Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479090 | XP_024635501.1 | 80.717 | 586 | 47 | 4 | 11 | 550 | 4 | 569 | 0.0 | 864 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479090 | sp|F4JVA6|SFH6_ARATH | 52.202 | 613 | 214 | 9 | 12 | 562 | 16 | 611 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479090 | A0A072V497 | 80.717 | 586 | 47 | 4 | 11 | 550 | 4 | 569 | 0.0 | 863 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037200 | Msa0479090 | 0.818390 | 2.010300e-52 | -8.615850e-47 |
| Msa0130520 | Msa0479090 | 0.801047 | 1.082370e-48 | -8.615850e-47 |
| Msa0177300 | Msa0479090 | 0.814742 | 1.319698e-51 | -8.615850e-47 |
| Msa0177340 | Msa0479090 | 0.810172 | 1.315389e-50 | -8.615850e-47 |
| Msa0197180 | Msa0479090 | 0.808721 | 2.694105e-50 | -8.615850e-47 |
| Msa0377010 | Msa0479090 | 0.887053 | 1.999510e-72 | -8.615850e-47 |
| Msa0384540 | Msa0479090 | 0.863521 | 2.345848e-64 | -8.615850e-47 |
| Msa0435000 | Msa0479090 | 0.933421 | 1.924888e-95 | -8.615850e-47 |
| Msa0479040 | Msa0479090 | 0.955486 | 2.716631e-113 | -8.615850e-47 |
| Msa0479090 | Msa0479940 | 0.963978 | 9.434497e-123 | -8.615850e-47 |
| Msa0479090 | Msa0579350 | 0.830324 | 3.131239e-55 | -8.615850e-47 |
| Msa0479090 | Msa0579370 | 0.840100 | 1.065257e-57 | -8.615850e-47 |
| Msa0479090 | Msa0614990 | 0.852327 | 4.963952e-61 | -8.615850e-47 |
| Msa0479090 | Msa0650620 | 0.804342 | 2.261879e-49 | -8.615850e-47 |
| Msa0479090 | Msa0650730 | 0.807293 | 5.425255e-50 | -8.615850e-47 |
| Msa0479090 | Msa0709670 | 0.929110 | 1.110967e-92 | -8.615850e-47 |
| Msa0479090 | Msa0755080 | 0.806010 | 1.012281e-49 | -8.615850e-47 |
| Msa0479090 | Msa0796950 | 0.815557 | 8.698968e-52 | -8.615850e-47 |
| Msa0479090 | Msa0834450 | 0.806735 | 7.121404e-50 | -8.615850e-47 |
| Msa0479090 | Msa0993240 | 0.801713 | 7.909002e-49 | -8.615850e-47 |
| Msa0479090 | Msa1094430 | 0.828560 | 8.401243e-55 | -8.615850e-47 |
| Msa0479090 | Msa1229850 | 0.801900 | 7.238553e-49 | -8.615850e-47 |
| Msa0479090 | Msa1234730 | 0.808034 | 3.775592e-50 | -8.615850e-47 |
| Msa0479090 | Msa1315110 | 0.809740 | 1.629417e-50 | -8.615850e-47 |
| Msa0479090 | Msa1350690 | 0.819071 | 1.407841e-52 | -8.615850e-47 |
| Msa0479090 | Msa1459760 | -0.818338 | 2.064612e-52 | -8.615850e-47 |
| Msa0266210 | Msa0479090 | 0.817747 | 2.809590e-52 | -8.615850e-47 |
| Msa0287670 | Msa0479090 | 0.821516 | 3.873338e-53 | -8.615850e-47 |
| Msa0308770 | Msa0479090 | 0.811428 | 7.036689e-51 | -8.615850e-47 |
| Msa0347610 | Msa0479090 | 0.800653 | 1.302776e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479090 | MtrunA17_Chr3g0141821 | 80.717 | 586 | 47 | 4 | 11 | 550 | 4 | 569 | 0.0 | 863 |
| Msa0479090 | MtrunA17_Chr1g0155521 | 58.553 | 608 | 171 | 8 | 14 | 550 | 18 | 615 | 0.0 | 653 |
| Msa0479090 | MtrunA17_Chr4g0035391 | 49.755 | 611 | 215 | 10 | 14 | 550 | 18 | 610 | 0.0 | 535 |
| Msa0479090 | MtrunA17_Chr3g0144911 | 59.352 | 401 | 111 | 2 | 14 | 362 | 18 | 418 | 8.50e-165 | 477 |
| Msa0479090 | MtrunA17_Chr5g0404711 | 52.151 | 372 | 119 | 7 | 31 | 353 | 10 | 371 | 1.96e-122 | 370 |
| Msa0479090 | MtrunA17_Chr5g0404711 | 41.333 | 75 | 44 | 0 | 476 | 550 | 397 | 471 | 3.71e-11 | 65.9 |
| Msa0479090 | MtrunA17_Chr3g0144891 | 42.564 | 585 | 225 | 11 | 20 | 542 | 20 | 555 | 1.22e-121 | 371 |
| Msa0479090 | MtrunA17_Chr8g0372651 | 56.173 | 324 | 87 | 3 | 25 | 302 | 13 | 327 | 2.50e-113 | 349 |
| Msa0479090 | MtrunA17_Chr8g0372651 | 47.126 | 87 | 42 | 2 | 459 | 542 | 457 | 542 | 3.75e-13 | 72.4 |
| Msa0479090 | MtrunA17_Chr7g0236461 | 36.409 | 607 | 286 | 14 | 11 | 549 | 6 | 580 | 1.85e-110 | 343 |
| Msa0479090 | MtrunA17_Chr3g0080051 | 36.656 | 622 | 293 | 13 | 13 | 550 | 8 | 612 | 1.74e-103 | 326 |
| Msa0479090 | MtrunA17_Chr4g0035361 | 41.584 | 505 | 187 | 11 | 100 | 542 | 1 | 459 | 3.66e-103 | 320 |
| Msa0479090 | MtrunA17_Chr8g0369291 | 34.790 | 595 | 284 | 13 | 37 | 556 | 33 | 598 | 1.15e-88 | 286 |
| Msa0479090 | MtrunA17_Chr4g0035381 | 48.718 | 273 | 87 | 2 | 71 | 290 | 48 | 320 | 8.19e-85 | 270 |
| Msa0479090 | MtrunA17_Chr5g0399151 | 43.728 | 279 | 111 | 1 | 59 | 291 | 74 | 352 | 1.83e-77 | 253 |
| Msa0479090 | MtrunA17_Chr3g0144901 | 51.852 | 135 | 44 | 2 | 437 | 550 | 56 | 190 | 2.53e-28 | 112 |
| Msa0479090 | MtrunA17_Chr7g0243541 | 30.769 | 169 | 106 | 6 | 100 | 264 | 116 | 277 | 4.19e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479090 | AT4G39170.1 | 52.202 | 613 | 214 | 9 | 12 | 562 | 16 | 611 | 0.0 | 568 |
| Msa0479090 | AT4G39170.2 | 52.039 | 613 | 213 | 10 | 12 | 562 | 16 | 609 | 0.0 | 561 |
| Msa0479090 | AT2G21520.2 | 51.043 | 623 | 212 | 10 | 6 | 550 | 17 | 624 | 0.0 | 556 |
| Msa0479090 | AT2G21520.3 | 51.043 | 623 | 212 | 10 | 6 | 550 | 17 | 624 | 0.0 | 556 |
| Msa0479090 | AT2G21520.1 | 51.043 | 623 | 212 | 10 | 6 | 550 | 13 | 620 | 0.0 | 555 |
| Msa0479090 | AT1G75370.1 | 49.023 | 614 | 212 | 11 | 12 | 549 | 16 | 604 | 3.28e-160 | 472 |
| Msa0479090 | AT1G75370.2 | 49.023 | 614 | 212 | 11 | 12 | 549 | 16 | 604 | 2.00e-159 | 472 |
| Msa0479090 | AT1G19650.1 | 46.242 | 612 | 228 | 12 | 15 | 550 | 16 | 602 | 3.39e-157 | 464 |
| Msa0479090 | AT1G19650.2 | 45.992 | 524 | 191 | 9 | 97 | 550 | 29 | 530 | 2.90e-137 | 410 |
| Msa0479090 | AT2G21540.6 | 55.682 | 352 | 105 | 3 | 20 | 325 | 18 | 364 | 3.40e-130 | 393 |
| Msa0479090 | AT2G21540.2 | 55.682 | 352 | 105 | 3 | 20 | 325 | 18 | 364 | 3.40e-130 | 393 |
| Msa0479090 | AT2G21540.1 | 55.682 | 352 | 105 | 3 | 20 | 325 | 18 | 364 | 3.40e-130 | 393 |
| Msa0479090 | AT2G21540.4 | 55.682 | 352 | 105 | 3 | 20 | 325 | 18 | 364 | 3.40e-130 | 393 |
| Msa0479090 | AT2G21540.3 | 55.182 | 357 | 109 | 3 | 20 | 330 | 18 | 369 | 3.95e-130 | 392 |
| Msa0479090 | AT2G21540.5 | 55.182 | 357 | 109 | 3 | 20 | 330 | 18 | 369 | 3.95e-130 | 392 |
| Msa0479090 | AT4G34580.2 | 58.154 | 325 | 88 | 2 | 21 | 299 | 11 | 333 | 8.84e-128 | 387 |
| Msa0479090 | AT4G34580.1 | 58.154 | 325 | 88 | 2 | 21 | 299 | 11 | 333 | 8.84e-128 | 387 |
| Msa0479090 | AT1G19650.3 | 50.459 | 436 | 133 | 6 | 15 | 398 | 16 | 420 | 3.82e-127 | 381 |
| Msa0479090 | AT4G39180.1 | 57.362 | 326 | 89 | 3 | 20 | 298 | 18 | 340 | 1.24e-125 | 381 |
| Msa0479090 | AT4G39180.3 | 57.362 | 326 | 89 | 3 | 20 | 298 | 18 | 340 | 1.38e-125 | 381 |
| Msa0479090 | AT4G39180.2 | 57.362 | 326 | 89 | 3 | 20 | 298 | 18 | 340 | 1.38e-125 | 381 |
| Msa0479090 | AT4G36490.1 | 53.117 | 369 | 112 | 7 | 29 | 348 | 12 | 368 | 8.06e-124 | 376 |
| Msa0479090 | AT4G36490.1 | 53.731 | 67 | 31 | 0 | 476 | 542 | 465 | 531 | 6.94e-14 | 75.1 |
| Msa0479090 | AT2G16380.2 | 41.098 | 601 | 214 | 16 | 20 | 548 | 9 | 541 | 1.73e-123 | 375 |
| Msa0479090 | AT2G16380.1 | 41.098 | 601 | 214 | 16 | 20 | 548 | 9 | 541 | 1.73e-123 | 375 |
| Msa0479090 | AT2G18180.2 | 52.186 | 366 | 109 | 7 | 30 | 348 | 17 | 363 | 2.07e-118 | 362 |
| Msa0479090 | AT2G18180.2 | 53.731 | 67 | 31 | 0 | 476 | 542 | 468 | 534 | 1.07e-13 | 74.3 |
