Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377010 | XP_024635502.1 | 86.005 | 443 | 24 | 5 | 1 | 408 | 129 | 568 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377010 | sp|F4JVA6|SFH6_ARATH | 58.936 | 470 | 136 | 10 | 1 | 413 | 145 | 614 | 8.19e-170 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377010 | A0A072V497 | 85.426 | 446 | 27 | 5 | 1 | 411 | 130 | 572 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197180 | Msa0377010 | 0.800045 | 1.732518e-48 | -8.615850e-47 |
| Msa0377010 | Msa0384540 | 0.828074 | 1.100159e-54 | -8.615850e-47 |
| Msa0377010 | Msa0435000 | 0.907584 | 4.329425e-81 | -8.615850e-47 |
| Msa0377010 | Msa0479040 | 0.895451 | 9.464179e-76 | -8.615850e-47 |
| Msa0377010 | Msa0479090 | 0.887053 | 1.999510e-72 | -8.615850e-47 |
| Msa0377010 | Msa0479940 | 0.885083 | 1.103256e-71 | -8.615850e-47 |
| Msa0377010 | Msa0579350 | 0.802657 | 5.056049e-49 | -8.615850e-47 |
| Msa0377010 | Msa0709670 | 0.934604 | 3.122204e-96 | -8.615850e-47 |
| Msa0377010 | Msa0755080 | 0.817983 | 2.484402e-52 | -8.615850e-47 |
| Msa0377010 | Msa0834450 | 0.801711 | 7.916017e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377010 | MtrunA17_Chr3g0141821 | 85.426 | 446 | 27 | 5 | 1 | 411 | 130 | 572 | 0.0 | 754 |
| Msa0377010 | MtrunA17_Chr1g0155521 | 66.453 | 468 | 96 | 7 | 1 | 408 | 149 | 615 | 0.0 | 592 |
| Msa0377010 | MtrunA17_Chr4g0035391 | 56.624 | 468 | 142 | 8 | 1 | 408 | 144 | 610 | 3.17e-175 | 507 |
| Msa0377010 | MtrunA17_Chr3g0144911 | 70.522 | 268 | 76 | 2 | 1 | 265 | 147 | 414 | 3.03e-134 | 396 |
| Msa0377010 | MtrunA17_Chr8g0372651 | 48.718 | 429 | 167 | 10 | 12 | 400 | 127 | 542 | 1.30e-124 | 375 |
| Msa0377010 | MtrunA17_Chr5g0404711 | 47.805 | 410 | 161 | 6 | 1 | 408 | 113 | 471 | 8.82e-124 | 371 |
| Msa0377010 | MtrunA17_Chr4g0035361 | 48.064 | 439 | 150 | 11 | 12 | 400 | 49 | 459 | 3.22e-121 | 364 |
| Msa0377010 | MtrunA17_Chr3g0144891 | 46.953 | 443 | 153 | 10 | 10 | 400 | 143 | 555 | 9.59e-117 | 356 |
| Msa0377010 | MtrunA17_Chr7g0236461 | 68.473 | 203 | 62 | 1 | 1 | 201 | 137 | 339 | 4.75e-99 | 311 |
| Msa0377010 | MtrunA17_Chr5g0399151 | 59.204 | 201 | 80 | 1 | 1 | 199 | 152 | 352 | 6.14e-85 | 270 |
| Msa0377010 | MtrunA17_Chr8g0369291 | 56.303 | 238 | 100 | 3 | 12 | 246 | 138 | 374 | 2.11e-84 | 273 |
| Msa0377010 | MtrunA17_Chr3g0080051 | 49.630 | 270 | 128 | 5 | 10 | 272 | 148 | 416 | 4.13e-84 | 273 |
| Msa0377010 | MtrunA17_Chr4g0035381 | 57.000 | 200 | 84 | 1 | 1 | 198 | 121 | 320 | 6.26e-79 | 252 |
| Msa0377010 | MtrunA17_Chr3g0144901 | 43.316 | 187 | 49 | 3 | 279 | 408 | 4 | 190 | 4.96e-29 | 113 |
| Msa0377010 | MtrunA17_Chr3g0131581 | 32.500 | 160 | 94 | 6 | 19 | 177 | 121 | 267 | 1.25e-12 | 68.2 |
| Msa0377010 | MtrunA17_Chr8g0385691 | 42.857 | 98 | 52 | 3 | 81 | 177 | 153 | 247 | 4.04e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377010 | AT4G39170.1 | 58.936 | 470 | 136 | 10 | 1 | 413 | 145 | 614 | 8.32e-171 | 496 |
| Msa0377010 | AT2G21520.2 | 55.123 | 488 | 147 | 9 | 1 | 419 | 151 | 635 | 6.00e-169 | 492 |
| Msa0377010 | AT2G21520.3 | 55.123 | 488 | 147 | 9 | 1 | 419 | 151 | 635 | 6.00e-169 | 492 |
| Msa0377010 | AT2G21520.1 | 55.123 | 488 | 147 | 9 | 1 | 419 | 147 | 631 | 1.34e-168 | 491 |
| Msa0377010 | AT4G39170.2 | 58.723 | 470 | 135 | 11 | 1 | 413 | 145 | 612 | 4.24e-168 | 489 |
| Msa0377010 | AT1G19650.2 | 54.762 | 462 | 151 | 8 | 1 | 406 | 69 | 528 | 6.52e-154 | 450 |
| Msa0377010 | AT1G19650.1 | 54.762 | 462 | 151 | 8 | 1 | 406 | 141 | 600 | 5.71e-153 | 451 |
| Msa0377010 | AT1G75370.1 | 55.432 | 451 | 143 | 10 | 10 | 407 | 159 | 604 | 3.14e-150 | 444 |
| Msa0377010 | AT1G75370.2 | 55.333 | 450 | 145 | 9 | 10 | 407 | 159 | 604 | 4.40e-149 | 442 |
| Msa0377010 | AT2G18180.5 | 50.801 | 437 | 158 | 10 | 1 | 400 | 20 | 436 | 9.29e-135 | 398 |
| Msa0377010 | AT2G18180.4 | 50.801 | 437 | 158 | 10 | 1 | 400 | 47 | 463 | 2.12e-134 | 398 |
| Msa0377010 | AT2G18180.3 | 50.801 | 437 | 158 | 10 | 1 | 400 | 47 | 463 | 4.10e-134 | 398 |
| Msa0377010 | AT2G18180.2 | 50.801 | 437 | 158 | 10 | 1 | 400 | 118 | 534 | 3.18e-133 | 398 |
| Msa0377010 | AT2G18180.1 | 50.801 | 437 | 158 | 10 | 1 | 400 | 118 | 534 | 5.41e-133 | 397 |
| Msa0377010 | AT4G36490.1 | 50.355 | 423 | 181 | 7 | 1 | 400 | 115 | 531 | 4.18e-130 | 390 |
| Msa0377010 | AT2G21540.3 | 47.754 | 423 | 175 | 8 | 1 | 400 | 132 | 531 | 4.87e-124 | 374 |
| Msa0377010 | AT2G21540.5 | 47.754 | 423 | 175 | 8 | 1 | 400 | 132 | 531 | 4.87e-124 | 374 |
| Msa0377010 | AT2G21540.6 | 47.991 | 423 | 180 | 8 | 1 | 400 | 132 | 537 | 5.24e-124 | 374 |
| Msa0377010 | AT2G21540.2 | 47.991 | 423 | 180 | 8 | 1 | 400 | 132 | 537 | 5.24e-124 | 374 |
