Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479940 | XP_013462148.1 | 81.597 | 576 | 39 | 5 | 11 | 528 | 4 | 570 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479940 | sp|F4JVA6|SFH6_ARATH | 52.843 | 598 | 206 | 6 | 12 | 535 | 16 | 611 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479940 | A0A072V497 | 81.597 | 576 | 39 | 5 | 11 | 528 | 4 | 570 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377010 | Msa0479940 | 0.885083 | 1.103256e-71 | -8.615850e-47 |
| Msa0384540 | Msa0479940 | 0.857174 | 1.953248e-62 | -8.615850e-47 |
| Msa0435000 | Msa0479940 | 0.938724 | 4.192083e-99 | -8.615850e-47 |
| Msa0479040 | Msa0479940 | 0.944414 | 2.037960e-103 | -8.615850e-47 |
| Msa0479090 | Msa0479940 | 0.963978 | 9.434497e-123 | -8.615850e-47 |
| Msa0479940 | Msa0579350 | 0.807699 | 4.448243e-50 | -8.615850e-47 |
| Msa0479940 | Msa0614990 | 0.804372 | 2.229165e-49 | -8.615850e-47 |
| Msa0479940 | Msa0709670 | 0.924470 | 6.746461e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479940 | MtrunA17_Chr3g0141821 | 81.597 | 576 | 39 | 5 | 11 | 528 | 4 | 570 | 0.0 | 868 |
| Msa0479940 | MtrunA17_Chr1g0155521 | 60.535 | 598 | 152 | 7 | 14 | 527 | 18 | 615 | 0.0 | 684 |
| Msa0479940 | MtrunA17_Chr4g0035391 | 50.250 | 601 | 204 | 11 | 14 | 527 | 18 | 610 | 0.0 | 538 |
| Msa0479940 | MtrunA17_Chr3g0144911 | 60.331 | 363 | 92 | 2 | 14 | 324 | 18 | 380 | 6.92e-155 | 449 |
| Msa0479940 | MtrunA17_Chr8g0372651 | 43.455 | 573 | 203 | 12 | 25 | 519 | 13 | 542 | 3.24e-133 | 398 |
| Msa0479940 | MtrunA17_Chr3g0144891 | 43.630 | 573 | 213 | 11 | 20 | 519 | 20 | 555 | 6.52e-127 | 382 |
| Msa0479940 | MtrunA17_Chr5g0404711 | 55.937 | 320 | 86 | 3 | 31 | 301 | 10 | 323 | 1.27e-122 | 368 |
| Msa0479940 | MtrunA17_Chr5g0404711 | 40.789 | 76 | 45 | 0 | 453 | 528 | 397 | 472 | 2.93e-11 | 65.9 |
| Msa0479940 | MtrunA17_Chr7g0236461 | 37.311 | 595 | 274 | 18 | 11 | 526 | 6 | 580 | 4.22e-113 | 348 |
| Msa0479940 | MtrunA17_Chr4g0035361 | 43.522 | 494 | 170 | 15 | 100 | 519 | 1 | 459 | 1.18e-107 | 330 |
| Msa0479940 | MtrunA17_Chr3g0080051 | 36.230 | 610 | 289 | 13 | 13 | 527 | 8 | 612 | 2.21e-102 | 321 |
| Msa0479940 | MtrunA17_Chr8g0369291 | 35.478 | 575 | 276 | 13 | 37 | 527 | 33 | 596 | 5.63e-90 | 288 |
| Msa0479940 | MtrunA17_Chr4g0035381 | 48.718 | 273 | 87 | 2 | 71 | 290 | 48 | 320 | 2.73e-85 | 269 |
| Msa0479940 | MtrunA17_Chr5g0399151 | 43.728 | 279 | 111 | 1 | 59 | 291 | 74 | 352 | 7.36e-78 | 252 |
| Msa0479940 | MtrunA17_Chr3g0144901 | 47.059 | 187 | 67 | 5 | 373 | 527 | 4 | 190 | 4.28e-34 | 127 |
| Msa0479940 | MtrunA17_Chr7g0243541 | 30.769 | 169 | 106 | 6 | 100 | 264 | 116 | 277 | 3.28e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479940 | AT4G39170.1 | 52.843 | 598 | 206 | 6 | 12 | 535 | 16 | 611 | 0.0 | 577 |
| Msa0479940 | AT2G21520.2 | 51.797 | 612 | 201 | 10 | 6 | 527 | 17 | 624 | 0.0 | 573 |
| Msa0479940 | AT2G21520.3 | 51.797 | 612 | 201 | 10 | 6 | 527 | 17 | 624 | 0.0 | 573 |
| Msa0479940 | AT2G21520.1 | 51.797 | 612 | 201 | 10 | 6 | 527 | 13 | 620 | 0.0 | 572 |
| Msa0479940 | AT4G39170.2 | 52.676 | 598 | 205 | 7 | 12 | 535 | 16 | 609 | 0.0 | 570 |
| Msa0479940 | AT1G75370.1 | 49.585 | 603 | 214 | 13 | 12 | 532 | 16 | 610 | 1.16e-159 | 468 |
| Msa0479940 | AT1G19650.1 | 47.404 | 597 | 220 | 11 | 15 | 527 | 16 | 602 | 4.86e-159 | 466 |
| Msa0479940 | AT1G75370.2 | 49.669 | 604 | 214 | 13 | 12 | 533 | 16 | 611 | 1.05e-158 | 468 |
| Msa0479940 | AT2G21540.6 | 44.872 | 546 | 229 | 8 | 20 | 519 | 18 | 537 | 2.29e-144 | 427 |
| Msa0479940 | AT2G21540.2 | 44.872 | 546 | 229 | 8 | 20 | 519 | 18 | 537 | 2.29e-144 | 427 |
| Msa0479940 | AT2G21540.1 | 44.872 | 546 | 229 | 8 | 20 | 519 | 18 | 537 | 2.29e-144 | 427 |
| Msa0479940 | AT2G21540.4 | 44.872 | 546 | 229 | 8 | 20 | 519 | 18 | 537 | 2.29e-144 | 427 |
| Msa0479940 | AT2G21540.3 | 44.872 | 546 | 223 | 7 | 20 | 519 | 18 | 531 | 3.44e-144 | 426 |
| Msa0479940 | AT2G21540.5 | 44.872 | 546 | 223 | 7 | 20 | 519 | 18 | 531 | 3.44e-144 | 426 |
| Msa0479940 | AT4G36490.1 | 44.607 | 547 | 220 | 12 | 29 | 519 | 12 | 531 | 1.79e-142 | 422 |
| Msa0479940 | AT4G34580.2 | 45.196 | 562 | 215 | 13 | 21 | 519 | 11 | 542 | 6.10e-142 | 421 |
| Msa0479940 | AT4G34580.1 | 45.196 | 562 | 215 | 13 | 21 | 519 | 11 | 542 | 6.10e-142 | 421 |
| Msa0479940 | AT1G19650.2 | 47.348 | 509 | 183 | 8 | 97 | 527 | 29 | 530 | 6.07e-139 | 412 |
| Msa0479940 | AT2G18180.2 | 43.310 | 568 | 194 | 14 | 30 | 519 | 17 | 534 | 9.08e-139 | 412 |
| Msa0479940 | AT2G18180.1 | 43.310 | 568 | 194 | 14 | 30 | 519 | 17 | 534 | 1.91e-138 | 412 |
| Msa0479940 | AT4G39180.1 | 42.207 | 571 | 213 | 13 | 20 | 519 | 18 | 542 | 6.12e-135 | 403 |