| Msa0479090 | AT2G18180.1 | 56.426 | 319 | 85 | 4 | 30 | 301 | 17 | 328 | 2.41e-118 | 363 |
| Msa0479090 | AT2G18180.1 | 53.731 | 67 | 31 | 0 | 476 | 542 | 468 | 534 | 1.02e-13 | 74.7 |
| Msa0479090 | AT3G24840.7 | 54.348 | 322 | 97 | 4 | 20 | 293 | 23 | 342 | 1.11e-109 | 341 |
| Msa0479090 | AT3G24840.3 | 54.348 | 322 | 97 | 4 | 20 | 293 | 23 | 342 | 1.11e-109 | 341 |
| Msa0479090 | AT3G24840.5 | 54.348 | 322 | 97 | 4 | 20 | 293 | 23 | 342 | 1.11e-109 | 341 |
| Msa0479090 | AT3G24840.1 | 54.348 | 322 | 97 | 4 | 20 | 293 | 23 | 342 | 1.33e-109 | 341 |
| Msa0479090 | AT3G24840.6 | 54.348 | 322 | 97 | 4 | 20 | 293 | 23 | 342 | 1.33e-109 | 341 |
| Msa0479090 | AT3G24840.4 | 54.348 | 322 | 97 | 4 | 20 | 293 | 23 | 342 | 1.33e-109 | 341 |
| Msa0479090 | AT3G24840.2 | 54.348 | 322 | 97 | 4 | 20 | 293 | 23 | 342 | 1.33e-109 | 341 |
| Msa0479090 | AT2G18180.4 | 57.490 | 247 | 59 | 1 | 101 | 301 | 11 | 257 | 1.06e-97 | 306 |
| Msa0479090 | AT2G18180.4 | 53.731 | 67 | 31 | 0 | 476 | 542 | 397 | 463 | 6.90e-14 | 74.7 |
| Msa0479090 | AT2G18180.3 | 57.490 | 247 | 59 | 1 | 101 | 301 | 11 | 257 | 1.12e-97 | 307 |
| Msa0479090 | AT2G18180.3 | 53.731 | 67 | 31 | 0 | 476 | 542 | 397 | 463 | 6.95e-14 | 74.7 |
| Msa0479090 | AT2G16380.3 | 39.271 | 494 | 179 | 12 | 118 | 548 | 1 | 436 | 2.26e-93 | 294 |
| Msa0479090 | AT1G55690.3 | 45.137 | 401 | 162 | 6 | 13 | 363 | 22 | 414 | 3.22e-93 | 299 |
| Msa0479090 | AT1G55690.2 | 45.137 | 401 | 162 | 6 | 13 | 363 | 22 | 414 | 5.05e-93 | 299 |
| Msa0479090 | AT1G55690.4 | 45.137 | 401 | 162 | 6 | 13 | 363 | 22 | 414 | 5.05e-93 | 299 |
| Msa0479090 | AT1G55690.1 | 45.137 | 401 | 162 | 6 | 13 | 363 | 22 | 414 | 5.05e-93 | 299 |
| Msa0479090 | AT1G55690.5 | 45.137 | 401 | 162 | 6 | 13 | 363 | 22 | 414 | 5.05e-93 | 299 |
| Msa0479090 | AT5G56160.1 | 34.017 | 585 | 299 | 11 | 23 | 550 | 19 | 573 | 2.30e-92 | 296 |
| Msa0479090 | AT5G56160.3 | 34.017 | 585 | 299 | 11 | 23 | 550 | 19 | 573 | 2.30e-92 | 296 |
| Msa0479090 | AT5G56160.2 | 45.482 | 332 | 126 | 4 | 23 | 304 | 19 | 345 | 4.92e-91 | 290 |
| Msa0479090 | AT2G18180.5 | 56.957 | 230 | 53 | 1 | 118 | 301 | 1 | 230 | 3.71e-89 | 283 |
| Msa0479090 | AT2G18180.5 | 53.731 | 67 | 31 | 0 | 476 | 542 | 370 | 436 | 6.07e-14 | 74.7 |
| Msa0479090 | AT5G47510.2 | 44.922 | 256 | 95 | 1 | 78 | 287 | 29 | 284 | 4.08e-74 | 241 |
| Msa0479090 | AT5G47510.4 | 44.922 | 256 | 95 | 1 | 78 | 287 | 29 | 284 | 7.51e-74 | 241 |
| Msa0479090 | AT5G47510.1 | 44.922 | 256 | 95 | 1 | 78 | 287 | 28 | 283 | 9.51e-74 | 241 |
| Msa0479090 | AT5G47510.3 | 43.805 | 226 | 81 | 1 | 108 | 287 | 2 | 227 | 1.05e-63 | 213 |
Find 128 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTATCACTTGCCTCTTCT+TGG | 0.202570 | 3_3:+83919243 | None:intergenic |
| ATGAATCTTTGAAGTAGTTT+TGG | 0.227191 | 3_3:+83920028 | None:intergenic |
| CAGTCATTAAAGAATCTTTA+TGG | 0.230891 | 3_3:-83918924 | Msa0479090:CDS |
| TGAATGTTCCATTAGGTTCT+TGG | 0.246980 | 3_3:-83919899 | Msa0479090:intron |
| CCGTGACTTCAGCTCAGATC+TGG | 0.268147 | 3_3:+83916104 | Msa0479080:intron |
| GGAAAACCTTTAAAATGTTT+TGG | 0.274087 | 3_3:+83919661 | None:intergenic |
| GTCTTGCCATGGCCCTTTAT+CGG | 0.290544 | 3_3:+83919683 | None:intergenic |
| AGTAAGAAGTACTGAGAATT+TGG | 0.292222 | 3_3:+83916060 | Msa0479080:intron |
| TTGTTCGAACAAAGGCAAAA+AGG | 0.292384 | 3_3:+83918841 | None:intergenic |
| GGGGTTTGGCTTTGTGAATC+TGG | 0.297857 | 3_3:+83918773 | None:intergenic |
| TAAATGCATCATGCAAATTA+AGG | 0.298711 | 3_3:-83921614 | Msa0479090:CDS |
| AACCATGTGGATAGTACTTC+TGG | 0.304122 | 3_3:+83920943 | None:intergenic |
| TTCCTTTGGTCAGCCTAGTT+TGG | 0.320424 | 3_3:+83916130 | Msa0479080:intron |
| CATAGAATTCCCACATGCTT+TGG | 0.325787 | 3_3:+83919286 | None:intergenic |
| AATGAGACAAGAAGAACTTT+TGG | 0.329773 | 3_3:-83918418 | Msa0479090:CDS |
| GGCTGTATGACATCCGATAA+AGG | 0.337655 | 3_3:-83919696 | Msa0479090:CDS |
| CAACTACCGCCTAGAAATTC+TGG | 0.341995 | 3_3:+83919738 | None:intergenic |
| CTTGGACATGAGTCAGTATA+GGG | 0.349834 | 3_3:+83919261 | None:intergenic |
| GATGATAAGTGGAAAAGAAT+TGG | 0.351511 | 3_3:-83921657 | Msa0479090:CDS |
| AGTTACTTGCATAAGCCTAT+TGG | 0.352097 | 3_3:+83920860 | None:intergenic |
| GTGTGACAAAGGGAGTAAAA+AGG | 0.353499 | 3_3:-83918809 | Msa0479090:CDS |
| GTTACTTGCATAAGCCTATT+GGG | 0.369599 | 3_3:+83920861 | None:intergenic |
| GGATGCAGAAAATCTGCTTT+TGG | 0.376361 | 3_3:-83918898 | Msa0479090:CDS |
| AGTGAGCTACCAGAATTTCT+AGG | 0.380292 | 3_3:-83919747 | Msa0479090:CDS |
| TACCATAGTCTTTCCTCCAT+TGG | 0.380545 | 3_3:+83921132 | None:intergenic |
| ATAGAATTCCCACATGCTTT+GGG | 0.388995 | 3_3:+83919287 | None:intergenic |
| GGTGCTGCTTGCTTCTCCTT+TGG | 0.389658 | 3_3:+83919052 | None:intergenic |
| CCTAGCCTCTCAATATAAAC+AGG | 0.390737 | 3_3:+83920894 | None:intergenic |
| TCTTGGACATGAGTCAGTAT+AGG | 0.395958 | 3_3:+83919260 | None:intergenic |
| AGCAGCTCCTCTTTCTCACT+TGG | 0.399254 | 3_3:+83918672 | None:intergenic |
| CGAAACTCATTTGGCTCAAA+AGG | 0.401215 | 3_3:-83919028 | Msa0479090:intron |
| GTAGAAGATGAGGAGGGGTT+TGG | 0.414982 | 3_3:+83918759 | None:intergenic |
| TTCCCACATGCTTTGGGATA+GGG | 0.419985 | 3_3:+83919293 | None:intergenic |
| CTAGGCAAGATTTGTTGATA+AGG | 0.428115 | 3_3:-83919146 | Msa0479090:intron |
| GCAAGATTTGTTGATAAGGT+TGG | 0.435405 | 3_3:-83919142 | Msa0479090:CDS |
| GAAACACTACTGATTATAGT+AGG | 0.436443 | 3_3:-83921708 | Msa0479090:CDS |
| CTCCTCTTTCTCACTTGGCA+TGG | 0.452012 | 3_3:+83918677 | None:intergenic |
| AAGCTCACTGAGGCGTTTCA+AGG | 0.453754 | 3_3:+83918737 | None:intergenic |
| TACTATCCACATGGTTATCA+TGG | 0.455469 | 3_3:-83920936 | Msa0479090:CDS |
| GCAGCACCACGAAACTCATT+TGG | 0.462925 | 3_3:-83919037 | Msa0479090:CDS |
| TTTATCATCAATGCTGGTCC+TGG | 0.464243 | 3_3:-83920092 | Msa0479090:CDS |
| AAAAGTGGCTGTACATCTAC+TGG | 0.471399 | 3_3:-83919344 | Msa0479090:CDS |
| ATCCAATGGAGGAAAGACTA+TGG | 0.472951 | 3_3:-83921134 | Msa0479090:CDS |
| TCCCACATGCTTTGGGATAG+GGG | 0.473351 | 3_3:+83919294 | None:intergenic |
| TTTGAGCCAAATGAGTTTCG+TGG | 0.473382 | 3_3:+83919031 | None:intergenic |
| CGTGACTTCAGCTCAGATCT+GGG | 0.473438 | 3_3:+83916105 | Msa0479080:intron |
| GTTGATAAGGTTGGTCATAC+CGG | 0.475173 | 3_3:-83919133 | Msa0479090:CDS |
| GGTAACCAGGACTGTTACAG+TGG | 0.476374 | 3_3:-83918877 | Msa0479090:CDS |
| GACAATTATGACTACACAGC+TGG | 0.478304 | 3_3:-83916015 | Msa0479090:CDS |
| GTCGAACATCCTCAATGGAC+AGG | 0.479812 | 3_3:+83921538 | None:intergenic |
| ATGACTATCATATGTTATTG+AGG | 0.481600 | 3_3:-83921440 | Msa0479090:intron |
| TTGAGAAAGCAAAGCTTATG+TGG | 0.482104 | 3_3:-83921166 | Msa0479090:CDS |
| GCTGTATGACATCCGATAAA+GGG | 0.483951 | 3_3:-83919695 | Msa0479090:CDS |
| GATGAGTTCTCGAGCAGACT+TGG | 0.484272 | 3_3:+83920452 | None:intergenic |
| ATTCCCACATGCTTTGGGAT+AGG | 0.485082 | 3_3:+83919292 | None:intergenic |
| TCGTAACAATTTCCAACGAC+GGG | 0.488552 | 3_3:-83919502 | Msa0479090:CDS |
| AGAGTTCAGAGGATGATAAG+TGG | 0.489773 | 3_3:-83921668 | Msa0479090:CDS |
