Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494750 | XP_003599150.1 | 98.113 | 265 | 5 | 0 | 1 | 265 | 276 | 540 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494750 | sp|Q9SFB0|DTX43_ARATH | 70.229 | 262 | 78 | 0 | 1 | 262 | 259 | 520 | 8.90e-129 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494750 | G7IZF7 | 98.113 | 265 | 5 | 0 | 1 | 265 | 276 | 540 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056910 | Msa0494750 | 0.800814 | 1.207872e-48 | -8.615850e-47 |
| Msa0400060 | Msa0494750 | 0.948720 | 5.385473e-107 | -8.615850e-47 |
| Msa0443820 | Msa0494750 | 0.852517 | 4.381928e-61 | -8.615850e-47 |
| Msa0480430 | Msa0494750 | -0.803255 | 3.803558e-49 | -8.615850e-47 |
| Msa0353040 | Msa0494750 | 0.897970 | 8.381345e-77 | -8.615850e-47 |
| Msa0494750 | Msa0514650 | 0.801404 | 9.150420e-49 | -8.615850e-47 |
| Msa0494750 | Msa0524960 | -0.810094 | 1.367359e-50 | -8.615850e-47 |
| Msa0494750 | Msa0644630 | -0.804043 | 2.610057e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494750 | MtrunA17_Chr3g0088471 | 98.113 | 265 | 5 | 0 | 1 | 265 | 276 | 540 | 0.0 | 528 |
| Msa0494750 | MtrunA17_Chr8g0352171 | 77.652 | 264 | 59 | 0 | 1 | 264 | 128 | 391 | 8.41e-153 | 431 |
| Msa0494750 | MtrunA17_Chr8g0352151 | 76.628 | 261 | 61 | 0 | 1 | 261 | 292 | 552 | 1.56e-143 | 414 |
| Msa0494750 | MtrunA17_Chr2g0328761 | 65.000 | 260 | 91 | 0 | 1 | 260 | 247 | 506 | 4.05e-116 | 342 |
| Msa0494750 | MtrunA17_Chr7g0243421 | 44.906 | 265 | 134 | 4 | 1 | 259 | 12 | 270 | 9.66e-70 | 216 |
| Msa0494750 | MtrunA17_Chr5g0448591 | 43.798 | 258 | 145 | 0 | 3 | 260 | 292 | 549 | 2.74e-69 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494750 | AT3G08040.2 | 70.229 | 262 | 78 | 0 | 1 | 262 | 155 | 416 | 5.89e-131 | 377 |
| Msa0494750 | AT3G08040.1 | 70.229 | 262 | 78 | 0 | 1 | 262 | 259 | 520 | 9.05e-130 | 378 |
| Msa0494750 | AT1G51340.1 | 63.077 | 260 | 96 | 0 | 1 | 260 | 249 | 508 | 2.56e-112 | 333 |
| Msa0494750 | AT1G51340.3 | 63.077 | 260 | 96 | 0 | 1 | 260 | 255 | 514 | 3.92e-112 | 332 |
| Msa0494750 | AT1G51340.5 | 63.077 | 260 | 96 | 0 | 1 | 260 | 255 | 514 | 3.92e-112 | 332 |
| Msa0494750 | AT1G51340.2 | 63.077 | 260 | 96 | 0 | 1 | 260 | 255 | 514 | 3.92e-112 | 332 |
| Msa0494750 | AT4G38380.4 | 44.487 | 263 | 140 | 3 | 3 | 263 | 186 | 444 | 2.61e-68 | 218 |
| Msa0494750 | AT4G38380.3 | 44.487 | 263 | 140 | 3 | 3 | 263 | 224 | 482 | 8.34e-68 | 218 |
| Msa0494750 | AT4G38380.5 | 44.487 | 263 | 140 | 3 | 3 | 263 | 286 | 544 | 3.76e-67 | 218 |
| Msa0494750 | AT4G38380.2 | 44.487 | 263 | 140 | 3 | 3 | 263 | 296 | 554 | 6.03e-67 | 217 |
| Msa0494750 | AT4G38380.1 | 44.487 | 263 | 140 | 3 | 3 | 263 | 296 | 554 | 6.03e-67 | 217 |
| Msa0494750 | AT2G38330.1 | 41.379 | 261 | 149 | 2 | 1 | 259 | 255 | 513 | 8.78e-60 | 197 |
| Msa0494750 | AT1G51340.4 | 63.235 | 136 | 50 | 0 | 1 | 136 | 255 | 390 | 6.07e-50 | 169 |
