Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384540 | XP_013462148.1 | 96.774 | 93 | 3 | 0 | 11 | 103 | 4 | 96 | 4.57e-53 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384540 | sp|F4IHJ0|SFH8_ARATH | 62.376 | 101 | 35 | 1 | 6 | 103 | 13 | 113 | 6.24e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384540 | A0A072V497 | 96.774 | 93 | 3 | 0 | 11 | 103 | 4 | 96 | 2.18e-53 | 185 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061150 | Msa0384540 | 0.808965 | 2.389869e-50 | -8.615850e-47 |
| Msa0130520 | Msa0384540 | 0.827830 | 1.259253e-54 | -8.615850e-47 |
| Msa0377010 | Msa0384540 | 0.828074 | 1.100159e-54 | -8.615850e-47 |
| Msa0384540 | Msa0429950 | 0.808194 | 3.490530e-50 | -8.615850e-47 |
| Msa0384540 | Msa0435000 | 0.835834 | 1.332089e-56 | -8.615850e-47 |
| Msa0384540 | Msa0436190 | 0.813408 | 2.598965e-51 | -8.615850e-47 |
| Msa0384540 | Msa0468130 | 0.802011 | 6.867935e-49 | -8.615850e-47 |
| Msa0384540 | Msa0479040 | 0.847364 | 1.211595e-59 | -8.615850e-47 |
| Msa0384540 | Msa0479090 | 0.863521 | 2.345848e-64 | -8.615850e-47 |
| Msa0384540 | Msa0479940 | 0.857174 | 1.953248e-62 | -8.615850e-47 |
| Msa0384540 | Msa0500720 | 0.809089 | 2.248322e-50 | -8.615850e-47 |
| Msa0384540 | Msa0579370 | 0.829997 | 3.763206e-55 | -8.615850e-47 |
| Msa0384540 | Msa0614990 | 0.827966 | 1.168484e-54 | -8.615850e-47 |
| Msa0384540 | Msa0650730 | 0.805602 | 1.233261e-49 | -8.615850e-47 |
| Msa0384540 | Msa0696420 | 0.819103 | 1.384384e-52 | -8.615850e-47 |
| Msa0384540 | Msa0709670 | 0.854823 | 9.522562e-62 | -8.615850e-47 |
| Msa0384540 | Msa0755080 | 0.800688 | 1.281703e-48 | -8.615850e-47 |
| Msa0384540 | Msa0937330 | 0.826055 | 3.346025e-54 | -8.615850e-47 |
| Msa0384540 | Msa0993240 | 0.811322 | 7.418069e-51 | -8.615850e-47 |
| Msa0384540 | Msa1036910 | 0.806942 | 6.437781e-50 | -8.615850e-47 |
| Msa0384540 | Msa1094430 | 0.801044 | 1.084120e-48 | -8.615850e-47 |
| Msa0384540 | Msa1211000 | 0.803914 | 2.777121e-49 | -8.615850e-47 |
| Msa0384540 | Msa1229850 | 0.808318 | 3.285819e-50 | -8.615850e-47 |
| Msa0384540 | Msa1307740 | 0.801653 | 8.135312e-49 | -8.615850e-47 |
| Msa0384540 | Msa1350690 | 0.829926 | 3.916563e-55 | -8.615850e-47 |
| Msa0384540 | Msa1360280 | 0.802373 | 5.784448e-49 | -8.615850e-47 |
| Msa0384540 | Msa1445400 | -0.800272 | 1.557674e-48 | -8.615850e-47 |
| Msa0241740 | Msa0384540 | 0.800559 | 1.361680e-48 | -8.615850e-47 |
| Msa0266210 | Msa0384540 | 0.829400 | 5.259119e-55 | -8.615850e-47 |
| Msa0287670 | Msa0384540 | 0.831539 | 1.576303e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384540 | MtrunA17_Chr3g0141821 | 96.774 | 93 | 3 | 0 | 11 | 103 | 4 | 96 | 4.21e-57 | 185 |
| Msa0384540 | MtrunA17_Chr1g0155521 | 64.286 | 98 | 27 | 1 | 14 | 103 | 18 | 115 | 8.67e-32 | 117 |
| Msa0384540 | MtrunA17_Chr3g0144911 | 60.417 | 96 | 32 | 1 | 14 | 103 | 18 | 113 | 3.96e-31 | 114 |
| Msa0384540 | MtrunA17_Chr4g0035391 | 51.042 | 96 | 38 | 2 | 14 | 103 | 18 | 110 | 4.38e-20 | 84.0 |
| Msa0384540 | MtrunA17_Chr5g0404711 | 56.579 | 76 | 24 | 2 | 31 | 103 | 10 | 79 | 1.31e-17 | 76.6 |
