AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509830 MtrunA17_Chr3g0114991 98.234 453 7 1 1 453 1 452 0.0 917
Msa0509830 MtrunA17_Chr1g0156521 56.721 305 105 7 157 450 111 399 1.80e-113 339
Msa0509830 MtrunA17_Chr4g0042091 51.653 242 103 7 215 449 200 434 4.79e-72 234
Msa0509830 MtrunA17_Chr3g0104431 49.798 247 109 10 213 450 147 387 2.69e-65 214
Msa0509830 MtrunA17_Chr2g0280501 41.077 297 142 12 177 451 91 376 7.31e-49 171
Msa0509830 MtrunA17_Chr5g0399041 38.426 216 97 9 241 451 105 289 3.70e-35 132
Msa0509830 MtrunA17_Chr8g0376191 42.529 174 85 6 283 451 2 165 5.04e-32 120
Msa0509830 MtrunA17_Chr4g0056461 36.019 211 98 6 244 451 98 274 3.20e-31 121
Msa0509830 MtrunA17_Chr5g0445321 31.122 196 120 5 257 450 1 183 7.62e-29 112
Msa0509830 MtrunA17_Chr2g0280521 50.909 110 53 1 248 357 10 118 1.04e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509830 AT1G75710.1 54.515 299 92 8 183 451 174 458 1.80e-99 306
Msa0509830 AT5G54630.1 49.231 260 112 8 205 449 215 469 3.58e-72 235
Msa0509830 AT4G27240.1 51.046 239 102 7 219 449 197 428 1.63e-70 230
Msa0509830 AT2G29660.1 47.244 254 107 11 217 450 125 371 2.84e-57 193
Msa0509830 AT4G27240.2 49.528 212 93 6 219 422 197 402 4.17e-57 194
Msa0509830 AT1G11490.2 38.247 251 127 9 217 451 126 364 4.44e-44 158
Msa0509830 AT1G11490.1 38.247 251 127 9 217 451 126 364 4.44e-44 158
Msa0509830 AT1G62520.1 37.850 214 95 9 242 451 100 279 2.44e-31 122
Msa0509830 AT4G22560.1 34.419 215 94 7 241 451 92 263 3.27e-29 115
Msa0509830 AT4G12450.1 34.071 226 99 8 236 451 91 276 2.62e-26 108

Find 104 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGGAGCTGGTTCTTTC+AGG 0.067042 3_4:-58426552 Msa0509830:CDS
GTTGCTGCTGTTGTTATTTC+TGG 0.093690 3_4:+58426745 None:intergenic
TGCTGGGGCTTATTCTAATT+TGG 0.219703 3_4:-58425327 Msa0509830:CDS
ACAACATTTGTTTGTTCTTT+AGG 0.234916 3_4:-58425632 Msa0509830:CDS
CTTCCTTCTGCTGTTGTTGT+TGG 0.236133 3_4:+58426941 None:intergenic
TCTGTGTGTTGTGGACTTTA+AGG 0.242925 3_4:+58425771 None:intergenic
CATCTTCTTGCATTTCTTGT+TGG 0.257607 3_4:+58426816 None:intergenic
TACAGATATTCACAAGAAAA+AGG 0.264395 3_4:-58426707 Msa0509830:CDS
GTGTGAGTGGAGGCTCTTTA+TGG 0.265286 3_4:+58427227 None:intergenic
GTCTCTGTACTCTTCGAATT+TGG 0.269606 3_4:+58425739 None:intergenic
ATGTTCTTGCTTGTATCTTC+TGG 0.271296 3_4:+58425860 None:intergenic