Find 75 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTCAGTGTTGTCAAAT+AGG | 0.247790 | 3_4:-23108337 | None:intergenic |
| TCATTAGCCTTTGTCTTTGA+TGG | 0.249674 | 3_4:+23107123 | Msa0494750:CDS |
| GTCTTTGATGGTGTGAACTA+TGG | 0.289153 | 3_4:+23107135 | Msa0494750:CDS |
| TGGAATGCAGCCATTGGAAT+TGG | 0.328091 | 3_4:-23106610 | None:intergenic |
| TCCAAACCTGCCTCCAGGTT+TGG | 0.334784 | 3_4:+23106629 | Msa0494750:CDS |
| TCCAAACCTGGAGGCAGGTT+TGG | 0.341311 | 3_4:-23106630 | None:intergenic |
| ATGAGTCTTCGCATGTTTGC+TGG | 0.360088 | 3_4:+23107383 | Msa0494750:CDS |
| ACAACACTAGGACGTATAAA+TGG | 0.362648 | 3_4:-23108160 | None:intergenic |
| ATACTCAGTGTTGTCAAATA+GGG | 0.365604 | 3_4:-23108336 | None:intergenic |
| ATTGACAACATGGACGATAC+TGG | 0.379609 | 3_4:-23108185 | None:intergenic |
| TGGTTTAGCTGTTGCAATAC+AGG | 0.386667 | 3_4:+23106675 | Msa0494750:CDS |
| TACAAAGTGTTGTTAAATAG+TGG | 0.396724 | 3_4:-23108238 | None:intergenic |
| CGCTTATTCTGCATACTCCT+TGG | 0.398929 | 3_4:+23107170 | Msa0494750:CDS |
| GTAGAAGAATCAGGTCTAAT+CGG | 0.404981 | 3_4:-23108286 | None:intergenic |
| TTCGCATGTTTGCTGGTGTA+TGG | 0.406622 | 3_4:+23107390 | Msa0494750:CDS |
| TGCAGGATGGGAACAGGAAC+AGG | 0.408714 | 3_4:+23107965 | Msa0494750:intron |
| ACAAAGGCTAATGAATTGAT+TGG | 0.419858 | 3_4:-23107114 | None:intergenic |
| TGCTGCTAATGAGGCTGATA+AGG | 0.420820 | 3_4:-23106578 | None:intergenic |
| TGCATATGCAGGATGGGAAC+AGG | 0.431882 | 3_4:+23107959 | Msa0494750:intron |
| TGCATTCCAAACCTGCCTCC+AGG | 0.432229 | 3_4:+23106624 | Msa0494750:CDS |
| CCGGGAGGCCTAGTCTGATT+AGG | 0.440861 | 3_4:-23106954 | None:intergenic |
| ATCTGCAAATCCTTCATGCT+TGG | 0.446669 | 3_4:-23106229 | None:intergenic |
| ATCAATAGGTGGTCTATTGT+TGG | 0.453559 | 3_4:+23106525 | Msa0494750:intron |
| ACATCCTCCCTTCTCGCTGA+TGG | 0.463184 | 3_4:+23106655 | Msa0494750:CDS |
| GTTGGAGGTGGATTATACTT+TGG | 0.465967 | 3_4:+23106895 | Msa0494750:CDS |
| CTCTCTCTAGTAGTTGGAGG+TGG | 0.470542 | 3_4:+23106883 | Msa0494750:CDS |
| CTGAGAGAGCACATGTGAAA+TGG | 0.475794 | 3_4:-23106063 | None:intergenic |
| TGCCATAGCGTAGAAGAATC+AGG | 0.477013 | 3_4:-23108295 | None:intergenic |
| CAGGTTTGGAATGCAGCCAT+TGG | 0.477643 | 3_4:-23106616 | None:intergenic |
| GTGGCCTCTGAGAAAACGCC+AGG | 0.490069 | 3_4:-23107990 | None:intergenic |
| ATTATAGTCTTTCTCAGCAA+AGG | 0.493012 | 3_4:-23106803 | None:intergenic |
| GCCTCATTAGCAGCAAGGTT+AGG | 0.495494 | 3_4:+23106586 | Msa0494750:CDS |
| GTTGGACTCTCTCTAGTAGT+TGG | 0.497300 | 3_4:+23106877 | Msa0494750:CDS |
| TGCAAATCCTTCATGCTTGG+AGG | 0.500933 | 3_4:-23106226 | None:intergenic |
| TAGAAGAATCAGGTCTAATC+GGG | 0.506914 | 3_4:-23108285 | None:intergenic |
| AAGATTATTCTTCAAGCTGT+CGG | 0.508803 | 3_4:+23108421 | Msa0494750:three_prime_UTR |
| GGACTCTCTCTAGTAGTTGG+AGG | 0.514348 | 3_4:+23106880 | Msa0494750:CDS |
| GACCTGATTCTTCTACGCTA+TGG | 0.515432 | 3_4:+23108293 | Msa0494750:three_prime_UTR |
| TGGGAACAGGAACAGGACCC+TGG | 0.518247 | 3_4:+23107972 | Msa0494750:CDS |
