AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509850 MtrunA17_Chr3g0114991 98.234 453 7 1 1 453 1 452 0.0 917
Msa0509850 MtrunA17_Chr1g0156521 56.721 305 105 7 157 450 111 399 1.80e-113 339
Msa0509850 MtrunA17_Chr4g0042091 51.653 242 103 7 215 449 200 434 4.79e-72 234
Msa0509850 MtrunA17_Chr3g0104431 49.798 247 109 10 213 450 147 387 2.69e-65 214
Msa0509850 MtrunA17_Chr2g0280501 41.077 297 142 12 177 451 91 376 7.31e-49 171
Msa0509850 MtrunA17_Chr5g0399041 38.426 216 97 9 241 451 105 289 3.70e-35 132
Msa0509850 MtrunA17_Chr8g0376191 42.529 174 85 6 283 451 2 165 5.04e-32 120
Msa0509850 MtrunA17_Chr4g0056461 36.019 211 98 6 244 451 98 274 3.20e-31 121
Msa0509850 MtrunA17_Chr5g0445321 31.122 196 120 5 257 450 1 183 7.62e-29 112
Msa0509850 MtrunA17_Chr2g0280521 50.909 110 53 1 248 357 10 118 1.04e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509850 AT1G75710.1 54.515 299 92 8 183 451 174 458 1.80e-99 306
Msa0509850 AT5G54630.1 49.231 260 112 8 205 449 215 469 3.58e-72 235
Msa0509850 AT4G27240.1 51.046 239 102 7 219 449 197 428 1.63e-70 230
Msa0509850 AT2G29660.1 47.244 254 107 11 217 450 125 371 2.84e-57 193
Msa0509850 AT4G27240.2 49.528 212 93 6 219 422 197 402 4.17e-57 194
Msa0509850 AT1G11490.2 38.247 251 127 9 217 451 126 364 4.44e-44 158
Msa0509850 AT1G11490.1 38.247 251 127 9 217 451 126 364 4.44e-44 158
Msa0509850 AT1G62520.1 37.850 214 95 9 242 451 100 279 2.44e-31 122
Msa0509850 AT4G22560.1 34.419 215 94 7 241 451 92 263 3.27e-29 115
Msa0509850 AT4G12450.1 34.071 226 99 8 236 451 91 276 2.62e-26 108

Find 104 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGGAGCTGGTTCTTTC+AGG 0.067042 3_4:-58445982 Msa0509850:CDS
GTTGCTGCTGTTGTTATTTC+TGG 0.093690 3_4:+58446175 None:intergenic
TGCTGGGGCTTATTCTAATT+TGG 0.219703 3_4:-58444757 Msa0509850:CDS
ACAACATTTGTTTGTTCTTT+AGG 0.234916 3_4:-58445062 Msa0509850:CDS
CTTCCTTCTGCTGTTGTTGT+TGG 0.236133 3_4:+58446371 None:intergenic
TCTGTGTGTTGTGGACTTTA+AGG 0.242925 3_4:+58445201 None:intergenic
CATCTTCTTGCATTTCTTGT+TGG 0.257607 3_4:+58446246 None:intergenic
TACAGATATTCACAAGAAAA+AGG 0.264395 3_4:-58446137 Msa0509850:CDS
GTGTGAGTGGAGGCTCTTTA+TGG 0.265286 3_4:+58446656 None:intergenic
GTCTCTGTACTCTTCGAATT+TGG 0.269606 3_4:+58445169 None:intergenic
ATGTTCTTGCTTGTATCTTC+TGG 0.271296 3_4:+58445290 None:intergenic
GCAGCATCTTCTAACTCTTC+TGG 0.278189 3_4:-58445998 Msa0509850:CDS
TTGTAATGGTAACCTTTCTT+TGG 0.293073 3_4:+58446494 None:intergenic
CTTTCAGGGGAATGCAGTTT+AGG 0.302208 3_4:-58445967 Msa0509850:CDS
GTACTCTTCGAATTTGGTTA+TGG 0.302636 3_4:+58445175 None:intergenic
TCGGTTAGTGCTGGTGATGC+TGG 0.309847 3_4:-58444774 Msa0509850:CDS
ATGGTTGTTGACCCTGTTCT+TGG 0.318988 3_4:-58445917 Msa0509850:CDS
CGACAAAGCTAGTAGTGTTT+TGG 0.320624 3_4:-58444913 Msa0509850:CDS
TTCATTCAAAGGAGCTTTCA+TGG 0.322337 3_4:+58446066 None:intergenic
AGGATTGTATATGTATATTA+AGG 0.348260 3_4:-58444449 Msa0509850:three_prime_UTR
AGAGGGCAATGTTGGTTTGT+AGG 0.352259 3_4:-58444860 Msa0509850:CDS
TATAGTAGAAAACTAGAATA+TGG 0.357201 3_4:+58446593 None:intergenic
TTCTTTGCAATGTCACTTGA+TGG 0.364460 3_4:-58444624 Msa0509850:three_prime_UTR
TTCTGGAGCTGGTTCTTTCA+GGG 0.364982 3_4:-58445981 Msa0509850:CDS
TGCTTTGTTGTAATCTATAG+AGG 0.380068 3_4:-58444696 Msa0509850:CDS
TGCAAGAAGATGAAATGTTC+AGG 0.398226 3_4:-58446235 Msa0509850:CDS
CGGTTAGTGCTGGTGATGCT+GGG 0.399016 3_4:-58444773 Msa0509850:CDS
GGAAGGTGGTAGTAATGTTA+TGG 0.410378 3_4:-58444808 Msa0509850:CDS
GAGGGCAATGTTGGTTTGTA+GGG 0.412856 3_4:-58444859 Msa0509850:CDS
CCCTCTTGGGCGGTGGTAAG+AGG 0.414370 3_4:-58446421 Msa0509850:CDS
TTCATAATCTCACCACAATC+AGG 0.424627 3_4:+58445851 None:intergenic
TGACAGCTTGATGAAGTTCA+AGG 0.429196 3_4:+58445819 None:intergenic
GCTTCTTTAGCCAGCTTGAA+TGG 0.430042 3_4:+58445252 None:intergenic
TTGGCTTATATGATTTGTAA+TGG 0.438159 3_4:+58446480 None:intergenic
TTGGTTTGTAGGGTGATAGC+AGG 0.448552 3_4:-58444849 Msa0509850:CDS
TTGGGAGTTGGGAGTGTGAG+TGG 0.450431 3_4:+58446643 None:intergenic
ATCAATCCCACTAAAATCAA+TGG 0.452319 3_4:-58444488 Msa0509850:three_prime_UTR
TATGCCGCACACGTTGCATT+GGG 0.458299 3_4:+58445004 None:intergenic
TCTCTAGTGAAACCAAGAAC+AGG 0.464340 3_4:+58445905 None:intergenic
AACAGAGAAACAACCCTCTT+GGG 0.466270 3_4:-58446434 Msa0509850:CDS
CATATATTAGTTTCTGAGCT+GGG 0.466347 3_4:-58445314 Msa0509850:intron
TCTAGCTAAATTTAGTTCAC+TGG 0.466837 3_4:-58444568 Msa0509850:three_prime_UTR
AGAGGTTTGAGGAACCGTTT+AGG 0.468308 3_4:+58445039 None:intergenic
