None:intergenic
TTAAATTGCTTTCTGATCCA+TGG 0.411441 1_3:-13561296 Msa0105210:CDS
CAAGTGCCACACAGTAACTA+TGG 0.413049 1_3:+13562028 None:intergenic
GCATGGAGAGTATGTTTCCT+TGG 0.413823 1_3:-13562635 Msa0105210:CDS
TTATTTGGATGTATCTATTG+AGG 0.418393 1_3:-13561165 Msa0105210:three_prime_UTR
CTGCTGAGTATCACCAGAAA+GGG 0.422987 1_3:+13564818 None:intergenic
TCAGTCCACATTGGAAGAAT+GGG 0.429822 1_3:-13561995 Msa0105210:CDS
AGTGGTTGTTTCGAAGGAAA+TGG 0.431521 1_3:-13568225 Msa0105210:CDS
CTGGTTTGGAGCCTGGGGAT+TGG 0.432080 1_3:-13564928 Msa0105210:CDS
TGGAGCCTGGGGATTGGAGA+AGG 0.435820 1_3:-13564922 Msa0105210:CDS
TGTTAGGTTTGCTAGTGGTT+TGG 0.437204 1_3:-13568111 Msa0105210:CDS
AACATTATATTGTCCACATA+GGG 0.443303 1_3:+13562066 None:intergenic
ATGATAACTGCAACATCAGC+TGG 0.443496 1_3:+13566369 None:intergenic
ATACCTCAGCTGCTAGTTCA+AGG 0.446682 1_3:+13565750 None:intergenic
AAGATTAAGAAAGGAACAAA+GGG 0.448860 1_3:-13565538 Msa0105210:CDS
TTGCTGATACTAGGGTTGAA+TGG 0.455217 1_3:-13568049 Msa0105210:CDS
GGCCGTCAGAAAGACTTTCC+AGG 0.457546 1_3:-13561226 Msa0105210:CDS
CGCATCCGTTTCATACTGTC+TGG 0.460106 1_3:-13564849 Msa0105210:CDS
AAAGGAGATCCATATCCTAT+AGG 0.461389 1_3:+13565583 None:intergenic
CATGGAAAGGATGAGAGGGT+TGG 0.461442 1_3:-13568077 Msa0105210:CDS
CATGGAGAGTATGTTTCCTT+GGG 0.466180 1_3:-13562634 Msa0105210:CDS
TGCTTTCAACCTCCTCTCAT+AGG 0.467574 1_3:+13564962 None:intergenic
CCTCATCTGTTGGACACGGC+TGG 0.471706 1_3:-13566461 Msa0105210:CDS
GCAGCAGTTGGGATACCTAT+AGG 0.472722 1_3:-13565598 Msa0105210:CDS
ATGTATACAAGTGGAAGTAC+TGG 0.474903 1_3:-13566348 Msa0105210:CDS
CAGTTCATCAATATCTGTCT+TGG 0.475583 1_3:-13564798 Msa0105210:CDS
AGAGGTAAATCAGCATCAAC+AGG 0.476714 1_3:+13566393 None:intergenic
CCATCTGATGCCTCATCTGT+TGG 0.477457 1_3:-13566471 Msa0105210:CDS
ACAATTTCTCCACGAGGCAT+TGG 0.478544 1_3:+13563154 None:intergenic
AAGTAACCAAGAGTGACATT+TGG 0.478964 1_3:+13563121 None:intergenic
CTTCGCCGGTGGAGACGGCA+TGG 0.479046 1_3:-13568325 Msa0105210:CDS
TGAAAGCAGTTAATGGAAGC+TGG 0.480204 1_3:-13564947 Msa0105210:CDS
CTGGAACTCCGCGGCGTTTG+GGG 0.481924 1_3:+13568399 None:intergenic
GAAGAATGGGCTTCAAATCA+AGG 0.482234 1_3:-13561982 Msa0105210:CDS
AACAGGAGAGTTGCGAGGAT+GGG 0.487307 1_3:+13568434 None:intergenic
TAGAATTTGATGGCAGCAGT+TGG 0.491226 1_3:-13565610 Msa0105210:CDS
CCAATGTAGGTGAATGCAAC+GGG 0.492645 1_3:-13565014 Msa0105210:intron
TTGAATTGGGTGAGTATGAA+TGG 0.493545 1_3:-13568163 Msa0105210:CDS
AAAACACTTGTAAATATTAG+CGG 0.496596 1_3:-13566540 Msa0105210:CDS
GAACAGGAGAGTTGCGAGGA+TGG 0.496821 1_3:+13568433 None:intergenic
CAACATTATATTGTCCACAT+AGG 0.498047 1_3:+13562065 None:intergenic
GGTGGTCCAAATGTCACTCT+TGG 0.500524 1_3:-13563127 Msa0105210:CDS
TGGTTCTACACTGGTGACAT+AGG 0.500937 1_3:-13562721 Msa0105210:CDS
TTTATGTCACTCATTGAATG+AGG 0.503431 1_3:-13566731 Msa0105210:intron
GTAACGATGTATGCATCATT+GGG 0.503568 1_3:-13566763 Msa0105210:CDS
TTACTGTGTGGCACTTGTTG+TGG 0.503677 1_3:-13562022 Msa0105210:CDS
GAGTATGATGGTGACAATGT+AGG 0.503858 1_3:+13568457 None:intergenic
TTAATAAATGAGCAAGGAAG+AGG 0.507013 1_3:+13563703 None:intergenic
GATGTATCTGTGAGGGTCAA+AGG 0.507460 1_3:+13565565 None:intergenic
GTCATTTCCAGTGCTCCAAT+AGG 0.507815 1_3:-13563808 Msa0105210:intron
ATTTGCTTCGCCGGTGGAGA+CGG 0.509942 1_3:-13568330 Msa0105210:CDS
ATGGAGAAGAGTGGTGGTGA+TGG 0.510454 1_3:-13568206 Msa0105210:CDS
GCTCCAATAGGTCAAGGATA+TGG 0.512887 1_3:-13563796 Msa0105210:CDS
AGTATGATGGTGACAATGTA+GGG 0.514432 1_3:+13568458 None:intergenic
AGTTCATCAATATCTGTCTT+GGG 0.515096 1_3:-13564797 Msa0105210:intron
TTTGCAGATGTTAAGCGACT+TGG 0.516699 1_3:-13566426 Msa0105210:CDS
ACAGGAGAGTTGCGAGGATG+GGG 0.517085 1_3:+13568435 None:intergenic
GGCTGTGTTGGGACATGGAA+AGG 0.517980 1_3:-13568090 Msa0105210:CDS
CCTTCCCATGCCGTCTCCAC+CGG 0.522400 1_3:+13568320 None:intergenic
AACAAGAGTGGTTGTTTCGA+AGG 0.522687 1_3:-13568231 Msa0105210:CDS
CGAACACGGTCAAGAATTGC+TGG 0.522952 1_3:+13565475 None:intergenic
AGAATTTGATGGCAGCAGTT+GGG 0.524314 1_3:-13565609 Msa0105210:CDS
CTTTAATTAATCATCTGTGA+TGG 0.528944 1_3:+13561035 None:intergenic
GAGAAGAGTGGTGGTGATGG+TGG 0.532291 1_3:-13568203 Msa0105210:CDS
AAGCCAGACTCAGGTGTCCA+TGG 0.533358 1_3:+13561279 None:intergenic
ACATCAAGCAAGATTAAGAA+AGG 0.535370 1_3:-13565547 Msa0105210:CDS
GTAAACTCCGCGGACGATCA+AGG 0.536566 1_3:-13568377 Msa0105210:CDS
GGTTTGGCTGTGTTGGGACA+TGG 0.539640 1_3:-13568095 Msa0105210:CDS
CCAACAGATGAGGCATCAGA+TGG 0.541242 1_3:+13566471 None:intergenic
CGTGGAGAAATTGTAATTGG+TGG 0.547343 1_3:-13563145 Msa0105210:CDS
ATAGGGAGGTTTCATCAAGA+TGG 0.548115 1_3:-13562703 Msa0105210:CDS
GATACATCTGTTGGCCGTGT+TGG 0.550940 1_3:-13563730 Msa0105210:CDS
AGAGTATGTTTCCTTGGGAA+AGG 0.550970 1_3:-13562629 Msa0105210:intron
GCATACGGAGAGATTACTGT+TGG 0.551893 1_3:-13568255 Msa0105210:CDS
AATTGTTTGAAGAAGCATGC+AGG 0.551968 1_3:-13568280 Msa0105210:CDS
GGCGTTTGGGGTGGTTAGTG+CGG 0.552010 1_3:+13568411 None:intergenic
GGTACAGCAGCCAATAAAGT+TGG 0.552940 1_3:+13565496 None:intergenic
GAGAGCCTTCTCCAATCCCC+AGG 0.553126 1_3:+13564917 None:intergenic
CCACACAGTAACTATGGAAA+GGG 0.553679 1_3:+13562034 None:intergenic
CAAGATTAAGAAAGGAACAA+AGG 0.555027 1_3:-13565539 Msa0105210:CDS
GGTGCATGCATCACTAGTAA+AGG 0.555060 1_3:-13561905 Msa0105210:intron
AGGTCACGACAGTAATTTGT+GGG 0.556939 1_3:-13566575 Msa0105210:CDS
CACCGCCAGACAGTATGAAA+CGG 0.564677 1_3:+13564844 None:intergenic
CCGGTGGAGACGGCATGGGA+AGG 0.565272 1_3:-13568320 Msa0105210:CDS
GGTTCTACACTGGTGACATA+GGG 0.565337 1_3:-13562720 Msa0105210:CDS
ACTGCTGAGTATCACCAGAA+AGG 0.570535 1_3:+13564817 None:intergenic
GAACTCCGCGGCGTTTGGGG+TGG 0.570545 1_3:+13568402 None:intergenic
ATTCTTGACCGTGTTCGCGA+TGG 0.574052 1_3:-13565469 Msa0105210:CDS
TGCGAGGATGGGGAGTATGA+TGG 0.575752 1_3:+13568445 None:intergenic
CAGAAGATTTGCTTCGCCGG+TGG 0.575937 1_3:-13568336 Msa0105210:CDS
TGGAAGTACTGGATTACCTA+AGG 0.576756 1_3:-13566337 Msa0105210:intron
TTCCTGGAAAGTCTTTCTGA+CGG 0.577666 1_3:+13561224 None:intergenic
AGTTCAAGGATATGAGCCAT+TGG 0.579034 1_3:+13565764 None:intergenic
TGAACACACCATCGCGAACA+CGG 0.581298 1_3:+13565461 None:intergenic
GCAGTGACTAAGCCAGACTC+AGG 0.581299 1_3:+13561270 None:intergenic
AGAAGCATGCAGGAAGCATA+CGG 0.584187 1_3:-13568270 Msa0105210:CDS
TAGCTAATCGACTGGCCTGA+AGG 0.584227 1_3:-13563199 Msa0105210:CDS
GCAGTTATCATGTATACAAG+TGG 0.584330 1_3:-13566357 Msa0105210:CDS