| Msa0479940 | AT4G39180.3 | 41.958 | 572 | 212 | 13 | 20 | 519 | 18 | 541 | 8.95e-135 | 402 |
| Msa0479940 | AT4G39180.2 | 41.958 | 572 | 212 | 13 | 20 | 519 | 18 | 541 | 8.95e-135 | 402 |
| Msa0479940 | AT1G19650.3 | 58.036 | 336 | 86 | 4 | 15 | 298 | 16 | 348 | 9.15e-124 | 370 |
| Msa0479940 | AT2G16380.2 | 40.964 | 581 | 220 | 15 | 20 | 525 | 9 | 541 | 2.43e-123 | 373 |
| Msa0479940 | AT2G16380.1 | 40.964 | 581 | 220 | 15 | 20 | 525 | 9 | 541 | 2.43e-123 | 373 |
| Msa0479940 | AT3G24840.7 | 39.442 | 573 | 244 | 11 | 20 | 524 | 23 | 560 | 2.76e-119 | 363 |
| Msa0479940 | AT3G24840.3 | 39.442 | 573 | 244 | 11 | 20 | 524 | 23 | 560 | 2.76e-119 | 363 |
| Msa0479940 | AT3G24840.5 | 39.442 | 573 | 244 | 11 | 20 | 524 | 23 | 560 | 2.76e-119 | 363 |
| Msa0479940 | AT3G24840.1 | 40.497 | 563 | 231 | 11 | 20 | 514 | 23 | 549 | 5.95e-119 | 363 |
| Msa0479940 | AT3G24840.6 | 40.497 | 563 | 231 | 11 | 20 | 514 | 23 | 549 | 5.95e-119 | 363 |
| Msa0479940 | AT3G24840.4 | 40.497 | 563 | 231 | 11 | 20 | 514 | 23 | 549 | 5.95e-119 | 363 |
| Msa0479940 | AT3G24840.2 | 40.497 | 563 | 231 | 11 | 20 | 514 | 23 | 549 | 5.95e-119 | 363 |
| Msa0479940 | AT2G18180.4 | 41.935 | 496 | 168 | 11 | 101 | 519 | 11 | 463 | 7.76e-118 | 356 |
| Msa0479940 | AT2G18180.3 | 41.935 | 496 | 168 | 11 | 101 | 519 | 11 | 463 | 1.52e-117 | 356 |
| Msa0479940 | AT2G18180.5 | 41.127 | 479 | 162 | 11 | 118 | 519 | 1 | 436 | 2.50e-109 | 333 |
| Msa0479940 | AT5G56160.1 | 34.896 | 576 | 283 | 11 | 23 | 527 | 19 | 573 | 2.76e-94 | 299 |
| Msa0479940 | AT5G56160.3 | 34.896 | 576 | 283 | 11 | 23 | 527 | 19 | 573 | 2.76e-94 | 299 |
| Msa0479940 | AT2G16380.3 | 39.203 | 477 | 180 | 12 | 118 | 525 | 1 | 436 | 5.22e-93 | 291 |
| Msa0479940 | AT1G55690.3 | 49.258 | 337 | 115 | 5 | 13 | 301 | 22 | 350 | 2.95e-92 | 295 |
| Msa0479940 | AT1G55690.2 | 49.258 | 337 | 115 | 5 | 13 | 301 | 22 | 350 | 4.07e-92 | 295 |
| Msa0479940 | AT1G55690.4 | 49.258 | 337 | 115 | 5 | 13 | 301 | 22 | 350 | 4.07e-92 | 295 |
| Msa0479940 | AT1G55690.1 | 49.258 | 337 | 115 | 5 | 13 | 301 | 22 | 350 | 4.07e-92 | 295 |
| Msa0479940 | AT1G55690.5 | 49.258 | 337 | 115 | 5 | 13 | 301 | 22 | 350 | 4.07e-92 | 295 |
| Msa0479940 | AT5G56160.2 | 45.482 | 332 | 126 | 4 | 23 | 304 | 19 | 345 | 1.83e-91 | 289 |
| Msa0479940 | AT5G47510.2 | 44.922 | 256 | 95 | 1 | 78 | 287 | 29 | 284 | 8.78e-75 | 241 |
| Msa0479940 | AT5G47510.1 | 44.922 | 256 | 95 | 1 | 78 | 287 | 28 | 283 | 2.16e-74 | 241 |
| Msa0479940 | AT5G47510.4 | 44.922 | 256 | 95 | 1 | 78 | 287 | 29 | 284 | 2.47e-74 | 241 |
| Msa0479940 | AT5G47510.3 | 43.805 | 226 | 81 | 1 | 108 | 287 | 2 | 227 | 2.93e-64 | 213 |
Find 112 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATCTTTGAAGTAGTTT+TGG | 0.227191 | 3_3:+85120520 | None:intergenic |
| TGAATGTTCCATTAGGTTCT+TGG | 0.246980 | 3_3:-85120391 | Msa0479940:intron |
| GGAAAACCTTTAAAATGTTT+TGG | 0.274087 | 3_3:+85120153 | None:intergenic |
| GTCTTGCCATGGCCCTTTAT+CGG | 0.290544 | 3_3:+85120175 | None:intergenic |
| TTGTTCGAACAAAGGCAAAA+AGG | 0.292384 | 3_3:+85119335 | None:intergenic |
| GGGGTTTGGCTTTGTGAATC+TGG | 0.297857 | 3_3:+85119267 | None:intergenic |
| TAAATGCATCATGCAAATTA+AGG | 0.298711 | 3_3:-85122100 | Msa0479940:CDS |
| AACCATGTGGATAGTACTTC+TGG | 0.304122 | 3_3:+85121434 | None:intergenic |
| CATAGAATTCCCACATGCTT+TGG | 0.329438 | 3_3:+85119780 | None:intergenic |
| AATGAGACAAGAAGAACTTT+TGG | 0.329773 | 3_3:-85118912 | Msa0479940:CDS |
| GGCTGTATGACATCCGATAA+AGG | 0.337655 | 3_3:-85120188 | Msa0479940:CDS |
| CAACTACCGCCTAGAAATTC+TGG | 0.341995 | 3_3:+85120230 | None:intergenic |
| CTTGGACATGAGTCAGTATA+GGG | 0.349834 | 3_3:+85119755 | None:intergenic |
| GATGATAAGTGGAAAAGAAT+TGG | 0.351511 | 3_3:-85122143 | Msa0479940:CDS |
| AGTTACTTGCATAAGCCTAT+TGG | 0.352097 | 3_3:+85121351 | None:intergenic |
| GTGTGACAAAGGGAGTAAAA+AGG | 0.353499 | 3_3:-85119303 | Msa0479940:CDS |
| GTTACTTGCATAAGCCTATT+GGG | 0.369599 | 3_3:+85121352 | None:intergenic |
| GGATGCAGAAAATCTGCTTT+TGG | 0.376361 | 3_3:-85119392 | Msa0479940:intron |
| AGTGAGCTACCAGAATTTCT+AGG | 0.380292 | 3_3:-85120239 | Msa0479940:CDS |
| TACCATAGTCTTTCCTCCAT+TGG | 0.380545 | 3_3:+85121618 | None:intergenic |
| GGTGCTGCTTGCTTCTCCTT+TGG | 0.389658 | 3_3:+85119546 | None:intergenic |
| CCTAGCCTCTCAATATAAAC+AGG | 0.390737 | 3_3:+85121385 | None:intergenic |
| ATAGAATTCCCACATGCTTT+GGG | 0.391941 | 3_3:+85119781 | None:intergenic |
| TCTTGGACATGAGTCAGTAT+AGG | 0.395958 | 3_3:+85119754 | None:intergenic |
| AGCAGCTCCTCTTTCTCACT+TGG | 0.399254 | 3_3:+85119166 | None:intergenic |
| CGAAACTCATTTGGCTCAAA+AGG | 0.401215 | 3_3:-85119522 | Msa0479940:intron |