| Msa0377010 | AT2G21540.1 | 47.991 | 423 | 180 | 8 | 1 | 400 | 132 | 537 | 5.24e-124 | 374 |
| Msa0377010 | AT2G21540.4 | 47.991 | 423 | 180 | 8 | 1 | 400 | 132 | 537 | 5.24e-124 | 374 |
| Msa0377010 | AT1G19650.3 | 68.182 | 264 | 81 | 2 | 1 | 262 | 141 | 403 | 1.59e-119 | 359 |
| Msa0377010 | AT4G39180.1 | 46.572 | 423 | 190 | 8 | 1 | 400 | 133 | 542 | 5.64e-119 | 361 |
| Msa0377010 | AT4G39180.3 | 46.172 | 418 | 198 | 9 | 1 | 400 | 133 | 541 | 2.18e-118 | 360 |
| Msa0377010 | AT4G39180.2 | 46.172 | 418 | 198 | 9 | 1 | 400 | 133 | 541 | 2.18e-118 | 360 |
| Msa0377010 | AT2G16380.3 | 47.674 | 430 | 188 | 10 | 1 | 406 | 20 | 436 | 1.44e-115 | 349 |
| Msa0377010 | AT2G16380.2 | 47.674 | 430 | 188 | 10 | 1 | 406 | 125 | 541 | 7.92e-115 | 350 |
| Msa0377010 | AT2G16380.1 | 47.674 | 430 | 188 | 10 | 1 | 406 | 125 | 541 | 7.92e-115 | 350 |
| Msa0377010 | AT3G24840.7 | 45.497 | 433 | 176 | 11 | 1 | 395 | 140 | 550 | 1.09e-110 | 341 |
| Msa0377010 | AT3G24840.3 | 45.497 | 433 | 176 | 11 | 1 | 395 | 140 | 550 | 1.09e-110 | 341 |
| Msa0377010 | AT3G24840.5 | 45.497 | 433 | 176 | 11 | 1 | 395 | 140 | 550 | 1.09e-110 | 341 |
| Msa0377010 | AT3G24840.1 | 45.370 | 432 | 177 | 11 | 1 | 395 | 140 | 549 | 2.13e-110 | 340 |
| Msa0377010 | AT3G24840.6 | 45.370 | 432 | 177 | 11 | 1 | 395 | 140 | 549 | 2.13e-110 | 340 |
| Msa0377010 | AT3G24840.4 | 45.370 | 432 | 177 | 11 | 1 | 395 | 140 | 549 | 2.13e-110 | 340 |
| Msa0377010 | AT3G24840.2 | 45.370 | 432 | 177 | 11 | 1 | 395 | 140 | 549 | 2.13e-110 | 340 |
| Msa0377010 | AT4G34580.2 | 71.292 | 209 | 58 | 1 | 1 | 207 | 125 | 333 | 4.12e-110 | 338 |
| Msa0377010 | AT4G34580.1 | 71.292 | 209 | 58 | 1 | 1 | 207 | 125 | 333 | 4.12e-110 | 338 |
| Msa0377010 | AT5G56160.1 | 36.324 | 457 | 228 | 8 | 1 | 408 | 131 | 573 | 2.51e-85 | 275 |
| Msa0377010 | AT5G56160.3 | 36.324 | 457 | 228 | 8 | 1 | 408 | 131 | 573 | 2.51e-85 | 275 |
| Msa0377010 | AT1G55690.3 | 48.829 | 299 | 140 | 7 | 10 | 299 | 147 | 441 | 3.64e-83 | 270 |
| Msa0377010 | AT1G55690.2 | 48.829 | 299 | 140 | 7 | 10 | 299 | 147 | 441 | 3.70e-83 | 271 |
| Msa0377010 | AT1G55690.4 | 48.829 | 299 | 140 | 7 | 10 | 299 | 147 | 441 | 3.70e-83 | 271 |
| Msa0377010 | AT1G55690.1 | 48.829 | 299 | 140 | 7 | 10 | 299 | 147 | 441 | 3.70e-83 | 271 |
| Msa0377010 | AT1G55690.5 | 48.829 | 299 | 140 | 7 | 10 | 299 | 147 | 441 | 3.70e-83 | 271 |
| Msa0377010 | AT5G47510.3 | 57.653 | 196 | 81 | 1 | 2 | 195 | 32 | 227 | 4.12e-83 | 261 |
| Msa0377010 | AT5G56160.2 | 56.744 | 215 | 90 | 2 | 1 | 212 | 131 | 345 | 1.32e-82 | 265 |
| Msa0377010 | AT5G47510.2 | 57.653 | 196 | 81 | 1 | 2 | 195 | 89 | 284 | 1.35e-82 | 261 |
| Msa0377010 | AT5G47510.4 | 57.653 | 196 | 81 | 1 | 2 | 195 | 89 | 284 | 2.66e-82 | 261 |
| Msa0377010 | AT5G47510.1 | 57.653 | 196 | 81 | 1 | 2 | 195 | 88 | 283 | 3.33e-82 | 261 |
Find 103 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATCTTTGAAGTAGTTT+TGG | 0.227191 | 3_1:-77344453 | None:intergenic |
| AGGTTCCAGCACAACAATTT+TGG | 0.228844 | 3_1:+77343746 | Msa0377010:CDS |
| TGAATGTTCCATTAGGTTCT+TGG | 0.246980 | 3_1:+77344582 | Msa0377010:intron |
| GGAAAACCTTTAAAATGTTT+TGG | 0.274087 | 3_1:-77344820 | None:intergenic |
| AAAGTTGAGAGGTGAGAAAA+AGG | 0.283841 | 3_1:-77346713 | Msa0377020:three_prime_UTR |
| GTCTTGCCATGGCCCTTTAT+CGG | 0.290544 | 3_1:-77344798 | None:intergenic |
| GGGGTTTGGCTTTGTGAATC+TGG | 0.297857 | 3_1:-77345705 | None:intergenic |
| AGTTAATATCGATTTGTAAA+AGG | 0.303709 | 3_1:-77346845 | Msa0377020:three_prime_UTR |
| AACCATGTGGATAGTACTTC+TGG | 0.304122 | 3_1:-77343545 | None:intergenic |
| TTCAAATAATCGGCAAGAAT+TGG | 0.317585 | 3_1:-77346759 | Msa0377020:three_prime_UTR |
| CATAGAATTCCCACATGCTT+TGG | 0.329438 | 3_1:-77345192 | None:intergenic |
| AATGAGACAAGAAGAACTTT+TGG | 0.329773 | 3_1:+77346060 | Msa0377010:CDS |
| GGCTGTATGACATCCGATAA+AGG | 0.337655 | 3_1:+77344785 | Msa0377010:CDS |
| CAACTACCGCCTAGAAATTC+TGG | 0.341995 | 3_1:-77344743 | None:intergenic |
| CTTGGACATGAGTCAGTATA+GGG | 0.349834 | 3_1:-77345217 | None:intergenic |
| AGTTACTTGCATAAGCCTAT+TGG | 0.352097 | 3_1:-77343628 | None:intergenic |
| GTGTGACAAAGGGAGTAAAA+AGG | 0.353499 | 3_1:+77345669 | Msa0377010:CDS |
| GTTACTTGCATAAGCCTATT+GGG | 0.369599 | 3_1:-77343627 | None:intergenic |
| GTGTGAATATTTCAAATAAT+CGG | 0.378658 | 3_1:-77346769 | Msa0377020:three_prime_UTR |
| AGTGAGCTACCAGAATTTCT+AGG | 0.380292 | 3_1:+77344734 | Msa0377010:intron |
| GGTGCTGCTTGCTTCTCCTT+TGG | 0.389658 | 3_1:-77345426 | None:intergenic |
| CCTAGCCTCTCAATATAAAC+AGG | 0.390737 | 3_1:-77343594 | None:intergenic |
| ATAGAATTCCCACATGCTTT+GGG | 0.391941 | 3_1:-77345191 | None:intergenic |
| TCTTGGACATGAGTCAGTAT+AGG | 0.395958 | 3_1:-77345218 | None:intergenic |