TCCAGTGCTCCAATAGGTCA+AGG 0.584850 1_3:-13563802 Msa0105210:intron
TTTACCTTAATAAATGAGCA+AGG 0.585073 1_3:+13563697 None:intergenic
TGTGGCTTCTCAGTCCACAT+TGG 0.586175 1_3:-13562004 Msa0105210:CDS
GGGACATGGAAAGGATGAGA+GGG 0.587034 1_3:-13568081 Msa0105210:CDS
ATTACTGTTGGGAACAAGAG+TGG 0.589151 1_3:-13568243 Msa0105210:CDS
GATGTATGCATCATTGGGAG+AGG 0.590579 1_3:-13566758 Msa0105210:CDS
AATTCATGCATCAAATAACA+GGG 0.591013 1_3:-13561091 Msa0105210:three_prime_UTR
TTCGCCGGTGGAGACGGCAT+GGG 0.591329 1_3:-13568324 Msa0105210:CDS
GCCAATGTAGGTGAATGCAA+CGG 0.592102 1_3:-13565015 Msa0105210:intron
GAACAGAAGATTTGCTTCGC+CGG 0.592463 1_3:-13568339 Msa0105210:CDS
GCCACACAGTAACTATGGAA+AGG 0.592809 1_3:+13562033 None:intergenic
AAAATCCGAGCAATTCTTGG+TGG 0.592932 1_3:-13564873 Msa0105210:CDS
GGAAGGTGTGAGTACATTGG+CGG 0.594382 1_3:-13568303 Msa0105210:CDS
ACTGCAACATCAGCTGGGAG+AGG 0.595197 1_3:+13566375 None:intergenic
TCGAAGGAAATGGAGAAGAG+TGG 0.595299 1_3:-13568215 Msa0105210:CDS
CTAATCGACTGGCCTGAAGG+TGG 0.598093 1_3:-13563196 Msa0105210:CDS
TCTTATTGTCAGCCCCTATG+TGG 0.599891 1_3:-13562079 Msa0105210:CDS
TGGGACATGGAAAGGATGAG+AGG 0.600615 1_3:-13568082 Msa0105210:CDS
TTAGTATCATACCTTTCCCA+AGG 0.600980 1_3:+13562618 None:intergenic
TTTATTTAGCCTATGAGAGG+AGG 0.601307 1_3:-13564971 Msa0105210:CDS
GGTCTTACAGAGACTTGTGC+TGG 0.601412 1_3:-13563775 Msa0105210:CDS
AAGTCGCTTAACATCTGCAA+AGG 0.603112 1_3:+13566428 None:intergenic
CCCTTTCCATAGTTACTGTG+TGG 0.606415 1_3:-13562034 Msa0105210:CDS
GGAAGCTGGTTTGGAGCCTG+GGG 0.608440 1_3:-13564933 Msa0105210:CDS
TGCGACCACCAAGAATTGCT+CGG 0.608998 1_3:+13564868 None:intergenic
TGCTCTCAAGCTCAAGAGAG+AGG 0.609631 1_3:-13561247 Msa0105210:CDS
TCGCGATGGTGTGTTCAAGA+AGG 0.610256 1_3:-13565455 Msa0105210:intron
TATCCTTGAACTAGCAGCTG+AGG 0.611422 1_3:-13565753 Msa0105210:intron
ATATCTAGCATACTTGCCAA+TGG 0.611559 1_3:-13565780 Msa0105210:CDS
GGAATGAGATGGTTCTACAC+TGG 0.616046 1_3:-13562730 Msa0105210:CDS
GACATTGTTAAACTGCAGCA+TGG 0.618080 1_3:-13562652 Msa0105210:CDS
CTCTAAAGAAGAAAGCATCA+AGG 0.618470 1_3:-13561929 Msa0105210:CDS
TCTACACTGGTGACATAGGG+AGG 0.620080 1_3:-13562717 Msa0105210:CDS
ATAAATGAGCAAGGAAGAGG+AGG 0.620903 1_3:+13563706 None:intergenic
GAGGTCACGACAGTAATTTG+TGG 0.621092 1_3:-13566576 Msa0105210:CDS
GGTGTTGTTAGGTTTGCTAG+TGG 0.622277 1_3:-13568116 Msa0105210:CDS
CTTACAGAGACTTGTGCTGG+TGG 0.623479 1_3:-13563772 Msa0105210:CDS
TGATAACTGCAACATCAGCT+GGG 0.625199 1_3:+13566370 None:intergenic
AAGGAAATGGAGAAGAGTGG+TGG 0.626690 1_3:-13568212 Msa0105210:CDS
ATGGGAAGGTGTGAGTACAT+TGG 0.627410 1_3:-13568306 Msa0105210:CDS
CATACGGAGAGATTACTGTT+GGG 0.628004 1_3:-13568254 Msa0105210:CDS
CTTGCTTGATGTATCTGTGA+GGG 0.628466 1_3:+13565558 None:intergenic
CAACAGATGAGGCATCAGAT+GGG 0.637208 1_3:+13566472 None:intergenic
AATGACTCGCCAATGCCTCG+TGG 0.642641 1_3:-13563163 Msa0105210:CDS
TGAAGCCCATTCTTCCAATG+TGG 0.643581 1_3:+13561990 None:intergenic
TCTTGCTTGATGTATCTGTG+AGG 0.651294 1_3:+13565557 None:intergenic
CCAGCCGTGTCCAACAGATG+AGG 0.653025 1_3:+13566461 None:intergenic
ACATTATATTGTCCACATAG+GGG 0.657865 1_3:+13562067 None:intergenic
AGTGAAACGTGTGATATGCA+TGG 0.659671 1_3:-13566505 Msa0105210:CDS
GATTACAAACCTGAAGAGCA+AGG 0.659813 1_3:+13568024 None:intergenic
GATGCCTCATCTGTTGGACA+CGG 0.661876 1_3:-13566465 Msa0105210:CDS
CACACCGCCTTGATCGTCCG+CGG 0.663810 1_3:+13568370 None:intergenic
ATCAAGGCGGTGTGACAGTG+CGG 0.666236 1_3:-13568361 Msa0105210:CDS
AAAGACAAAAGAATCATACA+AGG 0.668435 1_3:-13563086 Msa0105210:intron
AAGGAAGAGGAGGTCCAACA+CGG 0.670202 1_3:+13563716 None:intergenic
ATCCGTTTCATACTGTCTGG+CGG 0.670954 1_3:-13564846 Msa0105210:CDS
TGCTGAGTATCACCAGAAAG+GGG 0.679172 1_3:+13564819 None:intergenic
CCAATTACAATTTCTCCACG+AGG 0.687033 1_3:+13563148 None:intergenic
ATTCATGCATCAAATAACAG+GGG 0.687599 1_3:-13561090 Msa0105210:three_prime_UTR
TGCGGAACAGGAGAGTTGCG+AGG 0.692879 1_3:+13568429 None:intergenic
ATGTAGGTGAATGCAACGGG+AGG 0.694846 1_3:-13565011 Msa0105210:intron
GATTAAGAAAGGAACAAAGG+GGG 0.703898 1_3:-13565536 Msa0105210:CDS
ACTAACCACCCCAAACGCCG+CGG 0.713114 1_3:-13568407 Msa0105210:CDS
AGATTAAGAAAGGAACAAAG+GGG 0.717002 1_3:-13565537 Msa0105210:CDS
CGGAGTTTACTGGAACTCCG+CGG 0.730231 1_3:+13568390 None:intergenic
TAAAGAAGAAAGCATCAAGG+AGG 0.735856 1_3:-13561926 Msa0105210:CDS
CGGAGTTCCAGTAAACTCCG+CGG 0.771535 1_3:-13568387 Msa0105210:CDS
AACTCCGCGGACGATCAAGG+CGG 0.776940 1_3:-13568374 Msa0105210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTGTTATTATTTTCT+TGG - chr1_3:13566824-13566843 Msa0105210:intron 10.0%
!! ATAACATAAAAAAATTATCT+AGG - chr1_3:13567875-13567894 Msa0105210:intron 10.0%
!! AAATAATAATCTATCTACAT+TGG - chr1_3:13562692-13562711 Msa0105210:CDS 15.0%
!! ACTAAAATTTGTATATTGAT+AGG + chr1_3:13564832-13564851 None:intergenic 15.0%
!!! AAATTTTAGTATTTTTCGAT+TGG - chr1_3:13564842-13564861 Msa0105210:CDS 15.0%
!! GATTATTGAAAAAAAAAATG+AGG - chr1_3:13564877-13564896 Msa0105210:CDS 15.0%
!! TACAATACAATTACAATTAT+TGG - chr1_3:13565252-13565271 Msa0105210:intron 15.0%
!!! CTAAGAAATATAATAAGTTT+TGG - chr1_3:13565383-13565402 Msa0105210:intron 15.0%
!!! ATAATATTTTCCTTTACAAA+AGG + chr1_3:13565672-13565691 None:intergenic 15.0%
!!! TTATGTATATTTTTACTTTG+AGG - chr1_3:13565948-13565967 Msa0105210:intron 15.0%
!! ATAAAGAAAGATAATCAATT+AGG + chr1_3:13566341-13566360 None:intergenic 15.0%
!! AATTATCCTATATAAGATAA+TGG + chr1_3:13566371-13566390 None:intergenic 15.0%
!!! TCTCTTAAATTTAAAATCAT+TGG - chr1_3:13567116-13567135 Msa0105210:intron 15.0%
!! CTTATTAAATTTGTAGTGTT+TGG - chr1_3:13561721-13561740 Msa0105210:intron 20.0%
!! TGAATTAAATTTGTAGTGTT+TGG - chr1_3:13562102-13562121 Msa0105210:intron 20.0%
!!! TGAAATTTTTTCTTCTCAAT+TGG + chr1_3:13562346-13562365 None:intergenic 20.0%
!! ACACAATAATACTATAAAAC+AGG - chr1_3:13562427-13562446 Msa0105210:intron 20.0%
!!! TTAAATCATTTCAAGTAGTA+AGG + chr1_3:13562638-13562657 None:intergenic 20.0%
!! TTATTTATGATAAGTGTAAC+AGG + chr1_3:13562678-13562697 None:intergenic 20.0%
!!! TTATTTGTCTCTTCAATTTT+GGG + chr1_3:13562735-13562754 None:intergenic 20.0%
!!! ATTATTTGTCTCTTCAATTT+TGG + chr1_3:13562736-13562755 None:intergenic 20.0%
!! AAAACACTTGTAAATATTAG+CGG - chr1_3:13563058-13563077 Msa0105210:intron 20.0%
!! ATCAATTCAATCAATTTAGA+TGG - chr1_3:13563407-13563426 Msa0105210:intron 20.0%