GTTTCCGTCTGCTATGCAGC+GGG 0.469149 3_4:+58445106 None:intergenic
GCATATATTAGTTTCTGAGC+TGG 0.470447 3_4:-58445315 Msa0509850:intron
TCTTCTAACTCTTCTGGAGC+TGG 0.470479 3_4:-58445992 Msa0509850:CDS
GTTTGTTCTTTAGGCCTAAA+CGG 0.471880 3_4:-58445053 Msa0509850:CDS
AAACAGAGAAACAACCCTCT+TGG 0.479509 3_4:-58446435 Msa0509850:CDS
AACTGCATTTATGTATGTAT+TGG 0.481938 3_4:-58444523 Msa0509850:three_prime_UTR
ACAATCAGGACAAGAACAAA+TGG 0.483435 3_4:+58445865 None:intergenic
TGTTGAGTTGCAGAGGTTTG+AGG 0.485252 3_4:+58445028 None:intergenic
CAGACGGAAACGAGTTACTA+AGG 0.485531 3_4:-58445094 Msa0509850:CDS
TACAAATCATATAAGCCAAA+AGG 0.487150 3_4:-58446476 Msa0509850:CDS
ATTTGTTCTTGTCCTGATTG+TGG 0.489818 3_4:-58445863 Msa0509850:CDS
TTATGCCGCACACGTTGCAT+TGG 0.500527 3_4:+58445003 None:intergenic
AAACACGGGTTTAAGTTGAA+TGG 0.502774 3_4:-58444978 Msa0509850:CDS
TGATGAGAAGAGGGCAATGT+TGG 0.513521 3_4:-58444868 Msa0509850:CDS
CATTCGACACTCGTAACAAC+CGG 0.518656 3_4:+58445937 None:intergenic
TCTGGAGCTGGTTCTTTCAG+GGG 0.520859 3_4:-58445980 Msa0509850:CDS
GACCTTTCAGGTTGTGAGAG+TGG 0.524110 3_4:-58444891 Msa0509850:CDS
AAATAATATTCCATTCAAGC+TGG 0.528424 3_4:-58445262 Msa0509850:CDS
AAGCAAGGTAAAATAGCTCT+AGG 0.537013 3_4:+58444714 None:intergenic
TGTTATGGAAGAGTATGATT+CGG 0.537909 3_4:-58444793 Msa0509850:CDS
CGGTTGTTACGAGTGTCGAA+TGG 0.544614 3_4:-58445936 Msa0509850:CDS
TGAGAGTGGTGATGAGAAGA+GGG 0.545449 3_4:-58444877 Msa0509850:CDS
ATGCAGTTTAGGAGACTCTC+CGG 0.548192 3_4:-58445956 Msa0509850:CDS
CTTCCGTTGAGTTCATTCAA+AGG 0.552983 3_4:+58446055 None:intergenic
GAGTATGATTCGGTTAGTGC+TGG 0.553594 3_4:-58444783 Msa0509850:CDS
GTACTAATAAACAAAGTGCT+AGG 0.556960 3_4:-58446688 None:intergenic
GTGAAGAAGAACATGGAAGG+TGG 0.558857 3_4:-58444822 Msa0509850:CDS
GGTTCACTCTGCAACAACAC+TGG 0.561299 3_4:-58446214 Msa0509850:CDS
GAAACAACCCTCTTGGGCGG+TGG 0.562290 3_4:-58446428 Msa0509850:CDS
GTGAGAGTGGTGATGAGAAG+AGG 0.564974 3_4:-58444878 Msa0509850:CDS
TAGAAAACTAGAATATGGTA+TGG 0.565951 3_4:+58446598 None:intergenic
TTAAGTTGAATGGTAGCGAT+GGG 0.566451 3_4:-58444968 Msa0509850:CDS
AAAATGGTGTTTCTATAACA+TGG 0.568328 3_4:+58446541 None:intergenic
CATCAAGCTGTCAAACATGC+AGG 0.569618 3_4:-58445809 Msa0509850:intron
TGAAAGTGAAGACGAAGAAG+AGG 0.573976 3_4:+58446021 None:intergenic
TTTAAGTTGAATGGTAGCGA+TGG 0.575452 3_4:-58444969 Msa0509850:CDS
AGAGTGAAGAAGAACATGGA+AGG 0.577959 3_4:-58444825 Msa0509850:CDS
GCCTCTTACCACCGCCCAAG+AGG 0.582339 3_4:+58446420 None:intergenic
ATGGAAAGAGTACTTAAACT+AGG 0.583068 3_4:-58444469 Msa0509850:three_prime_UTR
CACCACTCTCACAACCTGAA+AGG 0.586123 3_4:+58444889 None:intergenic
TTCCGTCTGCTATGCAGCGG+GGG 0.586954 3_4:+58445108 None:intergenic
TGGTTTGTAGGGTGATAGCA+GGG 0.589739 3_4:-58444848 Msa0509850:CDS
TGTTGTGGACTTTAAGGATG+CGG 0.593997 3_4:+58445207 None:intergenic
CTATAGATTACAACAAAGCA+AGG 0.600839 3_4:+58444699 None:intergenic
ATTGGGATGTTGAGTTGCAG+AGG 0.601738 3_4:+58445021 None:intergenic
AATCCAACAACAACAGCAGA+AGG 0.606544 3_4:-58446374 Msa0509850:CDS
CCTCTTACCACCGCCCAAGA+GGG 0.611776 3_4:+58446421 None:intergenic
GGAGTTGGGAGTGTGAGTGG+AGG 0.612055 3_4:+58446646 None:intergenic
CGTTTCCGTCTGCTATGCAG+CGG 0.617775 3_4:+58445105 None:intergenic
CAACAACACTGGAATGACAA+TGG 0.620216 3_4:-58446203 Msa0509850:CDS
CTCTAGTGAAACCAAGAACA+GGG 0.633221 3_4:+58445906 None:intergenic
AGTGAACTAAATTTAGCTAG+AGG 0.643108 3_4:+58444570 None:intergenic
TTTCCGTCTGCTATGCAGCG+GGG 0.644816 3_4:+58445107 None:intergenic
ACATCCCAATGCAACGTGTG+CGG 0.650064 3_4:-58445008 Msa0509850:CDS
GTGTGCGGCATAATAAAACA+CGG 0.650403 3_4:-58444993 Msa0509850:CDS
GGTTAGTGCTGGTGATGCTG+GGG 0.653244 3_4:-58444772 Msa0509850:CDS
GCTCCTTTGAATGAACTCAA+CGG 0.658606 3_4:-58446058 Msa0509850:CDS
AGAGAAACAACCCTCTTGGG+CGG 0.687568 3_4:-58446431 Msa0509850:CDS
TGTGCGGCATAATAAAACAC+GGG 0.688551 3_4:-58444992 Msa0509850:CDS
AGGGAGAGTGAAGAAGAACA+TGG 0.698562 3_4:-58444829 Msa0509850:CDS
ATATTGACGACAGCAACGAG+TGG 0.716849 3_4:-58444945 Msa0509850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGAAACTAAAGATTAT+AGG + chr3_4:58445357-58445376 None:intergenic 15.0%
!! TTATTGAAACTAAAGATTAT+AGG + chr3_4:58445357-58445376 None:intergenic 15.0%
!!! ATTCTTGTTTTAGGTTTATT+GGG + chr3_4:58444496-58444515 None:intergenic 20.0%
!! TATAGTAGAAAACTAGAATA+TGG + chr3_4:58444528-58444547 None:intergenic 20.0%
!! TTTGCTCATTGTAAAAAAAA+TGG + chr3_4:58444596-58444615 None:intergenic 20.0%
!! CTTAAGAAATTAGTTACATT+TGG + chr3_4:58445456-58445475 None:intergenic 20.0%
!!! TAGTCTTAAGTTAAGATTAT+CGG + chr3_4:58445504-58445523 None:intergenic 20.0%