| TTTGTAAAAGGTACTGCTTA+AGG | 0.396097 | 3_1:-77346833 | Msa0377020:three_prime_UTR |
| AGCAGCTCCTCTTTCTCACT+TGG | 0.399254 | 3_1:-77345806 | None:intergenic |
| CGAAACTCATTTGGCTCAAA+AGG | 0.401215 | 3_1:+77345450 | Msa0377010:CDS |
| GTAGAAGATGAGGAGGGGTT+TGG | 0.414982 | 3_1:-77345719 | None:intergenic |
| CTAGGCAAGATTTGTTGATA+AGG | 0.428115 | 3_1:+77345332 | Msa0377010:intron |
| GCAAGATTTGTTGATAAGGT+TGG | 0.435405 | 3_1:+77345336 | Msa0377010:CDS |
| CTGTTCAAGATGCGGGCAAA+AGG | 0.442884 | 3_1:-77346874 | Msa0377020:three_prime_UTR |
| CTCCTCTTTCTCACTTGGCA+TGG | 0.452012 | 3_1:-77345801 | None:intergenic |
| AAGCTCACTGAGGCGTTTCA+AGG | 0.453754 | 3_1:-77345741 | None:intergenic |
| AAAAGTGGCTATACATCTAC+TGG | 0.454005 | 3_1:+77345134 | Msa0377010:CDS |
| TACTATCCACATGGTTATCA+TGG | 0.455469 | 3_1:+77343552 | Msa0377010:CDS |
| AACATCCAAAATTGTTGTGC+TGG | 0.460482 | 3_1:-77343751 | None:intergenic |
| GCAGCACCACGAAACTCATT+TGG | 0.462925 | 3_1:+77345441 | Msa0377010:CDS |
| TTTATCATCAATGCTGGTCC+TGG | 0.464243 | 3_1:+77344389 | Msa0377010:CDS |
| TTTGAGCCAAATGAGTTTCG+TGG | 0.473382 | 3_1:-77345447 | None:intergenic |
| GTTGATAAGGTTGGTCATAC+CGG | 0.475173 | 3_1:+77345345 | Msa0377010:CDS |
| AACTGCGCTGTTCAAGATGC+GGG | 0.482477 | 3_1:-77346881 | Msa0377020:three_prime_UTR |
| GCTGTATGACATCCGATAAA+GGG | 0.483951 | 3_1:+77344786 | Msa0377010:CDS |
| GATGAGTTCTCGAGCAGACT+TGG | 0.484272 | 3_1:-77344040 | None:intergenic |
| CTGCTTAAGGTGACAGTGAT+TGG | 0.486967 | 3_1:-77346820 | Msa0377020:three_prime_UTR |
| TCGTAACAATTTCCAACGAC+GGG | 0.488552 | 3_1:+77344979 | Msa0377010:CDS |
| TACAGAAGCATGTCAGTGTA+AGG | 0.489548 | 3_1:+77347001 | Msa0377010:CDS |
| ATCAATAATCTTGTCAACCA+TGG | 0.500918 | 3_1:-77345397 | None:intergenic |
| TAGGAAAAGTTGATCCCAAT+AGG | 0.504043 | 3_1:+77343613 | Msa0377010:CDS |
| TGCCATGCCAAGTGAGAAAG+AGG | 0.504746 | 3_1:+77345799 | Msa0377010:CDS |
| GTTGACAAGATTATTGATGT+TGG | 0.506685 | 3_1:+77345402 | Msa0377010:CDS |
| GGCAAGAATTGGTTGACTAG+AGG | 0.535879 | 3_1:-77346748 | Msa0377020:three_prime_UTR |
| CCTGTTTATATTGAGAGGCT+AGG | 0.536718 | 3_1:+77343594 | Msa0377010:CDS |
| CAAATGTTTATCATCAATGC+TGG | 0.541743 | 3_1:+77344383 | Msa0377010:CDS |
| GCAAGAATTGGTTGACTAGA+GGG | 0.542845 | 3_1:-77346747 | Msa0377020:three_prime_UTR |
| TGGTTATCATGGTGTGGACA+AGG | 0.560676 | 3_1:+77343563 | Msa0377010:CDS |
| TAACAATTTCCAACGACGGG+GGG | 0.562654 | 3_1:+77344982 | Msa0377010:CDS |
| ATAGCATTTCGTGTGACAAA+GGG | 0.564103 | 3_1:+77345659 | Msa0377010:intron |
| AATAGCATTTCGTGTGACAA+AGG | 0.565114 | 3_1:+77345658 | Msa0377010:intron |
| TCAATAATCTTGTCAACCAT+GGG | 0.565693 | 3_1:-77345396 | None:intergenic |
| GATTATTGATGTTGGACCAA+AGG | 0.573610 | 3_1:+77345410 | Msa0377010:CDS |
| ATTCCCACATGCTTTGGGAG+AGG | 0.576118 | 3_1:-77345186 | None:intergenic |
| TTTGGCATACATAGACAGTC+GGG | 0.579008 | 3_1:+77346078 | Msa0377010:CDS |
| AGAGCTCATTGCTACAAAGA+AGG | 0.579053 | 3_1:+77345865 | Msa0377010:CDS |
| GGAACATATTCATCATACTC+AGG | 0.584478 | 3_1:-77345375 | None:intergenic |
| GAAGACCTGTTTATATTGAG+AGG | 0.585453 | 3_1:+77343589 | Msa0377010:CDS |
| GCGTTTCAAGGTAGAAGATG+AGG | 0.585982 | 3_1:-77345729 | None:intergenic |
| GTATCTCAAATATCTTTCCA+TGG | 0.587541 | 3_1:-77343652 | None:intergenic |
| ATCACCTCTCCCAAAGCATG+TGG | 0.587564 | 3_1:+77345182 | Msa0377010:CDS |
| AACAATTTCCAACGACGGGG+GGG | 0.590029 | 3_1:+77344983 | Msa0377010:CDS |
| TGCATGCAGATGGTTCTTAG+TGG | 0.596223 | 3_1:+77344933 | Msa0377010:intron |
| TACTTGAGATTATCGATGCG+AGG | 0.602427 | 3_1:+77344625 | Msa0377010:CDS |
| AAACTGCGCTGTTCAAGATG+CGG | 0.602856 | 3_1:-77346882 | Msa0377020:three_prime_UTR |
| AGTTTATCGTGTGGATGCAT+TGG | 0.603746 | 3_1:+77345838 | Msa0377010:CDS |
| GTTGACTAGAGGGACTCCTA+AGG | 0.603746 | 3_1:-77346737 | Msa0377020:three_prime_UTR |
| ATCGTAACAATTTCCAACGA+CGG | 0.608081 | 3_1:+77344978 | Msa0377010:CDS |
| TCCTAAACAGGCTTTGTACG+AGG | 0.609326 | 3_1:+77346033 | Msa0377010:intron |
| GATAAGGTTGGTCATACCGG+TGG | 0.614668 | 3_1:+77345348 | Msa0377010:CDS |
| TGACATCCGATAAAGGGCCA+TGG | 0.616150 | 3_1:+77344792 | Msa0377010:CDS |
| TTCAAGGTAGAAGATGAGGA+GGG | 0.616304 | 3_1:-77345725 | None:intergenic |
| TCAAGGTAGAAGATGAGGAG+GGG | 0.617122 | 3_1:-77345724 | None:intergenic |
| TCCACATGGTTATCATGGTG+TGG | 0.619712 | 3_1:+77343557 | Msa0377010:CDS |
| TTAGCAGCTATAGAGCAAGC+TGG | 0.628886 | 3_1:-77343714 | None:intergenic |
| ATCATACTCAGGAAAACCAC+CGG | 0.629075 | 3_1:-77345364 | None:intergenic |
| TTTCAAGGTAGAAGATGAGG+AGG | 0.637871 | 3_1:-77345726 | None:intergenic |
| GTAACAATTTCCAACGACGG+GGG | 0.643422 | 3_1:+77344981 | Msa0377010:CDS |