!! TTTCAGTATTAGAAATTGTA+GGG + chr1_3:13563635-13563654 None:intergenic 20.0%
!! ATTTCAGTATTAGAAATTGT+AGG + chr1_3:13563636-13563655 None:intergenic 20.0%
!! TACAATTTCTAATACTGAAA+TGG - chr1_3:13563635-13563654 Msa0105210:intron 20.0%
!! AAAAGGATAAATAGAAGAAA+CGG + chr1_3:13563683-13563702 None:intergenic 20.0%
!!! AAATTTTACCATACAAGAAA+AGG + chr1_3:13563700-13563719 None:intergenic 20.0%
!!! TTTGTCATTTTGTAGATTTA+TGG - chr1_3:13564498-13564517 Msa0105210:intron 20.0%
!!! TTGTCATTTTGTAGATTTAT+GGG - chr1_3:13564499-13564518 Msa0105210:intron 20.0%
!!! GCTAAATAAAACAACTTTTT+GGG + chr1_3:13564617-13564636 None:intergenic 20.0%
!!! CTTTAATCTTGATTTCTTTT+AGG + chr1_3:13564930-13564949 None:intergenic 20.0%
!!! CTTTAATCATGATTTGTTTT+AGG + chr1_3:13565067-13565086 None:intergenic 20.0%
!! CTAAATAACATTTACAAATG+CGG + chr1_3:13565602-13565621 None:intergenic 20.0%
!!! TTTTCTAAAGAGAAAAGAAA+CGG + chr1_3:13566541-13566560 None:intergenic 20.0%
!!! TTCTCTTTAGAAAAAAAGAT+AGG - chr1_3:13566547-13566566 Msa0105210:CDS 20.0%
!!! ATTCTGTCATTTCATAAATT+TGG + chr1_3:13567094-13567113 None:intergenic 20.0%
!!! TGATTATTGTTTATAATGGA+TGG + chr1_3:13567152-13567171 None:intergenic 20.0%
!! AGAGTGATTATTGTTTATAA+TGG + chr1_3:13567156-13567175 None:intergenic 20.0%
!! GAAGAATTCAAATCAATAAA+TGG - chr1_3:13567193-13567212 Msa0105210:intron 20.0%
!! TTCATCATTGCAATAATTAA+GGG + chr1_3:13568205-13568224 None:intergenic 20.0%
!! ATTCATCATTGCAATAATTA+AGG + chr1_3:13568206-13568225 None:intergenic 20.0%
!!! GAAAGCAATTTAATTTTTGT+TGG + chr1_3:13568295-13568314 None:intergenic 20.0%
!!! AGTTTTTGAGAAAGTTGAAT+TGG - chr1_3:13561421-13561440 Msa0105210:intron 25.0%
!!! GTTTTTGAGAAAGTTGAATT+GGG - chr1_3:13561422-13561441 Msa0105210:intron 25.0%
! TTCTGTTTGGTTAAAAACAA+CGG - chr1_3:13561649-13561668 Msa0105210:intron 25.0%
! TGTAGTGTTTGGTAAAATTA+TGG - chr1_3:13561732-13561751 Msa0105210:intron 25.0%
!!! TTTTTTTGAATTAAGACTGC+AGG - chr1_3:13561809-13561828 Msa0105210:intron 25.0%
! AGCTTAATGCATAAACATTT+CGG + chr1_3:13562916-13562935 None:intergenic 25.0%
!! TCCAAAAATAGTTTTTGTAC+TGG - chr1_3:13563311-13563330 Msa0105210:intron 25.0%
!! TCCAGTACAAAAACTATTTT+TGG + chr1_3:13563315-13563334 None:intergenic 25.0%
! CAGTCCTCAAATTTATAAAA+CGG + chr1_3:13563601-13563620 None:intergenic 25.0%
!! TGGTGATTACTTCTATATTT+TGG - chr1_3:13563655-13563674 Msa0105210:intron 25.0%
!! CTATTTATCCTTTTCTTGTA+TGG - chr1_3:13563689-13563708 Msa0105210:intron 25.0%
! TACACAAAAACACAAGAAAA+TGG + chr1_3:13563947-13563966 None:intergenic 25.0%
!!! ATTCTAAAATGCATTCAAGT+TGG + chr1_3:13563974-13563993 None:intergenic 25.0%
!!! GAATGCATTTTAGAATTTGA+TGG - chr1_3:13563978-13563997 Msa0105210:intron 25.0%
! AAGATTAAGAAAGGAACAAA+GGG - chr1_3:13564060-13564079 Msa0105210:intron 25.0%
! TAGTGATTTACTTGTTTGAA+GGG + chr1_3:13564254-13564273 None:intergenic 25.0%
! ATAGTGATTTACTTGTTTGA+AGG + chr1_3:13564255-13564274 None:intergenic 25.0%
!! TTTTGTTCTTCGATATTGTA+AGG - chr1_3:13564274-13564293 Msa0105210:intron 25.0%
! TTTGTTCTTCGATATTGTAA+GGG - chr1_3:13564275-13564294 Msa0105210:intron 25.0%
!! GAGTTGATTGAATTAATTGA+CGG + chr1_3:13564319-13564338 None:intergenic 25.0%
!! AGTTTCTGGAAATTTGTTTA+GGG + chr1_3:13564379-13564398 None:intergenic 25.0%
!! AAGTTTCTGGAAATTTGTTT+AGG + chr1_3:13564380-13564399 None:intergenic 25.0%
! GCAACATTTAGAAGATTAAA+TGG - chr1_3:13564542-13564561 Msa0105210:intron 25.0%
!! GGCTAAATAAAACAACTTTT+TGG + chr1_3:13564618-13564637 None:intergenic 25.0%
!! TAATCTTGATTTCTTTTAGG+AGG + chr1_3:13564927-13564946 None:intergenic 25.0%
!!! TAATCATGATTTGTTTTAGG+AGG + chr1_3:13565064-13565083 None:intergenic 25.0%
!!! GTTTTTTTTATCAGTACCTA+TGG + chr1_3:13565183-13565202 None:intergenic 25.0%
!!! TTAGCTGTATAAAAGTGTTT+GGG + chr1_3:13565479-13565498 None:intergenic 25.0%
! TTTACCTTAATAAATGAGCA+AGG + chr1_3:13565904-13565923 None:intergenic 25.0%
!! AACTGAAGTGTTATAATAGT+TGG - chr1_3:13566029-13566048 Msa0105210:intron 25.0%
! GAATTGAAAGTTATAAGAGT+TGG - chr1_3:13566058-13566077 Msa0105210:intron 25.0%
!! AATATTTAAGCATTTGCTAG+AGG + chr1_3:13566165-13566184 None:intergenic 25.0%
! TCTTATGATGTAGATAATTG+TGG + chr1_3:13566189-13566208 None:intergenic 25.0%
! TTGATTGCAGTATATTGAAT+TGG - chr1_3:13566300-13566319 Msa0105210:intron 25.0%
! AGAAAGATAATCAATTAGGA+AGG + chr1_3:13566337-13566356 None:intergenic 25.0%
! AAAGACAAAAGAATCATACA+AGG - chr1_3:13566512-13566531 Msa0105210:CDS 25.0%
!! TCTTTAGAAAAAAAGATAGG+CGG - chr1_3:13566550-13566569 Msa0105210:CDS 25.0%
!! TATCTGTAATGCTACTATTT+TGG - chr1_3:13566579-13566598 Msa0105210:CDS 25.0%
! ACACAACTTTCAAATTTACA+TGG + chr1_3:13566785-13566804 None:intergenic 25.0%
!!! TTGTTATTATTTTCTTGGTG+CGG - chr1_3:13566829-13566848 Msa0105210:intron 25.0%
!! TTTTACGATCAATGATTTCT+AGG + chr1_3:13566924-13566943 None:intergenic 25.0%
! AGAAATCATTGATCGTAAAA+AGG - chr1_3:13566924-13566943 Msa0105210:intron 25.0%
! ACTTGAAAAACAATTGTGAA+TGG + chr1_3:13567021-13567040 None:intergenic 25.0%
! ATAAAGACTCTTTACATTGT+CGG - chr1_3:13567268-13567287 Msa0105210:intron 25.0%
! CTTAAAAGTCATACAAATGA+TGG - chr1_3:13567348-13567367 Msa0105210:intron 25.0%
! AACATTATATTGTCCACATA+GGG + chr1_3:13567535-13567554 None:intergenic 25.0%
!!! ATATTTTGCTGTTGATTTAG+TGG + chr1_3:13567802-13567821 None:intergenic 25.0%
! ACTAAATCAACAGCAAAATA+TGG - chr1_3:13567801-13567820 Msa0105210:intron 25.0%
! CAAAAAACAAGTGAGTTATT+TGG + chr1_3:13567991-13568010 None:intergenic 25.0%
!!! CAAATAACTCACTTGTTTTT+TGG - chr1_3:13567989-13568008 Msa0105210:intron 25.0%
!!! GAATGCATATTTTGAACTTA+CGG - chr1_3:13568116-13568135 Msa0105210:CDS 25.0%
! GTAGTTTATGAAATATTTGC+AGG - chr1_3:13568234-13568253 Msa0105210:CDS 25.0%
! TTATTTGGATGTATCTATTG+AGG - chr1_3:13568433-13568452 Msa0105210:CDS 25.0%
! TATTTGGATGTATCTATTGA+GGG - chr1_3:13568434-13568453 Msa0105210:CDS 25.0%
! AAATTCATGCATCAAATAAC+AGG - chr1_3:13568506-13568525 Msa0105210:five_prime_UTR 25.0%
! AATTCATGCATCAAATAACA+GGG - chr1_3:13568507-13568526 Msa0105210:five_prime_UTR 25.0%
! CTTTAATTAATCATCTGTGA+TGG + chr1_3:13568566-13568585 None:intergenic 25.0%
!! TACTCAGAAAATTGGTGTTT+TGG + chr1_3:13561071-13561090 None:intergenic 30.0%
GAAGAAGTTACTCAGAAAAT+TGG + chr1_3:13561079-13561098 None:intergenic 30.0%
