AlfalfaGEDB | Msa0480430

M. sativa cultivar zhongmu-4 / Msa0480430

KEGG: -
GO: GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480430	XP_003603420.1	93.333	330	11	2	1	319	1	330	0.0	618

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480430	sp\|Q8H0V5\|OCP3_ARATH	48.659	261	125	1	61	312	91	351	8.88e-66	213

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480430	G7JB43	93.333	330	11	2	1	319	1	330	0.0	618

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TFs/TRs:

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Gene ID	Type	Classification
Msa0480430	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012380	Msa0480430	0.831568	1.550403e-55	-8.615850e-47
Msa0017130	Msa0480430	0.810911	9.108548e-51	-8.615850e-47
Msa0024900	Msa0480430	0.809824	1.563166e-50	-8.615850e-47
Msa0027030	Msa0480430	0.816864	4.438231e-52	-8.615850e-47
Msa0036550	Msa0480430	-0.815533	8.803595e-52	-8.615850e-47
Msa0037270	Msa0480430	0.812541	4.025014e-51	-8.615850e-47
Msa0037300	Msa0480430	0.822667	2.095966e-53	-8.615850e-47
Msa0039020	Msa0480430	0.812553	4.002112e-51	-8.615850e-47
Msa0039550	Msa0480430	0.803938	2.744515e-49	-8.615850e-47
Msa0042210	Msa0480430	0.822760	1.993212e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480430	MtrunA17_Chr3g0137971	93.333	330	11	2	1	319	1	330	0.0	618

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0480430	AT5G11270.1	48.659	261	125	1	61	312	91	351	9.03e-67	213

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Find 64 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGACTCATGTTACAG+AGG	0.638213	3_3:-85707107	Msa0480430:CDS
AAAGGCTCAACTTGACACGC+TGG	0.611700	3_3:-85705518	Msa0480430:CDS
AAAGGCTTACACTTAGTTTG+CGG	0.505407	3_3:+85706777	None:intergenic
AAATGAATACGAGAACATTT+TGG	0.252301	3_3:+85704120	None:intergenic
AAATTGACTCATGTTACAGA+GGG	0.567201	3_3:-85707106	Msa0480430:CDS
AACTTGGCAATTGAATACAT+TGG	0.575518	3_3:-85706822	Msa0480430:CDS
AAGACAAACGTGCCGAGGAG+GGG	0.620622	3_3:-85704408	Msa0480430:CDS
AATTGACTCATGTTACAGAG+GGG	0.739510	3_3:-85707105	Msa0480430:CDS
ACAGATATCAGCGAAACACA+AGG	0.708447	3_3:-85706902	Msa0480430:CDS
ACCAGCCTTGATCACGCTTG+GGG	0.548676	3_3:-85704255	Msa0480430:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTGAAAAGCAACTCAAA+TGG	+	chr3_3:85704502-85704521	None:intergenic	30.0%
AACTTGGCAATTGAATACAT+TGG	-	chr3_3:85704744-85704763	Msa0480430:intron	30.0%
GTGTATCAGATGATATGAAT+AGG	-	chr3_3:85705002-85705021	Msa0480430:intron	30.0%
ATCATACAGGTATTTCATGT+AGG	+	chr3_3:85705073-85705092	None:intergenic	30.0%
AAATGCAGATCATATCATAC+AGG	+	chr3_3:85705086-85705105	None:intergenic	30.0%
TCTTAAACACTTGTCTTGTA+TGG	+	chr3_3:85705117-85705136	None:intergenic	30.0%
TTAAGAAACCAAAATGCTTG+TGG	-	chr3_3:85705131-85705150	Msa0480430:intron	30.0%
CCTTATCAATGAATGACAAA+AGG	+	chr3_3:85705242-85705261	None:intergenic	30.0%
TTATCTGCAACAAATTCGAA+AGG	+	chr3_3:85705769-85705788	None:intergenic	30.0%
ATAGGTAAGTTAGACTTCTT+CGG	+	chr3_3:85705986-85706005	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	85704093	85707495	85704093	ID=Msa0480430;Name=Msa0480430
chr3_3	mRNA	85704093	85707495	85704093	ID=Msa0480430-mRNA-1;Parent=Msa0480430;Name=Msa0480430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=77\|1\|1\|1\|1\|1\|4\|264\|319
chr3_3	exon	85704093	85704497	85704093	ID=Msa0480430-mRNA-1:exon:24717;Parent=Msa0480430-mRNA-1
chr3_3	exon	85705486	85705803	85705486	ID=Msa0480430-mRNA-1:exon:24716;Parent=Msa0480430-mRNA-1
chr3_3	exon	85706787	85707131	85706787	ID=Msa0480430-mRNA-1:exon:24715;Parent=Msa0480430-mRNA-1
chr3_3	exon	85707263	85707495	85707263	ID=Msa0480430-mRNA-1:exon:24714;Parent=Msa0480430-mRNA-1
chr3_3	five_prime_UTR	85707419	85707495	85707419	ID=Msa0480430-mRNA-1:five_prime_utr;Parent=Msa0480430-mRNA-1
chr3_3	CDS	85707263	85707418	85707263	ID=Msa0480430-mRNA-1:cds;Parent=Msa0480430-mRNA-1
chr3_3	CDS	85706787	85707131	85706787	ID=Msa0480430-mRNA-1:cds;Parent=Msa0480430-mRNA-1
chr3_3	CDS	85705486	85705803	85705486	ID=Msa0480430-mRNA-1:cds;Parent=Msa0480430-mRNA-1
chr3_3	CDS	85704357	85704497	85704357	ID=Msa0480430-mRNA-1:cds;Parent=Msa0480430-mRNA-1
chr3_3	three_prime_UTR	85704093	85704356	85704093	ID=Msa0480430-mRNA-1:three_prime_utr;Parent=Msa0480430-mRNA-1