| GTAGAAGATGAGGAGGGGTT+TGG | 0.414982 | 3_3:+85119253 | None:intergenic |
| CTAGGCAAGATTTGTTGATA+AGG | 0.428115 | 3_3:-85119640 | Msa0479940:intron |
| GCAAGATTTGTTGATAAGGT+TGG | 0.435405 | 3_3:-85119636 | Msa0479940:CDS |
| GAAACACTACTGATTATAGT+AGG | 0.436443 | 3_3:-85122194 | Msa0479940:CDS |
| TCAAGGTAAGTCAAAAGTTA+AGG | 0.439797 | 3_3:-85118859 | Msa0479940:CDS |
| CTCCTCTTTCTCACTTGGCA+TGG | 0.452012 | 3_3:+85119171 | None:intergenic |
| AAGCTCACTGAGGCGTTTCA+AGG | 0.453754 | 3_3:+85119231 | None:intergenic |
| TACTATCCACATGGTTATCA+TGG | 0.455469 | 3_3:-85121427 | Msa0479940:CDS |
| GCAGCACCACGAAACTCATT+TGG | 0.462925 | 3_3:-85119531 | Msa0479940:CDS |
| TTTATCATCAATGCTGGTCC+TGG | 0.464243 | 3_3:-85120584 | Msa0479940:CDS |
| AAAAGTGGCTGTACATCTAC+TGG | 0.471399 | 3_3:-85119836 | Msa0479940:CDS |
| ATCCAATGGAGGAAAGACTA+TGG | 0.472951 | 3_3:-85121620 | Msa0479940:CDS |
| TTTGAGCCAAATGAGTTTCG+TGG | 0.473382 | 3_3:+85119525 | None:intergenic |
| GTTGATAAGGTTGGTCATAC+CGG | 0.475173 | 3_3:-85119627 | Msa0479940:CDS |
| GGTAACCAGGACTGTTACAG+TGG | 0.476374 | 3_3:-85119371 | Msa0479940:CDS |
| GTCGAACATCCTCAATGGAC+AGG | 0.479812 | 3_3:+85122024 | None:intergenic |
| ATGACTATCATATGTTATTG+AGG | 0.481600 | 3_3:-85121926 | Msa0479940:intron |
| TTGAGAAAGCAAAGCTTATG+TGG | 0.482104 | 3_3:-85121652 | Msa0479940:CDS |
| GCTGTATGACATCCGATAAA+GGG | 0.483951 | 3_3:-85120187 | Msa0479940:CDS |
| GATGAGTTCTCGAGCAGACT+TGG | 0.484272 | 3_3:+85120944 | None:intergenic |
| TCGTAACAATTTCCAACGAC+GGG | 0.488552 | 3_3:-85119994 | Msa0479940:CDS |
| AGAGTTCAGAGGATGATAAG+TGG | 0.489773 | 3_3:-85122154 | Msa0479940:CDS |
| ATCAATAATCTTGTCAACCA+TGG | 0.500918 | 3_3:+85119575 | None:intergenic |
| TAGGAAAAGTTGATCCCAAT+AGG | 0.504043 | 3_3:-85121366 | Msa0479940:CDS |
| TGCCATGCCAAGTGAGAAAG+AGG | 0.504746 | 3_3:-85119173 | Msa0479940:CDS |
| GTTGACAAGATTATTGATGT+TGG | 0.506685 | 3_3:-85119570 | Msa0479940:CDS |
| TTTCCTCCATTGGATCATGT+TGG | 0.513399 | 3_3:+85121628 | None:intergenic |
| TATAATCAGTAGTGTTTCAA+AGG | 0.520512 | 3_3:+85122199 | None:intergenic |
| TGATAGTCATCATGTATTGA+AGG | 0.523730 | 3_3:+85121939 | None:intergenic |
| AACTTGTCGAACATCCTCAA+TGG | 0.528444 | 3_3:+85122019 | None:intergenic |
| CCTGTTTATATTGAGAGGCT+AGG | 0.536718 | 3_3:-85121385 | Msa0479940:CDS |
| GTTGTAGATTCTTGAAAGCA+AGG | 0.537683 | 3_3:-85121685 | Msa0479940:intron |
| ATTCCCACATGCTTTGGGAG+GGG | 0.539349 | 3_3:+85119786 | None:intergenic |
| CAAATGTTTATCATCAATGC+TGG | 0.541743 | 3_3:-85120590 | Msa0479940:CDS |
| TGGTACAGATACAATTATAG+AGG | 0.554834 | 3_3:-85121600 | Msa0479940:intron |
| TGAGGATGTTCGACAAGTTG+AGG | 0.556408 | 3_3:-85122015 | Msa0479940:CDS |
| TGGTTATCATGGTGTGGACA+AGG | 0.560676 | 3_3:-85121416 | Msa0479940:CDS |
| ATAGCATTTCGTGTGACAAA+GGG | 0.564103 | 3_3:-85119313 | Msa0479940:CDS |
| AATAGCATTTCGTGTGACAA+AGG | 0.565114 | 3_3:-85119314 | Msa0479940:CDS |
| TCAATAATCTTGTCAACCAT+GGG | 0.565693 | 3_3:+85119576 | None:intergenic |
| GATTATTGATGTTGGACCAA+AGG | 0.573610 | 3_3:-85119562 | Msa0479940:CDS |
| TTTGGCATACATAGACAGTC+GGG | 0.579008 | 3_3:-85118894 | Msa0479940:CDS |
| AGAGCTCATTGCTACAAAGA+AGG | 0.579053 | 3_3:-85119107 | Msa0479940:intron |
| GCAGCAAAAGTAGTGGCAGT+AGG | 0.581849 | 3_3:-85122055 | Msa0479940:CDS |
| AATTCCCACATGCTTTGGGA+GGG | 0.583608 | 3_3:+85119785 | None:intergenic |
| GGAACATATTCATCATACTC+AGG | 0.584478 | 3_3:+85119597 | None:intergenic |
| GAAGACCTGTTTATATTGAG+AGG | 0.585453 | 3_3:-85121390 | Msa0479940:CDS |
| GCGTTTCAAGGTAGAAGATG+AGG | 0.585982 | 3_3:+85119243 | None:intergenic |
| GAATTCCCACATGCTTTGGG+AGG | 0.588746 | 3_3:+85119784 | None:intergenic |
| GATGCCCACTGTAACAGTCC+TGG | 0.590148 | 3_3:+85119366 | None:intergenic |
| AAATGCTATTGTTCGAACAA+AGG | 0.593799 | 3_3:+85119327 | None:intergenic |
| TGCATGCAGATGGTTCTTAG+TGG | 0.596223 | 3_3:-85120040 | Msa0479940:intron |
| TGTGGGCCAACATGATCCAA+TGG | 0.599513 | 3_3:-85121634 | Msa0479940:CDS |
| GAGCAATTCCCTGTCCATTG+AGG | 0.600815 | 3_3:-85122033 | Msa0479940:CDS |
| TACTTGAGATTATCGATGCG+AGG | 0.602427 | 3_3:-85120348 | Msa0479940:intron |
| AGTTTATCGTGTGGATGCAT+TGG | 0.603746 | 3_3:-85119134 | Msa0479940:CDS |
| ATCGTAACAATTTCCAACGA+CGG | 0.608081 | 3_3:-85119995 | Msa0479940:CDS |
| TCCTAAACAGGCTTTGTACG+AGG | 0.609326 | 3_3:-85118939 | Msa0479940:intron |
| GATAAGGTTGGTCATACCGG+TGG | 0.614668 | 3_3:-85119624 | Msa0479940:CDS |
| TGACATCCGATAAAGGGCCA+TGG | 0.616150 | 3_3:-85120181 | Msa0479940:CDS |
| TTCAAGGTAGAAGATGAGGA+GGG | 0.616304 | 3_3:+85119247 | None:intergenic |
| TCAAGGTAGAAGATGAGGAG+GGG | 0.617122 | 3_3:+85119248 | None:intergenic |
| AAAAGAAGCAGCAAAAGTAG+TGG | 0.618855 | 3_3:-85122062 | Msa0479940:CDS |