| GAATGTCACTGCTATAACTC+TGG | 0.518341 | 3_4:-23106548 | None:intergenic |
| TACTTCAAATTAGGCATCAG+AGG | 0.520511 | 3_4:+23106035 | Msa0494750:CDS |
| CATGCGAAGACTCATATAGA+TGG | 0.522469 | 3_4:-23107375 | None:intergenic |
| AAACAGACAATTGATCCTAA+AGG | 0.524234 | 3_4:-23108088 | None:intergenic |
| ACCTAACCTTGCTGCTAATG+AGG | 0.528818 | 3_4:-23106587 | None:intergenic |
| TGTCATCCAAACCTGGAGGC+AGG | 0.529510 | 3_4:-23106635 | None:intergenic |
| AGCTAAACCATCAGCGAGAA+GGG | 0.535184 | 3_4:-23106662 | None:intergenic |
| TTGAAGTAAAATATGAGTAG+TGG | 0.539372 | 3_4:-23106020 | None:intergenic |
| CCTAATCAGACTAGGCCTCC+CGG | 0.542740 | 3_4:+23106954 | Msa0494750:CDS |
| CTCTACTATAGTGATAGTCT+TGG | 0.544036 | 3_4:+23108131 | Msa0494750:three_prime_UTR |
| ATCGTCCATGTTGTCAATTG+TGG | 0.546443 | 3_4:+23108190 | Msa0494750:three_prime_UTR |
| GGTGGATTATACTTTGGAGC+CGG | 0.547954 | 3_4:+23106901 | Msa0494750:CDS |
| GGGAGGATGTCATCCAAACC+TGG | 0.556732 | 3_4:-23106642 | None:intergenic |
| CAGCTAAACCATCAGCGAGA+AGG | 0.563189 | 3_4:-23106663 | None:intergenic |
| GTATGCATTGAATGTCGCTA+TGG | 0.582469 | 3_4:+23105995 | Msa0494750:exon |
| CACATTAATGATACATCAAG+AGG | 0.584041 | 3_4:-23108382 | None:intergenic |
| TCTCCTACCTCCAAGCATGA+AGG | 0.588618 | 3_4:+23106219 | Msa0494750:CDS |
| AATCCTTCATGCTTGGAGGT+AGG | 0.609737 | 3_4:-23106222 | None:intergenic |
| AGCGACATTCAATGCATACC+CGG | 0.610601 | 3_4:-23105991 | None:intergenic |
| AAGGTTAGGTCCAATTCCAA+TGG | 0.613997 | 3_4:+23106600 | Msa0494750:CDS |
| TACTCAGTGTTGTCAAATAG+GGG | 0.614519 | 3_4:-23108335 | None:intergenic |
| GCATTCCACAATTGACAACA+TGG | 0.624700 | 3_4:-23108195 | None:intergenic |
| TATATCCTCAAGACAATGTG+TGG | 0.625885 | 3_4:-23108009 | None:intergenic |
| TATCAGCCTCATTAGCAGCA+AGG | 0.628449 | 3_4:+23106581 | Msa0494750:CDS |
| ACGATACTGGATACAACACT+AGG | 0.633960 | 3_4:-23108172 | None:intergenic |
| AGAGGCCACACATTGTCTTG+AGG | 0.643794 | 3_4:+23108004 | Msa0494750:CDS |
| GTTATTCACCTAATCAGACT+AGG | 0.646571 | 3_4:+23106946 | Msa0494750:CDS |
| GTTCACACCATCAAAGACAA+AGG | 0.648235 | 3_4:-23107130 | None:intergenic |
| GCATGTTTGCTGGTGTATGG+AGG | 0.655745 | 3_4:+23107393 | Msa0494750:CDS |
| AAGTAACTACTGCTGCAACA+AGG | 0.664120 | 3_4:+23106827 | Msa0494750:CDS |
| ACATTAATGATACATCAAGA+GGG | 0.676174 | 3_4:-23108381 | None:intergenic |
| TAAACCATCAGCGAGAAGGG+AGG | 0.687372 | 3_4:-23106659 | None:intergenic |
| TGGCCTCTGAGAAAACGCCA+GGG | 0.688941 | 3_4:-23107989 | None:intergenic |
| TTGTACTAAATAGTGTATCG+CGG | 0.701950 | 3_4:+23108256 | Msa0494750:three_prime_UTR |
| ATGTTGTCAATTGTGGAATG+CGG | 0.717692 | 3_4:+23108197 | Msa0494750:three_prime_UTR |
| AGGATGTCATCCAAACCTGG+AGG | 0.737038 | 3_4:-23106639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAACAAAATATAAAAAA+CGG | - | chr3_4:23107231-23107250 | None:intergenic | 10.0% |
| !! | AATGTTTGAACATTATTATT+GGG | - | chr3_4:23106109-23106128 | None:intergenic | 15.0% |