TGGTTAAAAACAACGGATAA+TGG - chr1_3:13561656-13561675 Msa0105210:intron 30.0%
! CTTATCTGTCGACTAATATA+AGG + chr1_3:13562060-13562079 None:intergenic 30.0%
GTAGTGTTTGGTTAGATTAA+CGG - chr1_3:13562114-13562133 Msa0105210:intron 30.0%
! TTTTGTAATACAAGACCAAG+AGG - chr1_3:13562473-13562492 Msa0105210:intron 30.0%
CACGTAGATATGAAAATGAT+AGG - chr1_3:13562561-13562580 Msa0105210:intron 30.0%
! TTAGTTGGTATGCAATGTTA+GGG + chr1_3:13562613-13562632 None:intergenic 30.0%
! TTTAGTTGGTATGCAATGTT+AGG + chr1_3:13562614-13562633 None:intergenic 30.0%
TCAAGTAGTAAGGATTTAGT+TGG + chr1_3:13562628-13562647 None:intergenic 30.0%
! ATACTTAAGTTTTCTGCTTC+AGG - chr1_3:13562786-13562805 Msa0105210:intron 30.0%
! TACTTAAGTTTTCTGCTTCA+GGG - chr1_3:13562787-13562806 Msa0105210:intron 30.0%
TTTATGTCACTCATTGAATG+AGG - chr1_3:13562867-13562886 Msa0105210:intron 30.0%
GTTTATGCATTAAGCTGTTA+TGG - chr1_3:13562920-13562939 Msa0105210:intron 30.0%
ATTGACGATCTTCAATTTCA+AGG + chr1_3:13563368-13563387 None:intergenic 30.0%
!!! CATGCCGTTTTATAAATTTG+AGG - chr1_3:13563594-13563613 Msa0105210:intron 30.0%
! AAAATTTCTCTCTTTTGCAC+AGG - chr1_3:13563713-13563732 Msa0105210:CDS 30.0%
! AAATTTCTCTCTTTTGCACA+GGG - chr1_3:13563714-13563733 Msa0105210:CDS 30.0%
! ACATCCTTTTTCTCAAGTTT+GGG + chr1_3:13563798-13563817 None:intergenic 30.0%
! TACATCCTTTTTCTCAAGTT+TGG + chr1_3:13563799-13563818 None:intergenic 30.0%
AAACACAAGAAAATGGAAAC+AGG + chr1_3:13563940-13563959 None:intergenic 30.0%
ACATCAAGCAAGATTAAGAA+AGG - chr1_3:13564051-13564070 Msa0105210:intron 30.0%
CAAGATTAAGAAAGGAACAA+AGG - chr1_3:13564059-13564078 Msa0105210:intron 30.0%
AGATTAAGAAAGGAACAAAG+GGG - chr1_3:13564061-13564080 Msa0105210:intron 30.0%
!!! TGTTTTATTTAGCCTATGAG+AGG - chr1_3:13564624-13564643 Msa0105210:intron 30.0%
AAAAAAATCCGAGCAATTCT+TGG - chr1_3:13564722-13564741 Msa0105210:intron 30.0%
AGTTCATCAATATCTGTCTT+GGG - chr1_3:13564801-13564820 Msa0105210:CDS 30.0%
TTAAAAACACAAGCTAGACT+AGG - chr1_3:13564951-13564970 Msa0105210:CDS 30.0%
TAAAAACACAAGCTAGACTA+GGG - chr1_3:13564952-13564971 Msa0105210:CDS 30.0%
TTAAAAACACAAGCTAGACT+AGG - chr1_3:13564951-13564970 Msa0105210:CDS 30.0%
! TTTTTATCAGTACCTATGGT+TGG + chr1_3:13565179-13565198 None:intergenic 30.0%
! TAATAGCCTGTCATTTACTT+AGG - chr1_3:13565227-13565246 Msa0105210:intron 30.0%
TCGGCATAACAGAATAAAAT+AGG + chr1_3:13565327-13565346 None:intergenic 30.0%
!! GTTAGCTGTATAAAAGTGTT+TGG + chr1_3:13565480-13565499 None:intergenic 30.0%
!! GCTATTGAAGTTTGTTAGTT+TGG + chr1_3:13565531-13565550 None:intergenic 30.0%
GTTATTTAGCGTAAATGACA+AGG - chr1_3:13565613-13565632 Msa0105210:intron 30.0%
ACAACTTTATCATTGCACTA+TGG - chr1_3:13565638-13565657 Msa0105210:intron 30.0%
!! GATTTTGATGATACATCTGT+TGG - chr1_3:13565859-13565878 Msa0105210:CDS 30.0%
TTAATAAATGAGCAAGGAAG+AGG + chr1_3:13565898-13565917 None:intergenic 30.0%
TCTTCCTTGCTCATTTATTA+AGG - chr1_3:13565897-13565916 Msa0105210:intron 30.0%
! TGAAGTGTTATAATAGTTGG+TGG - chr1_3:13566032-13566051 Msa0105210:intron 30.0%
!! AAAAAGGTTCCTCTAAAATG+AGG + chr1_3:13566121-13566140 None:intergenic 30.0%
!! AACCTTTTTAGTAACATGGT+GGG - chr1_3:13566132-13566151 Msa0105210:intron 30.0%
TCTACATCATAAGATGTGAT+AGG - chr1_3:13566195-13566214 Msa0105210:intron 30.0%
! ATCCTATATAAGATAATGGC+AGG + chr1_3:13566367-13566386 None:intergenic 30.0%
TTAGTTAAATATCCACCTTC+AGG + chr1_3:13566417-13566436 None:intergenic 30.0%
! CTTTAGAAAAAAAGATAGGC+GGG - chr1_3:13566551-13566570 Msa0105210:CDS 30.0%
!! TGTAATGCTACTATTTTGGA+TGG - chr1_3:13566583-13566602 Msa0105210:intron 30.0%
AACATATATTAAACCTGTCG+TGG + chr1_3:13566632-13566651 None:intergenic 30.0%
TAGATTTACAGTGAGTTTAG+TGG - chr1_3:13566652-13566671 Msa0105210:intron 30.0%
AGATTTACAGTGAGTTTAGT+GGG - chr1_3:13566653-13566672 Msa0105210:intron 30.0%
TTGATGAAAAAGGAATGAGA+TGG - chr1_3:13566857-13566876 Msa0105210:intron 30.0%
GTAAGAATCTGATCATTTAG+TGG - chr1_3:13567067-13567086 Msa0105210:intron 30.0%
TTCTTCTACTGATGATAGTT+TGG + chr1_3:13567179-13567198 None:intergenic 30.0%
ACAAATGATGGTTTATGAAC+TGG - chr1_3:13567360-13567379 Msa0105210:intron 30.0%
ATTTAATAAACCAGTTGCAG+AGG + chr1_3:13567484-13567503 None:intergenic 30.0%
! GCAACTGGTTTATTAAATAC+AGG - chr1_3:13567486-13567505 Msa0105210:intron 30.0%
GGTTTATTAAATACAGGTTG+AGG - chr1_3:13567492-13567511 Msa0105210:intron 30.0%
ACATTATATTGTCCACATAG+GGG + chr1_3:13567534-13567553 None:intergenic 30.0%
CAACATTATATTGTCCACAT+AGG + chr1_3:13567536-13567555 None:intergenic 30.0%
AATCAAGGAATTCCTTATTC+AGG - chr1_3:13567631-13567650 Msa0105210:intron 30.0%
!! AGTTCTGAAAAACCTGAATA+AGG + chr1_3:13567646-13567665 None:intergenic 30.0%
!!! GAGCAAATTTTTTACGCTTT+GGG - chr1_3:13567823-13567842 Msa0105210:intron 30.0%
ATGGTATAAACCGTTATAGA+TGG - chr1_3:13567953-13567972 Msa0105210:intron 30.0%
TCAACTTAAGCCATCTATAA+CGG + chr1_3:13567966-13567985 None:intergenic 30.0%
GTACAATGTATGTTAGTAGT+AGG + chr1_3:13568050-13568069 None:intergenic 30.0%
TTAAATTGCTTTCTGATCCA+TGG - chr1_3:13568302-13568321 Msa0105210:CDS 30.0%
TCATAGGCTAACTACTTATT+TGG - chr1_3:13568418-13568437 Msa0105210:CDS 30.0%
AAATGAAGAGAAAAACACTC+AGG - chr1_3:13568475-13568494 Msa0105210:exon 30.0%
ATTCATGCATCAAATAACAG+GGG - chr1_3:13568508-13568527 Msa0105210:five_prime_UTR 30.0%
! AGTATGATGGTGACAATGTA+GGG + chr1_3:13561143-13561162 None:intergenic 35.0%
! AATTGTTTGAAGAAGCATGC+AGG - chr1_3:13561318-13561337 Msa0105210:CDS 35.0%
TTGAATTGGGTGAGTATGAA+TGG - chr1_3:13561435-13561454 Msa0105210:intron 35.0%
! TCGTATGATGAAGCTTTTGA+TGG - chr1_3:13561461-13561480 Msa0105210:intron 35.0%
!!! AAGCTTTTGATGGTGTTGTT+AGG - chr1_3:13561471-13561490 Msa0105210:intron 35.0%
! TTGGGATTTTTGCTGATACT+AGG - chr1_3:13561540-13561559 Msa0105210:intron 35.0%
! TGGGATTTTTGCTGATACTA+GGG - chr1_3:13561541-13561560 Msa0105210:intron 35.0%
ATCAGAAATTCGCTAAGAAG+TGG + chr1_3:13561601-13561620 None:intergenic 35.0%
GAATAAGCTTAGCTTCTGTT+TGG - chr1_3:13561636-13561655 Msa0105210:intron 35.0%
! AGTTAGCTTATAGCTGATAG+CGG - chr1_3:13561689-13561708 Msa0105210:intron 35.0%
GTTACCAATAATACTGCACA+CGG - chr1_3:13562299-13562318 Msa0105210:intron 35.0%
TACGTGTGAAATTTGATTGC+AGG + chr1_3:13562547-13562566 None:intergenic 35.0%
TGTAACGATGTATGCATCAT+TGG - chr1_3:13562834-13562853 Msa0105210:intron 35.0%
GTAACGATGTATGCATCATT+GGG - chr1_3:13562835-13562854 Msa0105210:intron 35.0%