| TCCACATGGTTATCATGGTG+TGG | 0.619712 | 3_3:-85121422 | Msa0479940:CDS |
| TCGAACATCCTCAATGGACA+GGG | 0.623693 | 3_3:+85122025 | None:intergenic |
| ATCATACTCAGGAAAACCAC+CGG | 0.629075 | 3_3:+85119608 | None:intergenic |
| TGAAAGAAGAGAGAGTTCAG+AGG | 0.630165 | 3_3:-85122165 | Msa0479940:CDS |
| ATATCCCCTCCCAAAGCATG+TGG | 0.636033 | 3_3:-85119790 | Msa0479940:CDS |
| TTTCAAGGTAGAAGATGAGG+AGG | 0.637871 | 3_3:+85119246 | None:intergenic |
| TGAGAAAGCAAAGCTTATGT+GGG | 0.641603 | 3_3:-85121651 | Msa0479940:CDS |
| TTCCATAGAAGCTTAAAACC+AGG | 0.645111 | 3_3:+85120566 | None:intergenic |
| TATCATGGTGTGGACAAGGA+GGG | 0.652614 | 3_3:-85121412 | Msa0479940:CDS |
| TAATCTCAAGTAATTTACTG+TGG | 0.654334 | 3_3:+85120359 | None:intergenic |
| GTATGATGAATATGTTCCCA+TGG | 0.657630 | 3_3:-85119592 | Msa0479940:CDS |
| CGTAACAATTTCCAACGACG+GGG | 0.667892 | 3_3:-85119993 | Msa0479940:CDS |
| GTAACCAGGACTGTTACAGT+GGG | 0.670798 | 3_3:-85119370 | Msa0479940:CDS |
| TGCACCTGTGTAGATCATGA+TGG | 0.672539 | 3_3:-85120209 | Msa0479940:CDS |
| GTCCAGAAGTACTATCCACA+TGG | 0.674124 | 3_3:-85121436 | Msa0479940:CDS |
| TATCCCCTCCCAAAGCATGT+GGG | 0.680862 | 3_3:-85119789 | Msa0479940:CDS |
| TTATCATGGTGTGGACAAGG+AGG | 0.685438 | 3_3:-85121413 | Msa0479940:CDS |
| GAATGCTGCAGTTTATCGTG+TGG | 0.686694 | 3_3:-85119143 | Msa0479940:CDS |
| GGGCCAACATGATCCAATGG+AGG | 0.693515 | 3_3:-85121631 | Msa0479940:CDS |
| ACAGCCATCATGATCTACAC+AGG | 0.695056 | 3_3:+85120205 | None:intergenic |
| GTAACAATTTCCAACGACGG+GGG | 0.703576 | 3_3:-85119992 | Msa0479940:CDS |
| TCCACACCATGATAACCATG+TGG | 0.713264 | 3_3:+85121421 | None:intergenic |
| GAGCTACCAGAATTTCTAGG+CGG | 0.787653 | 3_3:-85120236 | Msa0479940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATTTAAAATTAATA+TGG | + | chr3_3:85120121-85120140 | None:intergenic | 0.0% |
| !!! | ATATTAATTTTAAATTAATT+AGG | - | chr3_3:85120120-85120139 | Msa0479940:intron | 0.0% |
| !!! | AATTTTTCAATTAATTTTCA+TGG | + | chr3_3:85119290-85119309 | None:intergenic | 10.0% |
| !!! | AATTAATTGAAAAATTGTTT+TGG | - | chr3_3:85119294-85119313 | Msa0479940:CDS | 10.0% |
| !!! | CTTTTTTTTTTTTTCATATT+TGG | - | chr3_3:85119627-85119646 | Msa0479940:CDS | 10.0% |
| !!! | TTATTCTTTTTCATGAATTT+AGG | - | chr3_3:85118857-85118876 | Msa0479940:CDS | 15.0% |
| !!! | ATTTTTATAAGATTCCATTG+AGG | - | chr3_3:85120688-85120707 | Msa0479940:intron | 20.0% |
| !! | TATTTCAGGAAAATACATAA+GGG | + | chr3_3:85120720-85120739 | None:intergenic | 20.0% |
| !! | TTATTTCAGGAAAATACATA+AGG | + | chr3_3:85120721-85120740 | None:intergenic | 20.0% |
| !! | TTTCAAATCATCATTATTTC+AGG | + | chr3_3:85120734-85120753 | None:intergenic | 20.0% |
| !! | TTCCACTTATTATTAATCAT+AGG | - | chr3_3:85121012-85121031 | Msa0479940:intron | 20.0% |
| !! | ATCCTATGATTAATAATAAG+TGG | + | chr3_3:85121017-85121036 | None:intergenic | 20.0% |
| !!! | TACTATAATCCTTTGAATTT+TGG | - | chr3_3:85121271-85121290 | Msa0479940:intron | 20.0% |
| !!! | TATTTAGGTTCCATTTATAT+TGG | - | chr3_3:85121676-85121695 | Msa0479940:CDS | 20.0% |
| !!! | TTAAGAACTTCTTTAACTTT+AGG | - | chr3_3:85122122-85122141 | Msa0479940:CDS | 20.0% |
| ! | TATAATCAGTAGTGTTTCAA+AGG | + | chr3_3:85118950-85118969 | None:intergenic | 25.0% |
| ! | TAAATGCATCATGCAAATTA+AGG | - | chr3_3:85119046-85119065 | Msa0479940:intron | 25.0% |
| ! | ATGACTATCATATGTTATTG+AGG | - | chr3_3:85119220-85119239 | Msa0479940:CDS | 25.0% |
| !!! | TACTATGGTTTTTTCTCTAT+AGG | - | chr3_3:85119661-85119680 | Msa0479940:intron | 25.0% |
| !!! | TCTATAGGATTTTGATTTCA+AGG | - | chr3_3:85119676-85119695 | Msa0479940:intron | 25.0% |
| ! | TTAGAGCTTCAATTAAATCA+TGG | + | chr3_3:85120014-85120033 | None:intergenic | 25.0% |
| ! | TCAGTTACATATCTTAAATG+AGG | + | chr3_3:85120517-85120536 | None:intergenic | 25.0% |
| !!! | TGAATCTTTGAAGTAGTTTT+GGG | + | chr3_3:85120628-85120647 | None:intergenic | 25.0% |
| !!! | ATGAATCTTTGAAGTAGTTT+TGG | + | chr3_3:85120629-85120648 | None:intergenic | 25.0% |
| ! | TTGAAATTGAATGTTCCATT+AGG | - | chr3_3:85120748-85120767 | Msa0479940:intron | 25.0% |
| ! | TAATCTCAAGTAATTTACTG+TGG | + | chr3_3:85120790-85120809 | None:intergenic | 25.0% |
| !!! | GGAAAACCTTTAAAATGTTT+TGG | + | chr3_3:85120996-85121015 | None:intergenic | 25.0% |
| !! | TGATAAAACATCTTTTCCAA+AGG | - | chr3_3:85121192-85121211 | Msa0479940:intron | 25.0% |
| ! | GTGATAGTACATTAATTACA+AGG | - | chr3_3:85121423-85121442 | Msa0479940:CDS | 25.0% |
| ! | ATAGGTTTATACTACAGATT+AGG | - | chr3_3:85121652-85121671 | Msa0479940:CDS | 25.0% |
| ! | TACTACAGATTAGGATATTT+AGG | - | chr3_3:85121661-85121680 | Msa0479940:CDS | 25.0% |
| ! | TGTTTGACATCCAATATAAA+TGG | + | chr3_3:85121689-85121708 | None:intergenic | 25.0% |