| !! | AAATGTTTGAACATTATTAT+TGG | - | chr3_4:23106110-23106129 | None:intergenic | 15.0% |
| !! | GTTTATATTAATGAAAAAAG+TGG | + | chr3_4:23106195-23106214 | Msa0494750:CDS | 15.0% |
| !! | TAAATTCTAGCATTATTAAT+AGG | - | chr3_4:23106476-23106495 | None:intergenic | 15.0% |
| !!! | CTCATATTTTACTTCAAATT+AGG | + | chr3_4:23106026-23106045 | Msa0494750:CDS | 20.0% |
| !!! | TACAAAATGATGATACTTTT+AGG | + | chr3_4:23106149-23106168 | Msa0494750:intron | 20.0% |
| !!! | ATTTTCAGGTTTCTTAAAAA+TGG | + | chr3_4:23106250-23106269 | Msa0494750:CDS | 20.0% |
| !!! | TAATATTTTTTTCTGAGTCT+CGG | - | chr3_4:23106427-23106446 | None:intergenic | 20.0% |
| !! | TTGTTTCAATTTCAATCAAT+AGG | + | chr3_4:23106511-23106530 | Msa0494750:intron | 20.0% |
| !! | TTAATATATATCTTGCATCT+CGG | - | chr3_4:23106725-23106744 | None:intergenic | 20.0% |
| !! | TCAACATTTATTTAGTGATT+TGG | + | chr3_4:23107254-23107273 | Msa0494750:intron | 20.0% |
| !! | AAACATGTATAAGATGTTTA+TGG | + | chr3_4:23107873-23107892 | Msa0494750:intron | 20.0% |
| ! | TTGAAGTAAAATATGAGTAG+TGG | - | chr3_4:23106023-23106042 | None:intergenic | 25.0% |
| !!! | TGATACTTTTAGGTACATTA+TGG | + | chr3_4:23106159-23106178 | Msa0494750:intron | 25.0% |
| ! | GTTTCTTAAAAATGGTATGT+TGG | + | chr3_4:23106258-23106277 | Msa0494750:intron | 25.0% |
| !!! | AATATTTTTTTCTGAGTCTC+GGG | - | chr3_4:23106426-23106445 | None:intergenic | 25.0% |
| ! | TTTCAATTTCAATCAATAGG+TGG | + | chr3_4:23106514-23106533 | Msa0494750:intron | 25.0% |
| !!! | AACATTTTTGGAAAATACTC+CGG | - | chr3_4:23106923-23106942 | None:intergenic | 25.0% |
| !!! | ATTTGGTATTCTGTTTTTTC+AGG | + | chr3_4:23107271-23107290 | Msa0494750:intron | 25.0% |
| !!! | ATTTTTTCTCTACAAGAGTA+AGG | + | chr3_4:23107325-23107344 | Msa0494750:CDS | 25.0% |
| !!! | TTTTTTCTCTACAAGAGTAA+GGG | + | chr3_4:23107326-23107345 | Msa0494750:CDS | 25.0% |
| ! | AGTTACTTGCTTTCAATATA+AGG | - | chr3_4:23107427-23107446 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAACTATCA+TGG | - | chr3_4:23107511-23107530 | None:intergenic | 25.0% |
| !!! | TCAAGTTTTTTAACCTAACA+TGG | + | chr3_4:23107637-23107656 | Msa0494750:intron | 25.0% |
| !! | TTCGTTGTTCAATTTTCATA+TGG | - | chr3_4:23107840-23107859 | None:intergenic | 25.0% |
| !!! | TACAAAGTGTTGTTAAATAG+TGG | - | chr3_4:23108241-23108260 | None:intergenic | 25.0% |
| ! | ACATTAATGATACATCAAGA+GGG | - | chr3_4:23108384-23108403 | None:intergenic | 25.0% |
| !! | ACTGTCCGATTTTAATCATA+CGG | + | chr3_4:23106351-23106370 | Msa0494750:intron | 30.0% |
| CTAGACCGTATGATTAAAAT+CGG | - | chr3_4:23106359-23106378 | None:intergenic | 30.0% | |
| ! | TTTTAATCATACGGTCTAGA+TGG | + | chr3_4:23106360-23106379 | Msa0494750:intron | 30.0% |
| TTTAATCATACGGTCTAGAT+GGG | + | chr3_4:23106361-23106380 | Msa0494750:intron | 30.0% | |
| ATTAAGTTTGCCTTTATCAC+AGG | + | chr3_4:23106765-23106784 | Msa0494750:intron | 30.0% | |
| ATTATAGTCTTTCTCAGCAA+AGG | - | chr3_4:23106806-23106825 | None:intergenic | 30.0% | |