| Msa0384540 | MtrunA17_Chr3g0080051 | 52.174 | 92 | 38 | 3 | 17 | 103 | 15 | 105 | 1.61e-17 | 76.6 |
| Msa0384540 | MtrunA17_Chr3g0144891 | 54.762 | 84 | 35 | 1 | 20 | 103 | 20 | 100 | 2.95e-14 | 67.4 |
| Msa0384540 | MtrunA17_Chr8g0372651 | 51.899 | 79 | 29 | 2 | 25 | 103 | 13 | 82 | 5.42e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384540 | AT2G21520.2 | 62.376 | 101 | 35 | 1 | 6 | 103 | 17 | 117 | 5.64e-32 | 118 |
| Msa0384540 | AT2G21520.3 | 62.376 | 101 | 35 | 1 | 6 | 103 | 17 | 117 | 5.64e-32 | 118 |
| Msa0384540 | AT2G21520.1 | 62.376 | 101 | 35 | 1 | 6 | 103 | 13 | 113 | 6.35e-32 | 117 |
| Msa0384540 | AT4G39170.1 | 60.204 | 98 | 31 | 2 | 12 | 103 | 16 | 111 | 2.19e-29 | 110 |
| Msa0384540 | AT4G39170.2 | 60.204 | 98 | 31 | 2 | 12 | 103 | 16 | 111 | 2.55e-29 | 110 |
| Msa0384540 | AT2G21540.6 | 57.143 | 84 | 33 | 1 | 20 | 103 | 18 | 98 | 5.54e-21 | 86.7 |
| Msa0384540 | AT2G21540.2 | 57.143 | 84 | 33 | 1 | 20 | 103 | 18 | 98 | 5.54e-21 | 86.7 |
| Msa0384540 | AT2G21540.1 | 57.143 | 84 | 33 | 1 | 20 | 103 | 18 | 98 | 5.54e-21 | 86.7 |
| Msa0384540 | AT2G21540.4 | 57.143 | 84 | 33 | 1 | 20 | 103 | 18 | 98 | 5.54e-21 | 86.7 |
| Msa0384540 | AT2G21540.3 | 57.143 | 84 | 33 | 1 | 20 | 103 | 18 | 98 | 6.26e-21 | 86.7 |
| Msa0384540 | AT2G21540.5 | 57.143 | 84 | 33 | 1 | 20 | 103 | 18 | 98 | 6.26e-21 | 86.7 |
| Msa0384540 | AT4G39180.1 | 57.647 | 85 | 32 | 2 | 20 | 103 | 18 | 99 | 6.28e-20 | 84.0 |
| Msa0384540 | AT4G39180.3 | 57.647 | 85 | 32 | 2 | 20 | 103 | 18 | 99 | 6.53e-20 | 84.0 |
| Msa0384540 | AT4G39180.2 | 57.647 | 85 | 32 | 2 | 20 | 103 | 18 | 99 | 6.53e-20 | 84.0 |
| Msa0384540 | AT4G34580.2 | 55.422 | 83 | 35 | 1 | 21 | 103 | 11 | 91 | 2.66e-18 | 79.3 |
| Msa0384540 | AT4G34580.1 | 55.422 | 83 | 35 | 1 | 21 | 103 | 11 | 91 | 2.66e-18 | 79.3 |
| Msa0384540 | AT1G55690.3 | 50.549 | 91 | 37 | 2 | 13 | 103 | 22 | 104 | 5.49e-17 | 75.5 |
| Msa0384540 | AT1G55690.2 | 50.549 | 91 | 37 | 2 | 13 | 103 | 22 | 104 | 5.82e-17 | 75.5 |
| Msa0384540 | AT1G55690.4 | 50.549 | 91 | 37 | 2 | 13 | 103 | 22 | 104 | 5.82e-17 | 75.5 |
| Msa0384540 | AT1G55690.1 | 50.549 | 91 | 37 | 2 | 13 | 103 | 22 | 104 | 5.82e-17 | 75.5 |
| Msa0384540 | AT1G55690.5 | 50.549 | 91 | 37 | 2 | 13 | 103 | 22 | 104 | 5.82e-17 | 75.5 |
| Msa0384540 | AT4G36490.1 | 55.263 | 76 | 27 | 3 | 29 | 103 | 12 | 81 | 1.18e-16 | 74.3 |
| Msa0384540 | AT1G75370.2 | 54.455 | 101 | 37 | 3 | 12 | 103 | 16 | 116 | 1.49e-15 | 71.2 |
| Msa0384540 | AT1G75370.1 | 54.455 | 101 | 37 | 3 | 12 | 103 | 16 | 116 | 1.54e-15 | 71.2 |
| Msa0384540 | AT3G24840.7 | 51.163 | 86 | 38 | 2 | 20 | 103 | 23 | 106 | 3.70e-15 | 70.1 |
| Msa0384540 | AT3G24840.3 | 51.163 | 86 | 38 | 2 | 20 | 103 | 23 | 106 | 3.70e-15 | 70.1 |
| Msa0384540 | AT3G24840.5 | 51.163 | 86 | 38 | 2 | 20 | 103 | 23 | 106 | 3.70e-15 | 70.1 |
| Msa0384540 | AT3G24840.1 | 51.163 | 86 | 38 | 2 | 20 | 103 | 23 | 106 | 3.77e-15 | 70.1 |
| Msa0384540 | AT3G24840.6 | 51.163 | 86 | 38 | 2 | 20 | 103 | 23 | 106 | 3.77e-15 | 70.1 |
| Msa0384540 | AT3G24840.4 | 51.163 | 86 | 38 | 2 | 20 | 103 | 23 | 106 | 3.77e-15 | 70.1 |