!! TAATCTTAACTTAAGACTAT+CGG - chr3_4:58445505-58445524 Msa0509850:intron 20.0%
!! TATATTCAATTATGGTACAT+TGG + chr3_4:58445743-58445762 None:intergenic 20.0%
!! CACTTAAGTATATTCAATTA+TGG + chr3_4:58445751-58445770 None:intergenic 20.0%
!! AGGATTGTATATGTATATTA+AGG - chr3_4:58446669-58446688 Msa0509850:five_prime_UTR 20.0%
!!! ATTCTTGTTTTAGGTTTATT+GGG + chr3_4:58444496-58444515 None:intergenic 20.0%
!! TATAGTAGAAAACTAGAATA+TGG + chr3_4:58444528-58444547 None:intergenic 20.0%
!! TTTGCTCATTGTAAAAAAAA+TGG + chr3_4:58444596-58444615 None:intergenic 20.0%
!! CTTAAGAAATTAGTTACATT+TGG + chr3_4:58445456-58445475 None:intergenic 20.0%
!!! TAGTCTTAAGTTAAGATTAT+CGG + chr3_4:58445504-58445523 None:intergenic 20.0%
!! TAATCTTAACTTAAGACTAT+CGG - chr3_4:58445505-58445524 Msa0509850:intron 20.0%
!! TATATTCAATTATGGTACAT+TGG + chr3_4:58445743-58445762 None:intergenic 20.0%
!! CACTTAAGTATATTCAATTA+TGG + chr3_4:58445751-58445770 None:intergenic 20.0%
!! AGGATTGTATATGTATATTA+AGG - chr3_4:58446669-58446688 Msa0509850:five_prime_UTR 20.0%
!!! GATTCTTGTTTTAGGTTTAT+TGG + chr3_4:58444497-58444516 None:intergenic 25.0%
!!! TATGGTATGATTCTTGTTTT+AGG + chr3_4:58444505-58444524 None:intergenic 25.0%
! TAGAAAACTAGAATATGGTA+TGG + chr3_4:58444523-58444542 None:intergenic 25.0%
!! AAAATGGTGTTTCTATAACA+TGG + chr3_4:58444580-58444599 None:intergenic 25.0%
! CAAATCAAAAATCCAAAGAA+AGG - chr3_4:58444612-58444631 Msa0509850:three_prime_UTR 25.0%
!! TTGGCTTATATGATTTGTAA+TGG + chr3_4:58444641-58444660 None:intergenic 25.0%
! TACAAATCATATAAGCCAAA+AGG - chr3_4:58444642-58444661 Msa0509850:three_prime_UTR 25.0%
!!! CTTTGTTCTTGTTTTTTCTT+TGG + chr3_4:58444820-58444839 None:intergenic 25.0%
! CAAAGAAAAAACAAGAACAA+AGG - chr3_4:58444818-58444837 Msa0509850:CDS 25.0%
! TACAGATATTCACAAGAAAA+AGG - chr3_4:58444981-58445000 Msa0509850:CDS 25.0%
! TTGAAACTAAAGATTATAGG+TGG + chr3_4:58445354-58445373 None:intergenic 25.0%
! TAATAAATGTCATTATCTCG+AGG + chr3_4:58445428-58445447 None:intergenic 25.0%
!! GATACTAGTATCCATTTTAA+TGG - chr3_4:58445475-58445494 Msa0509850:intron 25.0%
! ATTATCGGTATCCATTAAAA+TGG + chr3_4:58445489-58445508 None:intergenic 25.0%
!! TTAGGACATAATTGATTTCT+TGG - chr3_4:58445656-58445675 Msa0509850:intron 25.0%
! TGATTTCTTGGATACATTAA+TGG - chr3_4:58445668-58445687 Msa0509850:intron 25.0%
! CAGAAACTAATATATGCATA+AGG + chr3_4:58445800-58445819 None:intergenic 25.0%
! AAATAATATTCCATTCAAGC+TGG - chr3_4:58445856-58445875 Msa0509850:CDS 25.0%
! ACAACATTTGTTTGTTCTTT+AGG - chr3_4:58446056-58446075 Msa0509850:CDS 25.0%
!!! CTTTTGATAATGTGTATTGA+TGG - chr3_4:58446445-58446464 Msa0509850:CDS 25.0%
! AACTGCATTTATGTATGTAT+TGG - chr3_4:58446595-58446614 Msa0509850:five_prime_UTR 25.0%
!!! GATTCTTGTTTTAGGTTTAT+TGG + chr3_4:58444497-58444516 None:intergenic 25.0%
!!! TATGGTATGATTCTTGTTTT+AGG + chr3_4:58444505-58444524 None:intergenic 25.0%
! TAGAAAACTAGAATATGGTA+TGG + chr3_4:58444523-58444542 None:intergenic 25.0%
!! AAAATGGTGTTTCTATAACA+TGG + chr3_4:58444580-58444599 None:intergenic 25.0%
! CAAATCAAAAATCCAAAGAA+AGG - chr3_4:58444612-58444631 Msa0509850:three_prime_UTR 25.0%
!! TTGGCTTATATGATTTGTAA+TGG + chr3_4:58444641-58444660 None:intergenic 25.0%
! TACAAATCATATAAGCCAAA+AGG - chr3_4:58444642-58444661 Msa0509850:three_prime_UTR 25.0%
!!! CTTTGTTCTTGTTTTTTCTT+TGG + chr3_4:58444820-58444839 None:intergenic 25.0%
! CAAAGAAAAAACAAGAACAA+AGG - chr3_4:58444818-58444837 Msa0509850:CDS 25.0%
! TACAGATATTCACAAGAAAA+AGG - chr3_4:58444981-58445000 Msa0509850:CDS 25.0%
! TTGAAACTAAAGATTATAGG+TGG + chr3_4:58445354-58445373 None:intergenic 25.0%
! TAATAAATGTCATTATCTCG+AGG + chr3_4:58445428-58445447 None:intergenic 25.0%
!! GATACTAGTATCCATTTTAA+TGG - chr3_4:58445475-58445494 Msa0509850:intron 25.0%
! ATTATCGGTATCCATTAAAA+TGG + chr3_4:58445489-58445508 None:intergenic 25.0%
!! TTAGGACATAATTGATTTCT+TGG - chr3_4:58445656-58445675 Msa0509850:intron 25.0%
! TGATTTCTTGGATACATTAA+TGG - chr3_4:58445668-58445687 Msa0509850:intron 25.0%
! CAGAAACTAATATATGCATA+AGG + chr3_4:58445800-58445819 None:intergenic 25.0%
! AAATAATATTCCATTCAAGC+TGG - chr3_4:58445856-58445875 Msa0509850:CDS 25.0%
! ACAACATTTGTTTGTTCTTT+AGG - chr3_4:58446056-58446075 Msa0509850:CDS 25.0%
!!! CTTTTGATAATGTGTATTGA+TGG - chr3_4:58446445-58446464 Msa0509850:CDS 25.0%
! AACTGCATTTATGTATGTAT+TGG - chr3_4:58446595-58446614 Msa0509850:five_prime_UTR 25.0%
!!! TTTTAGGTTTATTGGGAGTT+GGG + chr3_4:58444489-58444508 None:intergenic 30.0%