| !!! | CTGCAAATGAGTTTTGTTTT+AGG | + | chr3_4:23106853-23106872 | Msa0494750:CDS | 30.0% |
| !!! | ATGAGTTTTGTTTTAGGAGT+TGG | + | chr3_4:23106859-23106878 | Msa0494750:CDS | 30.0% |
| ! | GTGAATAACAGCAACATTTT+TGG | - | chr3_4:23106935-23106954 | None:intergenic | 30.0% |
| ACAAAGGCTAATGAATTGAT+TGG | - | chr3_4:23107117-23107136 | None:intergenic | 30.0% | |
| AAAAGAATGCAAACTTACCA+AGG | - | chr3_4:23107190-23107209 | None:intergenic | 30.0% | |
| !!! | TATTCTGTTTTTTCAGGTCT+TGG | + | chr3_4:23107277-23107296 | Msa0494750:intron | 30.0% |
| !! | TACAAGAGTAAGGGTTTTAT+TGG | + | chr3_4:23107335-23107354 | Msa0494750:CDS | 30.0% |
| TAAACTATCATGGAGAGTTT+AGG | - | chr3_4:23107501-23107520 | None:intergenic | 30.0% | |
| ! | TAGTGTAGTTTTTGCATCTA+AGG | + | chr3_4:23107696-23107715 | Msa0494750:intron | 30.0% |
| ! | CTAAGGTAGGTGTATATTTT+TGG | + | chr3_4:23107713-23107732 | Msa0494750:intron | 30.0% |
| ATATGAATGATTGATCATCG+TGG | + | chr3_4:23107743-23107762 | Msa0494750:intron | 30.0% | |
| !! | TACATCACTTTTCATCCTTT+AGG | + | chr3_4:23108073-23108092 | Msa0494750:three_prime_UTR | 30.0% |
| AAACAGACAATTGATCCTAA+AGG | - | chr3_4:23108091-23108110 | None:intergenic | 30.0% | |
| !!! | GGATCAATTGTCTGTTTTTT+AGG | + | chr3_4:23108094-23108113 | Msa0494750:three_prime_UTR | 30.0% |
| TTGTACTAAATAGTGTATCG+CGG | + | chr3_4:23108256-23108275 | Msa0494750:three_prime_UTR | 30.0% | |
| ATACTCAGTGTTGTCAAATA+GGG | - | chr3_4:23108339-23108358 | None:intergenic | 30.0% | |
| CACATTAATGATACATCAAG+AGG | - | chr3_4:23108385-23108404 | None:intergenic | 30.0% | |
| AAGATTATTCTTCAAGCTGT+CGG | + | chr3_4:23108421-23108440 | Msa0494750:three_prime_UTR | 30.0% | |
| TACTTCAAATTAGGCATCAG+AGG | + | chr3_4:23106035-23106054 | Msa0494750:CDS | 35.0% | |
| ! | TGAAGGATTTGCAGATTTTC+AGG | + | chr3_4:23106236-23106255 | Msa0494750:CDS | 35.0% |
| TTAATCATACGGTCTAGATG+GGG | + | chr3_4:23106362-23106381 | Msa0494750:intron | 35.0% | |
| ATCAATAGGTGGTCTATTGT+TGG | + | chr3_4:23106525-23106544 | Msa0494750:intron | 35.0% | |
| GTTATTCACCTAATCAGACT+AGG | + | chr3_4:23106946-23106965 | Msa0494750:CDS | 35.0% | |
| !! | TCATTAGCCTTTGTCTTTGA+TGG | + | chr3_4:23107123-23107142 | Msa0494750:CDS | 35.0% |
| !!! | GTAAGGGTTTTATTGGTATC+TGG | + | chr3_4:23107342-23107361 | Msa0494750:CDS | 35.0% |
| TGAAAGCAAGTAACTGTTTG+TGG | + | chr3_4:23107432-23107451 | Msa0494750:intron | 35.0% | |
| ATAAGCGCTCATCATATAAG+TGG | - | chr3_4:23107602-23107621 | None:intergenic | 35.0% | |
| !! | GTAGTTTTTGCATCTAAGGT+AGG | + | chr3_4:23107700-23107719 | Msa0494750:intron | 35.0% |
| AACATGTCAAATGCATATGC+AGG | + | chr3_4:23107948-23107967 | Msa0494750:intron | 35.0% | |
| TATATCCTCAAGACAATGTG+TGG | - | chr3_4:23108012-23108031 | None:intergenic | 35.0% | |
| CTCTACTATAGTGATAGTCT+TGG | + | chr3_4:23108131-23108150 | Msa0494750:three_prime_UTR | 35.0% | |
| ACAACACTAGGACGTATAAA+TGG | - | chr3_4:23108163-23108182 | None:intergenic | 35.0% | |
