AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875630 MtrunA17_Chr6g0456681 96.462 424 15 0 1 424 1 424 0.0 863
Msa0875630 MtrunA17_Chr6g0456691 53.256 430 182 7 1 415 1 426 1.88e-172 489
Msa0875630 MtrunA17_Chr2g0283851 51.622 370 165 10 48 408 36 400 7.17e-134 390
Msa0875630 MtrunA17_Chr7g0221281 57.983 238 100 0 174 411 2 239 1.55e-105 313
Msa0875630 MtrunA17_Chr8g0387921 41.011 356 199 6 59 408 69 419 1.44e-98 301
Msa0875630 MtrunA17_Chr8g0391481 39.267 382 207 10 47 414 9 379 1.97e-98 299
Msa0875630 MtrunA17_Chr8g0347321 42.210 353 194 5 61 408 92 439 3.80e-98 300
Msa0875630 MtrunA17_Chr6g0451321 41.223 376 201 10 41 411 100 460 1.52e-96 297
Msa0875630 MtrunA17_Chr7g0226991 40.390 359 191 8 62 408 55 402 4.12e-96 294
Msa0875630 MtrunA17_Chr5g0414061 38.386 409 219 11 24 408 39 438 7.33e-94 289
Msa0875630 MtrunA17_Chr3g0140371 40.217 368 195 9 58 413 12 366 2.34e-93 285
Msa0875630 MtrunA17_Chr5g0414091 39.718 355 200 7 62 408 83 431 7.55e-92 284
Msa0875630 MtrunA17_Chr5g0414041 41.436 362 194 7 57 408 80 433 3.32e-89 277
Msa0875630 MtrunA17_Chr5g0414051 38.481 395 215 13 31 408 37 420 5.02e-89 276
Msa0875630 MtrunA17_Chr6g0476041 32.718 379 225 8 44 408 152 514 1.93e-78 252
Msa0875630 MtrunA17_Chr1g0188191 33.777 376 220 8 51 408 217 581 1.42e-77 251
Msa0875630 MtrunA17_Chr7g0221271 46.411 209 92 6 1 193 1 205 1.15e-57 188
Msa0875630 MtrunA17_Chr7g0259711 33.148 359 209 12 64 408 91 432 2.30e-55 189
Msa0875630 MtrunA17_Chr4g0071391 31.250 368 218 12 62 415 107 453 2.45e-53 184
Msa0875630 MtrunA17_Chr2g0287901 34.121 381 216 15 50 416 85 444 9.91e-53 182
Msa0875630 MtrunA17_Chr4g0005491 32.958 355 211 11 64 404 62 403 3.17e-52 180
Msa0875630 MtrunA17_Chr1g0175671 34.146 369 182 16 64 404 170 505 2.87e-51 180
Msa0875630 MtrunA17_Chr8g0368461 31.514 403 216 15 36 408 156 528 4.58e-50 177
Msa0875630 MtrunA17_Chr7g0243301 30.886 395 246 13 23 404 25 405 1.22e-49 173
Msa0875630 MtrunA17_Chr5g0437601 31.593 364 219 11 58 408 78 424 2.48e-49 173
Msa0875630 MtrunA17_Chr7g0258851 33.243 370 192 16 64 408 248 587 4.18e-49 176
Msa0875630 MtrunA17_Chr7g0269991 31.579 361 201 11 64 408 137 467 6.79e-49 172
Msa0875630 MtrunA17_Chr5g0413271 30.532 357 211 10 64 408 145 476 1.03e-48 172
Msa0875630 MtrunA17_Chr8g0384151 32.133 361 211 11 56 408 82 416 1.54e-48 171
Msa0875630 MtrunA17_Chr7g0221291 47.647 170 74 3 1 155 1 170 2.24e-48 162
Msa0875630 MtrunA17_Chr1g0213281 30.457 394 217 13 45 408 153 519 5.28e-48 171
Msa0875630 MtrunA17_Chr3g0105301 32.432 370 197 16 54 404 37 372 2.42e-47 166
Msa0875630 MtrunA17_Chr4g0068111 29.561 433 253 14 12 416 52 460 2.66e-47 168
Msa0875630 MtrunA17_Chr4g0005481 30.328 366 223 12 56 408 100 446 1.89e-46 166
Msa0875630 MtrunA17_Chr8g0360521 29.700 367 222 14 62 412 69 415 3.25e-46 164
Msa0875630 MtrunA17_Chr5g0430371 28.608 388 211 12 51 408 48 399 5.96e-46 163
Msa0875630 MtrunA17_Chr6g0455901 30.679 427 237 13 23 415 22 423 6.91e-46 164
Msa0875630 MtrunA17_Chr3g0114101 29.888 358 222 9 64 408 89 430 1.37e-45 163
Msa0875630 MtrunA17_Chr3g0085071 31.405 363 188 15 60 404 40 359 5.33e-45 160
Msa0875630 MtrunA17_Chr3g0085081 29.640 361 199 12 58 404 25 344 1.29e-44 158
Msa0875630 MtrunA17_Chr4g0070341 30.851 376 209 13 56 408 124 471 5.18e-44 159
Msa0875630 MtrunA17_Chr5g0414081 36.893 206 119 6 220 415 2 206 1.05e-43 152
Msa0875630 MtrunA17_Chr3g0113671 29.752 363 214 11 62 404 104 445 1.73e-43 158
Msa0875630 MtrunA17_Chr3g0091031 29.944 354 207 10 58 404 25 344 1.05e-42 153
Msa0875630 MtrunA17_Chr4g0006991 31.285 358 217 13 64 408 86 427 4.02e-41 151
Msa0875630 MtrunA17_Chr4g0045951 31.378 392 222 15 20 404 7 358 1.20e-40 148
Msa0875630 MtrunA17_Chr2g0314801 30.446 381 221 12 30 404 7 349 3.37e-40 147
Msa0875630 MtrunA17_Chr3g0097891 29.609 358 216 12 54 404 18 346 1.90e-39 144
Msa0875630 MtrunA17_Chr4g0045941 30.226 354 214 12 54 404 23 346 5.23e-39 143
Msa0875630 MtrunA17_Chr2g0283581 29.491 373 214 14 48 410 27 360 6.39e-39 143
Msa0875630 MtrunA17_Chr8g0384421 26.891 357 236 8 62 408 131 472 1.01e-38 145
Msa0875630 MtrunA17_Chr7g0242701 30.163 368 216 13 60 408 82 427 1.23e-38 144
Msa0875630 MtrunA17_Chr5g0437291 28.219 365 236 10 62 412 163 515 2.47e-38 145
Msa0875630 MtrunA17_Chr1g0171171 28.212 358 225 10 56 408 45 375 6.46e-38 141