TAAACATTTCGGTGAGACAA+AGG + chr1_3:13562905-13562924 None:intergenic 35.0%
GCAGTTATCATGTATACAAG+TGG - chr1_3:13563241-13563260 Msa0105210:intron 35.0%
! ATGTATACAAGTGGAAGTAC+TGG - chr1_3:13563250-13563269 Msa0105210:intron 35.0%
TGATTGAATTGATCGACAGA+TGG + chr1_3:13563400-13563419 None:intergenic 35.0%
TGTTCCCAAACTTGAGAAAA+AGG - chr1_3:13563791-13563810 Msa0105210:CDS 35.0%
ATATCTAGCATACTTGCCAA+TGG - chr1_3:13563818-13563837 Msa0105210:intron 35.0%
AAAGGAGATCCATATCCTAT+AGG + chr1_3:13564018-13564037 None:intergenic 35.0%
GATTAAGAAAGGAACAAAGG+GGG - chr1_3:13564062-13564081 Msa0105210:intron 35.0%
! TGTGTTGATGCCAACTTTAT+TGG - chr1_3:13564092-13564111 Msa0105210:intron 35.0%
ATGCATGAAGCATATGAGAT+AGG + chr1_3:13564202-13564221 None:intergenic 35.0%
TACTTGTTTGAAGGGAAGTT+TGG + chr1_3:13564246-13564265 None:intergenic 35.0%
TCAATCAACTCTGATGAATC+TGG - chr1_3:13564328-13564347 Msa0105210:intron 35.0%
TTTATTTAGCCTATGAGAGG+AGG - chr1_3:13564627-13564646 Msa0105210:intron 35.0%
CAGTTCATCAATATCTGTCT+TGG - chr1_3:13564800-13564819 Msa0105210:CDS 35.0%
GATATCTTATAGCCTATGGT+TGG + chr1_3:13565042-13565061 None:intergenic 35.0%
TGTACTCCTAAGTAAATGAC+AGG + chr1_3:13565236-13565255 None:intergenic 35.0%
AGTCTGATTCATTCTTAAGC+TGG + chr1_3:13565365-13565384 None:intergenic 35.0%
AAATCCGTTGAGTGCTAAAT+GGG - chr1_3:13565412-13565431 Msa0105210:intron 35.0%
!! GGCTTTTTCTCCTTTTGTAA+AGG - chr1_3:13565659-13565678 Msa0105210:intron 35.0%
! TTCACATCTCCTCATTTTAG+AGG - chr1_3:13566109-13566128 Msa0105210:intron 35.0%
!! GAGGAACCTTTTTAGTAACA+TGG - chr1_3:13566128-13566147 Msa0105210:intron 35.0%
!! GAACCTTTTTAGTAACATGG+TGG - chr1_3:13566131-13566150 Msa0105210:intron 35.0%
AACCCACCATGTTACTAAAA+AGG + chr1_3:13566137-13566156 None:intergenic 35.0%
AGCCTGCCATTATCTTATAT+AGG - chr1_3:13566362-13566381 Msa0105210:CDS 35.0%
!! TGTTTTGTTAGCTAATCGAC+TGG - chr1_3:13566391-13566410 Msa0105210:CDS 35.0%
AAGTAACCAAGAGTGACATT+TGG + chr1_3:13566480-13566499 None:intergenic 35.0%
TGAGTTCGACAAAATCATTG+TGG + chr1_3:13566743-13566762 None:intergenic 35.0%
TTAGTATCATACCTTTCCCA+AGG + chr1_3:13566983-13567002 None:intergenic 35.0%
! TTGTATTTTTCCTCTGCAAC+TGG - chr1_3:13567471-13567490 Msa0105210:intron 35.0%
!! CTCTAAAGAAGAAAGCATCA+AGG - chr1_3:13567669-13567688 Msa0105210:intron 35.0%
!! TAAAGAAGAAAGCATCAAGG+AGG - chr1_3:13567672-13567691 Msa0105210:intron 35.0%
GTTAGAGGATTGTGATATGA+AGG + chr1_3:13567723-13567742 None:intergenic 35.0%
ACAATCCTCTAACTACATAG+TGG - chr1_3:13567730-13567749 Msa0105210:intron 35.0%
CATTACCACTATGTAGTTAG+AGG + chr1_3:13567738-13567757 None:intergenic 35.0%
!!! GGAGCAAATTTTTTACGCTT+TGG - chr1_3:13567822-13567841 Msa0105210:intron 35.0%
CTTCAAAGTTCAAGCTAAGA+TGG - chr1_3:13567934-13567953 Msa0105210:intron 35.0%
GATCCATCATGGATTCTTAA+GGG + chr1_3:13568028-13568047 None:intergenic 35.0%
GACTCTCTAAATACTGTCTT+TGG - chr1_3:13568138-13568157 Msa0105210:CDS 35.0%
ATAACTTCAGAAGATCTTCC+TGG + chr1_3:13568393-13568412 None:intergenic 35.0%
! TCTGAAGTTATACGCTTCAT+AGG - chr1_3:13568402-13568421 Msa0105210:CDS 35.0%
! GAGTATGATGGTGACAATGT+AGG + chr1_3:13561144-13561163 None:intergenic 40.0%
CATACGGAGAGATTACTGTT+GGG - chr1_3:13561344-13561363 Msa0105210:CDS 40.0%
ATTACTGTTGGGAACAAGAG+TGG - chr1_3:13561355-13561374 Msa0105210:intron 40.0%
! AACAAGAGTGGTTGTTTCGA+AGG - chr1_3:13561367-13561386 Msa0105210:intron 40.0%
! AGTGGTTGTTTCGAAGGAAA+TGG - chr1_3:13561373-13561392 Msa0105210:intron 40.0%
!! TGTTAGGTTTGCTAGTGGTT+TGG - chr1_3:13561487-13561506 Msa0105210:intron 40.0%
TTGCTGATACTAGGGTTGAA+TGG - chr1_3:13561549-13561568 Msa0105210:intron 40.0%
GATTACAAACCTGAAGAGCA+AGG + chr1_3:13561577-13561596 None:intergenic 40.0%
TTGTCCGTGTGCAGTATTAT+TGG + chr1_3:13562306-13562325 None:intergenic 40.0%
! CAAGACCAAGAGGATACTTT+TGG - chr1_3:13562483-13562502 Msa0105210:intron 40.0%
!! GCATACCAAAAGTATCCTCT+TGG + chr1_3:13562491-13562510 None:intergenic 40.0%
! TGTCTCTTCAATTTTGGGCT+GGG + chr1_3:13562730-13562749 None:intergenic 40.0%
! TTGTCTCTTCAATTTTGGGC+TGG + chr1_3:13562731-13562750 None:intergenic 40.0%
TCGGTGAGACAAAGGAAAAA+TGG + chr1_3:13562897-13562916 None:intergenic 40.0%
AATTCTGTTGTTGCAGACAG+AGG - chr1_3:13563003-13563022 Msa0105210:intron 40.0%
! AGGTCACGACAGTAATTTGT+GGG - chr1_3:13563023-13563042 Msa0105210:intron 40.0%
AGTGAAACGTGTGATATGCA+TGG - chr1_3:13563093-13563112 Msa0105210:CDS 40.0%
AAGTCGCTTAACATCTGCAA+AGG + chr1_3:13563173-13563192 None:intergenic 40.0%
TTTGCAGATGTTAAGCGACT+TGG - chr1_3:13563172-13563191 Msa0105210:CDS 40.0%
AGAGGTAAATCAGCATCAAC+AGG + chr1_3:13563208-13563227 None:intergenic 40.0%
TGATAACTGCAACATCAGCT+GGG + chr1_3:13563231-13563250 None:intergenic 40.0%
ATGATAACTGCAACATCAGC+TGG + chr1_3:13563232-13563251 None:intergenic 40.0%
!! TGGAAGTACTGGATTACCTA+AGG - chr1_3:13563261-13563280 Msa0105210:intron 40.0%
! AGTACTGGATTACCTAAGGT+TGG - chr1_3:13563265-13563284 Msa0105210:intron 40.0%
GTGAAAGGAAATCCAACCTT+AGG + chr1_3:13563280-13563299 None:intergenic 40.0%
TGGACTGTCAATCTAGTGAA+AGG + chr1_3:13563295-13563314 None:intergenic 40.0%
AGTTCAAGGATATGAGCCAT+TGG + chr1_3:13563837-13563856 None:intergenic 40.0%
! TAGAATTTGATGGCAGCAGT+TGG - chr1_3:13563988-13564007 Msa0105210:intron 40.0%
! AGAATTTGATGGCAGCAGTT+GGG - chr1_3:13563989-13564008 Msa0105210:intron 40.0%
GTTGGGATACCTATAGGATA+TGG - chr1_3:13564006-13564025 Msa0105210:intron 40.0%
CTTGCTTGATGTATCTGTGA+GGG + chr1_3:13564043-13564062 None:intergenic 40.0%
TCTTGCTTGATGTATCTGTG+AGG + chr1_3:13564044-13564063 None:intergenic 40.0%
CATGAAGCATATGAGATAGG+TGG + chr1_3:13564199-13564218 None:intergenic 40.0%
CATATGCTTCATGCATGTGT+TGG - chr1_3:13564206-13564225 Msa0105210:intron 40.0%
! GCTCATTTGAAGCAAGTTTC+TGG + chr1_3:13564393-13564412 None:intergenic 40.0%
ACTTGCTTCATTGCCAATGT+AGG - chr1_3:13564571-13564590 Msa0105210:intron 40.0%
AGGAGGTTGAAAGCAGTTAA+TGG - chr1_3:13564644-13564663 Msa0105210:intron 40.0%
TGAAAGCAGTTAATGGAAGC+TGG - chr1_3:13564651-13564670 Msa0105210:intron 40.0%
AAAATCCGAGCAATTCTTGG+TGG - chr1_3:13564725-13564744 Msa0105210:intron 40.0%
TGTGATTTCTCTCCAACCAT+AGG - chr1_3:13565027-13565046 Msa0105210:intron 40.0%
GGAGGATATCTTATAGCCTA+TGG + chr1_3:13565046-13565065 None:intergenic 40.0%
! TTATGCCGATTGAGCATTAG+AGG - chr1_3:13565338-13565357 Msa0105210:intron 40.0%