| ATAGCTGCTAAGAGACACAT+AGG | 0.643444 | 3_1:+77343726 | Msa0377010:CDS |
| TTCCATAGAAGCTTAAAACC+AGG | 0.645111 | 3_1:-77344407 | None:intergenic |
| GCTTATGCAAGTAACTACCA+TGG | 0.650661 | 3_1:+77343635 | Msa0377010:CDS |
| TTGGTGAAACTGACATGATG+AGG | 0.651013 | 3_1:-77346801 | Msa0377020:three_prime_UTR |
| TATCATGGTGTGGACAAGGA+GGG | 0.652614 | 3_1:+77343567 | Msa0377010:CDS |
| TAATCTCAAGTAATTTACTG+TGG | 0.654334 | 3_1:-77344614 | None:intergenic |
| GTATGATGAATATGTTCCCA+TGG | 0.657630 | 3_1:+77345380 | Msa0377010:CDS |
| CGTAACAATTTCCAACGACG+GGG | 0.667892 | 3_1:+77344980 | Msa0377010:CDS |
| TGCACCTGTGTAGATCATGA+TGG | 0.672539 | 3_1:+77344764 | Msa0377010:CDS |
| GTCCAGAAGTACTATCCACA+TGG | 0.674124 | 3_1:+77343543 | Msa0377010:CDS |
| TCACCTCTCCCAAAGCATGT+GGG | 0.674728 | 3_1:+77345183 | Msa0377010:CDS |
| ACTCCTAAGGAAAAGTTGAG+AGG | 0.675291 | 3_1:-77346724 | Msa0377020:three_prime_UTR |
| TTATCATGGTGTGGACAAGG+AGG | 0.685438 | 3_1:+77343566 | Msa0377010:CDS |
| GAATGCTGCAGTTTATCGTG+TGG | 0.686694 | 3_1:+77345829 | Msa0377010:CDS |
| ACAGCCATCATGATCTACAC+AGG | 0.695056 | 3_1:-77344768 | None:intergenic |
| TGGTGAAACTGACATGATGA+GGG | 0.697684 | 3_1:-77346800 | Msa0377020:three_prime_UTR |
| TCCACACCATGATAACCATG+TGG | 0.713264 | 3_1:-77343558 | None:intergenic |
| GAGCTACCAGAATTTCTAGG+CGG | 0.787653 | 3_1:+77344737 | Msa0377010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATTTAAAATTAATA+TGG | - | chr3_1:77343959-77343978 | None:intergenic | 0.0% |
| !!! | ATATTAATTTTAAATTAATT+AGG | + | chr3_1:77343958-77343977 | Msa0377010:intron | 0.0% |
| !! | TTAAAGCTTCAATTAAATCA+TGG | - | chr3_1:77343852-77343871 | None:intergenic | 20.0% |
| !!! | ATTTTTATAAGATTCCATTG+AGG | + | chr3_1:77344515-77344534 | Msa0377010:intron | 20.0% |
| !! | TATTTCAGGAAAATACATAA+GGG | - | chr3_1:77344547-77344566 | None:intergenic | 20.0% |
| !! | TTATTTCAGGAAAATACATA+AGG | - | chr3_1:77344548-77344567 | None:intergenic | 20.0% |
| !! | TTTCAATTCATCATTATTTC+AGG | - | chr3_1:77344561-77344580 | None:intergenic | 20.0% |
| !! | TTCCACTTATTATTAATCAT+AGG | + | chr3_1:77344839-77344858 | Msa0377010:intron | 20.0% |
| !! | ATCCTATGATTAATAATAAG+TGG | - | chr3_1:77344844-77344863 | None:intergenic | 20.0% |
| !!! | TATTTAGGTTCCATTTATAT+TGG | + | chr3_1:77345502-77345521 | Msa0377010:intron | 20.0% |
| !!! | TTAAGAACTTCTTTAACTTT+AGG | + | chr3_1:77345948-77345967 | Msa0377010:intron | 20.0% |
| !! | ATAAGATCATATCTTTAACA+TGG | + | chr3_1:77346673-77346692 | Msa0377010:intron | 20.0% |
| !! | GTGTGAATATTTCAAATAAT+CGG | - | chr3_1:77346772-77346791 | Msa0377020:three_prime_UTR | 20.0% |
| !!! | AGTTAATATCGATTTGTAAA+AGG | - | chr3_1:77346848-77346867 | Msa0377020:three_prime_UTR | 20.0% |
| ! | TATCTTATTCTACATACTTC+AGG | - | chr3_1:77344099-77344118 | None:intergenic | 25.0% |
| !! | AAATTTAACGTTCCTTGTTT+AGG | - | chr3_1:77344287-77344306 | None:intergenic | 25.0% |
| ! | TCAGTTACATATCTTAAATG+AGG | - | chr3_1:77344344-77344363 | None:intergenic | 25.0% |
| !!! | TGAATCTTTGAAGTAGTTTT+GGG | - | chr3_1:77344455-77344474 | None:intergenic | 25.0% |
| !!! | ATGAATCTTTGAAGTAGTTT+TGG | - | chr3_1:77344456-77344475 | None:intergenic | 25.0% |
| ! | TTGAAATTGAATGTTCCATT+AGG | + | chr3_1:77344575-77344594 | Msa0377010:intron | 25.0% |
| ! | TAATCTCAAGTAATTTACTG+TGG | - | chr3_1:77344617-77344636 | None:intergenic | 25.0% |
| !!! | GGAAAACCTTTAAAATGTTT+TGG | - | chr3_1:77344823-77344842 | None:intergenic | 25.0% |
| !! | TGATAAAACATCTTTTCCAA+AGG | + | chr3_1:77345016-77345035 | Msa0377010:CDS | 25.0% |
| !! | TGCTATAATCCTTTGAATTT+TGG | + | chr3_1:77345095-77345114 | Msa0377010:intron | 25.0% |
| ! | GTGATAGTACATTAATTACA+AGG | + | chr3_1:77345249-77345268 | Msa0377010:intron | 25.0% |
| ! | ATAGGTTTATACTACAGATT+AGG | + | chr3_1:77345478-77345497 | Msa0377010:intron | 25.0% |
| ! | TACTACAGATTAGGATATTT+AGG | + | chr3_1:77345487-77345506 | Msa0377010:intron | 25.0% |
| ! | TGTTTGACATCCAATATAAA+TGG | - | chr3_1:77345515-77345534 | None:intergenic | 25.0% |
| ! | CAGTCATTAAAGAATCTTTA+TGG | + | chr3_1:77345554-77345573 | Msa0377010:intron | 25.0% |
| ! | ATTAAAGAATCTTTATGGCA+TGG | + | chr3_1:77345559-77345578 | Msa0377010:intron | 25.0% |
| ! | TCAAATGAAGAAGTTTGTAT+TGG | - | chr3_1:77346452-77346471 | Msa0377020:three_prime_UTR | 25.0% |
| ! | TTCTTCATTTGAATGTGTTT+GGG | + | chr3_1:77346460-77346479 | Msa0377010:intron | 25.0% |
| ! | GTTCCATTATGTTATTAACT+CGG | - | chr3_1:77346629-77346648 | Msa0377020:three_prime_UTR | 25.0% |
| GTATCTCAAATATCTTTCCA+TGG | - | chr3_1:77343655-77343674 | None:intergenic | 30.0% | |
| ! | ACAACAATTTTGGATGTTCA+AGG | + | chr3_1:77343756-77343775 | Msa0377010:CDS | 30.0% |