Msa0875630 MtrunA17_Chr5g0413851 32.410 361 206 15 57 412 35 362 7.74e-38 140
Msa0875630 MtrunA17_Chr2g0325481 28.367 349 206 11 64 404 50 362 2.15e-37 139
Msa0875630 MtrunA17_Chr3g0126021 27.494 411 234 14 35 415 90 466 3.46e-36 138
Msa0875630 MtrunA17_Chr1g0210771 27.557 352 216 9 62 404 57 378 3.72e-35 134
Msa0875630 MtrunA17_Chr4g0041011 27.273 352 216 10 64 409 47 364 1.02e-34 132
Msa0875630 MtrunA17_Chr4g0049421 26.575 365 228 10 64 408 48 392 4.29e-32 125
Msa0875630 MtrunA17_Chr2g0314791 28.329 353 209 13 64 408 29 345 9.49e-31 121
Msa0875630 MtrunA17_Chr1g0178081 27.882 373 186 14 55 413 43 346 1.21e-30 120
Msa0875630 MtrunA17_Chr1g0209921 29.555 247 150 8 59 300 39 266 5.42e-24 100
Msa0875630 MtrunA17_Chr7g0275501 46.032 63 31 2 347 407 7 68 1.12e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875630 AT5G15900.1 48.395 405 197 7 27 424 26 425 2.30e-144 418
Msa0875630 AT5G15900.2 48.395 405 197 7 27 424 45 444 3.99e-144 418
Msa0875630 AT3G02440.2 49.711 346 169 2 64 408 135 476 3.88e-135 397
Msa0875630 AT3G02440.1 49.711 346 169 2 64 408 127 468 4.43e-135 396
Msa0875630 AT5G15890.1 48.387 372 179 7 43 412 166 526 1.91e-134 396
Msa0875630 AT3G28150.1 39.943 348 199 5 64 408 70 410 2.30e-101 308
Msa0875630 AT1G01430.1 38.208 424 230 15 5 413 47 453 3.80e-97 298
Msa0875630 AT4G01080.1 40.347 404 207 11 16 405 44 427 1.54e-96 296
Msa0875630 AT4G23790.1 40.113 354 200 7 60 405 75 424 9.99e-95 291
Msa0875630 AT1G70230.1 40.974 349 186 7 64 408 79 411 2.31e-93 287
Msa0875630 AT4G11090.1 38.547 358 204 9 60 408 75 425 2.20e-89 278
Msa0875630 AT5G51640.1 33.799 358 217 6 64 408 138 488 2.73e-75 243
Msa0875630 AT4G25360.1 33.249 394 226 8 44 415 153 531 2.24e-73 239
Msa0875630 AT4G25360.2 33.249 394 226 8 44 415 153 531 2.24e-73 239
Msa0875630 AT5G19160.1 34.316 373 210 13 63 418 98 452 4.66e-57 194
Msa0875630 AT5G20590.1 31.793 368 215 12 62 414 139 485 5.10e-57 195
Msa0875630 AT3G06080.2 34.127 378 213 13 63 423 102 460 3.26e-56 192
Msa0875630 AT1G60790.1 32.708 373 219 12 51 408 177 532 3.89e-55 191
Msa0875630 AT3G62390.1 31.771 384 218 14 48 409 112 473 5.45e-52 181
Msa0875630 AT3G12060.1 30.602 415 232 14 36 424 167 551 8.64e-51 180
Msa0875630 AT5G06700.1 32.564 390 206 15 49 411 238 597 1.27e-50 180
Msa0875630 AT3G11030.1 31.302 361 218 12 62 408 104 448 1.57e-49 174
Msa0875630 AT5G06230.2 32.134 389 227 12 45 415 2 371 1.09e-48 170
Msa0875630 AT5G06230.1 32.134 389 227 12 45 415 43 412 2.70e-48 170
Msa0875630 AT5G49340.1 30.203 394 243 10 46 424 81 457 2.83e-48 171
Msa0875630 AT5G01620.2 30.663 362 220 10 60 408 106 449 6.39e-48 170
Msa0875630 AT5G01620.1 30.663 362 220 10 60 408 106 449 6.39e-48 170
Msa0875630 AT5G01620.3 30.663 362 220 10 60 408 114 457 1.22e-47 169
Msa0875630 AT1G73140.1 30.133 375 215 15 62 416 65 412 4.34e-47 167
Msa0875630 AT2G40320.1 29.945 364 225 10 58 408 76 422 1.33e-46 166
Msa0875630 AT3G11570.1 33.144 353 202 12 76 415 95 426 1.47e-45 163
Msa0875630 AT2G40150.1 29.661 354 228 8 64 404 71 416 2.16e-45 162
Msa0875630 AT3G55990.1 30.508 354 219 9 64 404 140 479 4.84e-45 163
Msa0875630 AT2G30010.1 30.270 370 204 13 64 408 56 396 2.09e-44 159
Msa0875630 AT2G38320.1 29.777 403 246 17 32 415 26 410 2.20e-44 159
Msa0875630 AT2G30010.2 30.270 370 204 13 64 408 99 439 2.98e-44 160
Msa0875630 AT2G30900.1 29.167 384 228 13 30 404 13 361 4.20e-44 158
Msa0875630 AT5G58600.1 29.692 357 217 13 64 408 66 400 5.36e-44 158
Msa0875630 AT2G40160.2 29.839 372 228 13 64 417 77 433 8.25e-44 159
Msa0875630 AT2G40160.1 30.303 363 220 13 64 408 77 424 1.59e-43 157
Msa0875630 AT2G14530.1 29.551 379 203 15 64 410 62 408 3.19e-43 156
Msa0875630 AT1G29050.1 28.729 362 213 12 58 410 55 380 4.32e-42 152
Msa0875630 AT5G64470.3 27.989 368 230 11 56 408 47 394 1.90e-41 151
Msa0875630 AT1G48880.1 31.250 352 208 9 64 408 115 439 1.95e-41 152
Msa0875630 AT5G64470.2 27.807 374 229 12 56 408 47 400 5.97e-41 150
Msa0875630 AT5G64020.1 28.158 380 210 11 64 408 57 408 1.47e-40 149
Msa0875630 AT2G34070.1 27.473 364 222 12 55 410 56 385 2.24e-40 148
Msa0875630 AT5G01360.2 29.477 363 218 12 64 408 36 378 5.06e-40 147
Msa0875630 AT3G14850.2 32.000 350 202 13 61 404 31 350 8.32e-40 146
Msa0875630 AT5G01360.1 29.477 363 218 12 64 408 92 434 9.32e-40 147
Msa0875630 AT2G38320.2 31.304 345 202 15 88 415 1 327 2.00e-39 144