| Msa0384540 | AT3G24840.2 | 51.163 | 86 | 38 | 2 | 20 | 103 | 23 | 106 | 3.77e-15 | 70.1 |
| Msa0384540 | AT5G56160.1 | 46.067 | 89 | 40 | 2 | 23 | 108 | 19 | 102 | 7.30e-15 | 69.3 |
| Msa0384540 | AT5G56160.3 | 46.067 | 89 | 40 | 2 | 23 | 108 | 19 | 102 | 7.30e-15 | 69.3 |
| Msa0384540 | AT5G56160.2 | 46.067 | 89 | 40 | 2 | 23 | 108 | 19 | 102 | 8.26e-15 | 69.3 |
| Msa0384540 | AT2G16380.2 | 44.444 | 90 | 37 | 3 | 20 | 103 | 9 | 91 | 7.62e-13 | 63.5 |
| Msa0384540 | AT2G16380.1 | 44.444 | 90 | 37 | 3 | 20 | 103 | 9 | 91 | 7.62e-13 | 63.5 |
| Msa0384540 | AT1G19650.1 | 47.368 | 95 | 41 | 3 | 15 | 103 | 16 | 107 | 1.10e-12 | 63.2 |
| Msa0384540 | AT1G19650.3 | 45.455 | 99 | 45 | 3 | 15 | 107 | 16 | 111 | 1.15e-12 | 63.2 |
| Msa0384540 | AT2G18180.2 | 53.947 | 76 | 25 | 4 | 30 | 103 | 17 | 84 | 1.43e-12 | 62.8 |
| Msa0384540 | AT2G18180.1 | 53.947 | 76 | 25 | 4 | 30 | 103 | 17 | 84 | 1.45e-12 | 62.8 |
Find 14 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATGCATCATGCAAATTA+AGG | 0.298711 | 3_1:+87721153 | Msa0384540:CDS |
| GATGATAAGTGGAAAAGAAT+TGG | 0.351511 | 3_1:+87721110 | Msa0384540:CDS |
| GAAACACTACTGATTATAGT+AGG | 0.409598 | 3_1:+87721059 | Msa0384540:CDS |
| GTCGAACATCCTCAATGGAC+AGG | 0.479812 | 3_1:-87721229 | None:intergenic |
| ATGACTATCATATGTTATTG+AGG | 0.481600 | 3_1:+87721327 | Msa0384540:CDS |
| AGAGTTCAGAGGATGATAAG+TGG | 0.489773 | 3_1:+87721099 | Msa0384540:CDS |
| TGATAGTCATCATGTATTGA+AGG | 0.523730 | 3_1:-87721314 | None:intergenic |
| AACTTGTCGAACATCCTCAA+TGG | 0.528444 | 3_1:-87721234 | None:intergenic |
| TGAGGATGTTCGACAAGTTG+AGG | 0.556408 | 3_1:+87721238 | Msa0384540:CDS |
| GCAGCAAAAGTAGTGGCAGT+AGG | 0.581849 | 3_1:+87721198 | Msa0384540:CDS |
| GAGCAATTCCCTGTCCATTG+AGG | 0.600815 | 3_1:+87721220 | Msa0384540:CDS |
| AAAAGAAGCAGCAAAAGTAG+TGG | 0.618855 | 3_1:+87721191 | Msa0384540:CDS |
| TCGAACATCCTCAATGGACA+GGG | 0.623693 | 3_1:-87721228 | None:intergenic |
| TGAAAGAAGAGAGAGTTCAG+AGG | 0.630165 | 3_1:+87721088 | Msa0384540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTCAATTAATTTTCA+TGG | - | chr3_1:87721397-87721416 | None:intergenic | 10.0% |
| !!! | AATTAATTGAAAAATTGTTT+TGG | + | chr3_1:87721401-87721420 | Msa0384540:intron | 10.0% |
| !!! | AATTTTTCAATTAATTTTCA+TGG | - | chr3_1:87721397-87721416 | None:intergenic | 10.0% |
| !!! | AATTAATTGAAAAATTGTTT+TGG | + | chr3_1:87721401-87721420 | Msa0384540:intron | 10.0% |
| !!! | TTATTCTTTTTCATGAATTT+AGG | + | chr3_1:87720967-87720986 | Msa0384540:five_prime_UTR | 15.0% |
| !! | ATATAAATATAAATCGTGAA+AGG | - | chr3_1:87722135-87722154 | None:intergenic | 15.0% |
| !!! | TTATTCTTTTTCATGAATTT+AGG | + | chr3_1:87720967-87720986 | Msa0384540:five_prime_UTR | 15.0% |
| !! | ATATAAATATAAATCGTGAA+AGG | - | chr3_1:87722135-87722154 | None:intergenic | 15.0% |
| !! | ATATTATCCCTGATTTAATT+AGG | + | chr3_1:87721790-87721809 | Msa0384540:intron | 20.0% |
| !! | TATTATCCCTGATTTAATTA+GGG | + | chr3_1:87721791-87721810 | Msa0384540:intron | 20.0% |
| !!! | AAAGAGTACAAAATAGAAAA+GGG | - | chr3_1:87721892-87721911 | None:intergenic | 20.0% |
| !!! | AAAAGAGTACAAAATAGAAA+AGG | - | chr3_1:87721893-87721912 | None:intergenic | 20.0% |