TTGTAATGGTAACCTTTCTT+TGG + chr3_4:58444627-58444646 None:intergenic 30.0%
! CATATATTAGTTTCTGAGCT+GGG - chr3_4:58445804-58445823 Msa0509850:intron 30.0%
! TGTTATGGAAGAGTATGATT+CGG - chr3_4:58446325-58446344 Msa0509850:CDS 30.0%
CTATAGATTACAACAAAGCA+AGG + chr3_4:58446422-58446441 None:intergenic 30.0%
! TGCTTTGTTGTAATCTATAG+AGG - chr3_4:58446422-58446441 Msa0509850:CDS 30.0%
!!! GTGTATTGATGGTTTTTTGT+TGG - chr3_4:58446456-58446475 Msa0509850:CDS 30.0%
!!! TGATGGTTTTTTGTTGGATT+AGG - chr3_4:58446462-58446481 Msa0509850:CDS 30.0%
!!! GATGGTTTTTTGTTGGATTA+GGG - chr3_4:58446463-58446482 Msa0509850:CDS 30.0%
!!! ATGGTTTTTTGTTGGATTAG+GGG - chr3_4:58446464-58446483 Msa0509850:CDS 30.0%
AGTGAACTAAATTTAGCTAG+AGG + chr3_4:58446551-58446570 None:intergenic 30.0%
! TCTAGCTAAATTTAGTTCAC+TGG - chr3_4:58446550-58446569 Msa0509850:five_prime_UTR 30.0%
ATCAATCCCACTAAAATCAA+TGG - chr3_4:58446630-58446649 Msa0509850:five_prime_UTR 30.0%
!!! CTCTTTCCATTGATTTTAGT+GGG + chr3_4:58446639-58446658 None:intergenic 30.0%
!!! ACTCTTTCCATTGATTTTAG+TGG + chr3_4:58446640-58446659 None:intergenic 30.0%
!! ATGGAAAGAGTACTTAAACT+AGG - chr3_4:58446649-58446668 Msa0509850:five_prime_UTR 30.0%
!!! TTTTAGGTTTATTGGGAGTT+GGG + chr3_4:58444489-58444508 None:intergenic 30.0%
TTGTAATGGTAACCTTTCTT+TGG + chr3_4:58444627-58444646 None:intergenic 30.0%
! CATATATTAGTTTCTGAGCT+GGG - chr3_4:58445804-58445823 Msa0509850:intron 30.0%
! TGTTATGGAAGAGTATGATT+CGG - chr3_4:58446325-58446344 Msa0509850:CDS 30.0%
CTATAGATTACAACAAAGCA+AGG + chr3_4:58446422-58446441 None:intergenic 30.0%
! TGCTTTGTTGTAATCTATAG+AGG - chr3_4:58446422-58446441 Msa0509850:CDS 30.0%
!!! GTGTATTGATGGTTTTTTGT+TGG - chr3_4:58446456-58446475 Msa0509850:CDS 30.0%
!!! TGATGGTTTTTTGTTGGATT+AGG - chr3_4:58446462-58446481 Msa0509850:CDS 30.0%
!!! GATGGTTTTTTGTTGGATTA+GGG - chr3_4:58446463-58446482 Msa0509850:CDS 30.0%
!!! ATGGTTTTTTGTTGGATTAG+GGG - chr3_4:58446464-58446483 Msa0509850:CDS 30.0%
AGTGAACTAAATTTAGCTAG+AGG + chr3_4:58446551-58446570 None:intergenic 30.0%
! TCTAGCTAAATTTAGTTCAC+TGG - chr3_4:58446550-58446569 Msa0509850:five_prime_UTR 30.0%
ATCAATCCCACTAAAATCAA+TGG - chr3_4:58446630-58446649 Msa0509850:five_prime_UTR 30.0%
!!! CTCTTTCCATTGATTTTAGT+GGG + chr3_4:58446639-58446658 None:intergenic 30.0%
!!! ACTCTTTCCATTGATTTTAG+TGG + chr3_4:58446640-58446659 None:intergenic 30.0%
!! ATGGAAAGAGTACTTAAACT+AGG - chr3_4:58446649-58446668 Msa0509850:five_prime_UTR 30.0%
!!! GTTTTAGGTTTATTGGGAGT+TGG + chr3_4:58444490-58444509 None:intergenic 35.0%
!!! TCTCTGTTTTTTGTGGCTTT+TGG + chr3_4:58444672-58444691 None:intergenic 35.0%
!!! GGTTGTTTCTCTGTTTTTTG+TGG + chr3_4:58444679-58444698 None:intergenic 35.0%
!!! TTCTTTGGCTGTTTTTGTTC+TGG + chr3_4:58444805-58444824 None:intergenic 35.0%
CATCTTCTTGCATTTCTTGT+TGG + chr3_4:58444875-58444894 None:intergenic 35.0%
TGCAAGAAGATGAAATGTTC+AGG - chr3_4:58444883-58444902 Msa0509850:CDS 35.0%
CACAAGAAAAAGGTTTCACT+TGG - chr3_4:58444991-58445010 Msa0509850:CDS 35.0%
AAGAAAAAGGTTTCACTTGG+TGG - chr3_4:58444994-58445013 Msa0509850:CDS 35.0%
! TGGTGGATGCAAAAACAATT+TGG - chr3_4:58445011-58445030 Msa0509850:CDS 35.0%
TTCATTCAAAGGAGCTTTCA+TGG + chr3_4:58445055-58445074 None:intergenic 35.0%
ACAATCAGGACAAGAACAAA+TGG + chr3_4:58445256-58445275 None:intergenic 35.0%
ATTTGTTCTTGTCCTGATTG+TGG - chr3_4:58445255-58445274 Msa0509850:CDS 35.0%
TTCATAATCTCACCACAATC+AGG + chr3_4:58445270-58445289 None:intergenic 35.0%
TATATGTATTGAAGACACCG+AGG + chr3_4:58445581-58445600 None:intergenic 35.0%
TATTCTCTCGACTAAGAGTT+AGG - chr3_4:58445638-58445657 Msa0509850:intron 35.0%
! TCTTGGATACATTAATGGAC+CGG - chr3_4:58445673-58445692 Msa0509850:intron 35.0%
! GCATATATTAGTTTCTGAGC+TGG - chr3_4:58445803-58445822 Msa0509850:intron 35.0%
ATGTTCTTGCTTGTATCTTC+TGG + chr3_4:58445831-58445850 None:intergenic 35.0%
! TTATGGTTTTCTGTGTGTTG+TGG + chr3_4:58445929-58445948 None:intergenic 35.0%
GTACTCTTCGAATTTGGTTA+TGG + chr3_4:58445946-58445965 None:intergenic 35.0%
GTTTGTTCTTTAGGCCTAAA+CGG - chr3_4:58446065-58446084 Msa0509850:CDS 35.0%
!! AAACACGGGTTTAAGTTGAA+TGG - chr3_4:58446140-58446159 Msa0509850:CDS 35.0%
!! TTTAAGTTGAATGGTAGCGA+TGG - chr3_4:58446149-58446168 Msa0509850:CDS 35.0%
!! TTAAGTTGAATGGTAGCGAT+GGG - chr3_4:58446150-58446169 Msa0509850:CDS 35.0%
AAGCAAGGTAAAATAGCTCT+AGG + chr3_4:58446407-58446426 None:intergenic 35.0%
! TTCTTTGCAATGTCACTTGA+TGG - chr3_4:58446494-58446513 Msa0509850:CDS 35.0%