Msa0875630 AT5G19160.2 34.553 246 146 6 63 301 98 335 3.63e-38 141
Msa0875630 AT3G06080.1 36.000 250 139 8 63 302 102 340 2.94e-37 139
Msa0875630 AT1G78710.1 28.412 359 214 13 58 408 33 356 4.77e-37 139
Msa0875630 AT2G42570.1 29.745 353 191 13 64 401 47 357 1.76e-35 134
Msa0875630 AT5G20680.6 26.142 394 228 14 42 408 100 457 5.90e-35 135
Msa0875630 AT5G20680.2 26.142 394 228 14 42 408 176 533 8.25e-35 135
Msa0875630 AT5G20680.4 26.142 394 228 14 42 408 194 551 9.09e-35 135
Msa0875630 AT5G20680.1 26.142 394 228 14 42 408 194 551 9.09e-35 135
Msa0875630 AT5G20680.3 26.142 394 228 14 42 408 194 551 9.09e-35 135
Msa0875630 AT5G20680.5 26.142 394 228 14 42 408 194 551 9.09e-35 135
Msa0875630 AT2G31110.2 27.456 397 229 16 27 406 5 359 1.39e-34 132
Msa0875630 AT5G20590.2 30.996 271 153 10 48 302 126 378 2.84e-33 129
Msa0875630 AT3G62390.2 31.884 276 155 10 48 303 112 374 5.09e-33 129
Msa0875630 AT2G37720.1 24.011 379 223 10 60 408 139 482 7.37e-31 124
Msa0875630 AT5G58600.2 30.738 244 142 10 64 300 66 289 1.34e-30 119
Msa0875630 AT5G06230.3 31.655 278 159 10 45 304 43 307 2.86e-30 119
Msa0875630 AT3G54260.1 25.568 352 219 9 64 404 51 370 3.27e-30 120
Msa0875630 AT5G64470.4 27.915 283 175 8 56 323 47 315 4.83e-30 119
Msa0875630 AT5G64470.1 28.014 282 174 8 56 322 47 314 8.75e-30 118
Msa0875630 AT2G40160.3 29.508 244 157 7 64 301 77 311 4.67e-28 113
Msa0875630 AT2G30900.2 29.104 268 167 8 30 294 13 260 2.07e-27 110
Msa0875630 AT2G31110.3 31.336 217 130 7 27 238 5 207 1.67e-23 99.8
Msa0875630 AT1G78710.2 46.465 99 49 3 58 155 26 121 9.18e-21 92.4
Msa0875630 AT3G14850.1 29.091 275 163 12 134 404 1 247 2.93e-16 78.6
Msa0875630 AT2G34070.2 24.561 285 173 12 134 410 1 251 2.09e-14 73.2

Find 103 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCAACTTTACACTAAAT+TGG 0.173915 6_1:+12283105 None:intergenic
TATAATCAGGATTCAAATTT+AGG 0.177994 6_1:+12282997 None:intergenic
ATAGCATGTCCATAGTTATT+AGG 0.217751 6_1:+12280334 None:intergenic
ACAGATCTTGCTCACTATTA+TGG 0.223711 6_1:-12280661 Msa0875630:CDS
TTCATTTCTTCCTTGCTAAA+TGG 0.245310 6_1:+12280496 None:intergenic
CTCATTGGTTTGAAACTTCA+TGG 0.249729 6_1:+12282256 None:intergenic
TCCTTTGATCTCACAAAATA+TGG 0.262668 6_1:+12280877 None:intergenic
TCACTATTATGGTTATAAAA+TGG 0.279964 6_1:-12280650 Msa0875630:CDS
ATATAAATGTTGGTAACTTT+TGG 0.283577 6_1:+12282320 None:intergenic
GCTTGTTAGAGGAAAGAAAA+TGG 0.294779 6_1:-12281877 Msa0875630:CDS
AAGGAAGAAATGAACTTAAA+TGG 0.302329 6_1:-12280487 Msa0875630:CDS
GAATGTCTTGATTATCATAT+TGG 0.311638 6_1:-12279958 Msa0875630:three_prime_UTR
GATCAATGATTGTTATAATC+AGG 0.318767 6_1:+12282984 None:intergenic
ACCATTATTGTTCTATGAAA+AGG 0.331402 6_1:-12280725 Msa0875630:CDS
TGCATTTGTTGTTAACTCTC+TGG 0.336282 6_1:+12282903 None:intergenic
CAATTCTTAGAGCTTGTTAG+AGG 0.346212 6_1:-12281888 Msa0875630:CDS
GTACAAAATCACACATCTTA+TGG 0.354994 6_1:-12280217 Msa0875630:CDS
ACCTCCGGTCGCAGCGATCT+TGG 0.361033 6_1:+12282864 None:intergenic
AAATTTAGTTGGCTATGAAT+TGG 0.361146 6_1:-12282595 Msa0875630:five_prime_UTR
ATGGTTATAAAATGGCATTT+AGG 0.361802 6_1:-12280642 Msa0875630:CDS
ATAGTGATTTAGCTATAATA+TGG 0.363074 6_1:-12282420 Msa0875630:five_prime_UTR
GAATTGGCTTGCAGCCATAA+AGG 0.365974 6_1:-12282579 Msa0875630:five_prime_UTR
CATGTTACATTGTTATAGTA+AGG 0.368127 6_1:+12282023 None:intergenic
ATTTCACCCTTGGAAATCTA+TGG 0.368885 6_1:-12280903 Msa0875630:CDS
GATGGACACCCTAATAACTA+TGG 0.373219 6_1:-12280343 Msa0875630:CDS
TTTAATTAATCAAATTTAGT+TGG 0.373530 6_1:-12282606 Msa0875630:five_prime_UTR
TAGCATGTCCATAGTTATTA+GGG 0.375427 6_1:+12280335 None:intergenic
TATGAAAAGGGTCAACTTGT+TGG 0.382238 6_1:-12280712 Msa0875630:CDS
TCCGATTACAATTTCACCCT+TGG 0.384026 6_1:-12280913 Msa0875630:CDS
TCCAAGGGTGAAATTGTAAT+CGG 0.396816 6_1:+12280912 None:intergenic
CTTCCCATTGAGAATCTCAT+TGG 0.397101 6_1:+12282241 None:intergenic
AGCGGAAGCTCGCATTCATT+TGG 0.399680 6_1:+12281924 None:intergenic
TTAAAGGAAGTAACTAAGAT+TGG 0.404227 6_1:+12282760 None:intergenic
GAACAAAATTGCATGAAGTT+TGG 0.409138 6_1:-12281984 Msa0875630:CDS
CAAACCAATGAGATTCTCAA+TGG 0.412007 6_1:-12282245 Msa0875630:CDS
TGGTTGATGCGATTCGGTTA+AGG 0.418466 6_1:-12283038 Msa0875630:five_prime_UTR
AACTCATTCCATGTATCAAC+AGG 0.425298 6_1:+12280259 None:intergenic
CCATTATTGTTCTATGAAAA+GGG 0.440204 6_1:-12280724 Msa0875630:CDS