| ATCAATAATCTTGTCAACCA+TGG | 0.500918 | 3_3:+83919081 | None:intergenic |
| TAGGAAAAGTTGATCCCAAT+AGG | 0.504043 | 3_3:-83920875 | Msa0479090:CDS |
| TGCCATGCCAAGTGAGAAAG+AGG | 0.504746 | 3_3:-83918679 | Msa0479090:CDS |
| TACTTCTTACTGCATTACAC+TGG | 0.504919 | 3_3:-83916048 | Msa0479090:CDS |
| GTTGACAAGATTATTGATGT+TGG | 0.506685 | 3_3:-83919076 | Msa0479090:CDS |
| TGGTCAGCCTAGTTTGGCTG+TGG | 0.509107 | 3_3:+83916136 | Msa0479080:intron |
| TTTCCTCCATTGGATCATGT+TGG | 0.513399 | 3_3:+83921142 | None:intergenic |
| TATAATCAGTAGTGTTTCAA+AGG | 0.520512 | 3_3:+83921713 | None:intergenic |
| TGATAGTCATCATGTATTGA+AGG | 0.523730 | 3_3:+83921453 | None:intergenic |
| ATTAAAGAATCTTTATGGCA+TGG | 0.524086 | 3_3:-83918919 | Msa0479090:CDS |
| AACTTGTCGAACATCCTCAA+TGG | 0.528444 | 3_3:+83921533 | None:intergenic |
| CCTGTTTATATTGAGAGGCT+AGG | 0.536718 | 3_3:-83920894 | Msa0479090:CDS |
| GTTGTAGATTCTTGAAAGCA+AGG | 0.537683 | 3_3:-83921199 | Msa0479090:intron |
| CAAATGTTTATCATCAATGC+TGG | 0.541743 | 3_3:-83920098 | Msa0479090:CDS |
| TGGTACAGATACAATTATAG+AGG | 0.554834 | 3_3:-83921114 | Msa0479090:intron |
| TGAGGATGTTCGACAAGTTG+AGG | 0.556408 | 3_3:-83921529 | Msa0479090:CDS |
| TGGTTATCATGGTGTGGACA+AGG | 0.560676 | 3_3:-83920925 | Msa0479090:CDS |
| ATAGCATTTCGTGTGACAAA+GGG | 0.564103 | 3_3:-83918819 | Msa0479090:CDS |
| AATAGCATTTCGTGTGACAA+AGG | 0.565114 | 3_3:-83918820 | Msa0479090:CDS |
| TCAATAATCTTGTCAACCAT+GGG | 0.565693 | 3_3:+83919082 | None:intergenic |
| TTATGACTACACAGCTGGAA+AGG | 0.568054 | 3_3:-83916010 | None:intergenic |
| GATTATTGATGTTGGACCAA+AGG | 0.573610 | 3_3:-83919068 | Msa0479090:CDS |
| TTTGGCATACATAGACAGTC+GGG | 0.579008 | 3_3:-83918400 | Msa0479090:CDS |
| AGAGCTCATTGCTACAAAGA+AGG | 0.579053 | 3_3:-83918613 | Msa0479090:intron |
| AGTCACGCCACAGCCAAACT+AGG | 0.579179 | 3_3:-83916143 | Msa0479090:CDS |
| GCAGCAAAAGTAGTGGCAGT+AGG | 0.581849 | 3_3:-83921569 | Msa0479090:CDS |
| ATCCCCTATCCCAAAGCATG+TGG | 0.584480 | 3_3:-83919296 | Msa0479090:CDS |
| GAAGACCTGTTTATATTGAG+AGG | 0.585453 | 3_3:-83920899 | Msa0479090:CDS |
| GCGTTTCAAGGTAGAAGATG+AGG | 0.585982 | 3_3:+83918749 | None:intergenic |
| GATGCCCACTGTAACAGTCC+TGG | 0.590148 | 3_3:+83918872 | None:intergenic |
| AAATGCTATTGTTCGAACAA+AGG | 0.593799 | 3_3:+83918833 | None:intergenic |
| TGCATGCAGATGGTTCTTAG+TGG | 0.596223 | 3_3:-83919548 | Msa0479090:intron |
| TGTGGGCCAACATGATCCAA+TGG | 0.599513 | 3_3:-83921148 | Msa0479090:CDS |
| GAGCAATTCCCTGTCCATTG+AGG | 0.600815 | 3_3:-83921547 | Msa0479090:CDS |
| TACTTGAGATTATCGATGCG+AGG | 0.602427 | 3_3:-83919856 | Msa0479090:intron |
| ACTGACTCATGTCCAAGAAG+AGG | 0.602573 | 3_3:-83919255 | Msa0479090:CDS |
| AGTTTATCGTGTGGATGCAT+TGG | 0.603746 | 3_3:-83918640 | Msa0479090:CDS |
| CCAGATCTGAGCTGAAGTCA+CGG | 0.605295 | 3_3:-83916104 | Msa0479090:CDS |
| ATCGTAACAATTTCCAACGA+CGG | 0.608081 | 3_3:-83919503 | Msa0479090:CDS |
| TCCTAAACAGGCTTTGTACG+AGG | 0.609326 | 3_3:-83918445 | Msa0479090:intron |
| GATAAGGTTGGTCATACCGG+TGG | 0.614668 | 3_3:-83919130 | Msa0479090:CDS |
| ACTTCTTACTGCATTACACT+GGG | 0.615513 | 3_3:-83916047 | Msa0479090:CDS |
| TGACATCCGATAAAGGGCCA+TGG | 0.616150 | 3_3:-83919689 | Msa0479090:CDS |
| TTCAAGGTAGAAGATGAGGA+GGG | 0.616304 | 3_3:+83918753 | None:intergenic |
| TCAAGGTAGAAGATGAGGAG+GGG | 0.617122 | 3_3:+83918754 | None:intergenic |
| AAAAGAAGCAGCAAAAGTAG+TGG | 0.618855 | 3_3:-83921576 | Msa0479090:CDS |
| TCCACATGGTTATCATGGTG+TGG | 0.619712 | 3_3:-83920931 | Msa0479090:CDS |
| TCGAACATCCTCAATGGACA+GGG | 0.623693 | 3_3:+83921539 | None:intergenic |
| TGAAAGAAGAGAGAGTTCAG+AGG | 0.630165 | 3_3:-83921679 | Msa0479090:CDS |
| TTTCAAGGTAGAAGATGAGG+AGG | 0.637871 | 3_3:+83918752 | None:intergenic |
| ATCATACGCAGGAAAACCAC+CGG | 0.641473 | 3_3:+83919114 | None:intergenic |
| TGAGAAAGCAAAGCTTATGT+GGG | 0.641603 | 3_3:-83921165 | Msa0479090:CDS |
| AGCCAAACTAGGCTGACCAA+AGG | 0.642703 | 3_3:-83916132 | Msa0479090:CDS |
| TTCCATAGAAGCTTAAAACC+AGG | 0.645111 | 3_3:+83920074 | None:intergenic |
| TCCCCTATCCCAAAGCATGT+GGG | 0.648886 | 3_3:-83919295 | Msa0479090:CDS |
| GGAACATATTCATCATACGC+AGG | 0.648931 | 3_3:+83919103 | None:intergenic |
| TATCATGGTGTGGACAAGGA+GGG | 0.652614 | 3_3:-83920921 | Msa0479090:CDS |
| TAATCTCAAGTAATTTACTG+TGG | 0.654334 | 3_3:+83919867 | None:intergenic |
| CGTAACAATTTCCAACGACG+GGG | 0.667892 | 3_3:-83919501 | Msa0479090:CDS |
| GTATGATGAATATGTTCCCA+TGG | 0.667989 | 3_3:-83919098 | Msa0479090:CDS |
| GTAACCAGGACTGTTACAGT+GGG | 0.670798 | 3_3:-83918876 | Msa0479090:CDS |
| TGCACCTGTGTAGATCATGA+TGG | 0.672539 | 3_3:-83919717 | Msa0479090:CDS |
| GTCCAGAAGTACTATCCACA+TGG | 0.674124 | 3_3:-83920945 | Msa0479090:CDS |
| TTATCATGGTGTGGACAAGG+AGG | 0.685438 | 3_3:-83920922 | Msa0479090:CDS |
| GAATGCTGCAGTTTATCGTG+TGG | 0.686694 | 3_3:-83918649 | Msa0479090:CDS |
| GTGATAGTACATTAATCACA+AGG | 0.690599 | 3_3:-83919229 | Msa0479090:intron |
| GGGCCAACATGATCCAATGG+AGG | 0.693515 | 3_3:-83921145 | Msa0479090:CDS |
| ACAGCCATCATGATCTACAC+AGG | 0.695056 | 3_3:+83919713 | None:intergenic |
| GTAACAATTTCCAACGACGG+GGG | 0.703576 | 3_3:-83919500 | Msa0479090:CDS |
| TCCACACCATGATAACCATG+TGG | 0.713264 | 3_3:+83920930 | None:intergenic |
| GAGCTACCAGAATTTCTAGG+CGG | 0.787653 | 3_3:-83919744 | Msa0479090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATTTAAAATTAATA+TGG | + | chr3_3:83917291-83917310 | Msa0479080:intron | 0.0% |
| !!! | ATATTAATTTTAAATTAATT+AGG | - | chr3_3:83917290-83917309 | Msa0479090:intron | 0.0% |
| !!! | AATTTTTCAATTAATTTTCA+TGG | + | chr3_3:83916454-83916473 | Msa0479080:intron | 10.0% |
| !!! | AATTAATTGAAAAATTGTTT+TGG | - | chr3_3:83916458-83916477 | Msa0479090:intron | 10.0% |
| !! | AGAAAAATATATAAATAAAG+GGG | + | chr3_3:83921210-83921229 | None:intergenic | 10.0% |
| !!! | TTATTCTTTTTCATGAATTT+AGG | - | chr3_3:83916021-83916040 | Msa0479090:CDS | 15.0% |
| !!! | TATTTTGTTTTTATTTGTGT+GGG | + | chr3_3:83920702-83920721 | None:intergenic | 15.0% |
| !!! | TACTTTTCTTTGTAAAAATA+TGG | + | chr3_3:83920894-83920913 | None:intergenic | 15.0% |
| !! | TCACAAAAATTGTTATAAAA+TGG | - | chr3_3:83920986-83921005 | Msa0479090:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr3_3:83921146-83921165 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr3_3:83921147-83921166 | None:intergenic | 15.0% |
| !!! | ATTTTTATAAGATTCCATTG+AGG | - | chr3_3:83917858-83917877 | Msa0479090:intron | 20.0% |
| !! | TATTTCAGGAAAATACATAA+GGG | + | chr3_3:83917890-83917909 | Msa0479080:three_prime_UTR | 20.0% |
| !! | TTATTTCAGGAAAATACATA+AGG | + | chr3_3:83917891-83917910 | Msa0479080:three_prime_UTR | 20.0% |
| !! | TTTCAAATCATCATTATTTC+AGG | + | chr3_3:83917904-83917923 | Msa0479080:three_prime_UTR | 20.0% |
| !! | TTCCACTTATTATTAATCAT+AGG | - | chr3_3:83918182-83918201 | Msa0479090:intron | 20.0% |
| !! | ATCCTATGATTAATAATAAG+TGG | + | chr3_3:83918187-83918206 | Msa0479080:three_prime_UTR | 20.0% |