| ! | CAGTCATTAAAGAATCTTTA+TGG | - | chr3_3:85121728-85121747 | Msa0479940:intron | 25.0% |
| ! | ATTAAAGAATCTTTATGGCA+TGG | - | chr3_3:85121733-85121752 | Msa0479940:intron | 25.0% |
| ! | GAAACACTACTGATTATAGT+AGG | - | chr3_3:85118952-85118971 | Msa0479940:intron | 30.0% |
| GATGATAAGTGGAAAAGAAT+TGG | - | chr3_3:85119003-85119022 | Msa0479940:intron | 30.0% | |
| TGATAGTCATCATGTATTGA+AGG | + | chr3_3:85119210-85119229 | None:intergenic | 30.0% | |
| ACATAGCAAGTAAAGCATAA+TGG | + | chr3_3:85119253-85119272 | None:intergenic | 30.0% | |
| GCTTATGAAAACTTATCTAC+TGG | + | chr3_3:85119354-85119373 | None:intergenic | 30.0% | |
| ATGAATATGCAAAGAGATCT+AGG | + | chr3_3:85119390-85119409 | None:intergenic | 30.0% | |
| GTATGATATTGCATATTGAC+TGG | - | chr3_3:85119411-85119430 | Msa0479940:intron | 30.0% | |
| TGGTACAGATACAATTATAG+AGG | - | chr3_3:85119546-85119565 | Msa0479940:CDS | 30.0% | |
| ! | TTGGTGTTCATACTATACTA+TGG | - | chr3_3:85119646-85119665 | Msa0479940:intron | 30.0% |
| GTATCTCAAATATCTTTCCA+TGG | + | chr3_3:85119822-85119841 | None:intergenic | 30.0% | |
| ! | ACAACAATTTTGGATGTTCA+AGG | - | chr3_3:85119922-85119941 | Msa0479940:intron | 30.0% |
| TTGAAACCCTATAAAGCAAA+GGG | + | chr3_3:85120174-85120193 | None:intergenic | 30.0% | |
| ! | TTTGAAACCCTATAAAGCAA+AGG | + | chr3_3:85120175-85120194 | None:intergenic | 30.0% |
| TCTCTTATTCTACATACTTC+AGG | + | chr3_3:85120261-85120280 | None:intergenic | 30.0% | |
| ! | TTAGACATAGTTCCTTGTTT+AGG | + | chr3_3:85120448-85120467 | None:intergenic | 30.0% |
| CAAATGTTTATCATCAATGC+TGG | - | chr3_3:85120556-85120575 | Msa0479940:CDS | 30.0% | |
| !! | TCAACATTTGGTTCTGTTAT+TGG | - | chr3_3:85120825-85120844 | Msa0479940:intron | 30.0% |
| ! | GCAAGACCAAAACATTTTAA+AGG | - | chr3_3:85120987-85121006 | Msa0479940:intron | 30.0% |
| ATTCATACTACATCTTAACC+TGG | - | chr3_3:85121035-85121054 | Msa0479940:intron | 30.0% | |
| GAAATGAAAAACTGTACCTT+TGG | + | chr3_3:85121211-85121230 | None:intergenic | 30.0% | |
| ACTCAGTAACCAAAATTCAA+AGG | + | chr3_3:85121283-85121302 | None:intergenic | 30.0% | |
| !!! | AACTGTTTTTATACTCGTCT+AGG | - | chr3_3:85121488-85121507 | Msa0479940:intron | 30.0% |
| TCAATAATCTTGTCAACCAT+GGG | + | chr3_3:85121573-85121592 | None:intergenic | 30.0% | |
| ATCAATAATCTTGTCAACCA+TGG | + | chr3_3:85121574-85121593 | None:intergenic | 30.0% | |
| GTTGACAAGATTATTGATGT+TGG | - | chr3_3:85121576-85121595 | Msa0479940:intron | 30.0% | |
| AAATGCTATTGTTCGAACAA+AGG | + | chr3_3:85121822-85121841 | None:intergenic | 30.0% | |
| ! | AATGAGACAAGAAGAACTTT+TGG | - | chr3_3:85122234-85122253 | Msa0479940:exon | 30.0% |
| TCAAGGTAAGTCAAAAGTTA+AGG | - | chr3_3:85122287-85122306 | Msa0479940:five_prime_UTR | 30.0% | |
| AAAAGAAGCAGCAAAAGTAG+TGG | - | chr3_3:85119084-85119103 | Msa0479940:intron | 35.0% | |
| ! | TGATATTGCATATTGACTGG+TGG | - | chr3_3:85119414-85119433 | Msa0479940:intron | 35.0% |
| GTTGTAGATTCTTGAAAGCA+AGG | - | chr3_3:85119461-85119480 | Msa0479940:intron | 35.0% | |
| TTGAGAAAGCAAAGCTTATG+TGG | - | chr3_3:85119494-85119513 | Msa0479940:intron | 35.0% | |
| TGAGAAAGCAAAGCTTATGT+GGG | - | chr3_3:85119495-85119514 | Msa0479940:intron | 35.0% | |
| TACTATCCACATGGTTATCA+TGG | - | chr3_3:85119719-85119738 | Msa0479940:intron | 35.0% | |
| GAAGACCTGTTTATATTGAG+AGG | - | chr3_3:85119756-85119775 | Msa0479940:intron | 35.0% | |
| ! | TAGGAAAAGTTGATCCCAAT+AGG | - | chr3_3:85119780-85119799 | Msa0479940:CDS | 35.0% |
| GTTACTTGCATAAGCCTATT+GGG | + | chr3_3:85119797-85119816 | None:intergenic | 35.0% | |
| AGTTACTTGCATAAGCCTAT+TGG | + | chr3_3:85119798-85119817 | None:intergenic | 35.0% | |
| ! | ATATTTGAGATACCATGTGC+AGG | - | chr3_3:85119829-85119848 | Msa0479940:CDS | 35.0% |
| ! | TATTTGAGATACCATGTGCA+GGG | - | chr3_3:85119830-85119849 | Msa0479940:CDS | 35.0% |
| AACATCCAAAATTGTTGTGC+TGG | + | chr3_3:85119920-85119939 | None:intergenic | 35.0% | |
| GTTTAGATTGACAGTGAGTA+TGG | - | chr3_3:85119972-85119991 | Msa0479940:CDS | 35.0% | |
| TGGACTAATGGTGAATTTAG+CGG | + | chr3_3:85120054-85120073 | None:intergenic | 35.0% | |
| TCTTCTTCCCTTTGCTTTAT+AGG | - | chr3_3:85120164-85120183 | Msa0479940:CDS | 35.0% | |
| CTTCTTCCCTTTGCTTTATA+GGG | - | chr3_3:85120165-85120184 | Msa0479940:CDS | 35.0% | |
| TTCCATAGAAGCTTAAAACC+AGG | + | chr3_3:85120583-85120602 | None:intergenic | 35.0% | |
| TGAATGTTCCATTAGGTTCT+TGG | - | chr3_3:85120755-85120774 | Msa0479940:intron | 35.0% | |
| ACTTGTTTCCAAGAACCTAA+TGG | + | chr3_3:85120766-85120785 | None:intergenic | 35.0% | |
| !!! | AAAATGTTTTGGTCTTGCCA+TGG | + | chr3_3:85120985-85121004 | None:intergenic | 35.0% |