| TTGAAACCCTATAAAGCAAA+GGG | - | chr3_1:77344012-77344031 | None:intergenic | 30.0% | |
| ! | TTTGAAACCCTATAAAGCAA+AGG | - | chr3_1:77344013-77344032 | None:intergenic | 30.0% |
| CAAATGTTTATCATCAATGC+TGG | + | chr3_1:77344383-77344402 | Msa0377010:CDS | 30.0% | |
| !! | TCAACATTTGGTTCTGTTAT+TGG | + | chr3_1:77344652-77344671 | Msa0377010:intron | 30.0% |
| ! | GCAAGACCAAAACATTTTAA+AGG | + | chr3_1:77344814-77344833 | Msa0377010:CDS | 30.0% |
| ATTCATACTACATCTTAACC+TGG | + | chr3_1:77344862-77344881 | Msa0377010:intron | 30.0% | |
| GAAATGAAAAACTGTACCTT+TGG | - | chr3_1:77345035-77345054 | None:intergenic | 30.0% | |
| ACTCAGTAACCAAAATTCAA+AGG | - | chr3_1:77345107-77345126 | None:intergenic | 30.0% | |
| !!! | AACTGTTTTTATACTCGTCT+AGG | + | chr3_1:77345314-77345333 | Msa0377010:intron | 30.0% |
| TCAATAATCTTGTCAACCAT+GGG | - | chr3_1:77345399-77345418 | None:intergenic | 30.0% | |
| ATCAATAATCTTGTCAACCA+TGG | - | chr3_1:77345400-77345419 | None:intergenic | 30.0% | |
| GTTGACAAGATTATTGATGT+TGG | + | chr3_1:77345402-77345421 | Msa0377010:CDS | 30.0% | |
| AAATGCTATTGTTCGAACAA+AGG | - | chr3_1:77345648-77345667 | None:intergenic | 30.0% | |
| ! | AATGAGACAAGAAGAACTTT+TGG | + | chr3_1:77346060-77346079 | Msa0377010:CDS | 30.0% |
| TCAAGGTAAGTCAAAAGTTA+AGG | + | chr3_1:77346113-77346132 | Msa0377010:intron | 30.0% | |
| ATAAAAATTCCCATGACAGA+TGG | - | chr3_1:77346182-77346201 | Msa0377020:intron | 30.0% | |
| CTTCTTCATTTGAATGTGTT+TGG | + | chr3_1:77346459-77346478 | Msa0377010:intron | 30.0% | |
| !! | ACATTATTTTGCTTGACAGA+TGG | + | chr3_1:77346578-77346597 | Msa0377010:intron | 30.0% |
| ! | AGATGGATAATGGTACAAAA+TGG | + | chr3_1:77346595-77346614 | Msa0377010:intron | 30.0% |
| TTCAAATAATCGGCAAGAAT+TGG | - | chr3_1:77346762-77346781 | Msa0377020:three_prime_UTR | 30.0% | |
| !! | TTTGTAAAAGGTACTGCTTA+AGG | - | chr3_1:77346836-77346855 | Msa0377020:three_prime_UTR | 30.0% |
| !!! | TTATTTTGACTCTCAGCTTT+TGG | - | chr3_1:77346966-77346985 | Msa0377020:intron | 30.0% |
| TACTATCCACATGGTTATCA+TGG | + | chr3_1:77343552-77343571 | Msa0377010:CDS | 35.0% | |
| GAAGACCTGTTTATATTGAG+AGG | + | chr3_1:77343589-77343608 | Msa0377010:CDS | 35.0% | |
| ! | TAGGAAAAGTTGATCCCAAT+AGG | + | chr3_1:77343613-77343632 | Msa0377010:CDS | 35.0% |
| GTTACTTGCATAAGCCTATT+GGG | - | chr3_1:77343630-77343649 | None:intergenic | 35.0% | |
| AGTTACTTGCATAAGCCTAT+TGG | - | chr3_1:77343631-77343650 | None:intergenic | 35.0% | |
| ! | ATATTTGAGATACCATGTGC+AGG | + | chr3_1:77343662-77343681 | Msa0377010:intron | 35.0% |
| ! | TATTTGAGATACCATGTGCA+GGG | + | chr3_1:77343663-77343682 | Msa0377010:intron | 35.0% |
| AACATCCAAAATTGTTGTGC+TGG | - | chr3_1:77343754-77343773 | None:intergenic | 35.0% | |
| AGATTGACAGTGAGTATGTA+TGG | + | chr3_1:77343810-77343829 | Msa0377010:intron | 35.0% | |
| GAGTATGTATGGCTTAATCA+TGG | + | chr3_1:77343821-77343840 | Msa0377010:intron | 35.0% | |
| TATGTATGGCTTAATCATGG+CGG | + | chr3_1:77343824-77343843 | Msa0377010:intron | 35.0% | |
| TGGACTAATGGTGAATTTAG+CGG | - | chr3_1:77343892-77343911 | None:intergenic | 35.0% | |
| TCTTCTTCCCTTTGCTTTAT+AGG | + | chr3_1:77344002-77344021 | Msa0377010:intron | 35.0% | |
| CTTCTTCCCTTTGCTTTATA+GGG | + | chr3_1:77344003-77344022 | Msa0377010:intron | 35.0% | |
| TTCCATAGAAGCTTAAAACC+AGG | - | chr3_1:77344410-77344429 | None:intergenic | 35.0% | |
| TGAATGTTCCATTAGGTTCT+TGG | + | chr3_1:77344582-77344601 | Msa0377010:intron | 35.0% | |
| ACTTGTTTCCAAGAACCTAA+TGG | - | chr3_1:77344593-77344612 | None:intergenic | 35.0% | |
| !!! | AAAATGTTTTGGTCTTGCCA+TGG | - | chr3_1:77344812-77344831 | None:intergenic | 35.0% |
| !! | CTACATCTTAACCTGGTTTT+TGG | + | chr3_1:77344869-77344888 | Msa0377010:intron | 35.0% |
| ATCGTAACAATTTCCAACGA+CGG | + | chr3_1:77344978-77344997 | Msa0377010:CDS | 35.0% | |
| !!! | GAATTTTGGTTACTGAGTAC+AGG | + | chr3_1:77345109-77345128 | Msa0377010:intron | 35.0% |
| AAAAGTGGCTATACATCTAC+TGG | + | chr3_1:77345134-77345153 | Msa0377010:CDS | 35.0% | |
| ATAGAATTCCCACATGCTTT+GGG | - | chr3_1:77345194-77345213 | None:intergenic | 35.0% | |
| !! | CTAGGCAAGATTTGTTGATA+AGG | + | chr3_1:77345332-77345351 | Msa0377010:intron | 35.0% |
| !! | GCAAGATTTGTTGATAAGGT+TGG | + | chr3_1:77345336-77345355 | Msa0377010:CDS | 35.0% |
| GGAACATATTCATCATACTC+AGG | - | chr3_1:77345378-77345397 | None:intergenic | 35.0% | |
| GTATGATGAATATGTTCCCA+TGG | + | chr3_1:77345380-77345399 | Msa0377010:CDS | 35.0% | |
| GATTATTGATGTTGGACCAA+AGG | + | chr3_1:77345410-77345429 | Msa0377010:CDS | 35.0% | |
| !! | AAAATCTGCTTTTGGTAACC+AGG | + | chr3_1:77345588-77345607 | Msa0377010:intron | 35.0% |
| TGTTCGAACAAAGGCAAAAA+GGG | - | chr3_1:77345639-77345658 | None:intergenic | 35.0% | |