AAACCAATTTAGTGTAAAGT+TGG 0.441737 6_1:-12283108 Msa0875630:five_prime_UTR
ATTAAGTGGTTGATGCGATT+CGG 0.449334 6_1:-12283044 Msa0875630:five_prime_UTR
TTTACAATGATTGTGTTCAT+TGG 0.450773 6_1:-12280294 Msa0875630:CDS
ATAACAATGTAACATGCAAA+TGG 0.453059 6_1:-12282016 Msa0875630:CDS
GTGTTTCTCATGAGAATAAG+AGG 0.453854 6_1:+12282152 None:intergenic
GAAACAGTTTATATAAATGT+TGG 0.456218 6_1:+12282310 None:intergenic
GATCATTACTTACTTGACTT+AGG 0.459746 6_1:+12281802 None:intergenic
TGTGTTCATTGGTGTTTACC+TGG 0.460600 6_1:-12280283 Msa0875630:CDS
ATCAACTTATTAGAATTAAG+TGG 0.460902 6_1:-12283058 Msa0875630:five_prime_UTR
GAGAATGGAGATTGGAACAA+AGG 0.466521 6_1:-12280541 Msa0875630:CDS
TTTGTTTAATATCTAACAAA+GGG 0.470039 6_1:+12282659 None:intergenic
TTGTATTTACACAAAGGGTA+GGG 0.471262 6_1:-12280084 Msa0875630:three_prime_UTR
AATTGGCTTGCAGCCATAAA+GGG 0.474031 6_1:-12282578 Msa0875630:five_prime_UTR
TTTGTATTTACACAAAGGGT+AGG 0.484973 6_1:-12280085 Msa0875630:three_prime_UTR
ATGGAGATTGGAACAAAGGA+GGG 0.486473 6_1:-12280537 Msa0875630:CDS
GGATGCAACAAATGTGGAAT+GGG 0.487487 6_1:-12280691 Msa0875630:CDS
AACAACAAAACAGAAACAAA+AGG 0.494374 6_1:-12282089 Msa0875630:CDS
GACATAGTGATCATTTCAGC+AGG 0.495703 6_1:-12280763 Msa0875630:CDS
CAATGAAGATACTCATCGTC+CGG 0.497505 6_1:+12281957 None:intergenic
TTGCATGAAGTTTGGTAGGC+CGG 0.498866 6_1:-12281976 Msa0875630:CDS
TAGTTATTAGGGTGTCCATC+AGG 0.500572 6_1:+12280346 None:intergenic
TACCTGGACCTGTTGATACA+TGG 0.501964 6_1:-12280267 Msa0875630:CDS
TCGGTTAAGGACAAATCGGT+TGG 0.506822 6_1:-12283025 Msa0875630:five_prime_UTR
ATGAGTATCTTCATTGGAGA+TGG 0.507725 6_1:-12281950 Msa0875630:CDS
AGCTAATGCTATTACACCTC+CGG 0.508322 6_1:+12282849 None:intergenic
CATTACTTACTTGACTTAGG+AGG 0.511465 6_1:+12281805 None:intergenic
ATGATGAGAAGAAGAGTGAA+TGG 0.519581 6_1:+12282179 None:intergenic
AAACCAATGAGATTCTCAAT+GGG 0.522804 6_1:-12282244 Msa0875630:CDS
CGATTCGGTTAAGGACAAAT+CGG 0.524985 6_1:-12283029 Msa0875630:five_prime_UTR
TTCCATGTATCAACAGGTCC+AGG 0.527258 6_1:+12280265 None:intergenic
CGGTTAAGGACAAATCGGTT+GGG 0.529417 6_1:-12283024 Msa0875630:five_prime_UTR
TGTATTTACACAAAGGGTAG+GGG 0.530133 6_1:-12280083 Msa0875630:three_prime_UTR
TGAATTTAAAGTAGCACAAG+AGG 0.532011 6_1:-12280431 Msa0875630:CDS
TAATAACTATGGACATGCTA+TGG 0.532374 6_1:-12280332 Msa0875630:CDS
CGGACGATGAGTATCTTCAT+TGG 0.534059 6_1:-12281956 Msa0875630:CDS
ATTTGTTTAATATCTAACAA+AGG 0.538903 6_1:+12282658 None:intergenic
CAAACGTCATATATTTCAAA+CGG 0.541619 6_1:-12280945 Msa0875630:CDS
CAAGAGGAAGCATCAAAGAA+AGG 0.542433 6_1:-12280415 Msa0875630:CDS
AAAATTGCATGAAGTTTGGT+AGG 0.545611 6_1:-12281980 Msa0875630:CDS
GCAACCAAGATCGCTGCGAC+CGG 0.546186 6_1:-12282868 Msa0875630:five_prime_UTR
TTAGTAATTTGAAGTTCAGA+CGG 0.547085 6_1:+12282945 None:intergenic
TGATCATTTCAGCAGGACAT+TGG 0.549563 6_1:-12280756 Msa0875630:CDS
ACTTGGATTCCTCATTCTGA+AGG 0.554794 6_1:-12282047 Msa0875630:CDS
TAGTAATTTGAAGTTCAGAC+GGG 0.563410 6_1:+12282946 None:intergenic
TATTTATGAGAAACGTCCTC+GGG 0.563517 6_1:+12280973 None:intergenic
TAGTAAGGTCCTTCAGAATG+AGG 0.564875 6_1:+12282038 None:intergenic
TCTCCATTCTCAAAATGTGA+TGG 0.565514 6_1:+12280553 None:intergenic
TGTTTGACAGAAGACATGTT+TGG 0.574096 6_1:+12282116 None:intergenic
AATGGAGATTGGAACAAAGG+AGG 0.579340 6_1:-12280538 Msa0875630:CDS
GTGTAAACAATCATGTATGC+AGG 0.583353 6_1:+12282823 None:intergenic
ATTATGTTGTTGAGACCTGA+TGG 0.586906 6_1:-12280361 Msa0875630:CDS
GTATTTATGAGAAACGTCCT+CGG 0.588809 6_1:+12280972 None:intergenic
ACCAAGATCGCTGCGACCGG+AGG 0.591682 6_1:-12282865 Msa0875630:five_prime_UTR
TGGATGCAACAAATGTGGAA+TGG 0.593431 6_1:-12280692 Msa0875630:CDS
ACAGAAGACATGTTTGGTGA+TGG 0.600714 6_1:+12282122 None:intergenic
CATGAAATTATATGTAGATG+AGG 0.602589 6_1:-12280821 Msa0875630:CDS
CTTGTTGGATGCAACAAATG+TGG 0.604356 6_1:-12280697 Msa0875630:CDS
AATTGAGTTGCATTAAAGAG+CGG 0.621842 6_1:+12281906 None:intergenic
TAGATGAGGTAGATGAAGCA+TGG 0.622571 6_1:-12280807 Msa0875630:CDS
TAATTTGAAGTTCAGACGGG+AGG 0.637849 6_1:+12282949 None:intergenic
TGGTGACCATAGATTTCCAA+GGG 0.647447 6_1:+12280897 None:intergenic
GAGGACAAAACCATTTAGCA+AGG 0.652106 6_1:-12280506 Msa0875630:CDS
ATGGTGACCATAGATTTCCA+AGG 0.658722 6_1:+12280896 None:intergenic
ACAAAGGAGGGAATTGTGTG+AGG 0.680099 6_1:-12280525 Msa0875630:CDS