GAAATCCGTTGAGTGCTAAA+TGG - chr1_3:13565411-13565430 Msa0105210:intron 40.0%
CAAACCCATTTAGCACTCAA+CGG + chr1_3:13565419-13565438 None:intergenic 40.0%
!!! CATCCTTTGAGCTAGCTTTT+GGG + chr1_3:13565450-13565469 None:intergenic 40.0%
!!! TCATCCTTTGAGCTAGCTTT+TGG + chr1_3:13565451-13565470 None:intergenic 40.0%
AAAAGCTAGCTCAAAGGATG+AGG - chr1_3:13565450-13565469 Msa0105210:intron 40.0%
! CTTTTATACAGCTAACAGCC+CGG - chr1_3:13565484-13565503 Msa0105210:CDS 40.0%
! TTTTATACAGCTAACAGCCC+GGG - chr1_3:13565485-13565504 Msa0105210:CDS 40.0%
CAAATGCGGAATTGCAATGT+GGG + chr1_3:13565588-13565607 None:intergenic 40.0%
ACAAATGCGGAATTGCAATG+TGG + chr1_3:13565589-13565608 None:intergenic 40.0%
AGACCATATCCTTGACCTAT+TGG + chr1_3:13565808-13565827 None:intergenic 40.0%
ATAAATGAGCAAGGAAGAGG+AGG + chr1_3:13565895-13565914 None:intergenic 40.0%
CCAATTACAATTTCTCCACG+AGG + chr1_3:13566453-13566472 None:intergenic 40.0%
CCTCGTGGAGAAATTGTAAT+TGG - chr1_3:13566450-13566469 Msa0105210:CDS 40.0%
CGTGGAGAAATTGTAATTGG+TGG - chr1_3:13566453-13566472 Msa0105210:CDS 40.0%
!! ATTATTTTCTTGGTGCGGCT+AGG - chr1_3:13566834-13566853 Msa0105210:intron 40.0%
ATAGGGAGGTTTCATCAAGA+TGG - chr1_3:13566895-13566914 Msa0105210:intron 40.0%
GACATTGTTAAACTGCAGCA+TGG - chr1_3:13566946-13566965 Msa0105210:intron 40.0%
! CATGGAGAGTATGTTTCCTT+GGG - chr1_3:13566964-13566983 Msa0105210:intron 40.0%
AGAGTATGTTTCCTTGGGAA+AGG - chr1_3:13566969-13566988 Msa0105210:intron 40.0%
CCACACAGTAACTATGGAAA+GGG + chr1_3:13567567-13567586 None:intergenic 40.0%
TCAGTCCACATTGGAAGAAT+GGG - chr1_3:13567603-13567622 Msa0105210:intron 40.0%
! GAAGAATGGGCTTCAAATCA+AGG - chr1_3:13567616-13567635 Msa0105210:intron 40.0%
CATCATGGATTCTTAAGGGT+AGG + chr1_3:13568024-13568043 None:intergenic 40.0%
CTACCCTTAAGAATCCATGA+TGG - chr1_3:13568022-13568041 Msa0105210:intron 40.0%
GGATCCATCATGGATTCTTA+AGG + chr1_3:13568029-13568048 None:intergenic 40.0%
GTTAGTAGTAGGATCCATCA+TGG + chr1_3:13568039-13568058 None:intergenic 40.0%
TAAGGGAACAAACAGATTGC+AGG + chr1_3:13568188-13568207 None:intergenic 40.0%
TTCCTGGAAAGTCTTTCTGA+CGG + chr1_3:13568377-13568396 None:intergenic 40.0%
! GAACAGAAGATTTGCTTCGC+CGG - chr1_3:13561259-13561278 Msa0105210:CDS 45.0%
! ATGGGAAGGTGTGAGTACAT+TGG - chr1_3:13561292-13561311 Msa0105210:CDS 45.0%
! AGAAGCATGCAGGAAGCATA+CGG - chr1_3:13561328-13561347 Msa0105210:CDS 45.0%
GCATACGGAGAGATTACTGT+TGG - chr1_3:13561343-13561362 Msa0105210:CDS 45.0%
TCGAAGGAAATGGAGAAGAG+TGG - chr1_3:13561383-13561402 Msa0105210:intron 45.0%
AAGGAAATGGAGAAGAGTGG+TGG - chr1_3:13561386-13561405 Msa0105210:intron 45.0%
!! GGTGTTGTTAGGTTTGCTAG+TGG - chr1_3:13561482-13561501 Msa0105210:intron 45.0%
ATGGAAAGGATGAGAGGGTT+GGG - chr1_3:13561522-13561541 Msa0105210:intron 45.0%
TGAATGGTTCCTTGCTCTTC+AGG - chr1_3:13561565-13561584 Msa0105210:intron 45.0%
! TTCTGCTTCAGGGTTGTTTC+AGG - chr1_3:13562797-13562816 Msa0105210:intron 45.0%
GATGTATGCATCATTGGGAG+AGG - chr1_3:13562840-13562859 Msa0105210:intron 45.0%
GAGGTCACGACAGTAATTTG+TGG - chr1_3:13563022-13563041 Msa0105210:intron 45.0%
! CAACAGATGAGGCATCAGAT+GGG + chr1_3:13563129-13563148 None:intergenic 45.0%
TATCCTTGAACTAGCAGCTG+AGG - chr1_3:13563845-13563864 Msa0105210:intron 45.0%
ATACCTCAGCTGCTAGTTCA+AGG + chr1_3:13563851-13563870 None:intergenic 45.0%
ACTAGCAGCTGAGGTATGTA+AGG - chr1_3:13563854-13563873 Msa0105210:intron 45.0%
CTAGCAGCTGAGGTATGTAA+GGG - chr1_3:13563855-13563874 Msa0105210:intron 45.0%
TAGCAGCTGAGGTATGTAAG+GGG - chr1_3:13563856-13563875 Msa0105210:intron 45.0%
GATGTATCTGTGAGGGTCAA+AGG + chr1_3:13564036-13564055 None:intergenic 45.0%
GGTACAGCAGCCAATAAAGT+TGG + chr1_3:13564105-13564124 None:intergenic 45.0%
GAAGCATATGAGATAGGTGG+AGG + chr1_3:13564196-13564215 None:intergenic 45.0%
AAGGGAAGTTTGGATGCAAC+TGG + chr1_3:13564236-13564255 None:intergenic 45.0%
GCCAATGTAGGTGAATGCAA+CGG - chr1_3:13564583-13564602 Msa0105210:intron 45.0%
CCAATGTAGGTGAATGCAAC+GGG - chr1_3:13564584-13564603 Msa0105210:intron 45.0%
TGCTTTCAACCTCCTCTCAT+AGG + chr1_3:13564639-13564658 None:intergenic 45.0%
GCAGTTAATGGAAGCTGGTT+TGG - chr1_3:13564656-13564675 Msa0105210:intron 45.0%
ATCCGTTTCATACTGTCTGG+CGG - chr1_3:13564752-13564771 Msa0105210:intron 45.0%
TGCTGAGTATCACCAGAAAG+GGG + chr1_3:13564782-13564801 None:intergenic 45.0%
CTGCTGAGTATCACCAGAAA+GGG + chr1_3:13564783-13564802 None:intergenic 45.0%
ACTGCTGAGTATCACCAGAA+AGG + chr1_3:13564784-13564803 None:intergenic 45.0%
CGTGATTTCTCTCCAACCAT+AGG - chr1_3:13565164-13565183 Msa0105210:intron 45.0%
CTGGTCCTCTAATGCTCAAT+CGG + chr1_3:13565346-13565365 None:intergenic 45.0%
! CGTTGAGTGCTAAATGGGTT+TGG - chr1_3:13565417-13565436 Msa0105210:intron 45.0%
CATCCCAAAAGCTAGCTCAA+AGG - chr1_3:13565444-13565463 Msa0105210:intron 45.0%
! TTTGGAGTCCCACATTGCTA+AGG + chr1_3:13565513-13565532 None:intergenic 45.0%
GCAATGTGGGAATTGAACAC+AGG + chr1_3:13565575-13565594 None:intergenic 45.0%
GTCATTTCCAGTGCTCCAAT+AGG - chr1_3:13565790-13565809 Msa0105210:CDS 45.0%
GCTCCAATAGGTCAAGGATA+TGG - chr1_3:13565802-13565821 Msa0105210:CDS 45.0%
ACAATTTCTCCACGAGGCAT+TGG + chr1_3:13566447-13566466 None:intergenic 45.0%
GAACTATATCTGTCCACGAC+AGG - chr1_3:13566616-13566635 Msa0105210:intron 45.0%
!! TGCGGCTAGGTTGATGAAAA+AGG - chr1_3:13566847-13566866 Msa0105210:intron 45.0%
! GGAATGAGATGGTTCTACAC+TGG - chr1_3:13566868-13566887 Msa0105210:intron 45.0%
! TGGTTCTACACTGGTGACAT+AGG - chr1_3:13566877-13566896 Msa0105210:intron 45.0%
GGTTCTACACTGGTGACATA+GGG - chr1_3:13566878-13566897 Msa0105210:intron 45.0%
! GCATGGAGAGTATGTTTCCT+TGG - chr1_3:13566963-13566982 Msa0105210:intron 45.0%
TCTTATTGTCAGCCCCTATG+TGG - chr1_3:13567519-13567538 Msa0105210:intron 45.0%
CCCTTTCCATAGTTACTGTG+TGG - chr1_3:13567564-13567583 Msa0105210:intron 45.0%
GCCACACAGTAACTATGGAA+AGG + chr1_3:13567568-13567587 None:intergenic 45.0%
CAAGTGCCACACAGTAACTA+TGG + chr1_3:13567573-13567592 None:intergenic 45.0%
! TTACTGTGTGGCACTTGTTG+TGG - chr1_3:13567576-13567595 Msa0105210:intron 45.0%
CTCAGTCCACATTGGAAGAA+TGG - chr1_3:13567602-13567621 Msa0105210:intron 45.0%
TGAAGCCCATTCTTCCAATG+TGG + chr1_3:13567611-13567630 None:intergenic 45.0%
GGTGCATGCATCACTAGTAA+AGG - chr1_3:13567693-13567712 Msa0105210:intron 45.0%
TCGCCCACATCAATCTTCAA+CGG - chr1_3:13568080-13568099 Msa0105210:CDS 45.0%