| !!! | TACTATAATCCTTTGAATTT+TGG | - | chr3_3:83918441-83918460 | Msa0479090:intron | 20.0% |
| !!! | TATTTAGGTTCCATTTATAT+TGG | - | chr3_3:83918848-83918867 | Msa0479090:CDS | 20.0% |
| !!! | TTAAGAACTTCTTTAACTTT+AGG | - | chr3_3:83919294-83919313 | Msa0479090:CDS | 20.0% |
| !! | ATAAGATCATATCTTTAACA+TGG | - | chr3_3:83919945-83919964 | Msa0479090:intron | 20.0% |
| !! | GTGTGAATATTTCAAATAAT+CGG | + | chr3_3:83920044-83920063 | None:intergenic | 20.0% |
| !!! | AGTTAATATCGATTTGTAAA+AGG | + | chr3_3:83920120-83920139 | None:intergenic | 20.0% |
| !!! | GTCTAGTTTTTTTATATTCT+GGG | + | chr3_3:83920385-83920404 | None:intergenic | 20.0% |
| !! | TATAAAAAAACTAGACGATT+TGG | - | chr3_3:83920389-83920408 | Msa0479090:intron | 20.0% |
| !! | TAAAGACAATAATTTATCGT+AGG | + | chr3_3:83920466-83920485 | None:intergenic | 20.0% |
| !!! | TATGTATTTTGGTAATTTTC+TGG | + | chr3_3:83920676-83920695 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTTTTATTTGTG+TGG | + | chr3_3:83920703-83920722 | None:intergenic | 20.0% |
| !! | CATTAATTTAGATTGTAATG+AGG | - | chr3_3:83920722-83920741 | Msa0479090:intron | 20.0% |
| !!! | TTACAAAGAAAAGTATGTAT+TGG | - | chr3_3:83920899-83920918 | Msa0479090:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr3_3:83921077-83921096 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr3_3:83921187-83921206 | None:intergenic | 20.0% |
| ! | TATAATCAGTAGTGTTTCAA+AGG | + | chr3_3:83916114-83916133 | Msa0479080:intron | 25.0% |
| ! | TAAATGCATCATGCAAATTA+AGG | - | chr3_3:83916210-83916229 | Msa0479090:intron | 25.0% |
| ! | ATGACTATCATATGTTATTG+AGG | - | chr3_3:83916384-83916403 | Msa0479090:intron | 25.0% |
| !!! | TACTATGGTTTTTTCTCTAT+AGG | - | chr3_3:83916830-83916849 | Msa0479090:intron | 25.0% |
| !!! | TCTATAGGATTTTGATTTCA+AGG | - | chr3_3:83916845-83916864 | Msa0479090:intron | 25.0% |
| ! | TTAGAGCTTCAATTAAATCA+TGG | + | chr3_3:83917184-83917203 | Msa0479080:intron | 25.0% |
| ! | TCAGTTACATATCTTAAATG+AGG | + | chr3_3:83917687-83917706 | Msa0479080:three_prime_UTR | 25.0% |
| !!! | TGAATCTTTGAAGTAGTTTT+GGG | + | chr3_3:83917798-83917817 | Msa0479080:three_prime_UTR | 25.0% |
| !!! | ATGAATCTTTGAAGTAGTTT+TGG | + | chr3_3:83917799-83917818 | Msa0479080:three_prime_UTR | 25.0% |
| ! | TTGAAATTGAATGTTCCATT+AGG | - | chr3_3:83917918-83917937 | Msa0479090:intron | 25.0% |
| ! | TAATCTCAAGTAATTTACTG+TGG | + | chr3_3:83917960-83917979 | Msa0479080:three_prime_UTR | 25.0% |
| !!! | GGAAAACCTTTAAAATGTTT+TGG | + | chr3_3:83918166-83918185 | Msa0479080:three_prime_UTR | 25.0% |
| !! | TGATAAAACATCTTTTCCAA+AGG | - | chr3_3:83918362-83918381 | Msa0479090:intron | 25.0% |
| ! | ATAGGTTTATACTACAGATT+AGG | - | chr3_3:83918824-83918843 | Msa0479090:CDS | 25.0% |
| ! | TACTACAGATTAGGATATTT+AGG | - | chr3_3:83918833-83918852 | Msa0479090:CDS | 25.0% |
| ! | TGTTTGACATCCAATATAAA+TGG | + | chr3_3:83918861-83918880 | None:intergenic | 25.0% |
| ! | CAGTCATTAAAGAATCTTTA+TGG | - | chr3_3:83918900-83918919 | Msa0479090:CDS | 25.0% |
| ! | ATTAAAGAATCTTTATGGCA+TGG | - | chr3_3:83918905-83918924 | Msa0479090:CDS | 25.0% |
| ! | TCAAATGAAGAAGTTTGTAT+TGG | + | chr3_3:83919724-83919743 | None:intergenic | 25.0% |
| ! | TTCTTCATTTGAATGTGTTT+GGG | - | chr3_3:83919732-83919751 | Msa0479090:CDS | 25.0% |
| ! | GTTCCATTATGTTATTAACT+CGG | + | chr3_3:83919901-83919920 | None:intergenic | 25.0% |
| !!! | TTTGTAAAAGGTACTACTTA+AGG | + | chr3_3:83920108-83920127 | None:intergenic | 25.0% |
| !!! | CGTCTAGTTTTTTTATATTC+TGG | + | chr3_3:83920386-83920405 | None:intergenic | 25.0% |
| ! | ATCAAATATAGAGGTTGTAA+TGG | + | chr3_3:83920620-83920639 | None:intergenic | 25.0% |
| ! | GATCTGATTATCAAATATAG+AGG | + | chr3_3:83920629-83920648 | None:intergenic | 25.0% |
| !!! | GTAATTTTCTGGTGAATATT+GGG | + | chr3_3:83920665-83920684 | None:intergenic | 25.0% |
| ! | TAATTTAGATTGTAATGAGG+TGG | - | chr3_3:83920725-83920744 | Msa0479090:intron | 25.0% |
| ! | AATTTAGATTGTAATGAGGT+GGG | - | chr3_3:83920726-83920745 | Msa0479090:intron | 25.0% |
| ! | TAAAAATATGGTTGTCCATT+AGG | + | chr3_3:83920882-83920901 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr3_3:83921078-83921097 | None:intergenic | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr3_3:83921099-83921118 | None:intergenic | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr3_3:83921100-83921119 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr3_3:83921188-83921207 | None:intergenic | 25.0% |
| ! | TATATAAATAAAGGGGAAAG+TGG | + | chr3_3:83921203-83921222 | None:intergenic | 25.0% |
| ! | TTAATTATCCTGATCAAAAC+AGG | - | chr3_3:83921435-83921454 | Msa0479090:intron | 25.0% |
| ! | TAATTATCCTGATCAAAACA+GGG | - | chr3_3:83921436-83921455 | Msa0479090:intron | 25.0% |
| ! | TCATGAATTCTAGTACAAAA+TGG | + | chr3_3:83921560-83921579 | None:intergenic | 25.0% |
| ! | GAAACACTACTGATTATAGT+AGG | - | chr3_3:83916116-83916135 | Msa0479090:CDS | 30.0% |
| GATGATAAGTGGAAAAGAAT+TGG | - | chr3_3:83916167-83916186 | Msa0479090:intron | 30.0% | |
| TGATAGTCATCATGTATTGA+AGG | + | chr3_3:83916374-83916393 | Msa0479080:intron | 30.0% | |
| ACATAGCAAGTAAAGCATAA+TGG | + | chr3_3:83916417-83916436 | Msa0479080:intron | 30.0% | |
| GCTTATGAAAACTTATCTAC+TGG | + | chr3_3:83916518-83916537 | Msa0479080:intron | 30.0% | |
| ATGAATATGCAAAGAGATCT+AGG | + | chr3_3:83916554-83916573 | Msa0479080:intron | 30.0% | |
| GTATGATATTGCATATTGAC+TGG | - | chr3_3:83916575-83916594 | Msa0479090:intron | 30.0% | |
| TGGTACAGATACAATTATAG+AGG | - | chr3_3:83916710-83916729 | Msa0479090:intron | 30.0% | |
| ! | TTGGTGTTCATACTATACTA+TGG | - | chr3_3:83916815-83916834 | Msa0479090:intron | 30.0% |
| GTATCTCAAATATCTTTCCA+TGG | + | chr3_3:83916991-83917010 | Msa0479080:intron | 30.0% | |
| ! | ACAACAATTTTGGATGTTCA+AGG | - | chr3_3:83917092-83917111 | Msa0479090:intron | 30.0% |
| TTGAAACCCTATAAAGCAAA+GGG | + | chr3_3:83917344-83917363 | Msa0479080:intron | 30.0% | |
| ! | TTTGAAACCCTATAAAGCAA+AGG | + | chr3_3:83917345-83917364 | Msa0479080:intron | 30.0% |
| TCTCTTATTCTACATACTTC+AGG | + | chr3_3:83917431-83917450 | Msa0479080:intron | 30.0% | |
| ! | TTAGACATAGTTCCTTGTTT+AGG | + | chr3_3:83917618-83917637 | Msa0479080:intron | 30.0% |
| CAAATGTTTATCATCAATGC+TGG | - | chr3_3:83917726-83917745 | Msa0479090:intron | 30.0% | |
| !! | TCAACATTTGGTTCTGTTAT+TGG | - | chr3_3:83917995-83918014 | Msa0479090:intron | 30.0% |
| ! | GCAAGACCAAAACATTTTAA+AGG | - | chr3_3:83918157-83918176 | Msa0479090:intron | 30.0% |
| ATTCATACTACATCTTAACC+TGG | - | chr3_3:83918205-83918224 | Msa0479090:intron | 30.0% | |
| GAAATGAAAAACTGTACCTT+TGG | + | chr3_3:83918381-83918400 | Msa0479080:intron | 30.0% | |
| ACTCAGTAACCAAAATTCAA+AGG | + | chr3_3:83918453-83918472 | None:intergenic | 30.0% | |
| GTGATAGTACATTAATCACA+AGG | - | chr3_3:83918595-83918614 | Msa0479090:intron | 30.0% | |
| !!! | AACTGTTTTTATACTCGTCT+AGG | - | chr3_3:83918660-83918679 | Msa0479090:CDS | 30.0% |
| TCAATAATCTTGTCAACCAT+GGG | + | chr3_3:83918745-83918764 | None:intergenic | 30.0% | |