GATGCAACAAATGTGGAATG+GGG 0.730726 6_1:-12280690 Msa0875630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAACATAATTAA+AGG + chr6_1:12280331-12280350 None:intergenic 10.0%
!! TTTAATTAATCAAATTTAGT+TGG - chr6_1:12280466-12280485 Msa0875630:CDS 10.0%
!!! AAATAGTATTCATAAATTTT+TGG - chr6_1:12281352-12281371 Msa0875630:intron 10.0%
!!! AATAGTATTCATAAATTTTT+GGG - chr6_1:12281353-12281372 Msa0875630:intron 10.0%
!! GATTAAAACTTACTAAAAAT+AGG + chr6_1:12279997-12280016 None:intergenic 15.0%
!!! TATGTTTTTTTCTTTCTAAA+AGG - chr6_1:12280336-12280355 Msa0875630:CDS 15.0%
!! TTTGTTTAATATCTAACAAA+GGG + chr6_1:12280416-12280435 None:intergenic 15.0%
!! ATTTGTTTAATATCTAACAA+AGG + chr6_1:12280417-12280436 None:intergenic 15.0%
!! ATGTTAAAAAAATGCAAAAT+GGG + chr6_1:12280445-12280464 None:intergenic 15.0%
!! TATGTTAAAAAAATGCAAAA+TGG + chr6_1:12280446-12280465 None:intergenic 15.0%
!!! AAAATTTTCAAGATTTGTTA+AGG + chr6_1:12282469-12282488 None:intergenic 15.0%
!!! ACAAATCTTGAAAATTTTAA+AGG - chr6_1:12282471-12282490 Msa0875630:five_prime_UTR 15.0%
!!! TGTTTATTATTTACTTTTTG+AGG - chr6_1:12282940-12282959 Msa0875630:five_prime_UTR 15.0%
!!! GTTTATTATTTACTTTTTGA+GGG - chr6_1:12282941-12282960 Msa0875630:five_prime_UTR 15.0%
!!! ATTTTTTTGTATTTACACAA+AGG - chr6_1:12282982-12283001 Msa0875630:five_prime_UTR 15.0%
!!! TTTTTTTGTATTTACACAAA+GGG - chr6_1:12282983-12283002 Msa0875630:five_prime_UTR 15.0%
!!! TGTAATTTTTGTATCATATT+TGG - chr6_1:12283089-12283108 Msa0875630:five_prime_UTR 15.0%
!! ATCAACTTATTAGAATTAAG+TGG - chr6_1:12280014-12280033 Msa0875630:three_prime_UTR 20.0%
!! TATAATCAGGATTCAAATTT+AGG + chr6_1:12280078-12280097 None:intergenic 20.0%
!!! TTTTCACTTTAATTTGACTA+AGG + chr6_1:12280533-12280552 None:intergenic 20.0%
!! ATAGTGATTTAGCTATAATA+TGG - chr6_1:12280652-12280671 Msa0875630:CDS 20.0%
!! GAATTAAAGAAAAAGTTGAA+AGG - chr6_1:12280705-12280724 Msa0875630:CDS 20.0%
!!! ATATAAATGTTGGTAACTTT+TGG + chr6_1:12280755-12280774 None:intergenic 20.0%
!! GAAACAGTTTATATAAATGT+TGG + chr6_1:12280765-12280784 None:intergenic 20.0%
!! CTAAATTAATCCATCTAAAT+TGG + chr6_1:12281453-12281472 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG + chr6_1:12281979-12281998 None:intergenic 20.0%
!! TCACTATTATGGTTATAAAA+TGG - chr6_1:12282422-12282441 Msa0875630:five_prime_UTR 20.0%
!!! AATTTTTGTATCATATTTGG+TGG - chr6_1:12283092-12283111 Msa0875630:five_prime_UTR 20.0%
! AAACCAATTTAGTGTAAAGT+TGG - chr6_1:12279964-12279983 Msa0875630:three_prime_UTR 25.0%
! AAACCAACTTTACACTAAAT+TGG + chr6_1:12279970-12279989 None:intergenic 25.0%
! GATCAATGATTGTTATAATC+AGG + chr6_1:12280091-12280110 None:intergenic 25.0%
!! TTAGTAATTTGAAGTTCAGA+CGG + chr6_1:12280130-12280149 None:intergenic 25.0%
! TTAAAGGAAGTAACTAAGAT+TGG + chr6_1:12280315-12280334 None:intergenic 25.0%
!!! TTTTTCACTCTTTGTTTAGT+AGG + chr6_1:12280373-12280392 None:intergenic 25.0%
! AAATTTAGTTGGCTATGAAT+TGG - chr6_1:12280477-12280496 Msa0875630:CDS 25.0%
!! AACTTTTGGTCTGATTTTTT+TGG + chr6_1:12280741-12280760 None:intergenic 25.0%
! AACAACAAAACAGAAACAAA+AGG - chr6_1:12280983-12281002 Msa0875630:CDS 25.0%
! CATGTTACATTGTTATAGTA+AGG + chr6_1:12281052-12281071 None:intergenic 25.0%
! ATAACAATGTAACATGCAAA+TGG - chr6_1:12281056-12281075 Msa0875630:intron 25.0%
!!! TTTTTTTTGTCAAGAGAGTA+GGG - chr6_1:12281309-12281328 Msa0875630:intron 25.0%
!!! GTATTCATAAATTTTTGGGT+TGG - chr6_1:12281357-12281376 Msa0875630:intron 25.0%
! GAAATGATTAACTAAGAAGA+AGG + chr6_1:12281686-12281705 None:intergenic 25.0%
! GTTATATTTCAAATCCAACT+TGG - chr6_1:12281749-12281768 Msa0875630:intron 25.0%
!! TTTTAGTCTCAAATTTACTG+TGG - chr6_1:12281930-12281949 Msa0875630:CDS 25.0%
! AAAATACACATAAGCATGTT+TGG + chr6_1:12282057-12282076 None:intergenic 25.0%
!! GTGTATTTTTCTCTTTTTTC+AGG - chr6_1:12282068-12282087 Msa0875630:CDS 25.0%
! CAAACGTCATATATTTCAAA+CGG - chr6_1:12282127-12282146 Msa0875630:CDS 25.0%
! CATGAAATTATATGTAGATG+AGG - chr6_1:12282251-12282270 Msa0875630:CDS 25.0%
! ACCATTATTGTTCTATGAAA+AGG - chr6_1:12282347-12282366 Msa0875630:five_prime_UTR 25.0%
! CCATTATTGTTCTATGAAAA+GGG - chr6_1:12282348-12282367 Msa0875630:five_prime_UTR 25.0%
! ATGGTTATAAAATGGCATTT+AGG - chr6_1:12282430-12282449 Msa0875630:five_prime_UTR 25.0%
!!! TTAAAGGTGTGACATTTTTT+AGG - chr6_1:12282487-12282506 Msa0875630:five_prime_UTR 25.0%
! AAGGAAGAAATGAACTTAAA+TGG - chr6_1:12282585-12282604 Msa0875630:five_prime_UTR 25.0%