!!! TTAGTTCACTGGCGTTTTTT+AGG - chr3_4:58446561-58446580 Msa0509850:five_prime_UTR 35.0%
!!! TAGTTCACTGGCGTTTTTTA+GGG - chr3_4:58446562-58446581 Msa0509850:five_prime_UTR 35.0%
! TACTTCCTAGCACTTTGTTT+AGG + chr3_4:58444438-58444457 None:intergenic 35.0%
!!! GTTTTAGGTTTATTGGGAGT+TGG + chr3_4:58444490-58444509 None:intergenic 35.0%
!!! TCTCTGTTTTTTGTGGCTTT+TGG + chr3_4:58444672-58444691 None:intergenic 35.0%
!!! GGTTGTTTCTCTGTTTTTTG+TGG + chr3_4:58444679-58444698 None:intergenic 35.0%
!!! TTCTTTGGCTGTTTTTGTTC+TGG + chr3_4:58444805-58444824 None:intergenic 35.0%
CATCTTCTTGCATTTCTTGT+TGG + chr3_4:58444875-58444894 None:intergenic 35.0%
TGCAAGAAGATGAAATGTTC+AGG - chr3_4:58444883-58444902 Msa0509850:CDS 35.0%
CACAAGAAAAAGGTTTCACT+TGG - chr3_4:58444991-58445010 Msa0509850:CDS 35.0%
AAGAAAAAGGTTTCACTTGG+TGG - chr3_4:58444994-58445013 Msa0509850:CDS 35.0%
! TGGTGGATGCAAAAACAATT+TGG - chr3_4:58445011-58445030 Msa0509850:CDS 35.0%
TTCATTCAAAGGAGCTTTCA+TGG + chr3_4:58445055-58445074 None:intergenic 35.0%
ACAATCAGGACAAGAACAAA+TGG + chr3_4:58445256-58445275 None:intergenic 35.0%
ATTTGTTCTTGTCCTGATTG+TGG - chr3_4:58445255-58445274 Msa0509850:CDS 35.0%
TTCATAATCTCACCACAATC+AGG + chr3_4:58445270-58445289 None:intergenic 35.0%
TATATGTATTGAAGACACCG+AGG + chr3_4:58445581-58445600 None:intergenic 35.0%
TATTCTCTCGACTAAGAGTT+AGG - chr3_4:58445638-58445657 Msa0509850:intron 35.0%
! TCTTGGATACATTAATGGAC+CGG - chr3_4:58445673-58445692 Msa0509850:intron 35.0%
! GCATATATTAGTTTCTGAGC+TGG - chr3_4:58445803-58445822 Msa0509850:intron 35.0%
ATGTTCTTGCTTGTATCTTC+TGG + chr3_4:58445831-58445850 None:intergenic 35.0%
! TTATGGTTTTCTGTGTGTTG+TGG + chr3_4:58445929-58445948 None:intergenic 35.0%
GTACTCTTCGAATTTGGTTA+TGG + chr3_4:58445946-58445965 None:intergenic 35.0%
GTTTGTTCTTTAGGCCTAAA+CGG - chr3_4:58446065-58446084 Msa0509850:CDS 35.0%
!! AAACACGGGTTTAAGTTGAA+TGG - chr3_4:58446140-58446159 Msa0509850:CDS 35.0%
!! TTTAAGTTGAATGGTAGCGA+TGG - chr3_4:58446149-58446168 Msa0509850:CDS 35.0%
!! TTAAGTTGAATGGTAGCGAT+GGG - chr3_4:58446150-58446169 Msa0509850:CDS 35.0%
AAGCAAGGTAAAATAGCTCT+AGG + chr3_4:58446407-58446426 None:intergenic 35.0%
! TTCTTTGCAATGTCACTTGA+TGG - chr3_4:58446494-58446513 Msa0509850:CDS 35.0%
!!! TTAGTTCACTGGCGTTTTTT+AGG - chr3_4:58446561-58446580 Msa0509850:five_prime_UTR 35.0%
!!! TAGTTCACTGGCGTTTTTTA+GGG - chr3_4:58446562-58446581 Msa0509850:five_prime_UTR 35.0%
!!! GTGGCTTTTGGTTTTCCTTT+TGG + chr3_4:58444660-58444679 None:intergenic 40.0%
AAACAGAGAAACAACCCTCT+TGG - chr3_4:58444683-58444702 Msa0509850:exon 40.0%
AACAGAGAAACAACCCTCTT+GGG - chr3_4:58444684-58444703 Msa0509850:exon 40.0%
AATCCAACAACAACAGCAGA+AGG - chr3_4:58444744-58444763 Msa0509850:CDS 40.0%
! TTTTGTTCTGGTACAGGTTG+AGG + chr3_4:58444793-58444812 None:intergenic 40.0%
CAACAACACTGGAATGACAA+TGG - chr3_4:58444915-58444934 Msa0509850:CDS 40.0%
!! GTTGCTGCTGTTGTTATTTC+TGG + chr3_4:58444946-58444965 None:intergenic 40.0%
GCTCCTTTGAATGAACTCAA+CGG - chr3_4:58445060-58445079 Msa0509850:CDS 40.0%
CTTCCGTTGAGTTCATTCAA+AGG + chr3_4:58445066-58445085 None:intergenic 40.0%
TGAAAGTGAAGACGAAGAAG+AGG + chr3_4:58445100-58445119 None:intergenic 40.0%
CTCTAGTGAAACCAAGAACA+GGG + chr3_4:58445215-58445234 None:intergenic 40.0%
TCTCTAGTGAAACCAAGAAC+AGG + chr3_4:58445216-58445235 None:intergenic 40.0%
TGACAGCTTGATGAAGTTCA+AGG + chr3_4:58445302-58445321 None:intergenic 40.0%
TTACGTCCTAACTCTCAGTT+GGG - chr3_4:58445544-58445563 Msa0509850:intron 40.0%
AATGTAACACAAGCGAGAAC+CGG + chr3_4:58445695-58445714 None:intergenic 40.0%
! TGTTGTGGACTTTAAGGATG+CGG + chr3_4:58445914-58445933 None:intergenic 40.0%
TCTGTGTGTTGTGGACTTTA+AGG + chr3_4:58445920-58445939 None:intergenic 40.0%
GTCTCTGTACTCTTCGAATT+TGG + chr3_4:58445952-58445971 None:intergenic 40.0%
GTGTGCGGCATAATAAAACA+CGG - chr3_4:58446125-58446144 Msa0509850:CDS 40.0%
TGTGCGGCATAATAAAACAC+GGG - chr3_4:58446126-58446145 Msa0509850:CDS 40.0%
! CGACAAAGCTAGTAGTGTTT+TGG - chr3_4:58446205-58446224 Msa0509850:CDS 40.0%
!! AGTAGTGTTTTGGACCTTTC+AGG - chr3_4:58446215-58446234 Msa0509850:CDS 40.0%
AGAGTGAAGAAGAACATGGA+AGG - chr3_4:58446293-58446312 Msa0509850:CDS 40.0%
GGAAGGTGGTAGTAATGTTA+TGG - chr3_4:58446310-58446329 Msa0509850:CDS 40.0%
TGCTGGGGCTTATTCTAATT+TGG - chr3_4:58446361-58446380 Msa0509850:CDS 40.0%
!!! AGTTCACTGGCGTTTTTTAG+GGG - chr3_4:58446563-58446582 Msa0509850:five_prime_UTR 40.0%
!!! GTGGCTTTTGGTTTTCCTTT+TGG + chr3_4:58444660-58444679 None:intergenic 40.0%