| ATCAATAATCTTGTCAACCA+TGG | + | chr3_3:83918746-83918765 | None:intergenic | 30.0% | |
| GTTGACAAGATTATTGATGT+TGG | - | chr3_3:83918748-83918767 | Msa0479090:CDS | 30.0% | |
| AAATGCTATTGTTCGAACAA+AGG | + | chr3_3:83918994-83919013 | None:intergenic | 30.0% | |
| ! | AATGAGACAAGAAGAACTTT+TGG | - | chr3_3:83919406-83919425 | Msa0479090:intron | 30.0% |
| TCAAGGTAAGTCAAAAGTTA+AGG | - | chr3_3:83919459-83919478 | Msa0479090:intron | 30.0% | |
| ATAAAAATTCCCATGACAGA+TGG | + | chr3_3:83919528-83919547 | None:intergenic | 30.0% | |
| CTTCTTCATTTGAATGTGTT+TGG | - | chr3_3:83919731-83919750 | Msa0479090:CDS | 30.0% | |
| !! | ACATTATTTTGCTTGACAGA+TGG | - | chr3_3:83919850-83919869 | Msa0479090:intron | 30.0% |
| ! | AGATGGATAATGGTACAAAA+TGG | - | chr3_3:83919867-83919886 | Msa0479090:CDS | 30.0% |
| TTCAAATAATCGGCAAGAAT+TGG | + | chr3_3:83920034-83920053 | None:intergenic | 30.0% | |
| !!! | TTATTTTGACTCTCAGCTTT+TGG | + | chr3_3:83920238-83920257 | None:intergenic | 30.0% |
| !!! | AGGAATTCTTTATTTTCTGC+TGG | + | chr3_3:83920446-83920465 | None:intergenic | 30.0% |
| ! | TTTTCAGCCAAACATCTATT+TGG | + | chr3_3:83920521-83920540 | None:intergenic | 30.0% |
| AATGTAGCAAAAGAGATAGT+AGG | - | chr3_3:83920544-83920563 | Msa0479090:intron | 30.0% | |
| TGTAATGGTGAATAGATGTT+GGG | + | chr3_3:83920605-83920624 | None:intergenic | 30.0% | |
| TTGTAATGGTGAATAGATGT+TGG | + | chr3_3:83920606-83920625 | None:intergenic | 30.0% | |
| !! | GGTAATTTTCTGGTGAATAT+TGG | + | chr3_3:83920666-83920685 | None:intergenic | 30.0% |
| !!! | TTTGTTTTTATTTGTGTGGG+TGG | + | chr3_3:83920699-83920718 | None:intergenic | 30.0% |
| !! | AGAGCACACAAATAGTTTTA+TGG | + | chr3_3:83920794-83920813 | None:intergenic | 30.0% |
| CTATTTGTTTGACAACCTAA+TGG | - | chr3_3:83920864-83920883 | Msa0479090:intron | 30.0% | |
| ATATAAGCTAACCTCAAATG+AGG | - | chr3_3:83921333-83921352 | Msa0479090:intron | 30.0% | |
| AGCTATTTATTCCTCATTTG+AGG | + | chr3_3:83921347-83921366 | None:intergenic | 30.0% | |
| GAATAAATAGCTACCCATAA+AGG | - | chr3_3:83921355-83921374 | Msa0479090:intron | 30.0% | |
| !! | AGTAAGAAGTACTGAGAATT+TGG | + | chr3_3:83921767-83921786 | None:intergenic | 30.0% |
| AAAAGAAGCAGCAAAAGTAG+TGG | - | chr3_3:83916248-83916267 | Msa0479090:intron | 35.0% | |
| ! | TGATATTGCATATTGACTGG+TGG | - | chr3_3:83916578-83916597 | Msa0479090:intron | 35.0% |
| GTTGTAGATTCTTGAAAGCA+AGG | - | chr3_3:83916625-83916644 | Msa0479090:intron | 35.0% | |
| TTGAGAAAGCAAAGCTTATG+TGG | - | chr3_3:83916658-83916677 | Msa0479090:intron | 35.0% | |
| TGAGAAAGCAAAGCTTATGT+GGG | - | chr3_3:83916659-83916678 | Msa0479090:intron | 35.0% | |
| TACTATCCACATGGTTATCA+TGG | - | chr3_3:83916888-83916907 | Msa0479090:intron | 35.0% | |
| GAAGACCTGTTTATATTGAG+AGG | - | chr3_3:83916925-83916944 | Msa0479090:intron | 35.0% | |
| ! | TAGGAAAAGTTGATCCCAAT+AGG | - | chr3_3:83916949-83916968 | Msa0479090:intron | 35.0% |
| GTTACTTGCATAAGCCTATT+GGG | + | chr3_3:83916966-83916985 | Msa0479080:intron | 35.0% | |
| AGTTACTTGCATAAGCCTAT+TGG | + | chr3_3:83916967-83916986 | Msa0479080:intron | 35.0% | |
| ! | ATATTTGAGATACCATGTGC+AGG | - | chr3_3:83916998-83917017 | Msa0479090:intron | 35.0% |
| ! | TATTTGAGATACCATGTGCA+GGG | - | chr3_3:83916999-83917018 | Msa0479090:intron | 35.0% |
| AACATCCAAAATTGTTGTGC+TGG | + | chr3_3:83917090-83917109 | Msa0479080:intron | 35.0% | |
| GTTTAGATTGACAGTGAGTA+TGG | - | chr3_3:83917142-83917161 | Msa0479090:intron | 35.0% | |
| TGGACTAATGGTGAATTTAG+CGG | + | chr3_3:83917224-83917243 | Msa0479080:intron | 35.0% | |
| TCTTCTTCCCTTTGCTTTAT+AGG | - | chr3_3:83917334-83917353 | Msa0479090:intron | 35.0% | |
| CTTCTTCCCTTTGCTTTATA+GGG | - | chr3_3:83917335-83917354 | Msa0479090:intron | 35.0% | |
| TTCCATAGAAGCTTAAAACC+AGG | + | chr3_3:83917753-83917772 | Msa0479080:three_prime_UTR | 35.0% | |
| TGAATGTTCCATTAGGTTCT+TGG | - | chr3_3:83917925-83917944 | Msa0479090:intron | 35.0% | |
| ACTTGTTTCCAAGAACCTAA+TGG | + | chr3_3:83917936-83917955 | Msa0479080:three_prime_UTR | 35.0% | |
| !!! | AAAATGTTTTGGTCTTGCCA+TGG | + | chr3_3:83918155-83918174 | Msa0479080:three_prime_UTR | 35.0% |
| !! | CTACATCTTAACCTGGTTTT+TGG | - | chr3_3:83918212-83918231 | Msa0479090:intron | 35.0% |
| ATCGTAACAATTTCCAACGA+CGG | - | chr3_3:83918321-83918340 | Msa0479090:intron | 35.0% | |
| !!! | GAATTTTGGTTACTGAGTAC+AGG | - | chr3_3:83918455-83918474 | Msa0479090:intron | 35.0% |
| ATAGAATTCCCACATGCTTT+GGG | + | chr3_3:83918540-83918559 | None:intergenic | 35.0% | |
| !! | CTAGGCAAGATTTGTTGATA+AGG | - | chr3_3:83918678-83918697 | Msa0479090:CDS | 35.0% |
| !! | GCAAGATTTGTTGATAAGGT+TGG | - | chr3_3:83918682-83918701 | Msa0479090:CDS | 35.0% |
| GTATGATGAATATGTTCCCA+TGG | - | chr3_3:83918726-83918745 | Msa0479090:CDS | 35.0% | |
| GATTATTGATGTTGGACCAA+AGG | - | chr3_3:83918756-83918775 | Msa0479090:CDS | 35.0% | |
| !! | AAAATCTGCTTTTGGTAACC+AGG | - | chr3_3:83918934-83918953 | Msa0479090:intron | 35.0% |
| TGTTCGAACAAAGGCAAAAA+GGG | + | chr3_3:83918985-83919004 | None:intergenic | 35.0% | |
| TTGTTCGAACAAAGGCAAAA+AGG | + | chr3_3:83918986-83919005 | None:intergenic | 35.0% | |
| AATAGCATTTCGTGTGACAA+AGG | - | chr3_3:83919004-83919023 | Msa0479090:intron | 35.0% | |
| ATAGCATTTCGTGTGACAAA+GGG | - | chr3_3:83919005-83919024 | Msa0479090:intron | 35.0% | |
| TGTGACAAAGGGAGTAAAAA+GGG | - | chr3_3:83919016-83919035 | Msa0479090:intron | 35.0% | |
| !!! | CATTTTTTTCAAGCTCACTG+AGG | + | chr3_3:83919100-83919119 | None:intergenic | 35.0% |
| AGAAGTTCTTAACAATGACG+TGG | + | chr3_3:83919286-83919305 | None:intergenic | 35.0% | |
| GCATGTTCAATTTCCTAAAC+AGG | - | chr3_3:83919367-83919386 | Msa0479090:intron | 35.0% | |
| ! | TTTTGGCATACATAGACAGT+CGG | - | chr3_3:83919423-83919442 | Msa0479090:intron | 35.0% |
| TCGGGAAAAAAGCAAATTCA+AGG | - | chr3_3:83919442-83919461 | Msa0479090:intron | 35.0% | |
| TTAGTACTTACCATCTGTCA+TGG | - | chr3_3:83919515-83919534 | Msa0479090:CDS | 35.0% | |
| TAGTACTTACCATCTGTCAT+GGG | - | chr3_3:83919516-83919535 | Msa0479090:CDS | 35.0% | |
| TAAAGAGACAGTGTACATGA+CGG | - | chr3_3:83919586-83919605 | Msa0479090:intron | 35.0% | |
| !!! | ACATCCATGCTGTTTTAACT+TGG | - | chr3_3:83919769-83919788 | Msa0479090:intron | 35.0% |
| ATTGCCAAGTTAAAACAGCA+TGG | + | chr3_3:83919776-83919795 | None:intergenic | 35.0% | |
| !!! | ATGCTGTTTTAACTTGGCAA+TGG | - | chr3_3:83919775-83919794 | Msa0479090:intron | 35.0% |
| TTTGCTTGACAGATGGATAA+TGG | - | chr3_3:83919857-83919876 | Msa0479090:CDS | 35.0% | |
| TAATGGTACAAAATGGCACA+AGG | - | chr3_3:83919874-83919893 | Msa0479090:CDS | 35.0% | |
| GGACCGAGTTAATAACATAA+TGG | - | chr3_3:83919895-83919914 | Msa0479090:intron | 35.0% | |
| GGAACAAACATAATCAGCAA+TGG | - | chr3_3:83919916-83919935 | Msa0479090:intron | 35.0% | |
| AAAGTTGAGAGGTGAGAAAA+AGG | + | chr3_3:83919988-83920007 | None:intergenic | 35.0% | |
| CATAGAAGACTGCTATAAAG+TGG | - | chr3_3:83920337-83920356 | Msa0479090:intron | 35.0% | |