! TTTACAATGATTGTGTTCAT+TGG - chr6_1:12282778-12282797 Msa0875630:five_prime_UTR 25.0%
! GAATGTCTTGATTATCATAT+TGG - chr6_1:12283114-12283133 Msa0875630:five_prime_UTR 25.0%
! TAGTAATTTGAAGTTCAGAC+GGG + chr6_1:12280129-12280148 None:intergenic 30.0%
! CAATTTTCATTGACCCTTTA+TGG + chr6_1:12280510-12280529 None:intergenic 30.0%
AAACCAATGAGATTCTCAAT+GGG - chr6_1:12280828-12280847 Msa0875630:CDS 30.0%
! TGGTACAAGAAAAACACTTT+TGG + chr6_1:12280876-12280895 None:intergenic 30.0%
GAACAAAATTGCATGAAGTT+TGG - chr6_1:12281088-12281107 Msa0875630:intron 30.0%
AAAATTGCATGAAGTTTGGT+AGG - chr6_1:12281092-12281111 Msa0875630:intron 30.0%
! AATTGAGTTGCATTAAAGAG+CGG + chr6_1:12281169-12281188 None:intergenic 30.0%
! GGAAAGAAAATGGTTTTTGT+TGG - chr6_1:12281205-12281224 Msa0875630:intron 30.0%
! TTTTTGTTGGAGATTCTGTT+GGG - chr6_1:12281218-12281237 Msa0875630:intron 30.0%
GATCATTACTTACTTGACTT+AGG + chr6_1:12281273-12281292 None:intergenic 30.0%
!!! GTTTTTTTTGTCAAGAGAGT+AGG - chr6_1:12281308-12281327 Msa0875630:intron 30.0%
!!! TTTTTTTGTCAAGAGAGTAG+GGG - chr6_1:12281310-12281329 Msa0875630:intron 30.0%
ATGAAAAAACCTTGATGTCA+CGG + chr6_1:12281533-12281552 None:intergenic 30.0%
!!! TTTTCATCACTGATTTGTGA+TGG - chr6_1:12281554-12281573 Msa0875630:intron 30.0%
AGAGAACAAGGATAAAAACA+AGG + chr6_1:12281649-12281668 None:intergenic 30.0%
AAGAAGAAGGATACAATCAA+GGG + chr6_1:12281673-12281692 None:intergenic 30.0%
TAAGAAGAAGGATACAATCA+AGG + chr6_1:12281674-12281693 None:intergenic 30.0%
!! GAATGTTTGGTTTCACATTT+TGG - chr6_1:12281773-12281792 Msa0875630:intron 30.0%
! CTTCAAGTTAGAATCAATTC+TGG + chr6_1:12281877-12281896 None:intergenic 30.0%
TCTAACTTGAAGCTAGAATT+TGG - chr6_1:12281885-12281904 Msa0875630:CDS 30.0%
! ACCATATTTTGTGAGATCAA+AGG - chr6_1:12282194-12282213 Msa0875630:CDS 30.0%
TCCTTTGATCTCACAAAATA+TGG + chr6_1:12282198-12282217 None:intergenic 30.0%
! CCCTTTTCATAGAACAATAA+TGG + chr6_1:12282351-12282370 None:intergenic 30.0%
TTCATTTCTTCCTTGCTAAA+TGG + chr6_1:12282579-12282598 None:intergenic 30.0%
! TGAATTTAAAGTAGCACAAG+AGG - chr6_1:12282641-12282660 Msa0875630:five_prime_UTR 30.0%
TAGCATGTCCATAGTTATTA+GGG + chr6_1:12282740-12282759 None:intergenic 30.0%
ATAGCATGTCCATAGTTATT+AGG + chr6_1:12282741-12282760 None:intergenic 30.0%
TAATAACTATGGACATGCTA+TGG - chr6_1:12282740-12282759 Msa0875630:five_prime_UTR 30.0%
GTACAAAATCACACATCTTA+TGG - chr6_1:12282855-12282874 Msa0875630:five_prime_UTR 30.0%
TTTGTATTTACACAAAGGGT+AGG - chr6_1:12282987-12283006 Msa0875630:five_prime_UTR 30.0%
TTGTATTTACACAAAGGGTA+GGG - chr6_1:12282988-12283007 Msa0875630:five_prime_UTR 30.0%
! ATTAAGTGGTTGATGCGATT+CGG - chr6_1:12280028-12280047 Msa0875630:three_prime_UTR 35.0%
!! TGCATTTGTTGTTAACTCTC+TGG + chr6_1:12280172-12280191 None:intergenic 35.0%
GTGTAAACAATCATGTATGC+AGG + chr6_1:12280252-12280271 None:intergenic 35.0%
!! CTCATTGGTTTGAAACTTCA+TGG + chr6_1:12280819-12280838 None:intergenic 35.0%
CAAACCAATGAGATTCTCAA+TGG - chr6_1:12280827-12280846 Msa0875630:CDS 35.0%
ATGATGAGAAGAAGAGTGAA+TGG + chr6_1:12280896-12280915 None:intergenic 35.0%
GTGTTTCTCATGAGAATAAG+AGG + chr6_1:12280923-12280942 None:intergenic 35.0%
TGTTTGACAGAAGACATGTT+TGG + chr6_1:12280959-12280978 None:intergenic 35.0%
! AAAGGATGTGACATCTTTTC+TGG - chr6_1:12281001-12281020 Msa0875630:intron 35.0%
ATGAGTATCTTCATTGGAGA+TGG - chr6_1:12281122-12281141 Msa0875630:intron 35.0%
!! CAATTCTTAGAGCTTGTTAG+AGG - chr6_1:12281184-12281203 Msa0875630:intron 35.0%
! GCTTGTTAGAGGAAAGAAAA+TGG - chr6_1:12281195-12281214 Msa0875630:intron 35.0%
! GTTTTTGTTGGAGATTCTGT+TGG - chr6_1:12281217-12281236 Msa0875630:intron 35.0%
CATTACTTACTTGACTTAGG+AGG + chr6_1:12281270-12281289 None:intergenic 35.0%
TAATCCATCTAAATTGGCAC+CGG + chr6_1:12281447-12281466 None:intergenic 35.0%
TGTAATTCTCCGCATTATCT+AGG - chr6_1:12281597-12281616 Msa0875630:intron 35.0%
! AATCCAACTTGGTGAATGTT+TGG - chr6_1:12281760-12281779 Msa0875630:intron 35.0%
AAACCAAACATTCACCAAGT+TGG + chr6_1:12281766-12281785 None:intergenic 35.0%
!! TGTTTGGTTTCACATTTTGG+AGG - chr6_1:12281776-12281795 Msa0875630:intron 35.0%
CAAGTTAGAATCAATTCTGG+AGG + chr6_1:12281874-12281893 None:intergenic 35.0%
TATTTATGAGAAACGTCCTC+GGG + chr6_1:12282102-12282121 None:intergenic 35.0%
GTATTTATGAGAAACGTCCT+CGG + chr6_1:12282103-12282122 None:intergenic 35.0%