AAACAGAGAAACAACCCTCT+TGG - chr3_4:58444683-58444702 Msa0509850:exon 40.0%
AACAGAGAAACAACCCTCTT+GGG - chr3_4:58444684-58444703 Msa0509850:exon 40.0%
AATCCAACAACAACAGCAGA+AGG - chr3_4:58444744-58444763 Msa0509850:CDS 40.0%
! TTTTGTTCTGGTACAGGTTG+AGG + chr3_4:58444793-58444812 None:intergenic 40.0%
CAACAACACTGGAATGACAA+TGG - chr3_4:58444915-58444934 Msa0509850:CDS 40.0%
!! GTTGCTGCTGTTGTTATTTC+TGG + chr3_4:58444946-58444965 None:intergenic 40.0%
GCTCCTTTGAATGAACTCAA+CGG - chr3_4:58445060-58445079 Msa0509850:CDS 40.0%
CTTCCGTTGAGTTCATTCAA+AGG + chr3_4:58445066-58445085 None:intergenic 40.0%
TGAAAGTGAAGACGAAGAAG+AGG + chr3_4:58445100-58445119 None:intergenic 40.0%
CTCTAGTGAAACCAAGAACA+GGG + chr3_4:58445215-58445234 None:intergenic 40.0%
TCTCTAGTGAAACCAAGAAC+AGG + chr3_4:58445216-58445235 None:intergenic 40.0%
TGACAGCTTGATGAAGTTCA+AGG + chr3_4:58445302-58445321 None:intergenic 40.0%
TTACGTCCTAACTCTCAGTT+GGG - chr3_4:58445544-58445563 Msa0509850:intron 40.0%
AATGTAACACAAGCGAGAAC+CGG + chr3_4:58445695-58445714 None:intergenic 40.0%
! TGTTGTGGACTTTAAGGATG+CGG + chr3_4:58445914-58445933 None:intergenic 40.0%
TCTGTGTGTTGTGGACTTTA+AGG + chr3_4:58445920-58445939 None:intergenic 40.0%
GTCTCTGTACTCTTCGAATT+TGG + chr3_4:58445952-58445971 None:intergenic 40.0%
GTGTGCGGCATAATAAAACA+CGG - chr3_4:58446125-58446144 Msa0509850:CDS 40.0%
TGTGCGGCATAATAAAACAC+GGG - chr3_4:58446126-58446145 Msa0509850:CDS 40.0%
! CGACAAAGCTAGTAGTGTTT+TGG - chr3_4:58446205-58446224 Msa0509850:CDS 40.0%
!! AGTAGTGTTTTGGACCTTTC+AGG - chr3_4:58446215-58446234 Msa0509850:CDS 40.0%
AGAGTGAAGAAGAACATGGA+AGG - chr3_4:58446293-58446312 Msa0509850:CDS 40.0%
GGAAGGTGGTAGTAATGTTA+TGG - chr3_4:58446310-58446329 Msa0509850:CDS 40.0%
TGCTGGGGCTTATTCTAATT+TGG - chr3_4:58446361-58446380 Msa0509850:CDS 40.0%
!!! AGTTCACTGGCGTTTTTTAG+GGG - chr3_4:58446563-58446582 Msa0509850:five_prime_UTR 40.0%
CTTCCTTCTGCTGTTGTTGT+TGG + chr3_4:58444750-58444769 None:intergenic 45.0%
!!! GGCTGTTTTTGTTCTGGTAC+AGG + chr3_4:58444799-58444818 None:intergenic 45.0%
GCAGCATCTTCTAACTCTTC+TGG - chr3_4:58445120-58445139 Msa0509850:CDS 45.0%
!! TCTTCTAACTCTTCTGGAGC+TGG - chr3_4:58445126-58445145 Msa0509850:CDS 45.0%
!! TTCTGGAGCTGGTTCTTTCA+GGG - chr3_4:58445137-58445156 Msa0509850:CDS 45.0%
CTTTCAGGGGAATGCAGTTT+AGG - chr3_4:58445151-58445170 Msa0509850:CDS 45.0%
ATGCAGTTTAGGAGACTCTC+CGG - chr3_4:58445162-58445181 Msa0509850:CDS 45.0%
CATTCGACACTCGTAACAAC+CGG + chr3_4:58445184-58445203 None:intergenic 45.0%
ATGGTTGTTGACCCTGTTCT+TGG - chr3_4:58445201-58445220 Msa0509850:CDS 45.0%
CATCAAGCTGTCAAACATGC+AGG - chr3_4:58445309-58445328 Msa0509850:intron 45.0%
CAGCTCAGTCTCAGATACTT+TGG + chr3_4:58445396-58445415 None:intergenic 45.0%
GTTACGTCCTAACTCTCAGT+TGG - chr3_4:58445543-58445562 Msa0509850:intron 45.0%
TACGTCCTAACTCTCAGTTG+GGG - chr3_4:58445545-58445564 Msa0509850:intron 45.0%
TATCTCCCCAACTGAGAGTT+AGG + chr3_4:58445553-58445572 None:intergenic 45.0%
GTTGGGGAGATAATGAACCT+CGG - chr3_4:58445561-58445580 Msa0509850:intron 45.0%
GCTTCTTTAGCCAGCTTGAA+TGG + chr3_4:58445869-58445888 None:intergenic 45.0%
CAGACGGAAACGAGTTACTA+AGG - chr3_4:58446024-58446043 Msa0509850:CDS 45.0%
AGAGGTTTGAGGAACCGTTT+AGG + chr3_4:58446082-58446101 None:intergenic 45.0%
! TGTTGAGTTGCAGAGGTTTG+AGG + chr3_4:58446093-58446112 None:intergenic 45.0%
! ATTGGGATGTTGAGTTGCAG+AGG + chr3_4:58446100-58446119 None:intergenic 45.0%
ATATTGACGACAGCAACGAG+TGG - chr3_4:58446173-58446192 Msa0509850:CDS 45.0%
! TGAGAGTGGTGATGAGAAGA+GGG - chr3_4:58446241-58446260 Msa0509850:CDS 45.0%
TGATGAGAAGAGGGCAATGT+TGG - chr3_4:58446250-58446269 Msa0509850:CDS 45.0%
!! AGAGGGCAATGTTGGTTTGT+AGG - chr3_4:58446258-58446277 Msa0509850:CDS 45.0%
!! GAGGGCAATGTTGGTTTGTA+GGG - chr3_4:58446259-58446278 Msa0509850:CDS 45.0%
!! TTGGTTTGTAGGGTGATAGC+AGG - chr3_4:58446269-58446288 Msa0509850:CDS 45.0%
! TGGTTTGTAGGGTGATAGCA+GGG - chr3_4:58446270-58446289 Msa0509850:CDS 45.0%
AGGGAGAGTGAAGAAGAACA+TGG - chr3_4:58446289-58446308 Msa0509850:CDS 45.0%
GTGAAGAAGAACATGGAAGG+TGG - chr3_4:58446296-58446315 Msa0509850:CDS 45.0%
!! GAGTATGATTCGGTTAGTGC+TGG - chr3_4:58446335-58446354 Msa0509850:CDS 45.0%
CTTCCTTCTGCTGTTGTTGT+TGG + chr3_4:58444750-58444769 None:intergenic 45.0%
!!! GGCTGTTTTTGTTCTGGTAC+AGG + chr3_4:58444799-58444818 None:intergenic 45.0%
GCAGCATCTTCTAACTCTTC+TGG - chr3_4:58445120-58445139 Msa0509850:CDS 45.0%
!! TCTTCTAACTCTTCTGGAGC+TGG - chr3_4:58445126-58445145 Msa0509850:CDS 45.0%