| ATGTTGTCAATTGTGGAATG+CGG | + | chr3_4:23108197-23108216 | Msa0494750:three_prime_UTR | 35.0% | |
| TAGAAGAATCAGGTCTAATC+GGG | - | chr3_4:23108288-23108307 | None:intergenic | 35.0% | |
| GTAGAAGAATCAGGTCTAAT+CGG | - | chr3_4:23108289-23108308 | None:intergenic | 35.0% | |
| TACTCAGTGTTGTCAAATAG+GGG | - | chr3_4:23108338-23108357 | None:intergenic | 35.0% | |
| GATACTCAGTGTTGTCAAAT+AGG | - | chr3_4:23108340-23108359 | None:intergenic | 35.0% | |
| GTATGCATTGAATGTCGCTA+TGG | + | chr3_4:23105995-23106014 | Msa0494750:exon | 40.0% | |
| ATCTGCAAATCCTTCATGCT+TGG | - | chr3_4:23106232-23106251 | None:intergenic | 40.0% | |
| ! | GACAGTTCAAGTTTCATGCT+TGG | - | chr3_4:23106337-23106356 | None:intergenic | 40.0% |
| GAATGTCACTGCTATAACTC+TGG | - | chr3_4:23106551-23106570 | None:intergenic | 40.0% | |
| AAGGTTAGGTCCAATTCCAA+TGG | + | chr3_4:23106600-23106619 | Msa0494750:CDS | 40.0% | |
| TGGTTTAGCTGTTGCAATAC+AGG | + | chr3_4:23106675-23106694 | Msa0494750:CDS | 40.0% | |
| GCTAGAATTGCCTGTGATAA+AGG | - | chr3_4:23106778-23106797 | None:intergenic | 40.0% | |
| AAGTAACTACTGCTGCAACA+AGG | + | chr3_4:23106827-23106846 | Msa0494750:CDS | 40.0% | |
| !! | GTTGGAGGTGGATTATACTT+TGG | + | chr3_4:23106895-23106914 | Msa0494750:CDS | 40.0% |
| TTGTGCTGGGAAAATATACC+GGG | - | chr3_4:23106975-23106994 | None:intergenic | 40.0% | |
| GTTGTGCTGGGAAAATATAC+CGG | - | chr3_4:23106976-23106995 | None:intergenic | 40.0% | |
| CTAATCTATTGCGTTGTGCT+GGG | - | chr3_4:23106988-23107007 | None:intergenic | 40.0% | |
| ACTAATCTATTGCGTTGTGC+TGG | - | chr3_4:23106989-23107008 | None:intergenic | 40.0% | |
| GTTCACACCATCAAAGACAA+AGG | - | chr3_4:23107133-23107152 | None:intergenic | 40.0% | |
| !! | GTCTTTGATGGTGTGAACTA+TGG | + | chr3_4:23107135-23107154 | Msa0494750:CDS | 40.0% |
| CATGCGAAGACTCATATAGA+TGG | - | chr3_4:23107378-23107397 | None:intergenic | 40.0% | |
| ! | AGAACTAGAGTCGTCGATTA+AGG | - | chr3_4:23107663-23107682 | None:intergenic | 40.0% |
| !! | GACGACTCTAGTTCTTAACA+TGG | + | chr3_4:23107668-23107687 | Msa0494750:intron | 40.0% |
| TGTCAAATGCATATGCAGGA+TGG | + | chr3_4:23107952-23107971 | Msa0494750:intron | 40.0% | |
| GTCAAATGCATATGCAGGAT+GGG | + | chr3_4:23107953-23107972 | Msa0494750:intron | 40.0% | |
| ACGATACTGGATACAACACT+AGG | - | chr3_4:23108175-23108194 | None:intergenic | 40.0% | |
| ATTGACAACATGGACGATAC+TGG | - | chr3_4:23108188-23108207 | None:intergenic | 40.0% | |
| ATCGTCCATGTTGTCAATTG+TGG | + | chr3_4:23108190-23108209 | Msa0494750:three_prime_UTR | 40.0% | |
| GCATTCCACAATTGACAACA+TGG | - | chr3_4:23108198-23108217 | None:intergenic | 40.0% | |
| AGCGACATTCAATGCATACC+CGG | - | chr3_4:23105994-23106013 | None:intergenic | 45.0% | |
| ! | CTGAGAGAGCACATGTGAAA+TGG | - | chr3_4:23106066-23106085 | None:intergenic | 45.0% |
| AATCCTTCATGCTTGGAGGT+AGG | - | chr3_4:23106225-23106244 | None:intergenic | 45.0% | |