Gene Sequence

>Msa0480430

ATGGCCGTCGCGAATCAGTGTTTAGTCACAGTCAGAGGAACCCAATCCTCTTCTTTGCAGCGAAAACCTCTTCTCTTCTCCTTCACTCTTCCTTCTCGCTCTCAAAACCTCTACTCTTCAATTGTCACCGCCTCTTCCAAAAAGAAAAACAATAAGAAAAAATTGACTCATGTTACAGAGGGGAATGACGAGGAGGATCCATTTGAGTTGCTTTTCAAACAACTCGAAGAAGATCTCAAAAACGATGATGATTTGTCAAAAGAAGATAGCGATGACGACGACGAGATAAGTGACGAAGATTTTGCTTTGTTAGAACGTGAGTTGGAAGGTGTGTTGGGTGAATTTGATGCTGAATTGTTGAACACAGATATCAGCGAAACACAAGGTGATAATGATGTAGAAAAAAGTAGTGGCGATGGAAATGATAATTCGCTGAAGCTTAGAACTTGGCAATTGAATACATTGGCTAGAGCATTGAAAACTGGACGCCGCAAACTAAGTATAAAAGCTCTTGCTGCCGAGCTCTGTCTTGATAGAGCTCTTGTTCTTGATTTGCTTCGTAACCCTCCACCAAGTCTTCTGATGCTGAGCCTATCGATTCCTGATGAACCTAAACCATCAGCAGTATCACCTGAAACTACGCCCGGAGATTCTTTTTATAAAGAAACAAGTGCAGATCATGCTCATGCAGAATCTGGACCGAAGAAGTCTAACTTACCTATTCATGACATGCAACAGAATTGGTCTTCTCGAAAGAGATTGAAAAAGGCTCAACTTGACACGCTGGAGAGAGTTTACATGAGATCAAAGCGGCCCACTAATGCAATGATTAGTAATATTGTGCATGTTTCAAACATTCCGCGGAGAACAGTTATTAAGTGGTTTGAAGACAAACGTGCCGAGGAGGGGGTTCCAGAGCATCGTCTTCCTTACCAGCAGTCTGCTAATGAAACAAGTTGA

Protein sequence

>Msa0480430

MAVANQCLVTVRGTQSSSLQRKPLLFSFTLPSRSQNLYSSIVTASSKKKNNKKKLTHVTEGNDEEDPFELLFKQLEEDLKNDDDLSKEDSDDDDEISDEDFALLERELEGVLGEFDAELLNTDISETQGDNDVEKSSGDGNDNSLKLRTWQLNTLARALKTGRRKLSIKALAAELCLDRALVLDLLRNPPPSLLMLSLSIPDEPKPSAVSPETTPGDSFYKETSADHAHAESGPKKSNLPIHDMQQNWSSRKRLKKAQLDTLERVYMRSKRPTNAMISNIVHVSNIPRRTVIKWFEDKRAEEGVPEHRLPYQQSANETS*