| !!! | TTCTATTTTGTACTCTTTTT+TGG | + | chr3_1:87721894-87721913 | Msa0384540:intron | 20.0% |
| !!! | ATATAAAATTTTGATGCTGT+TGG | + | chr3_1:87721921-87721940 | Msa0384540:intron | 20.0% |
| !! | AAAAGATCATCAATACTAAT+TGG | - | chr3_1:87721984-87722003 | None:intergenic | 20.0% |
| !!! | TGATGTGTATTCAATATTTT+GGG | + | chr3_1:87722047-87722066 | Msa0384540:intron | 20.0% |
| !! | TAACCATATGAAATTGTATT+GGG | - | chr3_1:87722087-87722106 | None:intergenic | 20.0% |
| !! | ATAACCATATGAAATTGTAT+TGG | - | chr3_1:87722088-87722107 | None:intergenic | 20.0% |
| !! | AACGTCAACAAATATATTAT+CGG | - | chr3_1:87722368-87722387 | None:intergenic | 20.0% |
| !! | ATATTATCCCTGATTTAATT+AGG | + | chr3_1:87721790-87721809 | Msa0384540:intron | 20.0% |
| !! | TATTATCCCTGATTTAATTA+GGG | + | chr3_1:87721791-87721810 | Msa0384540:intron | 20.0% |
| !!! | AAAGAGTACAAAATAGAAAA+GGG | - | chr3_1:87721892-87721911 | None:intergenic | 20.0% |
| !!! | AAAAGAGTACAAAATAGAAA+AGG | - | chr3_1:87721893-87721912 | None:intergenic | 20.0% |
| !!! | TTCTATTTTGTACTCTTTTT+TGG | + | chr3_1:87721894-87721913 | Msa0384540:intron | 20.0% |
| !!! | ATATAAAATTTTGATGCTGT+TGG | + | chr3_1:87721921-87721940 | Msa0384540:intron | 20.0% |
| !! | AAAAGATCATCAATACTAAT+TGG | - | chr3_1:87721984-87722003 | None:intergenic | 20.0% |
| !!! | TGATGTGTATTCAATATTTT+GGG | + | chr3_1:87722047-87722066 | Msa0384540:intron | 20.0% |
| !! | TAACCATATGAAATTGTATT+GGG | - | chr3_1:87722087-87722106 | None:intergenic | 20.0% |
| !! | ATAACCATATGAAATTGTAT+TGG | - | chr3_1:87722088-87722107 | None:intergenic | 20.0% |
| !! | AACGTCAACAAATATATTAT+CGG | - | chr3_1:87722368-87722387 | None:intergenic | 20.0% |
| ! | TAAATGCATCATGCAAATTA+AGG | + | chr3_1:87721153-87721172 | Msa0384540:CDS | 25.0% |
| ! | ATGACTATCATATGTTATTG+AGG | + | chr3_1:87721327-87721346 | Msa0384540:CDS | 25.0% |
| ! | ATTATCCCTGATTTAATTAG+GGG | + | chr3_1:87721792-87721811 | Msa0384540:intron | 25.0% |
| !! | AAGAGTACAAAATAGAAAAG+GGG | - | chr3_1:87721891-87721910 | None:intergenic | 25.0% |
| !! | GTGATGTGTATTCAATATTT+TGG | + | chr3_1:87722046-87722065 | Msa0384540:intron | 25.0% |
| !!! | ATTAGATTTTGGTCATTTGA+TGG | - | chr3_1:87722210-87722229 | None:intergenic | 25.0% |
| ! | TGAGAATAGATTTACTATAG+TGG | - | chr3_1:87722345-87722364 | None:intergenic | 25.0% |
| ! | GTTGACGTTGTTTAAATTTA+AGG | + | chr3_1:87722379-87722398 | Msa0384540:intron | 25.0% |
| ! | TAAATGCATCATGCAAATTA+AGG | + | chr3_1:87721153-87721172 | Msa0384540:CDS | 25.0% |
| ! | ATGACTATCATATGTTATTG+AGG | + | chr3_1:87721327-87721346 | Msa0384540:CDS | 25.0% |
| ! | ATTATCCCTGATTTAATTAG+GGG | + | chr3_1:87721792-87721811 | Msa0384540:intron | 25.0% |
| !! | AAGAGTACAAAATAGAAAAG+GGG | - | chr3_1:87721891-87721910 | None:intergenic | 25.0% |
| !! | GTGATGTGTATTCAATATTT+TGG | + | chr3_1:87722046-87722065 | Msa0384540:intron | 25.0% |
| !!! | ATTAGATTTTGGTCATTTGA+TGG | - | chr3_1:87722210-87722229 | None:intergenic | 25.0% |
| ! | TGAGAATAGATTTACTATAG+TGG | - | chr3_1:87722345-87722364 | None:intergenic | 25.0% |