CCACCGTTGAAGATTGATGT+GGG + chr1_3:13568086-13568105 None:intergenic 45.0%
TCCACCGTTGAAGATTGATG+TGG + chr1_3:13568087-13568106 None:intergenic 45.0%
GGAAGCAAAGAAAGCTCGTT+TGG - chr1_3:13568255-13568274 Msa0105210:CDS 45.0%
AACAGGAGAGTTGCGAGGAT+GGG + chr1_3:13561167-13561186 None:intergenic 50.0%
! GGAAGGTGTGAGTACATTGG+CGG - chr1_3:13561295-13561314 Msa0105210:CDS 50.0%
! ATGGAGAAGAGTGGTGGTGA+TGG - chr1_3:13561392-13561411 Msa0105210:intron 50.0%
! TGCTAGTGGTTTGGCTGTGT+TGG - chr1_3:13561496-13561515 Msa0105210:intron 50.0%
! GCTAGTGGTTTGGCTGTGTT+GGG - chr1_3:13561497-13561516 Msa0105210:intron 50.0%
TGGGACATGGAAAGGATGAG+AGG - chr1_3:13561516-13561535 Msa0105210:intron 50.0%
GGGACATGGAAAGGATGAGA+GGG - chr1_3:13561517-13561536 Msa0105210:intron 50.0%
CATGGAAAGGATGAGAGGGT+TGG - chr1_3:13561521-13561540 Msa0105210:intron 50.0%
! CCAACAGATGAGGCATCAGA+TGG + chr1_3:13563130-13563149 None:intergenic 50.0%
CCATCTGATGCCTCATCTGT+TGG - chr1_3:13563127-13563146 Msa0105210:CDS 50.0%
GATGCCTCATCTGTTGGACA+CGG - chr1_3:13563133-13563152 Msa0105210:CDS 50.0%
GCAGCAGTTGGGATACCTAT+AGG - chr1_3:13564000-13564019 Msa0105210:intron 50.0%
CGAACACGGTCAAGAATTGC+TGG + chr1_3:13564126-13564145 None:intergenic 50.0%
ATTCTTGACCGTGTTCGCGA+TGG - chr1_3:13564129-13564148 Msa0105210:intron 50.0%
TGAACACACCATCGCGAACA+CGG + chr1_3:13564140-13564159 None:intergenic 50.0%
TCGCGATGGTGTGTTCAAGA+AGG - chr1_3:13564143-13564162 Msa0105210:intron 50.0%
CCCGTTGCATTCACCTACAT+TGG + chr1_3:13564587-13564606 None:intergenic 50.0%
ATGTAGGTGAATGCAACGGG+AGG - chr1_3:13564587-13564606 Msa0105210:intron 50.0%
TGCGACCACCAAGAATTGCT+CGG + chr1_3:13564733-13564752 None:intergenic 50.0%
CGCATCCGTTTCATACTGTC+TGG - chr1_3:13564749-13564768 Msa0105210:intron 50.0%
CACCGCCAGACAGTATGAAA+CGG + chr1_3:13564757-13564776 None:intergenic 50.0%
ACTGTACGCGCAGATATGTC+AGG - chr1_3:13565201-13565220 Msa0105210:intron 50.0%
TCCCACATTGCTAAGGTTCC+CGG + chr1_3:13565506-13565525 None:intergenic 50.0%
TCCAGTGCTCCAATAGGTCA+AGG - chr1_3:13565796-13565815 Msa0105210:CDS 50.0%
TCCTTGACCTATTGGAGCAC+TGG + chr1_3:13565800-13565819 None:intergenic 50.0%
GGTCTTACAGAGACTTGTGC+TGG - chr1_3:13565823-13565842 Msa0105210:CDS 50.0%
CTTACAGAGACTTGTGCTGG+TGG - chr1_3:13565826-13565845 Msa0105210:CDS 50.0%
GATACATCTGTTGGCCGTGT+TGG - chr1_3:13565868-13565887 Msa0105210:intron 50.0%
AAGGAAGAGGAGGTCCAACA+CGG + chr1_3:13565885-13565904 None:intergenic 50.0%
!! TAGCTAATCGACTGGCCTGA+AGG - chr1_3:13566399-13566418 Msa0105210:CDS 50.0%
GGTGGTCCAAATGTCACTCT+TGG - chr1_3:13566471-13566490 Msa0105210:CDS 50.0%
TCTACACTGGTGACATAGGG+AGG - chr1_3:13566881-13566900 Msa0105210:intron 50.0%
TGTGGCTTCTCAGTCCACAT+TGG - chr1_3:13567594-13567613 Msa0105210:intron 50.0%
CCCACATCAATCTTCAACGG+TGG - chr1_3:13568083-13568102 Msa0105210:CDS 50.0%
TGCTCTCAAGCTCAAGAGAG+AGG - chr1_3:13568351-13568370 Msa0105210:CDS 50.0%
! TGCGAGGATGGGGAGTATGA+TGG + chr1_3:13561156-13561175 None:intergenic 55.0%
ACAGGAGAGTTGCGAGGATG+GGG + chr1_3:13561166-13561185 None:intergenic 55.0%
GAACAGGAGAGTTGCGAGGA+TGG + chr1_3:13561168-13561187 None:intergenic 55.0%
CGGAGTTTACTGGAACTCCG+CGG + chr1_3:13561211-13561230 None:intergenic 55.0%
CGGAGTTCCAGTAAACTCCG+CGG - chr1_3:13561211-13561230 Msa0105210:CDS 55.0%
TGATCGTCCGCGGAGTTTAC+TGG + chr1_3:13561221-13561240 None:intergenic 55.0%
GTAAACTCCGCGGACGATCA+AGG - chr1_3:13561221-13561240 Msa0105210:CDS 55.0%
ATCAAGGCGGTGTGACAGTG+CGG - chr1_3:13561237-13561256 Msa0105210:CDS 55.0%
! CAGAAGATTTGCTTCGCCGG+TGG - chr1_3:13561262-13561281 Msa0105210:CDS 55.0%
ATTTGCTTCGCCGGTGGAGA+CGG - chr1_3:13561268-13561287 Msa0105210:CDS 55.0%
!! GAGAAGAGTGGTGGTGATGG+TGG - chr1_3:13561395-13561414 Msa0105210:intron 55.0%
GGTTTGGCTGTGTTGGGACA+TGG - chr1_3:13561503-13561522 Msa0105210:intron 55.0%
GGCTGTGTTGGGACATGGAA+AGG - chr1_3:13561508-13561527 Msa0105210:intron 55.0%
ACTGCAACATCAGCTGGGAG+AGG + chr1_3:13563226-13563245 None:intergenic 55.0%
!! ATGGAAGCTGGTTTGGAGCC+TGG - chr1_3:13564663-13564682 Msa0105210:intron 55.0%
!! TGGAAGCTGGTTTGGAGCCT+GGG - chr1_3:13564664-13564683 Msa0105210:intron 55.0%
GGGATTGGAGAAGGCTCTCT+GGG - chr1_3:13564685-13564704 Msa0105210:intron 55.0%
CCCACATTGCTAAGGTTCCC+GGG + chr1_3:13565505-13565524 None:intergenic 55.0%
CCCGGGAACCTTAGCAATGT+GGG - chr1_3:13565502-13565521 Msa0105210:CDS 55.0%
TCAATAGCCACCCTCACACC+TGG - chr1_3:13565543-13565562 Msa0105210:CDS 55.0%
!! CTAATCGACTGGCCTGAAGG+TGG - chr1_3:13566402-13566421 Msa0105210:CDS 55.0%
AATGACTCGCCAATGCCTCG+TGG - chr1_3:13566435-13566454 Msa0105210:CDS 55.0%
GATCCATGGACACCTGAGTC+TGG - chr1_3:13568316-13568335 Msa0105210:CDS 55.0%
AAGCCAGACTCAGGTGTCCA+TGG + chr1_3:13568322-13568341 None:intergenic 55.0%
GCAGTGACTAAGCCAGACTC+AGG + chr1_3:13568331-13568350 None:intergenic 55.0%
GGCCGTCAGAAAGACTTTCC+AGG - chr1_3:13568372-13568391 Msa0105210:CDS 55.0%
TGCGGAACAGGAGAGTTGCG+AGG + chr1_3:13561172-13561191 None:intergenic 60.0%
TGGGGTGGTTAGTGCGGAAC+AGG + chr1_3:13561184-13561203 None:intergenic 60.0%
! GGCGTTTGGGGTGGTTAGTG+CGG + chr1_3:13561190-13561209 None:intergenic 60.0%
ACTAACCACCCCAAACGCCG+CGG - chr1_3:13561191-13561210 Msa0105210:exon 60.0%
ACTGGAACTCCGCGGCGTTT+GGG + chr1_3:13561203-13561222 None:intergenic 60.0%
TACTGGAACTCCGCGGCGTT+TGG + chr1_3:13561204-13561223 None:intergenic 60.0%
AACTCCGCGGACGATCAAGG+CGG - chr1_3:13561224-13561243 Msa0105210:CDS 60.0%
CCAGCCGTGTCCAACAGATG+AGG + chr1_3:13563140-13563159 None:intergenic 60.0%
CCTCATCTGTTGGACACGGC+TGG - chr1_3:13563137-13563156 Msa0105210:CDS 60.0%
!! GGAAGCTGGTTTGGAGCCTG+GGG - chr1_3:13564665-13564684 Msa0105210:intron 60.0%
!! CTGGTTTGGAGCCTGGGGAT+TGG - chr1_3:13564670-13564689 Msa0105210:intron 60.0%
TGGAGCCTGGGGATTGGAGA+AGG - chr1_3:13564676-13564695 Msa0105210:intron 60.0%
GAGAGCCTTCTCCAATCCCC+AGG + chr1_3:13564684-13564703 None:intergenic 60.0%
GGGGATTGGAGAAGGCTCTC+TGG - chr1_3:13564684-13564703 Msa0105210:intron 60.0%
GCCCGGGAACCTTAGCAATG+TGG - chr1_3:13565501-13565520 Msa0105210:CDS 60.0%
ATTGAACACAGGCCCACGCC+AGG + chr1_3:13565564-13565583 None:intergenic 60.0%
CTGGAACTCCGCGGCGTTTG+GGG + chr1_3:13561202-13561221 None:intergenic 65.0%
CACACCGCCTTGATCGTCCG+CGG + chr1_3:13561231-13561250 None:intergenic 65.0%