| TGCAAATCCTTCATGCTTGG+AGG | - | chr3_4:23106229-23106248 | None:intergenic | 45.0% | |
| AGTCTCGGGAGATAAATGGT+CGG | - | chr3_4:23106412-23106431 | None:intergenic | 45.0% | |
| TCTGAGTCTCGGGAGATAAA+TGG | - | chr3_4:23106416-23106435 | None:intergenic | 45.0% | |
| TGCTGCTAATGAGGCTGATA+AGG | - | chr3_4:23106581-23106600 | None:intergenic | 45.0% | |
| TATCAGCCTCATTAGCAGCA+AGG | + | chr3_4:23106581-23106600 | Msa0494750:CDS | 45.0% | |
| ACCTAACCTTGCTGCTAATG+AGG | - | chr3_4:23106590-23106609 | None:intergenic | 45.0% | |
| TGGAATGCAGCCATTGGAAT+TGG | - | chr3_4:23106613-23106632 | None:intergenic | 45.0% | |
| AGCTAAACCATCAGCGAGAA+GGG | - | chr3_4:23106665-23106684 | None:intergenic | 45.0% | |
| GTTGGACTCTCTCTAGTAGT+TGG | + | chr3_4:23106877-23106896 | Msa0494750:CDS | 45.0% | |
| !! | GGTGGATTATACTTTGGAGC+CGG | + | chr3_4:23106901-23106920 | Msa0494750:CDS | 45.0% |
| CGCTTATTCTGCATACTCCT+TGG | + | chr3_4:23107170-23107189 | Msa0494750:CDS | 45.0% | |
| ATGAGTCTTCGCATGTTTGC+TGG | + | chr3_4:23107383-23107402 | Msa0494750:CDS | 45.0% | |
| ! | TTCGCATGTTTGCTGGTGTA+TGG | + | chr3_4:23107390-23107409 | Msa0494750:CDS | 45.0% |
| ! | TCGTCGATTAAGGCCATGTT+AGG | - | chr3_4:23107653-23107672 | None:intergenic | 45.0% |
| CGATGTGATCGAGATGTTCT+TGG | - | chr3_4:23107816-23107835 | None:intergenic | 45.0% | |
| GACCTGATTCTTCTACGCTA+TGG | + | chr3_4:23108293-23108312 | Msa0494750:three_prime_UTR | 45.0% | |
| TGCCATAGCGTAGAAGAATC+AGG | - | chr3_4:23108298-23108317 | None:intergenic | 45.0% | |
| TCTCCTACCTCCAAGCATGA+AGG | + | chr3_4:23106219-23106238 | Msa0494750:CDS | 50.0% | |
| CGGGAGATAAATGGTCGGAT+CGG | - | chr3_4:23106407-23106426 | None:intergenic | 50.0% | |
| GCCTCATTAGCAGCAAGGTT+AGG | + | chr3_4:23106586-23106605 | Msa0494750:CDS | 50.0% | |
| ! | CAGGTTTGGAATGCAGCCAT+TGG | - | chr3_4:23106619-23106638 | None:intergenic | 50.0% |
| AGGATGTCATCCAAACCTGG+AGG | - | chr3_4:23106642-23106661 | None:intergenic | 50.0% | |
| TAAACCATCAGCGAGAAGGG+AGG | - | chr3_4:23106662-23106681 | None:intergenic | 50.0% | |
| CAGCTAAACCATCAGCGAGA+AGG | - | chr3_4:23106666-23106685 | None:intergenic | 50.0% | |
| GGACTCTCTCTAGTAGTTGG+AGG | + | chr3_4:23106880-23106899 | Msa0494750:CDS | 50.0% | |
| CTCTCTCTAGTAGTTGGAGG+TGG | + | chr3_4:23106883-23106902 | Msa0494750:CDS | 50.0% | |
| TGCTGGGAAAATATACCGGG+AGG | - | chr3_4:23106972-23106991 | None:intergenic | 50.0% | |
| ! | GCATGTTTGCTGGTGTATGG+AGG | + | chr3_4:23107393-23107412 | Msa0494750:CDS | 50.0% |
| TGCATATGCAGGATGGGAAC+AGG | + | chr3_4:23107959-23107978 | Msa0494750:intron | 50.0% | |
| AGAGGCCACACATTGTCTTG+AGG | + | chr3_4:23108004-23108023 | Msa0494750:CDS | 50.0% | |
| TGCATTCCAAACCTGCCTCC+AGG | + | chr3_4:23106624-23106643 | Msa0494750:CDS | 55.0% | |
| TCCAAACCTGCCTCCAGGTT+TGG | + | chr3_4:23106629-23106648 | Msa0494750:CDS | 55.0% | |
| TCCAAACCTGGAGGCAGGTT+TGG | - | chr3_4:23106633-23106652 | None:intergenic | 55.0% | |