| !! | CTACATCTTAACCTGGTTTT+TGG | - | chr3_3:85121042-85121061 | Msa0479940:intron | 35.0% |
| ATCGTAACAATTTCCAACGA+CGG | - | chr3_3:85121151-85121170 | Msa0479940:intron | 35.0% | |
| !!! | GAATTTTGGTTACTGAGTAC+AGG | - | chr3_3:85121285-85121304 | Msa0479940:intron | 35.0% |
| ATAGAATTCCCACATGCTTT+GGG | + | chr3_3:85121368-85121387 | None:intergenic | 35.0% | |
| !! | CTAGGCAAGATTTGTTGATA+AGG | - | chr3_3:85121506-85121525 | Msa0479940:intron | 35.0% |
| !! | GCAAGATTTGTTGATAAGGT+TGG | - | chr3_3:85121510-85121529 | Msa0479940:intron | 35.0% |
| GGAACATATTCATCATACTC+AGG | + | chr3_3:85121552-85121571 | None:intergenic | 35.0% | |
| GTATGATGAATATGTTCCCA+TGG | - | chr3_3:85121554-85121573 | Msa0479940:intron | 35.0% | |
| GATTATTGATGTTGGACCAA+AGG | - | chr3_3:85121584-85121603 | Msa0479940:intron | 35.0% | |
| !! | AAAATCTGCTTTTGGTAACC+AGG | - | chr3_3:85121762-85121781 | Msa0479940:intron | 35.0% |
| TGTTCGAACAAAGGCAAAAA+GGG | + | chr3_3:85121813-85121832 | None:intergenic | 35.0% | |
| TTGTTCGAACAAAGGCAAAA+AGG | + | chr3_3:85121814-85121833 | None:intergenic | 35.0% | |
| AATAGCATTTCGTGTGACAA+AGG | - | chr3_3:85121832-85121851 | Msa0479940:intron | 35.0% | |
| ATAGCATTTCGTGTGACAAA+GGG | - | chr3_3:85121833-85121852 | Msa0479940:intron | 35.0% | |
| TGTGACAAAGGGAGTAAAAA+GGG | - | chr3_3:85121844-85121863 | Msa0479940:intron | 35.0% | |
| !!! | CATTTTTTTCAAGCTCACTG+AGG | + | chr3_3:85121928-85121947 | None:intergenic | 35.0% |
| AGAAGTTCTTAACAATGACG+TGG | + | chr3_3:85122114-85122133 | None:intergenic | 35.0% | |
| GCATGTTCAATTTCCTAAAC+AGG | - | chr3_3:85122195-85122214 | Msa0479940:CDS | 35.0% | |
| ! | TTTTGGCATACATAGACAGT+CGG | - | chr3_3:85122251-85122270 | Msa0479940:five_prime_UTR | 35.0% |
| TCGGGAAAAAAGCAAATTCA+AGG | - | chr3_3:85122270-85122289 | Msa0479940:five_prime_UTR | 35.0% | |
| TGAAAGAAGAGAGAGTTCAG+AGG | - | chr3_3:85118981-85119000 | Msa0479940:intron | 40.0% | |
| AGAGTTCAGAGGATGATAAG+TGG | - | chr3_3:85118992-85119011 | Msa0479940:intron | 40.0% | |
| AACTTGTCGAACATCCTCAA+TGG | + | chr3_3:85119130-85119149 | None:intergenic | 40.0% | |
| TTTCCTCCATTGGATCATGT+TGG | + | chr3_3:85119521-85119540 | None:intergenic | 40.0% | |
| ATCCAATGGAGGAAAGACTA+TGG | - | chr3_3:85119526-85119545 | Msa0479940:CDS | 40.0% | |
| TACCATAGTCTTTCCTCCAT+TGG | + | chr3_3:85119531-85119550 | None:intergenic | 40.0% | |
| AACCATGTGGATAGTACTTC+TGG | + | chr3_3:85119715-85119734 | None:intergenic | 40.0% | |
| CCTAGCCTCTCAATATAAAC+AGG | + | chr3_3:85119764-85119783 | None:intergenic | 40.0% | |
| CCTGTTTATATTGAGAGGCT+AGG | - | chr3_3:85119761-85119780 | Msa0479940:intron | 40.0% | |
| GCTTATGCAAGTAACTACCA+TGG | - | chr3_3:85119802-85119821 | Msa0479940:CDS | 40.0% | |
| ! | TTTTCTCAAAACCCTGCACA+TGG | + | chr3_3:85119844-85119863 | None:intergenic | 40.0% |
| TATAGCTGCAAGAGACACAT+AGG | - | chr3_3:85119892-85119911 | Msa0479940:intron | 40.0% | |
| ! | AGGTTCCAGCACAACAATTT+TGG | - | chr3_3:85119912-85119931 | Msa0479940:intron | 40.0% |
| ! | AATTTTGGATGTTCAAGGCG+TGG | - | chr3_3:85119927-85119946 | Msa0479940:intron | 40.0% |
| CAGTGAGTATGGCTTAATCA+TGG | - | chr3_3:85119983-85120002 | Msa0479940:CDS | 40.0% | |
| TGAGTATGGCTTAATCATGG+CGG | - | chr3_3:85119986-85120005 | Msa0479940:CDS | 40.0% | |
| AGTGCATGACTTTGGACTAA+TGG | + | chr3_3:85120066-85120085 | None:intergenic | 40.0% | |
| GTCCAAAGTCATGCACTAAA+TGG | - | chr3_3:85120069-85120088 | Msa0479940:intron | 40.0% | |
| AGCCATTTAGTGCATGACTT+TGG | + | chr3_3:85120074-85120093 | None:intergenic | 40.0% | |
| TTGAGAAGCTCACCTAAACA+AGG | - | chr3_3:85120433-85120452 | Msa0479940:intron | 40.0% | |
| TTTATCATCAATGCTGGTCC+TGG | - | chr3_3:85120562-85120581 | Msa0479940:CDS | 40.0% | |
| !!! | GTCCTGGTTTTAAGCTTCTA+TGG | - | chr3_3:85120578-85120597 | Msa0479940:CDS | 40.0% |
| CATAAGGGTTCTTACCTCAA+TGG | + | chr3_3:85120705-85120724 | None:intergenic | 40.0% | |
| TACTTGAGATTATCGATGCG+AGG | - | chr3_3:85120798-85120817 | Msa0479940:intron | 40.0% | |
| ATGCGAGGTAACTCAACATT+TGG | - | chr3_3:85120813-85120832 | Msa0479940:intron | 40.0% | |
| AGTGAGCTACCAGAATTTCT+AGG | - | chr3_3:85120907-85120926 | Msa0479940:CDS | 40.0% | |
| GCTGTATGACATCCGATAAA+GGG | - | chr3_3:85120959-85120978 | Msa0479940:CDS | 40.0% | |
| GCAAAGTAGAACCAAAAACC+AGG | + | chr3_3:85121056-85121075 | None:intergenic | 40.0% | |
| AATAGTTGTCTGCATGCAGA+TGG | - | chr3_3:85121096-85121115 | Msa0479940:intron | 40.0% | |
| TCGTAACAATTTCCAACGAC+GGG | - | chr3_3:85121152-85121171 | Msa0479940:intron | 40.0% | |
| TACTGAGTACAGGCAAAAAG+TGG | - | chr3_3:85121295-85121314 | Msa0479940:intron | 40.0% | |
| AAAAGTGGCTGTACATCTAC+TGG | - | chr3_3:85121310-85121329 | Msa0479940:intron | 40.0% | |