| ! | TATTTGGAACATGGTGAACA+GGG | + | chr3_3:83920505-83920524 | None:intergenic | 35.0% |
| ! | CCAAACATCTATTTGGAACA+TGG | + | chr3_3:83920514-83920533 | None:intergenic | 35.0% |
| CCATGTTCCAAATAGATGTT+TGG | - | chr3_3:83920511-83920530 | Msa0479090:intron | 35.0% | |
| TACTCCTTTCCAGAATTAGT+TGG | + | chr3_3:83920771-83920790 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr3_3:83921064-83921083 | None:intergenic | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | - | chr3_3:83921232-83921251 | Msa0479090:intron | 35.0% | |
| TTTCCAGAGCAATCCTTTAT+GGG | + | chr3_3:83921371-83921390 | None:intergenic | 35.0% | |
| ATTTCCAGAGCAATCCTTTA+TGG | + | chr3_3:83921372-83921391 | None:intergenic | 35.0% | |
| TCTGTACAGATTGCAAAAGA+AGG | - | chr3_3:83921398-83921417 | Msa0479090:intron | 35.0% | |
| !!! | TTTCATACCCTGTTTTGATC+AGG | + | chr3_3:83921446-83921465 | None:intergenic | 35.0% |
| ! | TAGTACAAAATGGACTTGTG+GGG | + | chr3_3:83921550-83921569 | None:intergenic | 35.0% |
| ! | CTAGTACAAAATGGACTTGT+GGG | + | chr3_3:83921551-83921570 | None:intergenic | 35.0% |
| ! | TCTAGTACAAAATGGACTTG+TGG | + | chr3_3:83921552-83921571 | None:intergenic | 35.0% |
| AAAAATCCTAGTGTATCCCT+TGG | - | chr3_3:83921588-83921607 | Msa0479090:CDS | 35.0% | |
| AAAATCCTAGTGTATCCCTT+GGG | - | chr3_3:83921589-83921608 | Msa0479090:CDS | 35.0% | |
| CAGATTGAGAGTTCATTGTA+CGG | - | chr3_3:83921643-83921662 | Msa0479090:CDS | 35.0% | |
| TACTTCTTACTGCATTACAC+TGG | - | chr3_3:83921776-83921795 | Msa0479090:five_prime_UTR | 35.0% | |
| ACTTCTTACTGCATTACACT+GGG | - | chr3_3:83921777-83921796 | Msa0479090:five_prime_UTR | 35.0% | |
| TGAAAGAAGAGAGAGTTCAG+AGG | - | chr3_3:83916145-83916164 | Msa0479090:CDS | 40.0% | |
| AGAGTTCAGAGGATGATAAG+TGG | - | chr3_3:83916156-83916175 | Msa0479090:CDS | 40.0% | |
| AACTTGTCGAACATCCTCAA+TGG | + | chr3_3:83916294-83916313 | Msa0479080:intron | 40.0% | |
| TTTCCTCCATTGGATCATGT+TGG | + | chr3_3:83916685-83916704 | Msa0479080:intron | 40.0% | |
| ATCCAATGGAGGAAAGACTA+TGG | - | chr3_3:83916690-83916709 | Msa0479090:intron | 40.0% | |
| TACCATAGTCTTTCCTCCAT+TGG | + | chr3_3:83916695-83916714 | Msa0479080:intron | 40.0% | |
| AACCATGTGGATAGTACTTC+TGG | + | chr3_3:83916884-83916903 | Msa0479080:intron | 40.0% | |
| CCTAGCCTCTCAATATAAAC+AGG | + | chr3_3:83916933-83916952 | Msa0479080:intron | 40.0% | |
| CCTGTTTATATTGAGAGGCT+AGG | - | chr3_3:83916930-83916949 | Msa0479090:intron | 40.0% | |
| GCTTATGCAAGTAACTACCA+TGG | - | chr3_3:83916971-83916990 | Msa0479090:intron | 40.0% | |
| ! | TTTTCTCAAAACCCTGCACA+TGG | + | chr3_3:83917013-83917032 | Msa0479080:intron | 40.0% |
| ! | AGGTTCCAGCACAACAATTT+TGG | - | chr3_3:83917082-83917101 | Msa0479090:intron | 40.0% |
| ! | AATTTTGGATGTTCAAGGCG+TGG | - | chr3_3:83917097-83917116 | Msa0479090:intron | 40.0% |
| CAGTGAGTATGGCTTAATCA+TGG | - | chr3_3:83917153-83917172 | Msa0479090:intron | 40.0% | |
| TGAGTATGGCTTAATCATGG+CGG | - | chr3_3:83917156-83917175 | Msa0479090:intron | 40.0% | |
| AGTGCATGACTTTGGACTAA+TGG | + | chr3_3:83917236-83917255 | Msa0479080:intron | 40.0% | |
| GTCCAAAGTCATGCACTAAA+TGG | - | chr3_3:83917239-83917258 | Msa0479090:intron | 40.0% | |
| AGCCATTTAGTGCATGACTT+TGG | + | chr3_3:83917244-83917263 | Msa0479080:intron | 40.0% | |
| TTGAGAAGCTCACCTAAACA+AGG | - | chr3_3:83917603-83917622 | Msa0479090:intron | 40.0% | |
| TTTATCATCAATGCTGGTCC+TGG | - | chr3_3:83917732-83917751 | Msa0479090:intron | 40.0% | |
| !!! | GTCCTGGTTTTAAGCTTCTA+TGG | - | chr3_3:83917748-83917767 | Msa0479090:intron | 40.0% |
| CATAAGGGTTCTTACCTCAA+TGG | + | chr3_3:83917875-83917894 | Msa0479080:three_prime_UTR | 40.0% | |
| TACTTGAGATTATCGATGCG+AGG | - | chr3_3:83917968-83917987 | Msa0479090:intron | 40.0% | |
| ATGCGAGGTAACTCAACATT+TGG | - | chr3_3:83917983-83918002 | Msa0479090:intron | 40.0% | |
| AGTGAGCTACCAGAATTTCT+AGG | - | chr3_3:83918077-83918096 | Msa0479090:intron | 40.0% | |
| GCTGTATGACATCCGATAAA+GGG | - | chr3_3:83918129-83918148 | Msa0479090:intron | 40.0% | |
| GCAAAGTAGAACCAAAAACC+AGG | + | chr3_3:83918226-83918245 | Msa0479080:three_prime_UTR | 40.0% | |
| AATAGTTGTCTGCATGCAGA+TGG | - | chr3_3:83918266-83918285 | Msa0479090:intron | 40.0% | |
| TCGTAACAATTTCCAACGAC+GGG | - | chr3_3:83918322-83918341 | Msa0479090:intron | 40.0% | |
| TACTGAGTACAGGCAAAAAG+TGG | - | chr3_3:83918465-83918484 | Msa0479090:intron | 40.0% | |
| AAAAGTGGCTGTACATCTAC+TGG | - | chr3_3:83918480-83918499 | Msa0479090:intron | 40.0% | |
| CATAGAATTCCCACATGCTT+TGG | + | chr3_3:83918541-83918560 | None:intergenic | 40.0% | |
| CTTGGACATGAGTCAGTATA+GGG | + | chr3_3:83918566-83918585 | None:intergenic | 40.0% | |
| TCTTGGACATGAGTCAGTAT+AGG | + | chr3_3:83918567-83918586 | None:intergenic | 40.0% | |
| TACTATCACTTGCCTCTTCT+TGG | + | chr3_3:83918584-83918603 | None:intergenic | 40.0% | |
| ! | GTTGATAAGGTTGGTCATAC+CGG | - | chr3_3:83918691-83918710 | Msa0479090:CDS | 40.0% |
| GGAACATATTCATCATACGC+AGG | + | chr3_3:83918724-83918743 | None:intergenic | 40.0% | |
| TTTGAGCCAAATGAGTTTCG+TGG | + | chr3_3:83918796-83918815 | None:intergenic | 40.0% | |
| ! | CGAAACTCATTTGGCTCAAA+AGG | - | chr3_3:83918796-83918815 | Msa0479090:CDS | 40.0% |
| TTGGCTCAAAAGGTGAGAAT+AGG | - | chr3_3:83918806-83918825 | Msa0479090:CDS | 40.0% | |
| ! | GGATGCAGAAAATCTGCTTT+TGG | - | chr3_3:83918926-83918945 | Msa0479090:CDS | 40.0% |
| GTGTGACAAAGGGAGTAAAA+AGG | - | chr3_3:83919015-83919034 | Msa0479090:intron | 40.0% | |
| TTCAAGGTAGAAGATGAGGA+GGG | + | chr3_3:83919074-83919093 | None:intergenic | 40.0% | |
| TTTCAAGGTAGAAGATGAGG+AGG | + | chr3_3:83919075-83919094 | None:intergenic | 40.0% | |
| AGTTTATCGTGTGGATGCAT+TGG | - | chr3_3:83919184-83919203 | Msa0479090:intron | 40.0% | |
| AGAGCTCATTGCTACAAAGA+AGG | - | chr3_3:83919211-83919230 | Msa0479090:intron | 40.0% | |
| TTTGGCATACATAGACAGTC+GGG | - | chr3_3:83919424-83919443 | Msa0479090:intron | 40.0% | |
| ! | TCACCTCTCAACTTTTCCTT+AGG | - | chr3_3:83919993-83920012 | Msa0479090:intron | 40.0% |
| ACTCCTAAGGAAAAGTTGAG+AGG | + | chr3_3:83919999-83920018 | None:intergenic | 40.0% | |
| GCAAGAATTGGTTGACTAGA+GGG | + | chr3_3:83920022-83920041 | None:intergenic | 40.0% | |
| TGGTGAAACTGACATGATGA+GGG | + | chr3_3:83920075-83920094 | None:intergenic | 40.0% | |
| TTGGTGAAACTGACATGATG+AGG | + | chr3_3:83920076-83920095 | None:intergenic | 40.0% | |
| CTACTTAAGGTGACAGTGAT+TGG | + | chr3_3:83920095-83920114 | None:intergenic | 40.0% | |
| ! | TACAGAAGCATGTCAGTGTA+AGG | - | chr3_3:83920273-83920292 | Msa0479090:intron | 40.0% |
| ! | CTATTTGGAACATGGTGAAC+AGG | + | chr3_3:83920506-83920525 | None:intergenic | 40.0% |
| ! | TGTGTGGGTGGTATGTATTT+TGG | + | chr3_3:83920687-83920706 | None:intergenic | 40.0% |
| ACGAAAACCAAAGCAATGGA+GGG | - | chr3_3:83920923-83920942 | Msa0479090:CDS | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | + | chr3_3:83921063-83921082 | None:intergenic | 40.0% | |