| TTGTTCGAACAAAGGCAAAA+AGG | - | chr3_1:77345640-77345659 | None:intergenic | 35.0% | |
| AATAGCATTTCGTGTGACAA+AGG | + | chr3_1:77345658-77345677 | Msa0377010:intron | 35.0% | |
| ATAGCATTTCGTGTGACAAA+GGG | + | chr3_1:77345659-77345678 | Msa0377010:intron | 35.0% | |
| TGTGACAAAGGGAGTAAAAA+GGG | + | chr3_1:77345670-77345689 | Msa0377010:CDS | 35.0% | |
| !!! | CATTTTTTTCAAGCTCACTG+AGG | - | chr3_1:77345754-77345773 | None:intergenic | 35.0% |
| AGAAGTTCTTAACAATGACG+TGG | - | chr3_1:77345940-77345959 | None:intergenic | 35.0% | |
| GCATGTTCAATTTCCTAAAC+AGG | + | chr3_1:77346021-77346040 | Msa0377010:intron | 35.0% | |
| ! | TTTTGGCATACATAGACAGT+CGG | + | chr3_1:77346077-77346096 | Msa0377010:CDS | 35.0% |
| TCGGGAAAAAAGCAAATTCA+AGG | + | chr3_1:77346096-77346115 | Msa0377010:CDS | 35.0% | |
| TTAGTACTTACCATCTGTCA+TGG | + | chr3_1:77346169-77346188 | Msa0377010:intron | 35.0% | |
| TAGTACTTACCATCTGTCAT+GGG | + | chr3_1:77346170-77346189 | Msa0377010:intron | 35.0% | |
| TAAAGAGACAGTGTACATGA+CGG | + | chr3_1:77346240-77346259 | Msa0377010:intron | 35.0% | |
| !!! | ACATCCATGCTGTTTTAACT+TGG | + | chr3_1:77346497-77346516 | Msa0377010:intron | 35.0% |
| ATTGCCAAGTTAAAACAGCA+TGG | - | chr3_1:77346504-77346523 | Msa0377020:three_prime_UTR | 35.0% | |
| !!! | ATGCTGTTTTAACTTGGCAA+TGG | + | chr3_1:77346503-77346522 | Msa0377010:intron | 35.0% |
| TTTGCTTGACAGATGGATAA+TGG | + | chr3_1:77346585-77346604 | Msa0377010:intron | 35.0% | |
| TAATGGTACAAAATGGCACA+AGG | + | chr3_1:77346602-77346621 | Msa0377010:intron | 35.0% | |
| GGACCGAGTTAATAACATAA+TGG | + | chr3_1:77346623-77346642 | Msa0377010:intron | 35.0% | |
| GGAACAAACATAATCAGCAA+TGG | + | chr3_1:77346644-77346663 | Msa0377010:intron | 35.0% | |
| AAAGTTGAGAGGTGAGAAAA+AGG | - | chr3_1:77346716-77346735 | Msa0377020:three_prime_UTR | 35.0% | |
| AACCATGTGGATAGTACTTC+TGG | - | chr3_1:77343548-77343567 | None:intergenic | 40.0% | |
| CCTAGCCTCTCAATATAAAC+AGG | - | chr3_1:77343597-77343616 | None:intergenic | 40.0% | |
| CCTGTTTATATTGAGAGGCT+AGG | + | chr3_1:77343594-77343613 | Msa0377010:CDS | 40.0% | |
| GCTTATGCAAGTAACTACCA+TGG | + | chr3_1:77343635-77343654 | Msa0377010:CDS | 40.0% | |
| ! | TTTTCTCAAAACCCTGCACA+TGG | - | chr3_1:77343677-77343696 | None:intergenic | 40.0% |
| ATAGCTGCTAAGAGACACAT+AGG | + | chr3_1:77343726-77343745 | Msa0377010:CDS | 40.0% | |
| ! | AGGTTCCAGCACAACAATTT+TGG | + | chr3_1:77343746-77343765 | Msa0377010:CDS | 40.0% |
| ! | AATTTTGGATGTTCAAGGCG+TGG | + | chr3_1:77343761-77343780 | Msa0377010:CDS | 40.0% |
| AGTGCATGACTTTGGACTAA+TGG | - | chr3_1:77343904-77343923 | None:intergenic | 40.0% | |
| GTCCAAAGTCATGCACTAAA+TGG | + | chr3_1:77343907-77343926 | Msa0377010:intron | 40.0% | |
| AGCCATTTAGTGCATGACTT+TGG | - | chr3_1:77343912-77343931 | None:intergenic | 40.0% | |
| TTGAGAAGCTCACCTAAACA+AGG | + | chr3_1:77344272-77344291 | Msa0377010:intron | 40.0% | |
| TTTATCATCAATGCTGGTCC+TGG | + | chr3_1:77344389-77344408 | Msa0377010:CDS | 40.0% | |
| !!! | GTCCTGGTTTTAAGCTTCTA+TGG | + | chr3_1:77344405-77344424 | Msa0377010:CDS | 40.0% |
| CATAAGGGTTCTTACCTCAA+TGG | - | chr3_1:77344532-77344551 | None:intergenic | 40.0% | |
| TACTTGAGATTATCGATGCG+AGG | + | chr3_1:77344625-77344644 | Msa0377010:CDS | 40.0% | |
| ATGCGAGGTAACTCAACATT+TGG | + | chr3_1:77344640-77344659 | Msa0377010:intron | 40.0% | |
| AGTGAGCTACCAGAATTTCT+AGG | + | chr3_1:77344734-77344753 | Msa0377010:intron | 40.0% | |
| GCTGTATGACATCCGATAAA+GGG | + | chr3_1:77344786-77344805 | Msa0377010:CDS | 40.0% | |
| GCAAAGTAGAACCAAAAACC+AGG | - | chr3_1:77344883-77344902 | None:intergenic | 40.0% | |
| AATAGTTGTCTGCATGCAGA+TGG | + | chr3_1:77344923-77344942 | Msa0377010:intron | 40.0% | |
| TCGTAACAATTTCCAACGAC+GGG | + | chr3_1:77344979-77344998 | Msa0377010:CDS | 40.0% | |
| TACTGAGTACAGGCAAAAAG+TGG | + | chr3_1:77345119-77345138 | Msa0377010:intron | 40.0% | |
| CATAGAATTCCCACATGCTT+TGG | - | chr3_1:77345195-77345214 | None:intergenic | 40.0% | |
| CTTGGACATGAGTCAGTATA+GGG | - | chr3_1:77345220-77345239 | None:intergenic | 40.0% | |
| TCTTGGACATGAGTCAGTAT+AGG | - | chr3_1:77345221-77345240 | None:intergenic | 40.0% | |
| TACTATCACTTGCCTCTTCT+TGG | - | chr3_1:77345238-77345257 | None:intergenic | 40.0% | |
| ! | GTTGATAAGGTTGGTCATAC+CGG | + | chr3_1:77345345-77345364 | Msa0377010:CDS | 40.0% |
| ATCATACTCAGGAAAACCAC+CGG | - | chr3_1:77345367-77345386 | None:intergenic | 40.0% | |
| TTTGAGCCAAATGAGTTTCG+TGG | - | chr3_1:77345450-77345469 | None:intergenic | 40.0% | |
| ! | CGAAACTCATTTGGCTCAAA+AGG | + | chr3_1:77345450-77345469 | Msa0377010:CDS | 40.0% |
| TTGGCTCAAAAGGTGAGAAT+AGG | + | chr3_1:77345460-77345479 | Msa0377010:intron | 40.0% | |