| CATAGAATTCCCACATGCTT+TGG | + | chr3_3:85121369-85121388 | None:intergenic | 40.0% | |
| CTTGGACATGAGTCAGTATA+GGG | + | chr3_3:85121394-85121413 | None:intergenic | 40.0% | |
| TCTTGGACATGAGTCAGTAT+AGG | + | chr3_3:85121395-85121414 | None:intergenic | 40.0% | |
| TACTATCACTTGCCTCTTCT+TGG | + | chr3_3:85121412-85121431 | None:intergenic | 40.0% | |
| ! | GTTGATAAGGTTGGTCATAC+CGG | - | chr3_3:85121519-85121538 | Msa0479940:intron | 40.0% |
| ATCATACTCAGGAAAACCAC+CGG | + | chr3_3:85121541-85121560 | None:intergenic | 40.0% | |
| TTTGAGCCAAATGAGTTTCG+TGG | + | chr3_3:85121624-85121643 | None:intergenic | 40.0% | |
| ! | CGAAACTCATTTGGCTCAAA+AGG | - | chr3_3:85121624-85121643 | Msa0479940:CDS | 40.0% |
| TTGGCTCAAAAGGTGAGAAT+AGG | - | chr3_3:85121634-85121653 | Msa0479940:CDS | 40.0% | |
| ! | GGATGCAGAAAATCTGCTTT+TGG | - | chr3_3:85121754-85121773 | Msa0479940:intron | 40.0% |
| GTGTGACAAAGGGAGTAAAA+AGG | - | chr3_3:85121843-85121862 | Msa0479940:intron | 40.0% | |
| TTCAAGGTAGAAGATGAGGA+GGG | + | chr3_3:85121902-85121921 | None:intergenic | 40.0% | |
| TTTCAAGGTAGAAGATGAGG+AGG | + | chr3_3:85121903-85121922 | None:intergenic | 40.0% | |
| AGTTTATCGTGTGGATGCAT+TGG | - | chr3_3:85122012-85122031 | Msa0479940:CDS | 40.0% | |
| AGAGCTCATTGCTACAAAGA+AGG | - | chr3_3:85122039-85122058 | Msa0479940:CDS | 40.0% | |
| TTTGGCATACATAGACAGTC+GGG | - | chr3_3:85122252-85122271 | Msa0479940:five_prime_UTR | 40.0% | |
| TCGAACATCCTCAATGGACA+GGG | + | chr3_3:85119124-85119143 | None:intergenic | 45.0% | |
| TGAGGATGTTCGACAAGTTG+AGG | - | chr3_3:85119131-85119150 | Msa0479940:CDS | 45.0% | |
| ! | GCATATTGACTGGTGGAATG+TGG | - | chr3_3:85119421-85119440 | Msa0479940:intron | 45.0% |
| !! | GTCCAGAAGTACTATCCACA+TGG | - | chr3_3:85119710-85119729 | Msa0479940:intron | 45.0% |
| TCCACATGGTTATCATGGTG+TGG | - | chr3_3:85119724-85119743 | Msa0479940:intron | 45.0% | |
| TCCACACCATGATAACCATG+TGG | + | chr3_3:85119728-85119747 | None:intergenic | 45.0% | |
| TGGTTATCATGGTGTGGACA+AGG | - | chr3_3:85119730-85119749 | Msa0479940:intron | 45.0% | |
| TTATCATGGTGTGGACAAGG+AGG | - | chr3_3:85119733-85119752 | Msa0479940:intron | 45.0% | |
| TATCATGGTGTGGACAAGGA+GGG | - | chr3_3:85119734-85119753 | Msa0479940:intron | 45.0% | |
| GCTCACTGAGAACTTATAGC+TGG | + | chr3_3:85120894-85120913 | None:intergenic | 45.0% | |
| ! | GAGCTACCAGAATTTCTAGG+CGG | - | chr3_3:85120910-85120929 | Msa0479940:CDS | 45.0% |
| CAACTACCGCCTAGAAATTC+TGG | + | chr3_3:85120919-85120938 | None:intergenic | 45.0% | |
| TGCACCTGTGTAGATCATGA+TGG | - | chr3_3:85120937-85120956 | Msa0479940:CDS | 45.0% | |
| ACAGCCATCATGATCTACAC+AGG | + | chr3_3:85120944-85120963 | None:intergenic | 45.0% | |
| GGCTGTATGACATCCGATAA+AGG | - | chr3_3:85120958-85120977 | Msa0479940:CDS | 45.0% | |
| TGCATGCAGATGGTTCTTAG+TGG | - | chr3_3:85121106-85121125 | Msa0479940:intron | 45.0% | |
| CGTAACAATTTCCAACGACG+GGG | - | chr3_3:85121153-85121172 | Msa0479940:intron | 45.0% | |
| GTAACAATTTCCAACGACGG+GGG | - | chr3_3:85121154-85121173 | Msa0479940:intron | 45.0% | |
| !! | AATTCCCACATGCTTTGGGA+GGG | + | chr3_3:85121364-85121383 | None:intergenic | 45.0% |
| ! | ACTGACTCATGTCCAAGAAG+AGG | - | chr3_3:85121397-85121416 | Msa0479940:CDS | 45.0% |
| GTAACCAGGACTGTTACAGT+GGG | - | chr3_3:85121776-85121795 | Msa0479940:intron | 45.0% | |
| GACAAAGGGAGTAAAAAGGG+AGG | - | chr3_3:85121847-85121866 | Msa0479940:intron | 45.0% | |
| TCAAGGTAGAAGATGAGGAG+GGG | + | chr3_3:85121901-85121920 | None:intergenic | 45.0% | |
| GCGTTTCAAGGTAGAAGATG+AGG | + | chr3_3:85121906-85121925 | None:intergenic | 45.0% | |
| GAATGCTGCAGTTTATCGTG+TGG | - | chr3_3:85122003-85122022 | Msa0479940:CDS | 45.0% | |
| ! | TCCTAAACAGGCTTTGTACG+AGG | - | chr3_3:85122207-85122226 | Msa0479940:CDS | 45.0% |
| GCAGCAAAAGTAGTGGCAGT+AGG | - | chr3_3:85119091-85119110 | Msa0479940:intron | 50.0% | |
| GAGCAATTCCCTGTCCATTG+AGG | - | chr3_3:85119113-85119132 | Msa0479940:CDS | 50.0% | |
| GTCGAACATCCTCAATGGAC+AGG | + | chr3_3:85119125-85119144 | None:intergenic | 50.0% | |
| TGACTGGTGGAATGTGGACA+TGG | - | chr3_3:85119427-85119446 | Msa0479940:intron | 50.0% | |
| TGTGGGCCAACATGATCCAA+TGG | - | chr3_3:85119512-85119531 | Msa0479940:intron | 50.0% | |
| CTTGCAGCTATAGAGCAAGC+TGG | + | chr3_3:85119884-85119903 | None:intergenic | 50.0% | |
| GATGAGTTCTCGAGCAGACT+TGG | + | chr3_3:85120205-85120224 | None:intergenic | 50.0% | |
| TGACATCCGATAAAGGGCCA+TGG | - | chr3_3:85120965-85120984 | Msa0479940:intron | 50.0% | |
| GTCTTGCCATGGCCCTTTAT+CGG | + | chr3_3:85120974-85120993 | None:intergenic | 50.0% | |