| ! | CCAAACTGGCTCAGATAAAA+CGG | - | chr3_3:83921246-83921265 | Msa0479090:intron | 40.0% |
| ! | CAAACTGGCTCAGATAAAAC+GGG | - | chr3_3:83921247-83921266 | Msa0479090:intron | 40.0% |
| CCATGTTTGCACAATTATGC+TGG | + | chr3_3:83921508-83921527 | None:intergenic | 40.0% | |
| CCAGCATAATTGTGCAAACA+TGG | - | chr3_3:83921505-83921524 | Msa0479090:CDS | 40.0% | |
| AAATCCTAGTGTATCCCTTG+GGG | - | chr3_3:83921590-83921609 | Msa0479090:CDS | 40.0% | |
| TGAACTCTCAATCTGTTACG+AGG | + | chr3_3:83921638-83921657 | None:intergenic | 40.0% | |
| CTGAAGTCACGGTCAAAAAT+AGG | - | chr3_3:83921731-83921750 | Msa0479090:exon | 40.0% | |
| GACAATTATGACTACACAGC+TGG | - | chr3_3:83921809-83921828 | Msa0479090:five_prime_UTR | 40.0% | |
| TCGAACATCCTCAATGGACA+GGG | + | chr3_3:83916288-83916307 | Msa0479080:intron | 45.0% | |
| TGAGGATGTTCGACAAGTTG+AGG | - | chr3_3:83916295-83916314 | Msa0479090:intron | 45.0% | |
| ! | GCATATTGACTGGTGGAATG+TGG | - | chr3_3:83916585-83916604 | Msa0479090:intron | 45.0% |
| !! | GTCCAGAAGTACTATCCACA+TGG | - | chr3_3:83916879-83916898 | Msa0479090:intron | 45.0% |
| TCCACATGGTTATCATGGTG+TGG | - | chr3_3:83916893-83916912 | Msa0479090:intron | 45.0% | |
| TCCACACCATGATAACCATG+TGG | + | chr3_3:83916897-83916916 | Msa0479080:intron | 45.0% | |
| TGGTTATCATGGTGTGGACA+AGG | - | chr3_3:83916899-83916918 | Msa0479090:intron | 45.0% | |
| TTATCATGGTGTGGACAAGG+AGG | - | chr3_3:83916902-83916921 | Msa0479090:intron | 45.0% | |
| TATCATGGTGTGGACAAGGA+GGG | - | chr3_3:83916903-83916922 | Msa0479090:intron | 45.0% | |
| ATAGCTGCCAAGAGACACAT+AGG | - | chr3_3:83917062-83917081 | Msa0479090:intron | 45.0% | |
| GCTCACTGAGAACTTATTGC+TGG | + | chr3_3:83918064-83918083 | Msa0479080:three_prime_UTR | 45.0% | |
| ! | GAGCTACCAGAATTTCTAGG+CGG | - | chr3_3:83918080-83918099 | Msa0479090:intron | 45.0% |
| CAACTACCGCCTAGAAATTC+TGG | + | chr3_3:83918089-83918108 | Msa0479080:three_prime_UTR | 45.0% | |
| TGCACCTGTGTAGATCATGA+TGG | - | chr3_3:83918107-83918126 | Msa0479090:intron | 45.0% | |
| ACAGCCATCATGATCTACAC+AGG | + | chr3_3:83918114-83918133 | Msa0479080:three_prime_UTR | 45.0% | |
| GGCTGTATGACATCCGATAA+AGG | - | chr3_3:83918128-83918147 | Msa0479090:intron | 45.0% | |
| TGCATGCAGATGGTTCTTAG+TGG | - | chr3_3:83918276-83918295 | Msa0479090:intron | 45.0% | |
| CGTAACAATTTCCAACGACG+GGG | - | chr3_3:83918323-83918342 | Msa0479090:intron | 45.0% | |
| GTAACAATTTCCAACGACGG+GGG | - | chr3_3:83918324-83918343 | Msa0479090:intron | 45.0% | |
| !! | TTCCCACATGCTTTGGGATA+GGG | + | chr3_3:83918534-83918553 | None:intergenic | 45.0% |
| !! | ATTCCCACATGCTTTGGGAT+AGG | + | chr3_3:83918535-83918554 | None:intergenic | 45.0% |
| ! | ACTGACTCATGTCCAAGAAG+AGG | - | chr3_3:83918569-83918588 | Msa0479090:intron | 45.0% |
| ATCATACGCAGGAAAACCAC+CGG | + | chr3_3:83918713-83918732 | None:intergenic | 45.0% | |
| GTAACCAGGACTGTTACAGT+GGG | - | chr3_3:83918948-83918967 | Msa0479090:intron | 45.0% | |
| GACAAAGGGAGTAAAAAGGG+AGG | - | chr3_3:83919019-83919038 | Msa0479090:intron | 45.0% | |
| TCAAGGTAGAAGATGAGGAG+GGG | + | chr3_3:83919073-83919092 | None:intergenic | 45.0% | |
| GCGTTTCAAGGTAGAAGATG+AGG | + | chr3_3:83919078-83919097 | None:intergenic | 45.0% | |
| GAATGCTGCAGTTTATCGTG+TGG | - | chr3_3:83919175-83919194 | Msa0479090:intron | 45.0% | |
| ! | TCCTAAACAGGCTTTGTACG+AGG | - | chr3_3:83919379-83919398 | Msa0479090:intron | 45.0% |
| ! | GTGTACATGACGGAGTTGTT+TGG | - | chr3_3:83919596-83919615 | Msa0479090:intron | 45.0% |
| ! | TACATGACGGAGTTGTTTGG+TGG | - | chr3_3:83919599-83919618 | Msa0479090:intron | 45.0% |
| TCTCTCTCTCTCTTTGCACT+GGG | - | chr3_3:83919623-83919642 | Msa0479090:intron | 45.0% | |
| GGCAAGAATTGGTTGACTAG+AGG | + | chr3_3:83920023-83920042 | None:intergenic | 45.0% | |
| AAACTGCGCTGTTCAAGATG+CGG | + | chr3_3:83920157-83920176 | None:intergenic | 45.0% | |
| !! | TTGACTCTCAGCTTTTGGCT+GGG | + | chr3_3:83920233-83920252 | None:intergenic | 45.0% |
| ! | TTTGACTCTCAGCTTTTGGC+TGG | + | chr3_3:83920234-83920253 | None:intergenic | 45.0% |
| !! | TTCTGCTGGTGCTTGTTTTC+TGG | + | chr3_3:83920432-83920451 | None:intergenic | 45.0% |
| GGTGAACAGGGTAGTATAGA+TGG | + | chr3_3:83920493-83920512 | None:intergenic | 45.0% | |
| AAGAGCAGGCCAACTAATTC+TGG | - | chr3_3:83920759-83920778 | Msa0479090:intron | 45.0% | |
| ! | CAGGCCAACTAATTCTGGAA+AGG | - | chr3_3:83920764-83920783 | Msa0479090:intron | 45.0% |
| TGGCACGAAAACCAAAGCAA+TGG | - | chr3_3:83920919-83920938 | Msa0479090:CDS | 45.0% | |
| CACGAAAACCAAAGCAATGG+AGG | - | chr3_3:83920922-83920941 | Msa0479090:CDS | 45.0% | |
| ACTTTCTCCCTCCATTGCTT+TGG | + | chr3_3:83920933-83920952 | None:intergenic | 45.0% | |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | + | chr3_3:83921249-83921268 | None:intergenic | 45.0% |
| CTACCCATAAAGGATTGCTC+TGG | - | chr3_3:83921365-83921384 | Msa0479090:intron | 45.0% | |
| ! | ACAAAATGGACTTGTGGGGT+TGG | + | chr3_3:83921546-83921565 | None:intergenic | 45.0% |
| AATCCTAGTGTATCCCTTGG+GGG | - | chr3_3:83921591-83921610 | Msa0479090:CDS | 45.0% | |
| TTCCTTTGGTCAGCCTAGTT+TGG | + | chr3_3:83921697-83921716 | None:intergenic | 45.0% | |
| ! | CTCAGATCTGGGTTTTCCTT+TGG | + | chr3_3:83921711-83921730 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTCATATT+TGG | - | chr3_3:83916796-83916815 | Msa0479090:intron | 5.0% |
| !! | AAGAAAAATATATAAATAAA+GGG | + | chr3_3:83921211-83921230 | None:intergenic | 5.0% |
| !! | TAAGAAAAATATATAAATAA+AGG | + | chr3_3:83921212-83921231 | None:intergenic | 5.0% |
| GCAGCAAAAGTAGTGGCAGT+AGG | - | chr3_3:83916255-83916274 | Msa0479090:intron | 50.0% | |
| GAGCAATTCCCTGTCCATTG+AGG | - | chr3_3:83916277-83916296 | Msa0479090:intron | 50.0% | |
| GTCGAACATCCTCAATGGAC+AGG | + | chr3_3:83916289-83916308 | Msa0479080:intron | 50.0% | |
| TGACTGGTGGAATGTGGACA+TGG | - | chr3_3:83916591-83916610 | Msa0479090:intron | 50.0% | |
| TGTGGGCCAACATGATCCAA+TGG | - | chr3_3:83916676-83916695 | Msa0479090:intron | 50.0% | |
| TTGGCAGCTATAGAGCAAGC+TGG | + | chr3_3:83917053-83917072 | Msa0479080:intron | 50.0% | |
| GCTGGAACCTATGTGTCTCT+TGG | + | chr3_3:83917072-83917091 | Msa0479080:intron | 50.0% | |
| GATGAGTTCTCGAGCAGACT+TGG | + | chr3_3:83917375-83917394 | Msa0479080:intron | 50.0% | |
| TGACATCCGATAAAGGGCCA+TGG | - | chr3_3:83918135-83918154 | Msa0479090:intron | 50.0% | |
| GTCTTGCCATGGCCCTTTAT+CGG | + | chr3_3:83918144-83918163 | Msa0479080:three_prime_UTR | 50.0% | |
| AATTTCCAACGACGGGGGTA+GGG | - | chr3_3:83918329-83918348 | Msa0479090:intron | 50.0% | |
| ATCCCCTATCCCAAAGCATG+TGG | - | chr3_3:83918528-83918547 | Msa0479090:intron | 50.0% | |
| TCCCCTATCCCAAAGCATGT+GGG | - | chr3_3:83918529-83918548 | Msa0479090:intron | 50.0% | |
| !! | TCCCACATGCTTTGGGATAG+GGG | + | chr3_3:83918533-83918552 | None:intergenic | 50.0% |
| ! | GATAAGGTTGGTCATACCGG+TGG | - | chr3_3:83918694-83918713 | Msa0479090:CDS | 50.0% |
| GCAGCACCACGAAACTCATT+TGG | - | chr3_3:83918787-83918806 | Msa0479090:CDS | 50.0% | |