| ! | GGATGCAGAAAATCTGCTTT+TGG | + | chr3_1:77345580-77345599 | Msa0377010:intron | 40.0% |
| GTGTGACAAAGGGAGTAAAA+AGG | + | chr3_1:77345669-77345688 | Msa0377010:CDS | 40.0% | |
| TTCAAGGTAGAAGATGAGGA+GGG | - | chr3_1:77345728-77345747 | None:intergenic | 40.0% | |
| TTTCAAGGTAGAAGATGAGG+AGG | - | chr3_1:77345729-77345748 | None:intergenic | 40.0% | |
| AGTTTATCGTGTGGATGCAT+TGG | + | chr3_1:77345838-77345857 | Msa0377010:CDS | 40.0% | |
| AGAGCTCATTGCTACAAAGA+AGG | + | chr3_1:77345865-77345884 | Msa0377010:CDS | 40.0% | |
| TTTGGCATACATAGACAGTC+GGG | + | chr3_1:77346078-77346097 | Msa0377010:CDS | 40.0% | |
| ! | TCACCTCTCAACTTTTCCTT+AGG | + | chr3_1:77346721-77346740 | Msa0377010:CDS | 40.0% |
| ACTCCTAAGGAAAAGTTGAG+AGG | - | chr3_1:77346727-77346746 | Msa0377020:three_prime_UTR | 40.0% | |
| GCAAGAATTGGTTGACTAGA+GGG | - | chr3_1:77346750-77346769 | Msa0377020:three_prime_UTR | 40.0% | |
| TGGTGAAACTGACATGATGA+GGG | - | chr3_1:77346803-77346822 | Msa0377020:three_prime_UTR | 40.0% | |
| TTGGTGAAACTGACATGATG+AGG | - | chr3_1:77346804-77346823 | Msa0377020:three_prime_UTR | 40.0% | |
| ! | TACAGAAGCATGTCAGTGTA+AGG | + | chr3_1:77347001-77347020 | Msa0377010:CDS | 40.0% |
| !! | GTCCAGAAGTACTATCCACA+TGG | + | chr3_1:77343543-77343562 | Msa0377010:CDS | 45.0% |
| TCCACATGGTTATCATGGTG+TGG | + | chr3_1:77343557-77343576 | Msa0377010:CDS | 45.0% | |
| TCCACACCATGATAACCATG+TGG | - | chr3_1:77343561-77343580 | None:intergenic | 45.0% | |
| TGGTTATCATGGTGTGGACA+AGG | + | chr3_1:77343563-77343582 | Msa0377010:CDS | 45.0% | |
| TTATCATGGTGTGGACAAGG+AGG | + | chr3_1:77343566-77343585 | Msa0377010:CDS | 45.0% | |
| TATCATGGTGTGGACAAGGA+GGG | + | chr3_1:77343567-77343586 | Msa0377010:CDS | 45.0% | |
| TTAGCAGCTATAGAGCAAGC+TGG | - | chr3_1:77343717-77343736 | None:intergenic | 45.0% | |
| GCTCACTGAGAACTTATAGC+TGG | - | chr3_1:77344721-77344740 | None:intergenic | 45.0% | |
| ! | GAGCTACCAGAATTTCTAGG+CGG | + | chr3_1:77344737-77344756 | Msa0377010:CDS | 45.0% |
| CAACTACCGCCTAGAAATTC+TGG | - | chr3_1:77344746-77344765 | None:intergenic | 45.0% | |
| TGCACCTGTGTAGATCATGA+TGG | + | chr3_1:77344764-77344783 | Msa0377010:CDS | 45.0% | |
| ACAGCCATCATGATCTACAC+AGG | - | chr3_1:77344771-77344790 | None:intergenic | 45.0% | |
| GGCTGTATGACATCCGATAA+AGG | + | chr3_1:77344785-77344804 | Msa0377010:CDS | 45.0% | |
| TGCATGCAGATGGTTCTTAG+TGG | + | chr3_1:77344933-77344952 | Msa0377010:intron | 45.0% | |
| CGTAACAATTTCCAACGACG+GGG | + | chr3_1:77344980-77344999 | Msa0377010:CDS | 45.0% | |
| GTAACAATTTCCAACGACGG+GGG | + | chr3_1:77344981-77345000 | Msa0377010:CDS | 45.0% | |
| TAACAATTTCCAACGACGGG+GGG | + | chr3_1:77344982-77345001 | Msa0377010:CDS | 45.0% | |
| ! | ACTGACTCATGTCCAAGAAG+AGG | + | chr3_1:77345223-77345242 | Msa0377010:intron | 45.0% |
| GTAACCAGGACTGTTACAGT+GGG | + | chr3_1:77345602-77345621 | Msa0377010:intron | 45.0% | |
| GACAAAGGGAGTAAAAAGGG+AGG | + | chr3_1:77345673-77345692 | Msa0377010:CDS | 45.0% | |
| TCAAGGTAGAAGATGAGGAG+GGG | - | chr3_1:77345727-77345746 | None:intergenic | 45.0% | |
| GCGTTTCAAGGTAGAAGATG+AGG | - | chr3_1:77345732-77345751 | None:intergenic | 45.0% | |
| GAATGCTGCAGTTTATCGTG+TGG | + | chr3_1:77345829-77345848 | Msa0377010:CDS | 45.0% | |
| ! | TCCTAAACAGGCTTTGTACG+AGG | + | chr3_1:77346033-77346052 | Msa0377010:intron | 45.0% |
| TGTCTGTAAAGCAGTGTTGC+TGG | + | chr3_1:77346217-77346236 | Msa0377010:intron | 45.0% | |
| ! | GTGTACATGACGGAGTTGTT+TGG | + | chr3_1:77346250-77346269 | Msa0377010:intron | 45.0% |
| ! | TACATGACGGAGTTGTTTGG+TGG | + | chr3_1:77346253-77346272 | Msa0377010:intron | 45.0% |
| TCTCTCTCTCTCTTTGCACT+GGG | + | chr3_1:77346351-77346370 | Msa0377010:intron | 45.0% | |
| GGCAAGAATTGGTTGACTAG+AGG | - | chr3_1:77346751-77346770 | Msa0377020:three_prime_UTR | 45.0% | |
| CTGCTTAAGGTGACAGTGAT+TGG | - | chr3_1:77346823-77346842 | Msa0377020:three_prime_UTR | 45.0% | |
| AAACTGCGCTGTTCAAGATG+CGG | - | chr3_1:77346885-77346904 | Msa0377020:three_prime_UTR | 45.0% | |
| !! | TTGACTCTCAGCTTTTGGCT+GGG | - | chr3_1:77346961-77346980 | Msa0377020:intron | 45.0% |
| ! | TTTGACTCTCAGCTTTTGGC+TGG | - | chr3_1:77346962-77346981 | Msa0377020:intron | 45.0% |
| GATGAGTTCTCGAGCAGACT+TGG | - | chr3_1:77344043-77344062 | None:intergenic | 50.0% | |
| TGACATCCGATAAAGGGCCA+TGG | + | chr3_1:77344792-77344811 | Msa0377010:CDS | 50.0% | |
| GTCTTGCCATGGCCCTTTAT+CGG | - | chr3_1:77344801-77344820 | None:intergenic | 50.0% | |
| AACAATTTCCAACGACGGGG+GGG | + | chr3_1:77344983-77345002 | Msa0377010:CDS | 50.0% | |
| ATCACCTCTCCCAAAGCATG+TGG | + | chr3_1:77345182-77345201 | Msa0377010:CDS | 50.0% | |