| AATTTCCAACGACGGGGGTA+GGG | - | chr3_3:85121159-85121178 | Msa0479940:intron | 50.0% | |
| ATATCCCCTCCCAAAGCATG+TGG | - | chr3_3:85121356-85121375 | Msa0479940:intron | 50.0% | |
| TATCCCCTCCCAAAGCATGT+GGG | - | chr3_3:85121357-85121376 | Msa0479940:CDS | 50.0% | |
| !! | ATTCCCACATGCTTTGGGAG+GGG | + | chr3_3:85121363-85121382 | None:intergenic | 50.0% |
| ! | GAATTCCCACATGCTTTGGG+AGG | + | chr3_3:85121365-85121384 | None:intergenic | 50.0% |
| ! | GATAAGGTTGGTCATACCGG+TGG | - | chr3_3:85121522-85121541 | Msa0479940:intron | 50.0% |
| GCAGCACCACGAAACTCATT+TGG | - | chr3_3:85121615-85121634 | Msa0479940:CDS | 50.0% | |
| GGTAACCAGGACTGTTACAG+TGG | - | chr3_3:85121775-85121794 | Msa0479940:intron | 50.0% | |
| !! | GGGGTTTGGCTTTGTGAATC+TGG | + | chr3_3:85121882-85121901 | None:intergenic | 50.0% |
| GTAGAAGATGAGGAGGGGTT+TGG | + | chr3_3:85121896-85121915 | None:intergenic | 50.0% | |
| ! | AAGCTCACTGAGGCGTTTCA+AGG | + | chr3_3:85121918-85121937 | None:intergenic | 50.0% |
| TGCCATGCCAAGTGAGAAAG+AGG | - | chr3_3:85121973-85121992 | Msa0479940:CDS | 50.0% | |
| CTCCTCTTTCTCACTTGGCA+TGG | + | chr3_3:85121978-85121997 | None:intergenic | 50.0% | |
| AGCAGCTCCTCTTTCTCACT+TGG | + | chr3_3:85121983-85122002 | None:intergenic | 50.0% | |
| GCCTCGTACAAAGCCTGTTT+AGG | + | chr3_3:85122211-85122230 | None:intergenic | 50.0% | |
| GGGCCAACATGATCCAATGG+AGG | - | chr3_3:85119515-85119534 | Msa0479940:intron | 55.0% | |
| CAATTTCCAACGACGGGGGT+AGG | - | chr3_3:85121158-85121177 | Msa0479940:intron | 55.0% | |
| !! | GGTGCTGCTTGCTTCTCCTT+TGG | + | chr3_3:85121603-85121622 | None:intergenic | 55.0% |
| GATGCCCACTGTAACAGTCC+TGG | + | chr3_3:85121783-85121802 | None:intergenic | 55.0% | |
| AATCACCCTACCCCCGTCGT+TGG | + | chr3_3:85121167-85121186 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85118847 | 85122321 | 85118847 | ID=Msa0479940;Name=Msa0479940 |
| chr3_3 | mRNA | 85118847 | 85122321 | 85118847 | ID=Msa0479940-mRNA-1;Parent=Msa0479940;Name=Msa0479940-mRNA-1;_AED=0.28;_eAED=0.28;_QI=87|0.72|0.75|1|0.90|0.91|12|0|536 |
| chr3_3 | exon | 85118847 | 85118951 | 85118847 | ID=Msa0479940-mRNA-1:exon:24373;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85119108 | 85119406 | 85119108 | ID=Msa0479940-mRNA-1:exon:24372;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85119523 | 85119658 | 85119523 | ID=Msa0479940-mRNA-1:exon:24371;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85119762 | 85119861 | 85119762 | ID=Msa0479940-mRNA-1:exon:24370;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85119950 | 85120053 | 85119950 | ID=Msa0479940-mRNA-1:exon:24369;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85120160 | 85120259 | 85120160 | ID=Msa0479940-mRNA-1:exon:24368;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85120349 | 85120398 | 85120349 | ID=Msa0479940-mRNA-1:exon:24367;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85120520 | 85120621 | 85120520 | ID=Msa0479940-mRNA-1:exon:24366;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85120905 | 85120982 | 85120905 | ID=Msa0479940-mRNA-1:exon:24365;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85121357 | 85121485 | 85121357 | ID=Msa0479940-mRNA-1:exon:24364;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85121601 | 85121700 | 85121601 | ID=Msa0479940-mRNA-1:exon:24363;Parent=Msa0479940-mRNA-1 |
| chr3_3 | exon | 85121927 | 85122321 | 85121927 | ID=Msa0479940-mRNA-1:exon:24362;Parent=Msa0479940-mRNA-1 |
| chr3_3 | five_prime_UTR | 85122235 | 85122321 | 85122235 | ID=Msa0479940-mRNA-1:five_prime_utr;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85121927 | 85122234 | 85121927 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85121601 | 85121700 | 85121601 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85121357 | 85121485 | 85121357 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85120905 | 85120982 | 85120905 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85120520 | 85120621 | 85120520 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85120349 | 85120398 | 85120349 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85120160 | 85120259 | 85120160 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85119950 | 85120053 | 85119950 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85119762 | 85119861 | 85119762 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85119523 | 85119658 | 85119523 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85119108 | 85119406 | 85119108 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| chr3_3 | CDS | 85118847 | 85118951 | 85118847 | ID=Msa0479940-mRNA-1:cds;Parent=Msa0479940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