TCCAAGGGTGAAATTGTAAT+CGG + chr6_1:12282163-12282182 None:intergenic 35.0%
ATTTCACCCTTGGAAATCTA+TGG - chr6_1:12282169-12282188 Msa0875630:CDS 35.0%
TCAAAGGATGCTGACAAAAA+TGG - chr6_1:12282210-12282229 Msa0875630:CDS 35.0%
TATGAAAAGGGTCAACTTGT+TGG - chr6_1:12282360-12282379 Msa0875630:five_prime_UTR 35.0%
ACAGATCTTGCTCACTATTA+TGG - chr6_1:12282411-12282430 Msa0875630:five_prime_UTR 35.0%
!! TCTCCATCACATTTTGAGAA+TGG - chr6_1:12282516-12282535 Msa0875630:five_prime_UTR 35.0%
TCTCCATTCTCAAAATGTGA+TGG + chr6_1:12282522-12282541 None:intergenic 35.0%
!! CACATTTTGAGAATGGAGAT+TGG - chr6_1:12282523-12282542 Msa0875630:five_prime_UTR 35.0%
ATTATGTTGTTGAGACCTGA+TGG - chr6_1:12282711-12282730 Msa0875630:five_prime_UTR 35.0%
AACTCATTCCATGTATCAAC+AGG + chr6_1:12282816-12282835 None:intergenic 35.0%
TGTATTTACACAAAGGGTAG+GGG - chr6_1:12282989-12283008 Msa0875630:five_prime_UTR 35.0%
!! CGATTCGGTTAAGGACAAAT+CGG - chr6_1:12280043-12280062 Msa0875630:three_prime_UTR 40.0%
! TAATTTGAAGTTCAGACGGG+AGG + chr6_1:12280126-12280145 None:intergenic 40.0%
!!! GTTAACTCTCTGGTTTTCTC+TGG + chr6_1:12280162-12280181 None:intergenic 40.0%
AGCTAATGCTATTACACCTC+CGG + chr6_1:12280226-12280245 None:intergenic 40.0%
!! AATTGGCTTGCAGCCATAAA+GGG - chr6_1:12280494-12280513 Msa0875630:CDS 40.0%
CTTCCCATTGAGAATCTCAT+TGG + chr6_1:12280834-12280853 None:intergenic 40.0%
! ACAGAAGACATGTTTGGTGA+TGG + chr6_1:12280953-12280972 None:intergenic 40.0%
!! GTGACATCTTTTCTGGTACT+TGG - chr6_1:12281008-12281027 Msa0875630:intron 40.0%
ACTTGGATTCCTCATTCTGA+AGG - chr6_1:12281025-12281044 Msa0875630:intron 40.0%
TAGTAAGGTCCTTCAGAATG+AGG + chr6_1:12281037-12281056 None:intergenic 40.0%
CAATGAAGATACTCATCGTC+CGG + chr6_1:12281118-12281137 None:intergenic 40.0%
!!! AAATTTTTGGGTTGGCCTGA+TGG - chr6_1:12281365-12281384 Msa0875630:intron 40.0%
AATCCATCTAAATTGGCACC+GGG + chr6_1:12281446-12281465 None:intergenic 40.0%
GGTTGCATTCCTAGATAATG+CGG + chr6_1:12281609-12281628 None:intergenic 40.0%
ATTATCTAGGAATGCAACCG+TGG - chr6_1:12281610-12281629 Msa0875630:intron 40.0%
ACAATCAAGGGAAGAGAACA+AGG + chr6_1:12281661-12281680 None:intergenic 40.0%
!! TGTTGATGATGTTGTCTGCA+TGG - chr6_1:12281727-12281746 Msa0875630:intron 40.0%
!! TTGGTTTCACATTTTGGAGG+AGG - chr6_1:12281779-12281798 Msa0875630:intron 40.0%
! GGAGGAAAAATTGACTCTAG+AGG - chr6_1:12281797-12281816 Msa0875630:intron 40.0%
!! CATAAGCATGTTTGGTTCTG+CGG + chr6_1:12282049-12282068 None:intergenic 40.0%
TCCGATTACAATTTCACCCT+TGG - chr6_1:12282159-12282178 Msa0875630:CDS 40.0%
TGGTGACCATAGATTTCCAA+GGG + chr6_1:12282178-12282197 None:intergenic 40.0%
ATGGTGACCATAGATTTCCA+AGG + chr6_1:12282179-12282198 None:intergenic 40.0%
TAGATGAGGTAGATGAAGCA+TGG - chr6_1:12282265-12282284 Msa0875630:exon 40.0%
GACATAGTGATCATTTCAGC+AGG - chr6_1:12282309-12282328 Msa0875630:five_prime_UTR 40.0%
TGATCATTTCAGCAGGACAT+TGG - chr6_1:12282316-12282335 Msa0875630:five_prime_UTR 40.0%
CTTGTTGGATGCAACAAATG+TGG - chr6_1:12282375-12282394 Msa0875630:five_prime_UTR 40.0%
TGGATGCAACAAATGTGGAA+TGG - chr6_1:12282380-12282399 Msa0875630:five_prime_UTR 40.0%
GGATGCAACAAATGTGGAAT+GGG - chr6_1:12282381-12282400 Msa0875630:five_prime_UTR 40.0%
GATGCAACAAATGTGGAATG+GGG - chr6_1:12282382-12282401 Msa0875630:five_prime_UTR 40.0%
GAGAATGGAGATTGGAACAA+AGG - chr6_1:12282531-12282550 Msa0875630:five_prime_UTR 40.0%
AATGGAGATTGGAACAAAGG+AGG - chr6_1:12282534-12282553 Msa0875630:five_prime_UTR 40.0%
ATGGAGATTGGAACAAAGGA+GGG - chr6_1:12282535-12282554 Msa0875630:five_prime_UTR 40.0%
GAGGACAAAACCATTTAGCA+AGG - chr6_1:12282566-12282585 Msa0875630:five_prime_UTR 40.0%
!! CAAGAGGAAGCATCAAAGAA+AGG - chr6_1:12282657-12282676 Msa0875630:five_prime_UTR 40.0%
! TAGTTATTAGGGTGTCCATC+AGG + chr6_1:12282729-12282748 None:intergenic 40.0%
GATGGACACCCTAATAACTA+TGG - chr6_1:12282729-12282748 Msa0875630:five_prime_UTR 40.0%
! TGTGTTCATTGGTGTTTACC+TGG - chr6_1:12282789-12282808 Msa0875630:five_prime_UTR 40.0%
!! TGGTTGATGCGATTCGGTTA+AGG - chr6_1:12280034-12280053 Msa0875630:three_prime_UTR 45.0%
TCGGTTAAGGACAAATCGGT+TGG - chr6_1:12280047-12280066 Msa0875630:three_prime_UTR 45.0%
CGGTTAAGGACAAATCGGTT+GGG - chr6_1:12280048-12280067 Msa0875630:three_prime_UTR 45.0%
!!! TCTGGTTTTCTCTGGAGAAG+AGG + chr6_1:12280154-12280173 None:intergenic 45.0%