| TCACCTCTCCCAAAGCATGT+GGG | + | chr3_1:77345183-77345202 | Msa0377010:CDS | 50.0% | |
| !! | ATTCCCACATGCTTTGGGAG+AGG | - | chr3_1:77345189-77345208 | None:intergenic | 50.0% |
| ! | GATAAGGTTGGTCATACCGG+TGG | + | chr3_1:77345348-77345367 | Msa0377010:CDS | 50.0% |
| GCAGCACCACGAAACTCATT+TGG | + | chr3_1:77345441-77345460 | Msa0377010:CDS | 50.0% | |
| GGTAACCAGGACTGTTACAG+TGG | + | chr3_1:77345601-77345620 | Msa0377010:intron | 50.0% | |
| !! | GGGGTTTGGCTTTGTGAATC+TGG | - | chr3_1:77345708-77345727 | None:intergenic | 50.0% |
| GTAGAAGATGAGGAGGGGTT+TGG | - | chr3_1:77345722-77345741 | None:intergenic | 50.0% | |
| ! | AAGCTCACTGAGGCGTTTCA+AGG | - | chr3_1:77345744-77345763 | None:intergenic | 50.0% |
| TGCCATGCCAAGTGAGAAAG+AGG | + | chr3_1:77345799-77345818 | Msa0377010:CDS | 50.0% | |
| CTCCTCTTTCTCACTTGGCA+TGG | - | chr3_1:77345804-77345823 | None:intergenic | 50.0% | |
| AGCAGCTCCTCTTTCTCACT+TGG | - | chr3_1:77345809-77345828 | None:intergenic | 50.0% | |
| GCCTCGTACAAAGCCTGTTT+AGG | - | chr3_1:77346037-77346056 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTTTGCAC+TGG | + | chr3_1:77346350-77346369 | Msa0377010:intron | 50.0% | |
| GTTGACTAGAGGGACTCCTA+AGG | - | chr3_1:77346740-77346759 | Msa0377020:three_prime_UTR | 50.0% | |
| CTGTTCAAGATGCGGGCAAA+AGG | - | chr3_1:77346877-77346896 | Msa0377020:three_prime_UTR | 50.0% | |
| AACTGCGCTGTTCAAGATGC+GGG | - | chr3_1:77346884-77346903 | Msa0377020:three_prime_UTR | 50.0% | |
| !! | GGTGCTGCTTGCTTCTCCTT+TGG | - | chr3_1:77345429-77345448 | None:intergenic | 55.0% |
| GATGCCCACTGTAACAGTCC+TGG | - | chr3_1:77345609-77345628 | None:intergenic | 55.0% | |
| ! | CAGCGCAGTTTTGCTGACGT+CGG | + | chr3_1:77346894-77346913 | Msa0377010:CDS | 55.0% |
| TTCAATCACCCCCCCGTCGT+TGG | - | chr3_1:77344994-77345013 | None:intergenic | 60.0% | |
| CTTTGCACTGGGCGTGTGTG+TGG | + | chr3_1:77346362-77346381 | Msa0377010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 77343516 | 77347052 | 77343516 | ID=Msa0377010;Name=Msa0377010 |
| chr3_1 | mRNA | 77343516 | 77347052 | 77343516 | ID=Msa0377010-mRNA-1;Parent=Msa0377010;Name=Msa0377010-mRNA-1;_AED=0.23;_eAED=0.25;_QI=0|0.63|0.58|1|0.81|0.83|12|0|523 |
| chr3_1 | exon | 77343516 | 77343677 | 77343516 | ID=Msa0377010-mRNA-1:exon:18480;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77343684 | 77343782 | 77343684 | ID=Msa0377010-mRNA-1:exon:18481;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77344024 | 77344101 | 77344024 | ID=Msa0377010-mRNA-1:exon:18482;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77344374 | 77344475 | 77344374 | ID=Msa0377010-mRNA-1:exon:18483;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77344597 | 77344646 | 77344597 | ID=Msa0377010-mRNA-1:exon:18484;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77344736 | 77344835 | 77344736 | ID=Msa0377010-mRNA-1:exon:18485;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77344942 | 77345037 | 77344942 | ID=Msa0377010-mRNA-1:exon:18486;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77345131 | 77345232 | 77345131 | ID=Msa0377010-mRNA-1:exon:18487;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77345336 | 77345471 | 77345336 | ID=Msa0377010-mRNA-1:exon:18488;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77345663 | 77345886 | 77345663 | ID=Msa0377010-mRNA-1:exon:18489;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77346043 | 77346117 | 77346043 | ID=Msa0377010-mRNA-1:exon:18490;Parent=Msa0377010-mRNA-1 |
| chr3_1 | exon | 77346705 | 77347052 | 77346705 | ID=Msa0377010-mRNA-1:exon:18491;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77343516 | 77343677 | 77343516 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77343684 | 77343782 | 77343684 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77344024 | 77344101 | 77344024 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77344374 | 77344475 | 77344374 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77344597 | 77344646 | 77344597 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77344736 | 77344835 | 77344736 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77344942 | 77345037 | 77344942 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77345131 | 77345232 | 77345131 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77345336 | 77345471 | 77345336 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77345663 | 77345886 | 77345663 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77346043 | 77346117 | 77346043 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| chr3_1 | CDS | 77346705 | 77347052 | 77346705 | ID=Msa0377010-mRNA-1:cds;Parent=Msa0377010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