TTCGCCGGTGGAGACGGCAT+GGG - chr1_3:13561274-13561293 Msa0105210:CDS 65.0%
CCTTCCCATGCCGTCTCCAC+CGG + chr1_3:13561281-13561300 None:intergenic 65.0%
TCTGGCGGTGCTCCCCTTTC+TGG - chr1_3:13564767-13564786 Msa0105210:intron 65.0%
GAACTCCGCGGCGTTTGGGG+TGG + chr1_3:13561199-13561218 None:intergenic 70.0%
CTTCGCCGGTGGAGACGGCA+TGG - chr1_3:13561273-13561292 Msa0105210:CDS 70.0%
CCGGTGGAGACGGCATGGGA+AGG - chr1_3:13561278-13561297 Msa0105210:CDS 70.0%
AGCCACCCTCACACCTGGCG+TGG - chr1_3:13565548-13565567 Msa0105210:CDS 70.0%
GCCACCCTCACACCTGGCGT+GGG - chr1_3:13565549-13565568 Msa0105210:CDS 70.0%
CAGGCCCACGCCAGGTGTGA+GGG + chr1_3:13565556-13565575 None:intergenic 70.0%
ACAGGCCCACGCCAGGTGTG+AGG + chr1_3:13565557-13565576 None:intergenic 70.0%
GCCCACGCCAGGTGTGAGGG+TGG + chr1_3:13565553-13565572 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13561002 13568618 13561002 ID=Msa0105210;Name=Msa0105210
chr1_3 mRNA 13561002 13568618 13561002 ID=Msa0105210-mRNA-1;Parent=Msa0105210;Name=Msa0105210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132|1|1|1|1|1|11|195|697
chr1_3 exon 13561002 13561364 13561002 ID=Msa0105210-mRNA-1:exon:5346;Parent=Msa0105210-mRNA-1
chr1_3 exon 13561906 13562112 13561906 ID=Msa0105210-mRNA-1:exon:5345;Parent=Msa0105210-mRNA-1
chr1_3 exon 13562630 13562764 13562630 ID=Msa0105210-mRNA-1:exon:5344;Parent=Msa0105210-mRNA-1
chr1_3 exon 13563087 13563218 13563087 ID=Msa0105210-mRNA-1:exon:5343;Parent=Msa0105210-mRNA-1
chr1_3 exon 13563702 13563819 13563702 ID=Msa0105210-mRNA-1:exon:5342;Parent=Msa0105210-mRNA-1
chr1_3 exon 13564798 13565027 13564798 ID=Msa0105210-mRNA-1:exon:5341;Parent=Msa0105210-mRNA-1
chr1_3 exon 13565456 13565629 13565456 ID=Msa0105210-mRNA-1:exon:5340;Parent=Msa0105210-mRNA-1
chr1_3 exon 13565754 13565885 13565754 ID=Msa0105210-mRNA-1:exon:5339;Parent=Msa0105210-mRNA-1
chr1_3 exon 13566338 13566601 13566338 ID=Msa0105210-mRNA-1:exon:5338;Parent=Msa0105210-mRNA-1
chr1_3 exon 13566732 13566812 13566732 ID=Msa0105210-mRNA-1:exon:5337;Parent=Msa0105210-mRNA-1
chr1_3 exon 13568034 13568618 13568034 ID=Msa0105210-mRNA-1:exon:5336;Parent=Msa0105210-mRNA-1
chr1_3 five_prime_UTR 13568487 13568618 13568487 ID=Msa0105210-mRNA-1:five_prime_utr;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13568034 13568486 13568034 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13566732 13566812 13566732 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13566338 13566601 13566338 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13565754 13565885 13565754 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13565456 13565629 13565456 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13564798 13565027 13564798 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13563702 13563819 13563702 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13563087 13563218 13563087 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13562630 13562764 13562630 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13561906 13562112 13561906 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 CDS 13561197 13561364 13561197 ID=Msa0105210-mRNA-1:cds;Parent=Msa0105210-mRNA-1
chr1_3 three_prime_UTR 13561002 13561196 13561002 ID=Msa0105210-mRNA-1:three_prime_utr;Parent=Msa0105210-mRNA-1
Gene Sequence

>Msa0105210

ATGAATCCCTACATTGTCACCATCATACTCCCCATCCTCGCAACTCTCCTGTTCCGCACTAACCACCCCAAACGCCGCGGAGTTCCAGTAAACTCCGCGGACGATCAAGGCGGTGTGACAGTGCGGAACAGAAGATTTGCTTCGCCGGTGGAGACGGCATGGGAAGGTGTGAGTACATTGGCGGAATTGTTTGAAGAAGCATGCAGGAAGCATACGGAGAGATTACTGTTGGGAACAAGAGTGGTTGTTTCGAAGGAAATGGAGAAGAGTGGTGGTGATGGTGGAAAAGTTTTTGAGAAAGTTGAATTGGGTGAGTATGAATGGTTGTCGTATGATGAAGCTTTTGATGGTGTTGTTAGGTTTGCTAGTGGTTTGGCTGTGTTGGGACATGGAAAGGATGAGAGGGTTGGGATTTTTGCTGATACTAGGGTTGAATGGTTCCTTGCTCTTCAGGGTTGTTTCAGGCGAAATGTGACAGTTGTAACGATGTATGCATCATTGGGAGAGGAAGCTTTATGTCACTCATTGAATGAGACAGAGGTCACGACAGTAATTTGTGGGCAGAAAGAATTGAAAACACTTGTAAATATTAGCGGACAACTTGACTCAGTGAAACGTGTGATATGCATGGATGATGATATCCCATCTGATGCCTCATCTGTTGGACACGGCTGGACAATCATATCCTTTGCAGATGTTAAGCGACTTGGTAAAGAAAATCCTGTTGATGCTGATTTACCTCTCCCAGCTGATGTTGCAGTTATCATGTATACAAGTGGAAGTACTGGATTACCTAAGGGTGTTATGATGACACATGCTAATGTTTTAGCTACACTCTCTGCTGTGAAGATGATTGTTCCCAAACTTGAGAAAAAGGATGTATATCTAGCATACTTGCCAATGGCTCATATCCTTGAACTAGCAGCTGAGAATTTGATGGCAGCAGTTGGGATACCTATAGGATATGGATCTCCTTTGACCCTCACAGATACATCAAGCAAGATTAAGAAAGGAACAAAGGGGGATGCTACTGTGTTGATGCCAACTTTATTGGCTGCTGTACCAGCAATTCTTGACCGTGTTCGCGATGGTGTGTTCAAGAAGGTGAATGCAACGGGAGGATTACCCAAAAAGTTGTTTTATTTAGCCTATGAGAGGAGGTTGAAAGCAGTTAATGGAAGCTGGTTTGGAGCCTGGGGATTGGAGAAGGCTCTCTGGGATTTTCTTGTGTTTAAAAAAATCCGAGCAATTCTTGGTGGTCGCATCCGTTTCATACTGTCTGGCGGTGCTCCCCTTTCTGGTGATACTCAGCAGTTCATCAATATCTGTCTTGGTGCTCCAATAGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGAACATTCTCTGATTTTGATGATACATCTGTTGGCCGTGTTGGACCTCCTCTTCCTTGCTCATTTATTAAGCTAATCGACTGGCCTGAAGGTGGATATTTAACTAATGACTCGCCAATGCCTCGTGGAGAAATTGTAATTGGTGGTCCAAATGTCACTCTTGGTTACTTCAAGAATGAAGAAAAGACAAAAGAATCATACAAGGTTGATGAAAAAGGAATGAGATGGTTCTACACTGGTGACATAGGGAGGTTTCATCAAGATGGTTGCCTAGAAATCATTGATCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAGTATGTTTCCTTGGGAAAGGTTGAGGCAGCTCTTATTGTCAGCCCCTATGTGGACAATATAATGTTGCATGCTGACCCTTTCCATAGTTACTGTGTGGCACTTGTTGTGGCTTCTCAGTCCACATTGGAAGAATGGGCTTCAAATCAAGGAATTCCTTATTCAGGTTTTTCAGAACTTTGCTCTAAAGAAGAAAGCATCAAGGAGGTGCATGCATCACTAGTAAAGGAAGCAAAGAAAGCTCGTTTGGAGAAATTTGAGATTCCAACAAAAATTAAATTGCTTTCTGATCCATGGACACCTGAGTCTGGCTTAGTCACTGCTGCTCTCAAGCTCAAGAGAGAGGCCGTCAGAAAGACTTTCCAGGAAGATCTTCTGAAGTTATACGCTTCATAG
Protein sequence

>Msa0105210

MNPYIVTIILPILATLLFRTNHPKRRGVPVNSADDQGGVTVRNRRFASPVETAWEGVSTLAELFEEACRKHTERLLLGTRVVVSKEMEKSGGDGGKVFEKVELGEYEWLSYDEAFDGVVRFASGLAVLGHGKDERVGIFADTRVEWFLALQGCFRRNVTVVTMYASLGEEALCHSLNETEVTTVICGQKELKTLVNISGQLDSVKRVICMDDDIPSDASSVGHGWTIISFADVKRLGKENPVDADLPLPADVAVIMYTSGSTGLPKGVMMTHANVLATLSAVKMIVPKLEKKDVYLAYLPMAHILELAAENLMAAVGIPIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLLAAVPAILDRVRDGVFKKVNATGGLPKKLFYLAYERRLKAVNGSWFGAWGLEKALWDFLVFKKIRAILGGRIRFILSGGAPLSGDTQQFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSFIKLIDWPEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDEKGMRWFYTGDIGRFHQDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMLHADPFHSYCVALVVASQSTLEEWASNQGIPYSGFSELCSKEESIKEVHASLVKEAKKARLEKFEIPTKIKLLSDPWTPESGLVTAALKLKREAVRKTFQEDLLKLYAS*