!! TTCTGGAGCTGGTTCTTTCA+GGG - chr3_4:58445137-58445156 Msa0509850:CDS 45.0%
CTTTCAGGGGAATGCAGTTT+AGG - chr3_4:58445151-58445170 Msa0509850:CDS 45.0%
ATGCAGTTTAGGAGACTCTC+CGG - chr3_4:58445162-58445181 Msa0509850:CDS 45.0%
CATTCGACACTCGTAACAAC+CGG + chr3_4:58445184-58445203 None:intergenic 45.0%
ATGGTTGTTGACCCTGTTCT+TGG - chr3_4:58445201-58445220 Msa0509850:CDS 45.0%
CATCAAGCTGTCAAACATGC+AGG - chr3_4:58445309-58445328 Msa0509850:intron 45.0%
CAGCTCAGTCTCAGATACTT+TGG + chr3_4:58445396-58445415 None:intergenic 45.0%
GTTACGTCCTAACTCTCAGT+TGG - chr3_4:58445543-58445562 Msa0509850:intron 45.0%
TACGTCCTAACTCTCAGTTG+GGG - chr3_4:58445545-58445564 Msa0509850:intron 45.0%
TATCTCCCCAACTGAGAGTT+AGG + chr3_4:58445553-58445572 None:intergenic 45.0%
GTTGGGGAGATAATGAACCT+CGG - chr3_4:58445561-58445580 Msa0509850:intron 45.0%
GCTTCTTTAGCCAGCTTGAA+TGG + chr3_4:58445869-58445888 None:intergenic 45.0%
CAGACGGAAACGAGTTACTA+AGG - chr3_4:58446024-58446043 Msa0509850:CDS 45.0%
AGAGGTTTGAGGAACCGTTT+AGG + chr3_4:58446082-58446101 None:intergenic 45.0%
! TGTTGAGTTGCAGAGGTTTG+AGG + chr3_4:58446093-58446112 None:intergenic 45.0%
! ATTGGGATGTTGAGTTGCAG+AGG + chr3_4:58446100-58446119 None:intergenic 45.0%
ATATTGACGACAGCAACGAG+TGG - chr3_4:58446173-58446192 Msa0509850:CDS 45.0%
! TGAGAGTGGTGATGAGAAGA+GGG - chr3_4:58446241-58446260 Msa0509850:CDS 45.0%
TGATGAGAAGAGGGCAATGT+TGG - chr3_4:58446250-58446269 Msa0509850:CDS 45.0%
!! AGAGGGCAATGTTGGTTTGT+AGG - chr3_4:58446258-58446277 Msa0509850:CDS 45.0%
!! GAGGGCAATGTTGGTTTGTA+GGG - chr3_4:58446259-58446278 Msa0509850:CDS 45.0%
!! TTGGTTTGTAGGGTGATAGC+AGG - chr3_4:58446269-58446288 Msa0509850:CDS 45.0%
! TGGTTTGTAGGGTGATAGCA+GGG - chr3_4:58446270-58446289 Msa0509850:CDS 45.0%
AGGGAGAGTGAAGAAGAACA+TGG - chr3_4:58446289-58446308 Msa0509850:CDS 45.0%
GTGAAGAAGAACATGGAAGG+TGG - chr3_4:58446296-58446315 Msa0509850:CDS 45.0%
!! GAGTATGATTCGGTTAGTGC+TGG - chr3_4:58446335-58446354 Msa0509850:CDS 45.0%
GTGTGAGTGGAGGCTCTTTA+TGG + chr3_4:58444465-58444484 None:intergenic 50.0%
AGAGAAACAACCCTCTTGGG+CGG - chr3_4:58444687-58444706 Msa0509850:exon 50.0%
GGTTCACTCTGCAACAACAC+TGG - chr3_4:58444904-58444923 Msa0509850:CDS 50.0%
!! CTTCTGGAGCTGGTTCTTTC+AGG - chr3_4:58445136-58445155 Msa0509850:CDS 50.0%
! TCTGGAGCTGGTTCTTTCAG+GGG - chr3_4:58445138-58445157 Msa0509850:CDS 50.0%
!! CGGTTGTTACGAGTGTCGAA+TGG - chr3_4:58445182-58445201 Msa0509850:CDS 50.0%
!! ATGCGGTCGATTTTGCAGAC+TGG + chr3_4:58445897-58445916 None:intergenic 50.0%
ACATCCCAATGCAACGTGTG+CGG - chr3_4:58446110-58446129 Msa0509850:CDS 50.0%
TATGCCGCACACGTTGCATT+GGG + chr3_4:58446117-58446136 None:intergenic 50.0%
TTATGCCGCACACGTTGCAT+TGG + chr3_4:58446118-58446137 None:intergenic 50.0%
!! GACCTTTCAGGTTGTGAGAG+TGG - chr3_4:58446227-58446246 Msa0509850:CDS 50.0%
CACCACTCTCACAACCTGAA+AGG + chr3_4:58446232-58446251 None:intergenic 50.0%
! GTGAGAGTGGTGATGAGAAG+AGG - chr3_4:58446240-58446259 Msa0509850:CDS 50.0%
GTGTGAGTGGAGGCTCTTTA+TGG + chr3_4:58444465-58444484 None:intergenic 50.0%
AGAGAAACAACCCTCTTGGG+CGG - chr3_4:58444687-58444706 Msa0509850:exon 50.0%
GGTTCACTCTGCAACAACAC+TGG - chr3_4:58444904-58444923 Msa0509850:CDS 50.0%
!! CTTCTGGAGCTGGTTCTTTC+AGG - chr3_4:58445136-58445155 Msa0509850:CDS 50.0%
! TCTGGAGCTGGTTCTTTCAG+GGG - chr3_4:58445138-58445157 Msa0509850:CDS 50.0%
!! CGGTTGTTACGAGTGTCGAA+TGG - chr3_4:58445182-58445201 Msa0509850:CDS 50.0%
!! ATGCGGTCGATTTTGCAGAC+TGG + chr3_4:58445897-58445916 None:intergenic 50.0%
ACATCCCAATGCAACGTGTG+CGG - chr3_4:58446110-58446129 Msa0509850:CDS 50.0%
TATGCCGCACACGTTGCATT+GGG + chr3_4:58446117-58446136 None:intergenic 50.0%
TTATGCCGCACACGTTGCAT+TGG + chr3_4:58446118-58446137 None:intergenic 50.0%
!! GACCTTTCAGGTTGTGAGAG+TGG - chr3_4:58446227-58446246 Msa0509850:CDS 50.0%
CACCACTCTCACAACCTGAA+AGG + chr3_4:58446232-58446251 None:intergenic 50.0%
! GTGAGAGTGGTGATGAGAAG+AGG - chr3_4:58446240-58446259 Msa0509850:CDS 50.0%
! TTGGGAGTTGGGAGTGTGAG+TGG + chr3_4:58444478-58444497 None:intergenic 55.0%
! GGCGGTGGTAAGAGGCTTTT+TGG - chr3_4:58444705-58444724 Msa0509850:CDS 55.0%
TTTCCGTCTGCTATGCAGCG+GGG + chr3_4:58446014-58446033 None:intergenic 55.0%
GTTTCCGTCTGCTATGCAGC+GGG + chr3_4:58446015-58446034 None:intergenic 55.0%
CGTTTCCGTCTGCTATGCAG+CGG + chr3_4:58446016-58446035 None:intergenic 55.0%
!! TCGGTTAGTGCTGGTGATGC+TGG - chr3_4:58446344-58446363 Msa0509850:CDS 55.0%
!! CGGTTAGTGCTGGTGATGCT+GGG - chr3_4:58446345-58446364 Msa0509850:CDS 55.0%