| ! | GTTGACGTTGTTTAAATTTA+AGG | + | chr3_1:87722379-87722398 | Msa0384540:intron | 25.0% |
| ! | GAAACACTACTGATTATAGT+AGG | + | chr3_1:87721059-87721078 | Msa0384540:CDS | 30.0% |
| GATGATAAGTGGAAAAGAAT+TGG | + | chr3_1:87721110-87721129 | Msa0384540:CDS | 30.0% | |
| TGATAGTCATCATGTATTGA+AGG | - | chr3_1:87721317-87721336 | None:intergenic | 30.0% | |
| ACATAGCAAGTAAAGCATAA+TGG | - | chr3_1:87721360-87721379 | None:intergenic | 30.0% | |
| ATGAATATGCAAAGAGATCT+AGG | - | chr3_1:87721497-87721516 | None:intergenic | 30.0% | |
| GTATGATATTGCATATTGAC+TGG | + | chr3_1:87721518-87721537 | Msa0384540:intron | 30.0% | |
| !!! | TTCCCTCTTTTGAGTTATTT+TGG | + | chr3_1:87721763-87721782 | Msa0384540:intron | 30.0% |
| GACCAAAATAACTCAAAAGA+GGG | - | chr3_1:87721768-87721787 | None:intergenic | 30.0% | |
| AGACCAAAATAACTCAAAAG+AGG | - | chr3_1:87721769-87721788 | None:intergenic | 30.0% | |
| !!! | CTTTTGAAAAGGTTTTGGTT+CGG | + | chr3_1:87721863-87721882 | Msa0384540:intron | 30.0% |
| AGAGTACAAAATAGAAAAGG+GGG | - | chr3_1:87721890-87721909 | None:intergenic | 30.0% | |
| ACTCCCAATACAATTTCATA+TGG | + | chr3_1:87722081-87722100 | Msa0384540:intron | 30.0% | |
| AATGGGTATAGAGATATTCA+TGG | - | chr3_1:87722181-87722200 | None:intergenic | 30.0% | |
| ! | GAAACACTACTGATTATAGT+AGG | + | chr3_1:87721059-87721078 | Msa0384540:CDS | 30.0% |
| GATGATAAGTGGAAAAGAAT+TGG | + | chr3_1:87721110-87721129 | Msa0384540:CDS | 30.0% | |
| TGATAGTCATCATGTATTGA+AGG | - | chr3_1:87721317-87721336 | None:intergenic | 30.0% | |
| ACATAGCAAGTAAAGCATAA+TGG | - | chr3_1:87721360-87721379 | None:intergenic | 30.0% | |
| ATGAATATGCAAAGAGATCT+AGG | - | chr3_1:87721497-87721516 | None:intergenic | 30.0% | |
| GTATGATATTGCATATTGAC+TGG | + | chr3_1:87721518-87721537 | Msa0384540:intron | 30.0% | |
| !!! | TTCCCTCTTTTGAGTTATTT+TGG | + | chr3_1:87721763-87721782 | Msa0384540:intron | 30.0% |
| GACCAAAATAACTCAAAAGA+GGG | - | chr3_1:87721768-87721787 | None:intergenic | 30.0% | |
| AGACCAAAATAACTCAAAAG+AGG | - | chr3_1:87721769-87721788 | None:intergenic | 30.0% | |
| !!! | CTTTTGAAAAGGTTTTGGTT+CGG | + | chr3_1:87721863-87721882 | Msa0384540:intron | 30.0% |
| AGAGTACAAAATAGAAAAGG+GGG | - | chr3_1:87721890-87721909 | None:intergenic | 30.0% | |
| ACTCCCAATACAATTTCATA+TGG | + | chr3_1:87722081-87722100 | Msa0384540:intron | 30.0% | |
| AATGGGTATAGAGATATTCA+TGG | - | chr3_1:87722181-87722200 | None:intergenic | 30.0% | |
| AAAAGAAGCAGCAAAAGTAG+TGG | + | chr3_1:87721191-87721210 | Msa0384540:CDS | 35.0% | |
| GCTTATGAGAACTTATCTAC+TGG | - | chr3_1:87721461-87721480 | None:intergenic | 35.0% | |
| ! | TGATATTGCATATTGACTGG+TGG | + | chr3_1:87721521-87721540 | Msa0384540:intron | 35.0% |
| GTTGTAGATTCTTGAAAGCA+AGG | + | chr3_1:87721568-87721587 | Msa0384540:intron | 35.0% | |
| TTGAGAAAGCAAAGCTTATG+TGG | + | chr3_1:87721601-87721620 | Msa0384540:intron | 35.0% | |
| TGAGAAAGCAAAGCTTATGT+GGG | + | chr3_1:87721602-87721621 | Msa0384540:intron | 35.0% | |
| ACTCAAAAGAGGGAAAAGAA+AGG | - | chr3_1:87721758-87721777 | None:intergenic | 35.0% | |
| ACTCTCCCCTAATTAAATCA+GGG | - | chr3_1:87721800-87721819 | None:intergenic | 35.0% | |