!! GAATTGGCTTGCAGCCATAA+AGG - chr6_1:12280493-12280512 Msa0875630:CDS 45.0%
TTGCATGAAGTTTGGTAGGC+CGG - chr6_1:12281096-12281115 Msa0875630:intron 45.0%
CGGACGATGAGTATCTTCAT+TGG - chr6_1:12281116-12281135 Msa0875630:intron 45.0%
AGTCTCAAGCCAATACCATC+AGG + chr6_1:12281383-12281402 None:intergenic 45.0%
ATCCATCTAAATTGGCACCG+GGG + chr6_1:12281445-12281464 None:intergenic 45.0%
!!! AAGGTTTTGAATCGCAGCCA+CGG + chr6_1:12281630-12281649 None:intergenic 45.0%
ACAAAGGAGGGAATTGTGTG+AGG - chr6_1:12282547-12282566 Msa0875630:five_prime_UTR 45.0%
TACCTGGACCTGTTGATACA+TGG - chr6_1:12282805-12282824 Msa0875630:five_prime_UTR 45.0%
TTCCATGTATCAACAGGTCC+AGG + chr6_1:12282810-12282829 None:intergenic 45.0%
AGCGGAAGCTCGCATTCATT+TGG + chr6_1:12281151-12281170 None:intergenic 50.0%
!! TTGGGTTGGCCTGATGGTAT+TGG - chr6_1:12281371-12281390 Msa0875630:intron 50.0%
! TGAGAGTGTGCTTCTCCTCG+AGG - chr6_1:12281403-12281422 Msa0875630:intron 55.0%
GAATCGAACCTGAGACCTCG+AGG + chr6_1:12281421-12281440 None:intergenic 55.0%
GTCTCAGGTTCGATTCTCCC+CGG - chr6_1:12281425-12281444 Msa0875630:intron 55.0%
! CTCCCCGGTGCCAATTTAGA+TGG - chr6_1:12281440-12281459 Msa0875630:intron 55.0%
CGACTTGAGCCGTGACATCA+AGG - chr6_1:12281521-12281540 Msa0875630:intron 55.0%
!! TTTTCAGGCGTCTCAACCCG+AGG - chr6_1:12282083-12282102 Msa0875630:CDS 55.0%
GCAACCAAGATCGCTGCGAC+CGG - chr6_1:12280204-12280223 Msa0875630:CDS 60.0%
GTGCTTCTCCTCGAGGTCTC+AGG - chr6_1:12281410-12281429 Msa0875630:intron 60.0%
CACGGCTCAAGTCGCAGTCA+CGG + chr6_1:12281515-12281534 None:intergenic 60.0%
ACCAAGATCGCTGCGACCGG+AGG - chr6_1:12280207-12280226 Msa0875630:CDS 65.0%
ACCTCCGGTCGCAGCGATCT+TGG + chr6_1:12280211-12280230 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 12279941 12283153 12279941 ID=Msa0875630;Name=Msa0875630
chr6_1 mRNA 12279941 12283153 12279941 ID=Msa0875630-mRNA-1;Parent=Msa0875630;Name=Msa0875630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=877|1|1|1|1|1|2|251|424
chr6_1 exon 12279941 12281004 12279941 ID=Msa0875630-mRNA-1:exon:3702;Parent=Msa0875630-mRNA-1
chr6_1 exon 12281815 12283153 12281815 ID=Msa0875630-mRNA-1:exon:3701;Parent=Msa0875630-mRNA-1
chr6_1 five_prime_UTR 12282277 12283153 12282277 ID=Msa0875630-mRNA-1:five_prime_utr;Parent=Msa0875630-mRNA-1
chr6_1 CDS 12281815 12282276 12281815 ID=Msa0875630-mRNA-1:cds;Parent=Msa0875630-mRNA-1
chr6_1 CDS 12280192 12281004 12280192 ID=Msa0875630-mRNA-1:cds;Parent=Msa0875630-mRNA-1
chr6_1 three_prime_UTR 12279941 12280191 12279941 ID=Msa0875630-mRNA-1:three_prime_utr;Parent=Msa0875630-mRNA-1
Gene Sequence

>Msa0875630

ATGAAGTTTCAAACCAATGAGATTCTCAATGGGAAGTACACAACAAGAAAAACAACCAAAAGTGTTTTTCTTGTACCATTCACTCTTCTTCTCATCATGTTTCCTCTTATTCTCATGAGAAACACAGATGAACCATCACCAAACATGTCTTCTGTCAAACACTTGAACAACAAAACAGAAACAAAAGGATGTGACATCTTTTCTGGTACTTGGATTCCTCATTCTGAAGGACCTTACTATAACAATGTAACATGCAAATGGATGATTGATGAACAAAATTGCATGAAGTTTGGTAGGCCGGACGATGAGTATCTTCATTGGAGATGGAAACCAAATGAATGCGAGCTTCCGCTCTTTAATGCAACTCAATTCTTAGAGCTTGTTAGAGGAAAGAAAATGGTTTTTGTTGGAGATTCTGTTGGGAGAAATCAGTTGCAATCTTTGTTGTGCCTCCTAAGTCAAGCGTCTCAACCCGAGGACGTTTCTCATAAATACACAACAAACGTCATATATTTCAAACGGTATTTCTTCTCCGATTACAATTTCACCCTTGGAAATCTATGGTCACCATATTTTGTGAGATCAAAGGATGCTGACAAAAATGGTCATTCATACAACAGCATCATGAAATTATATGTAGATGAGGTAGATGAAGCATGGTCTAGTCAAGTTGAAAACTTTGACATAGTGATCATTTCAGCAGGACATTGGTTTTTTAGACCATTATTGTTCTATGAAAAGGGTCAACTTGTTGGATGCAACAAATGTGGAATGGGGAATGTAACAGATCTTGCTCACTATTATGGTTATAAAATGGCATTTAGGACTGCATTTAAAACCTTAACAAATCTTGAAAATTTTAAAGGTGTGACATTTTTTAGGACATTTTCTCCATCACATTTTGAGAATGGAGATTGGAACAAAGGAGGGAATTGTGTGAGGACAAAACCATTTAGCAAGGAAGAAATGAACTTAAATGGTTACATTCTAGAGACATATTTAACACAAGTGAATGAATTTAAAGTAGCACAAGAGGAAGCATCAAAGAAAGGTTTGAAATTTTTGATGCTTAATACAACTGAAATTATGTTGTTGAGACCTGATGGACACCCTAATAACTATGGACATGCTATGGTAAAAAATGTGACATTTTACAATGATTGTGTTCATTGGTGTTTACCTGGACCTGTTGATACATGGAATGAGTTTTTGCTATATATGTTGAATGTACAAAATCACACATCTTATGGTTCAAAGCTAGAGAGTGTTTTATGA

Protein sequence

>Msa0875630

MKFQTNEILNGKYTTRKTTKSVFLVPFTLLLIMFPLILMRNTDEPSPNMSSVKHLNNKTETKGCDIFSGTWIPHSEGPYYNNVTCKWMIDEQNCMKFGRPDDEYLHWRWKPNECELPLFNATQFLELVRGKKMVFVGDSVGRNQLQSLLCLLSQASQPEDVSHKYTTNVIYFKRYFFSDYNFTLGNLWSPYFVRSKDADKNGHSYNSIMKLYVDEVDEAWSSQVENFDIVIISAGHWFFRPLLFYEKGQLVGCNKCGMGNVTDLAHYYGYKMAFRTAFKTLTNLENFKGVTFFRTFSPSHFENGDWNKGGNCVRTKPFSKEEMNLNGYILETYLTQVNEFKVAQEEASKKGLKFLMLNTTEIMLLRPDGHPNNYGHAMVKNVTFYNDCVHWCLPGPVDTWNEFLLYMLNVQNHTSYGSKLESVL*