!! GGTTAGTGCTGGTGATGCTG+GGG - chr3_4:58446346-58446365 Msa0509850:CDS 55.0%
! TTGGGAGTTGGGAGTGTGAG+TGG + chr3_4:58444478-58444497 None:intergenic 55.0%
! GGCGGTGGTAAGAGGCTTTT+TGG - chr3_4:58444705-58444724 Msa0509850:CDS 55.0%
TTTCCGTCTGCTATGCAGCG+GGG + chr3_4:58446014-58446033 None:intergenic 55.0%
GTTTCCGTCTGCTATGCAGC+GGG + chr3_4:58446015-58446034 None:intergenic 55.0%
CGTTTCCGTCTGCTATGCAG+CGG + chr3_4:58446016-58446035 None:intergenic 55.0%
!! TCGGTTAGTGCTGGTGATGC+TGG - chr3_4:58446344-58446363 Msa0509850:CDS 55.0%
!! CGGTTAGTGCTGGTGATGCT+GGG - chr3_4:58446345-58446364 Msa0509850:CDS 55.0%
!! GGTTAGTGCTGGTGATGCTG+GGG - chr3_4:58446346-58446365 Msa0509850:CDS 55.0%
! GGAGTTGGGAGTGTGAGTGG+AGG + chr3_4:58444475-58444494 None:intergenic 60.0%
GAAACAACCCTCTTGGGCGG+TGG - chr3_4:58444690-58444709 Msa0509850:CDS 60.0%
CCTCTTACCACCGCCCAAGA+GGG + chr3_4:58444700-58444719 None:intergenic 60.0%
TTCCGTCTGCTATGCAGCGG+GGG + chr3_4:58446013-58446032 None:intergenic 60.0%
! GGAGTTGGGAGTGTGAGTGG+AGG + chr3_4:58444475-58444494 None:intergenic 60.0%
GAAACAACCCTCTTGGGCGG+TGG - chr3_4:58444690-58444709 Msa0509850:CDS 60.0%
CCTCTTACCACCGCCCAAGA+GGG + chr3_4:58444700-58444719 None:intergenic 60.0%
TTCCGTCTGCTATGCAGCGG+GGG + chr3_4:58446013-58446032 None:intergenic 60.0%
CCCTCTTGGGCGGTGGTAAG+AGG - chr3_4:58444697-58444716 Msa0509850:CDS 65.0%
GCCTCTTACCACCGCCCAAG+AGG + chr3_4:58444701-58444720 None:intergenic 65.0%
CACCCCCGCTGCATAGCAGA+CGG - chr3_4:58446008-58446027 Msa0509850:CDS 65.0%
CCCTCTTGGGCGGTGGTAAG+AGG - chr3_4:58444697-58444716 Msa0509850:CDS 65.0%
GCCTCTTACCACCGCCCAAG+AGG + chr3_4:58444701-58444720 None:intergenic 65.0%
CACCCCCGCTGCATAGCAGA+CGG - chr3_4:58446008-58446027 Msa0509850:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58444437 58446703 58444437 ID=Msa0509850;Name=Msa0509850
chr3_4 mRNA 58444437 58446703 58444437 ID=Msa0509850-mRNA-1;Parent=Msa0509850;Name=Msa0509850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170|1|1|1|1|1|2|252|453
chr3_4 exon 58444437 58445326 58444437 ID=Msa0509850-mRNA-1:exon:13539;Parent=Msa0509850-mRNA-1
chr3_4 exon 58445810 58446703 58445810 ID=Msa0509850-mRNA-1:exon:13538;Parent=Msa0509850-mRNA-1
chr3_4 five_prime_UTR 58446534 58446703 58446534 ID=Msa0509850-mRNA-1:five_prime_utr;Parent=Msa0509850-mRNA-1
chr3_4 CDS 58445810 58446533 58445810 ID=Msa0509850-mRNA-1:cds;Parent=Msa0509850-mRNA-1
chr3_4 CDS 58444689 58445326 58444689 ID=Msa0509850-mRNA-1:cds;Parent=Msa0509850-mRNA-1
chr3_4 three_prime_UTR 58444437 58444688 58444437 ID=Msa0509850-mRNA-1:three_prime_utr;Parent=Msa0509850-mRNA-1
Gene Sequence

>Msa0509850

ATGAGCAAATCAAAAATCCAAAGAAAGGTTACCATTACAAATCATATAAGCCAAAAGGAAAACCAAAAGCCACAAAAAACAGAGAAACAACCCTCTTGGGCGGTGGTAAGAGGCTTTTTGGCTTGTAAGAATGTTCAAATCCAACAACAACAGCAGAAGGAAGCAAAACAGCTACAACAACAACCTCAACCTGTACCAGAACAAAAACAGCCAAAGAAAAAACAAGAACAAAGGAAGCTGAAAGAAGAAAGAGTCTCAGAAGATACCAACAAGAAATGCAAGAAGATGAAATGTTCAGGTTCACTCTGCAACAACACTGGAATGACAATGGCAAAACCAGAAATAACAACAGCAGCAACAACAACAAGAACAACTACAGATATTCACAAGAAAAAGGTTTCACTTGGTGGATGCAAAAACAATTTGGCTTCTAGTTCAAGCAGATCCATGAAAGCTCCTTTGAATGAACTCAACGGAAGAACTGTGTCAGCCTCTTCTTCGTCTTCACTTTCAGCAGCATCTTCTAACTCTTCTGGAGCTGGTTCTTTCAGGGGAATGCAGTTTAGGAGACTCTCCGGTTGTTACGAGTGTCGAATGGTTGTTGACCCTGTTCTTGGTTTCACTAGAGACTCTTCTCTAAGAAGCTCCATTTGTTCTTGTCCTGATTGTGGTGAGATTATGAAAACTGAAAGCCTTGAACTTCATCAAGCTGTCAAACATGCAGTTTCTGAGCTGGGTCCAGAAGATACAAGCAAGAACATAGTTGAAATAATATTCCATTCAAGCTGGCTAAAGAAGCAATCTCCAGTCTGCAAAATCGACCGCATCCTTAAAGTCCACAACACACAGAAAACCATAACCAAATTCGAAGAGTACAGAGACTCAATCAAAGCAAAAGCAACAAATCTCTCAAAAAAACACCCCCGCTGCATAGCAGACGGAAACGAGTTACTAAGGTTTCACTGCACAACATTTGTTTGTTCTTTAGGCCTAAACGGTTCCTCAAACCTCTGCAACTCAACATCCCAATGCAACGTGTGCGGCATAATAAAACACGGGTTTAAGTTGAATGGTAGCGATGGGATATTGACGACAGCAACGAGTGGTAAAGCACACGACAAAGCTAGTAGTGTTTTGGACCTTTCAGGTTGTGAGAGTGGTGATGAGAAGAGGGCAATGTTGGTTTGTAGGGTGATAGCAGGGAGAGTGAAGAAGAACATGGAAGGTGGTAGTAATGTTATGGAAGAGTATGATTCGGTTAGTGCTGGTGATGCTGGGGCTTATTCTAATTTGGATGAGTTGTATGTGAATAATCCTAGAGCTATTTTACCTTGCTTTGTTGTAATCTATAGAGGCTTTTGA
Protein sequence

>Msa0509850

MSKSKIQRKVTITNHISQKENQKPQKTEKQPSWAVVRGFLACKNVQIQQQQQKEAKQLQQQPQPVPEQKQPKKKQEQRKLKEERVSEDTNKKCKKMKCSGSLCNNTGMTMAKPEITTAATTTRTTTDIHKKKVSLGGCKNNLASSSSRSMKAPLNELNGRTVSASSSSSLSAASSNSSGAGSFRGMQFRRLSGCYECRMVVDPVLGFTRDSSLRSSICSCPDCGEIMKTESLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQKTITKFEEYRDSIKAKATNLSKKHPRCIADGNELLRFHCTTFVCSLGLNGSSNLCNSTSQCNVCGIIKHGFKLNGSDGILTTATSGKAHDKASSVLDLSGCESGDEKRAMLVCRVIAGRVKKNMEGGSNVMEEYDSVSAGDAGAYSNLDELYVNNPRAILPCFVVIYRGF*