| TACTCTCCCCTAATTAAATC+AGG | - | chr3_1:87721801-87721820 | None:intergenic | 35.0% | |
| ! | TAATTAGGGGAGAGTACATT+AGG | + | chr3_1:87721805-87721824 | Msa0384540:intron | 35.0% |
| AGAGTACATTAGGAATAGGT+TGG | + | chr3_1:87721815-87721834 | Msa0384540:intron | 35.0% | |
| GAGTACATTAGGAATAGGTT+GGG | + | chr3_1:87721816-87721835 | Msa0384540:intron | 35.0% | |
| !! | AAGTTCAGCACCTTTTGAAA+AGG | + | chr3_1:87721852-87721871 | Msa0384540:intron | 35.0% |
| !! | AGCACCTTTTGAAAAGGTTT+TGG | + | chr3_1:87721858-87721877 | Msa0384540:intron | 35.0% |
| ! | CGAACCAAAACCTTTTCAAA+AGG | - | chr3_1:87721865-87721884 | None:intergenic | 35.0% |
| !! | CAATATTTTGGGTGCTCTAA+TGG | + | chr3_1:87722058-87722077 | Msa0384540:intron | 35.0% |
| ATAGAGATATTCATGGAGTC+TGG | - | chr3_1:87722174-87722193 | None:intergenic | 35.0% | |
| !! | TCATTTGATGGTGGAACAAT+GGG | - | chr3_1:87722198-87722217 | None:intergenic | 35.0% |
| !! | AGATTTTGGTCATTTGATGG+TGG | - | chr3_1:87722207-87722226 | None:intergenic | 35.0% |
| ATGAATGCTGACACTTTGAA+CGG | - | chr3_1:87722242-87722261 | None:intergenic | 35.0% | |
| AGCAATATTAGTAAGAGCAG+AGG | + | chr3_1:87722273-87722292 | Msa0384540:intron | 35.0% | |
| AAAAGAAGCAGCAAAAGTAG+TGG | + | chr3_1:87721191-87721210 | Msa0384540:CDS | 35.0% | |
| GCTTATGAGAACTTATCTAC+TGG | - | chr3_1:87721461-87721480 | None:intergenic | 35.0% | |
| ! | TGATATTGCATATTGACTGG+TGG | + | chr3_1:87721521-87721540 | Msa0384540:intron | 35.0% |
| GTTGTAGATTCTTGAAAGCA+AGG | + | chr3_1:87721568-87721587 | Msa0384540:intron | 35.0% | |
| TTGAGAAAGCAAAGCTTATG+TGG | + | chr3_1:87721601-87721620 | Msa0384540:intron | 35.0% | |
| TGAGAAAGCAAAGCTTATGT+GGG | + | chr3_1:87721602-87721621 | Msa0384540:intron | 35.0% | |
| ACTCAAAAGAGGGAAAAGAA+AGG | - | chr3_1:87721758-87721777 | None:intergenic | 35.0% | |
| ACTCTCCCCTAATTAAATCA+GGG | - | chr3_1:87721800-87721819 | None:intergenic | 35.0% | |
| TACTCTCCCCTAATTAAATC+AGG | - | chr3_1:87721801-87721820 | None:intergenic | 35.0% | |
| ! | TAATTAGGGGAGAGTACATT+AGG | + | chr3_1:87721805-87721824 | Msa0384540:intron | 35.0% |
| AGAGTACATTAGGAATAGGT+TGG | + | chr3_1:87721815-87721834 | Msa0384540:intron | 35.0% | |
| GAGTACATTAGGAATAGGTT+GGG | + | chr3_1:87721816-87721835 | Msa0384540:intron | 35.0% | |
| !! | AAGTTCAGCACCTTTTGAAA+AGG | + | chr3_1:87721852-87721871 | Msa0384540:intron | 35.0% |
| !! | AGCACCTTTTGAAAAGGTTT+TGG | + | chr3_1:87721858-87721877 | Msa0384540:intron | 35.0% |
| ! | CGAACCAAAACCTTTTCAAA+AGG | - | chr3_1:87721865-87721884 | None:intergenic | 35.0% |
| !! | CAATATTTTGGGTGCTCTAA+TGG | + | chr3_1:87722058-87722077 | Msa0384540:intron | 35.0% |
| ATAGAGATATTCATGGAGTC+TGG | - | chr3_1:87722174-87722193 | None:intergenic | 35.0% | |
| !! | TCATTTGATGGTGGAACAAT+GGG | - | chr3_1:87722198-87722217 | None:intergenic | 35.0% |
| !! | AGATTTTGGTCATTTGATGG+TGG | - | chr3_1:87722207-87722226 | None:intergenic | 35.0% |
| ATGAATGCTGACACTTTGAA+CGG | - | chr3_1:87722242-87722261 | None:intergenic | 35.0% | |
| AGCAATATTAGTAAGAGCAG+AGG | + | chr3_1:87722273-87722292 | Msa0384540:intron | 35.0% | |