| TGTCATCCAAACCTGGAGGC+AGG | - | chr3_4:23106638-23106657 | None:intergenic | 55.0% | |
| GGGAGGATGTCATCCAAACC+TGG | - | chr3_4:23106645-23106664 | None:intergenic | 55.0% | |
| ACATCCTCCCTTCTCGCTGA+TGG | + | chr3_4:23106655-23106674 | Msa0494750:CDS | 55.0% | |
| CCTAATCAGACTAGGCCTCC+CGG | + | chr3_4:23106954-23106973 | Msa0494750:CDS | 55.0% | |
| TGCAGGATGGGAACAGGAAC+AGG | + | chr3_4:23107965-23107984 | Msa0494750:intron | 55.0% | |
| ! | TGGCCTCTGAGAAAACGCCA+GGG | - | chr3_4:23107992-23108011 | None:intergenic | 55.0% |
| CCGGGAGGCCTAGTCTGATT+AGG | - | chr3_4:23106957-23106976 | None:intergenic | 60.0% | |
| TGGGAACAGGAACAGGACCC+TGG | + | chr3_4:23107972-23107991 | Msa0494750:CDS | 60.0% | |
| ! | GGACCCTGGCGTTTTCTCAG+AGG | + | chr3_4:23107986-23108005 | Msa0494750:CDS | 60.0% |
| ! | GTGGCCTCTGAGAAAACGCC+AGG | - | chr3_4:23107993-23108012 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 23105991 | 23108456 | 23105991 | ID=Msa0494750;Name=Msa0494750 |
| chr3_4 | mRNA | 23105991 | 23108456 | 23105991 | ID=Msa0494750-mRNA-1;Parent=Msa0494750;Name=Msa0494750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=23|1|1|1|1|0.85|7|432|265 |
| chr3_4 | exon | 23105991 | 23106084 | 23105991 | ID=Msa0494750-mRNA-1:exon:5722;Parent=Msa0494750-mRNA-1 |
| chr3_4 | exon | 23106171 | 23106271 | 23106171 | ID=Msa0494750-mRNA-1:exon:5723;Parent=Msa0494750-mRNA-1 |
| chr3_4 | exon | 23106533 | 23106696 | 23106533 | ID=Msa0494750-mRNA-1:exon:5724;Parent=Msa0494750-mRNA-1 |
| chr3_4 | exon | 23106787 | 23106975 | 23106787 | ID=Msa0494750-mRNA-1:exon:5725;Parent=Msa0494750-mRNA-1 |
| chr3_4 | exon | 23107096 | 23107191 | 23107096 | ID=Msa0494750-mRNA-1:exon:5726;Parent=Msa0494750-mRNA-1 |
| chr3_4 | exon | 23107293 | 23107414 | 23107293 | ID=Msa0494750-mRNA-1:exon:5727;Parent=Msa0494750-mRNA-1 |
| chr3_4 | exon | 23107970 | 23108456 | 23107970 | ID=Msa0494750-mRNA-1:exon:5728;Parent=Msa0494750-mRNA-1 |
| chr3_4 | five_prime_UTR | 23105991 | 23106013 | 23105991 | ID=Msa0494750-mRNA-1:five_prime_utr;Parent=Msa0494750-mRNA-1 |
| chr3_4 | CDS | 23106014 | 23106084 | 23106014 | ID=Msa0494750-mRNA-1:cds;Parent=Msa0494750-mRNA-1 |
| chr3_4 | CDS | 23106171 | 23106271 | 23106171 | ID=Msa0494750-mRNA-1:cds;Parent=Msa0494750-mRNA-1 |
| chr3_4 | CDS | 23106533 | 23106696 | 23106533 | ID=Msa0494750-mRNA-1:cds;Parent=Msa0494750-mRNA-1 |
| chr3_4 | CDS | 23106787 | 23106975 | 23106787 | ID=Msa0494750-mRNA-1:cds;Parent=Msa0494750-mRNA-1 |
| chr3_4 | CDS | 23107096 | 23107191 | 23107096 | ID=Msa0494750-mRNA-1:cds;Parent=Msa0494750-mRNA-1 |
| chr3_4 | CDS | 23107293 | 23107414 | 23107293 | ID=Msa0494750-mRNA-1:cds;Parent=Msa0494750-mRNA-1 |
| chr3_4 | CDS | 23107970 | 23108024 | 23107970 | ID=Msa0494750-mRNA-1:cds;Parent=Msa0494750-mRNA-1 |
| chr3_4 | three_prime_UTR | 23108025 | 23108456 | 23108025 | ID=Msa0494750-mRNA-1:three_prime_utr;Parent=Msa0494750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