| GGTAACCAGGACTGTTACAG+TGG | - | chr3_3:83918947-83918966 | Msa0479090:intron | 50.0% | |
| !! | GGGGTTTGGCTTTGTGAATC+TGG | + | chr3_3:83919054-83919073 | None:intergenic | 50.0% |
| GTAGAAGATGAGGAGGGGTT+TGG | + | chr3_3:83919068-83919087 | None:intergenic | 50.0% | |
| ! | AAGCTCACTGAGGCGTTTCA+AGG | + | chr3_3:83919090-83919109 | None:intergenic | 50.0% |
| TGCCATGCCAAGTGAGAAAG+AGG | - | chr3_3:83919145-83919164 | Msa0479090:CDS | 50.0% | |
| CTCCTCTTTCTCACTTGGCA+TGG | + | chr3_3:83919150-83919169 | None:intergenic | 50.0% | |
| AGCAGCTCCTCTTTCTCACT+TGG | + | chr3_3:83919155-83919174 | None:intergenic | 50.0% | |
| GCCTCGTACAAAGCCTGTTT+AGG | + | chr3_3:83919383-83919402 | None:intergenic | 50.0% | |
| TGTCTGTAAAGCAGTGCTGC+TGG | - | chr3_3:83919563-83919582 | Msa0479090:intron | 50.0% | |
| CTCTCTCTCTCTCTTTGCAC+TGG | - | chr3_3:83919622-83919641 | Msa0479090:intron | 50.0% | |
| GTTGACTAGAGGGACTCCTA+AGG | + | chr3_3:83920012-83920031 | None:intergenic | 50.0% | |
| CTGTTCAAGATGCGGGCAAA+AGG | + | chr3_3:83920149-83920168 | None:intergenic | 50.0% | |
| AACTGCGCTGTTCAAGATGC+GGG | + | chr3_3:83920156-83920175 | None:intergenic | 50.0% | |
| TGGGTGAGATACTGAAGAGC+AGG | - | chr3_3:83920745-83920764 | Msa0479090:intron | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr3_3:83921059-83921078 | None:intergenic | 50.0% | |
| CTGGCTCAGATAAAACGGGA+CGG | - | chr3_3:83921251-83921270 | Msa0479090:intron | 50.0% | |
| CTCAGATAAAACGGGACGGA+GGG | - | chr3_3:83921255-83921274 | Msa0479090:intron | 50.0% | |
| !! | CGGAGGGAGTATCTGATATC+AGG | - | chr3_3:83921271-83921290 | Msa0479090:intron | 50.0% |
| CTGATATCAGGCTACCAGCA+AGG | - | chr3_3:83921283-83921302 | Msa0479090:intron | 50.0% | |
| GGGGTTGGATTTGCAGAAGT+AGG | + | chr3_3:83921531-83921550 | None:intergenic | 50.0% | |
| TTCTCTCTCTCTTCCCCCAA+GGG | + | chr3_3:83921607-83921626 | None:intergenic | 50.0% | |
| TTTCTCTCTCTCTTCCCCCA+AGG | + | chr3_3:83921608-83921627 | None:intergenic | 50.0% | |
| TTGGGGGAAGAGAGAGAGAA+AGG | - | chr3_3:83921607-83921626 | Msa0479090:CDS | 50.0% | |
| AGCCAAACTAGGCTGACCAA+AGG | - | chr3_3:83921692-83921711 | Msa0479090:CDS | 50.0% | |
| CGTGACTTCAGCTCAGATCT+GGG | + | chr3_3:83921722-83921741 | None:intergenic | 50.0% | |
| CCAGATCTGAGCTGAAGTCA+CGG | - | chr3_3:83921720-83921739 | Msa0479090:CDS | 50.0% | |
| GGGCCAACATGATCCAATGG+AGG | - | chr3_3:83916679-83916698 | Msa0479090:intron | 55.0% | |
| CAATTTCCAACGACGGGGGT+AGG | - | chr3_3:83918328-83918347 | Msa0479090:intron | 55.0% | |
| !! | GGTGCTGCTTGCTTCTCCTT+TGG | + | chr3_3:83918775-83918794 | None:intergenic | 55.0% |
| GATGCCCACTGTAACAGTCC+TGG | + | chr3_3:83918955-83918974 | None:intergenic | 55.0% | |
| ! | CAGCGCAGTTTTGCTGACGT+CGG | - | chr3_3:83920166-83920185 | Msa0479090:intron | 55.0% |
| AAGAGATACTCCCTCCGTCC+CGG | - | chr3_3:83921042-83921061 | Msa0479090:intron | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | + | chr3_3:83921055-83921074 | None:intergenic | 55.0% | |
| GCTCAGATAAAACGGGACGG+AGG | - | chr3_3:83921254-83921273 | Msa0479090:intron | 55.0% | |
| GTCAGCACTGCAAACCTTGC+TGG | + | chr3_3:83921300-83921319 | None:intergenic | 55.0% | |
| CTTCCCCCAAGGGATACACT+AGG | + | chr3_3:83921597-83921616 | None:intergenic | 55.0% | |
| AGTCACGCCACAGCCAAACT+AGG | - | chr3_3:83921681-83921700 | Msa0479090:CDS | 55.0% | |
| TGGTCAGCCTAGTTTGGCTG+TGG | + | chr3_3:83921691-83921710 | None:intergenic | 55.0% | |
| CCGTGACTTCAGCTCAGATC+TGG | + | chr3_3:83921723-83921742 | None:intergenic | 55.0% | |
| AATCACCCTACCCCCGTCGT+TGG | + | chr3_3:83918337-83918356 | Msa0479080:intron | 60.0% | |
| CTTTGCACTGGGCGTGTGTG+TGG | - | chr3_3:83919634-83919653 | Msa0479090:intron | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | + | chr3_3:83921056-83921075 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83916011 | 83921835 | 83916011 | ID=Msa0479090;Name=Msa0479090 |
| chr3_3 | mRNA | 83916011 | 83921835 | 83916011 | ID=Msa0479090-mRNA-1;Parent=Msa0479090;Name=Msa0479090-mRNA-1;_AED=0.27;_eAED=0.31;_QI=87|0.66|0.69|1|0.83|0.92|13|0|605 |
| chr3_3 | exon | 83916011 | 83916175 | 83916011 | ID=Msa0479090-mRNA-1:exon:23786;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83918383 | 83918457 | 83918383 | ID=Msa0479090-mRNA-1:exon:23785;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83918614 | 83918946 | 83918614 | ID=Msa0479090-mRNA-1:exon:23784;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83919029 | 83919164 | 83919029 | ID=Msa0479090-mRNA-1:exon:23783;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83919230 | 83919369 | 83919230 | ID=Msa0479090-mRNA-1:exon:23782;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83919463 | 83919561 | 83919463 | ID=Msa0479090-mRNA-1:exon:23781;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83919668 | 83919767 | 83919668 | ID=Msa0479090-mRNA-1:exon:23780;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83919857 | 83919906 | 83919857 | ID=Msa0479090-mRNA-1:exon:23779;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83920028 | 83920129 | 83920028 | ID=Msa0479090-mRNA-1:exon:23778;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83920413 | 83920490 | 83920413 | ID=Msa0479090-mRNA-1:exon:23777;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83920866 | 83920994 | 83920866 | ID=Msa0479090-mRNA-1:exon:23776;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83921115 | 83921214 | 83921115 | ID=Msa0479090-mRNA-1:exon:23775;Parent=Msa0479090-mRNA-1 |
| chr3_3 | exon | 83921441 | 83921835 | 83921441 | ID=Msa0479090-mRNA-1:exon:23774;Parent=Msa0479090-mRNA-1 |
| chr3_3 | five_prime_UTR | 83921749 | 83921835 | 83921749 | ID=Msa0479090-mRNA-1:five_prime_utr;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83921441 | 83921748 | 83921441 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83921115 | 83921214 | 83921115 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83920866 | 83920994 | 83920866 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83920413 | 83920490 | 83920413 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83920028 | 83920129 | 83920028 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83919857 | 83919906 | 83919857 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83919668 | 83919767 | 83919668 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83919463 | 83919561 | 83919463 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83919230 | 83919369 | 83919230 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83919029 | 83919164 | 83919029 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83918614 | 83918946 | 83918614 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83918383 | 83918457 | 83918383 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| chr3_3 | CDS | 83916011 | 83916175 | 83916011 | ID=Msa0479090-mRNA-1:cds;Parent=Msa0479090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