| TGAAAGAAGAGAGAGTTCAG+AGG | + | chr3_1:87721088-87721107 | Msa0384540:CDS | 40.0% | |
| AGAGTTCAGAGGATGATAAG+TGG | + | chr3_1:87721099-87721118 | Msa0384540:CDS | 40.0% | |
| AACTTGTCGAACATCCTCAA+TGG | - | chr3_1:87721237-87721256 | None:intergenic | 40.0% | |
| TTTCCTCCATTGGATCATGT+TGG | - | chr3_1:87721628-87721647 | None:intergenic | 40.0% | |
| !! | AAGGTGCTGAACTTGAAGTT+GGG | - | chr3_1:87721846-87721865 | None:intergenic | 40.0% |
| !! | AAAGGTGCTGAACTTGAAGT+TGG | - | chr3_1:87721847-87721866 | None:intergenic | 40.0% |
| !! | GTCATTTGATGGTGGAACAA+TGG | - | chr3_1:87722199-87722218 | None:intergenic | 40.0% |
| TGAATGCTGACACTTTGAAC+GGG | - | chr3_1:87722241-87722260 | None:intergenic | 40.0% | |
| TGAAAGAAGAGAGAGTTCAG+AGG | + | chr3_1:87721088-87721107 | Msa0384540:CDS | 40.0% | |
| AGAGTTCAGAGGATGATAAG+TGG | + | chr3_1:87721099-87721118 | Msa0384540:CDS | 40.0% | |
| AACTTGTCGAACATCCTCAA+TGG | - | chr3_1:87721237-87721256 | None:intergenic | 40.0% | |
| TTTCCTCCATTGGATCATGT+TGG | - | chr3_1:87721628-87721647 | None:intergenic | 40.0% | |
| !! | AAGGTGCTGAACTTGAAGTT+GGG | - | chr3_1:87721846-87721865 | None:intergenic | 40.0% |
| !! | AAAGGTGCTGAACTTGAAGT+TGG | - | chr3_1:87721847-87721866 | None:intergenic | 40.0% |
| !! | GTCATTTGATGGTGGAACAA+TGG | - | chr3_1:87722199-87722218 | None:intergenic | 40.0% |
| TGAATGCTGACACTTTGAAC+GGG | - | chr3_1:87722241-87722260 | None:intergenic | 40.0% | |
| TCGAACATCCTCAATGGACA+GGG | - | chr3_1:87721231-87721250 | None:intergenic | 45.0% | |
| TGAGGATGTTCGACAAGTTG+AGG | + | chr3_1:87721238-87721257 | Msa0384540:CDS | 45.0% | |
| ! | GCATATTGACTGGTGGAATG+TGG | + | chr3_1:87721528-87721547 | Msa0384540:intron | 45.0% |
| ! | GGGGAGAGTACATTAGGAAT+AGG | + | chr3_1:87721811-87721830 | Msa0384540:intron | 45.0% |
| TCTGATCTGTAAGAGACCAG+AGG | + | chr3_1:87722008-87722027 | Msa0384540:intron | 45.0% | |
| CTGATCTGTAAGAGACCAGA+GGG | + | chr3_1:87722009-87722028 | Msa0384540:intron | 45.0% | |
| ! | GGGAGTGGGCAATTAGATTT+TGG | - | chr3_1:87722221-87722240 | None:intergenic | 45.0% |
| GTAAGAGCAGAGGATAGCAA+AGG | + | chr3_1:87722283-87722302 | Msa0384540:intron | 45.0% | |
| AACACGACACCCATGCATAA+CGG | + | chr3_1:87722315-87722334 | Msa0384540:intron | 45.0% | |
| AGTGGCAATCCGTTATGCAT+GGG | - | chr3_1:87722327-87722346 | None:intergenic | 45.0% | |
| TAGTGGCAATCCGTTATGCA+TGG | - | chr3_1:87722328-87722347 | None:intergenic | 45.0% | |
| TCGAACATCCTCAATGGACA+GGG | - | chr3_1:87721231-87721250 | None:intergenic | 45.0% | |
| TGAGGATGTTCGACAAGTTG+AGG | + | chr3_1:87721238-87721257 | Msa0384540:CDS | 45.0% | |
| ! | GCATATTGACTGGTGGAATG+TGG | + | chr3_1:87721528-87721547 | Msa0384540:intron | 45.0% |
| ! | GGGGAGAGTACATTAGGAAT+AGG | + | chr3_1:87721811-87721830 | Msa0384540:intron | 45.0% |
| TCTGATCTGTAAGAGACCAG+AGG | + | chr3_1:87722008-87722027 | Msa0384540:intron | 45.0% | |
| CTGATCTGTAAGAGACCAGA+GGG | + | chr3_1:87722009-87722028 | Msa0384540:intron | 45.0% | |
| ! | GGGAGTGGGCAATTAGATTT+TGG | - | chr3_1:87722221-87722240 | None:intergenic | 45.0% |
| GTAAGAGCAGAGGATAGCAA+AGG | + | chr3_1:87722283-87722302 | Msa0384540:intron | 45.0% | |
| AACACGACACCCATGCATAA+CGG | + | chr3_1:87722315-87722334 | Msa0384540:intron | 45.0% | |
| AGTGGCAATCCGTTATGCAT+GGG | - | chr3_1:87722327-87722346 | None:intergenic | 45.0% | |
| TAGTGGCAATCCGTTATGCA+TGG | - | chr3_1:87722328-87722347 | None:intergenic | 45.0% | |
| !! | GTTTAAAAAAAAAAAAAAAA+AGG | + | chr3_1:87721949-87721968 | Msa0384540:intron | 5.0% |
| !! | GTTTAAAAAAAAAAAAAAAA+AGG | + | chr3_1:87721949-87721968 | Msa0384540:intron | 5.0% |
| GCAGCAAAAGTAGTGGCAGT+AGG | + | chr3_1:87721198-87721217 | Msa0384540:CDS | 50.0% | |
| GAGCAATTCCCTGTCCATTG+AGG | + | chr3_1:87721220-87721239 | Msa0384540:CDS | 50.0% | |
| GTCGAACATCCTCAATGGAC+AGG | - | chr3_1:87721232-87721251 | None:intergenic | 50.0% | |
| TGACTGGTGGAATGTGGACA+TGG | + | chr3_1:87721534-87721553 | Msa0384540:intron | 50.0% | |
| TGTGGGCCAACATGATCCAA+TGG | + | chr3_1:87721619-87721638 | Msa0384540:intron | 50.0% | |
| CGTCTTTAATACGCTCCCTC+TGG | - | chr3_1:87722027-87722046 | None:intergenic | 50.0% | |
| CTGACACTTTGAACGGGAGT+GGG | - | chr3_1:87722235-87722254 | None:intergenic | 50.0% | |
| GCAGCAAAAGTAGTGGCAGT+AGG | + | chr3_1:87721198-87721217 | Msa0384540:CDS | 50.0% | |
| GAGCAATTCCCTGTCCATTG+AGG | + | chr3_1:87721220-87721239 | Msa0384540:CDS | 50.0% | |
| GTCGAACATCCTCAATGGAC+AGG | - | chr3_1:87721232-87721251 | None:intergenic | 50.0% | |
| TGACTGGTGGAATGTGGACA+TGG | + | chr3_1:87721534-87721553 | Msa0384540:intron | 50.0% | |
| TGTGGGCCAACATGATCCAA+TGG | + | chr3_1:87721619-87721638 | Msa0384540:intron | 50.0% | |
| CGTCTTTAATACGCTCCCTC+TGG | - | chr3_1:87722027-87722046 | None:intergenic | 50.0% | |
| CTGACACTTTGAACGGGAGT+GGG | - | chr3_1:87722235-87722254 | None:intergenic | 50.0% | |
| GGGCCAACATGATCCAATGG+AGG | + | chr3_1:87721622-87721641 | Msa0384540:intron | 55.0% | |
| ATGGAGTCTGGTCAGTGACG+TGG | - | chr3_1:87722162-87722181 | None:intergenic | 55.0% | |
| GCTGACACTTTGAACGGGAG+TGG | - | chr3_1:87722236-87722255 | None:intergenic | 55.0% | |
| GGGCCAACATGATCCAATGG+AGG | + | chr3_1:87721622-87721641 | Msa0384540:intron | 55.0% | |
| ATGGAGTCTGGTCAGTGACG+TGG | - | chr3_1:87722162-87722181 | None:intergenic | 55.0% | |
| GCTGACACTTTGAACGGGAG+TGG | - | chr3_1:87722236-87722255 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 87720957 | 87722428 | 87720957 | ID=Msa0384540;Name=Msa0384540 |
| chr3_1 | mRNA | 87720957 | 87722428 | 87720957 | ID=Msa0384540-mRNA-1;Parent=Msa0384540;Name=Msa0384540-mRNA-1;_AED=0.25;_eAED=0.25;_QI=84|0|0.5|0.5|1|1|2|0|111 |
| chr3_1 | exon | 87720957 | 87721348 | 87720957 | ID=Msa0384540-mRNA-1:exon:23567;Parent=Msa0384540-mRNA-1 |
| chr3_1 | exon | 87722401 | 87722428 | 87722401 | ID=Msa0384540-mRNA-1:exon:23568;Parent=Msa0384540-mRNA-1 |
| chr3_1 | five_prime_UTR | 87720957 | 87721040 | 87720957 | ID=Msa0384540-mRNA-1:five_prime_utr;Parent=Msa0384540-mRNA-1 |
| chr3_1 | CDS | 87721041 | 87721348 | 87721041 | ID=Msa0384540-mRNA-1:cds;Parent=Msa0384540-mRNA-1 |
| chr3_1 | CDS | 87722401 | 87722428 | 87722401 | ID=Msa0384540-mRNA-1:cds;Parent=Msa0384540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