GCAGCATCTTCTAACTCTTC+TGG 0.278189 3_4:-58426568 Msa0509830:CDS
TTGTAATGGTAACCTTTCTT+TGG 0.293073 3_4:+58427064 None:intergenic
CTTTCAGGGGAATGCAGTTT+AGG 0.302208 3_4:-58426537 Msa0509830:CDS
GTACTCTTCGAATTTGGTTA+TGG 0.302636 3_4:+58425745 None:intergenic
TCGGTTAGTGCTGGTGATGC+TGG 0.309847 3_4:-58425344 Msa0509830:CDS
ATGGTTGTTGACCCTGTTCT+TGG 0.318988 3_4:-58426487 Msa0509830:CDS
CGACAAAGCTAGTAGTGTTT+TGG 0.320624 3_4:-58425483 Msa0509830:CDS
TTCATTCAAAGGAGCTTTCA+TGG 0.322337 3_4:+58426636 None:intergenic
AGGATTGTATATGTATATTA+AGG 0.348260 3_4:-58425019 Msa0509830:three_prime_UTR
AGAGGGCAATGTTGGTTTGT+AGG 0.352259 3_4:-58425430 Msa0509830:CDS
TATAGTAGAAAACTAGAATA+TGG 0.357201 3_4:+58427164 None:intergenic
TTCTTTGCAATGTCACTTGA+TGG 0.364460 3_4:-58425194 Msa0509830:three_prime_UTR
TTCTGGAGCTGGTTCTTTCA+GGG 0.364982 3_4:-58426551 Msa0509830:CDS
TGCTTTGTTGTAATCTATAG+AGG 0.380068 3_4:-58425266 Msa0509830:CDS
TGCAAGAAGATGAAATGTTC+AGG 0.398226 3_4:-58426805 Msa0509830:CDS
CGGTTAGTGCTGGTGATGCT+GGG 0.399016 3_4:-58425343 Msa0509830:CDS
GGAAGGTGGTAGTAATGTTA+TGG 0.410378 3_4:-58425378 Msa0509830:CDS
GAGGGCAATGTTGGTTTGTA+GGG 0.412856 3_4:-58425429 Msa0509830:CDS
CCCTCTTGGGCGGTGGTAAG+AGG 0.414370 3_4:-58426991 Msa0509830:CDS
TTCATAATCTCACCACAATC+AGG 0.424627 3_4:+58426421 None:intergenic
TGACAGCTTGATGAAGTTCA+AGG 0.429196 3_4:+58426389 None:intergenic
GCTTCTTTAGCCAGCTTGAA+TGG 0.430042 3_4:+58425822 None:intergenic
TTGGCTTATATGATTTGTAA+TGG 0.438159 3_4:+58427050 None:intergenic
TTGGTTTGTAGGGTGATAGC+AGG 0.448552 3_4:-58425419 Msa0509830:CDS
TTGGGAGTTGGGAGTGTGAG+TGG 0.450431 3_4:+58427214 None:intergenic
ATCAATCCCACTAAAATCAA+TGG 0.452319 3_4:-58425058 Msa0509830:three_prime_UTR
TATGCCGCACACGTTGCATT+GGG 0.458299 3_4:+58425574 None:intergenic
TCTCTAGTGAAACCAAGAAC+AGG 0.464340 3_4:+58426475 None:intergenic
AACAGAGAAACAACCCTCTT+GGG 0.466270 3_4:-58427004 Msa0509830:CDS
CATATATTAGTTTCTGAGCT+GGG 0.466347 3_4:-58425884 Msa0509830:intron
TCTAGCTAAATTTAGTTCAC+TGG 0.466837 3_4:-58425138 Msa0509830:three_prime_UTR
AGAGGTTTGAGGAACCGTTT+AGG 0.468308 3_4:+58425609 None:intergenic
GTTTCCGTCTGCTATGCAGC+GGG 0.469149 3_4:+58425676 None:intergenic
GCATATATTAGTTTCTGAGC+TGG 0.470447 3_4:-58425885 Msa0509830:intron
TCTTCTAACTCTTCTGGAGC+TGG 0.470479 3_4:-58426562 Msa0509830:CDS
GTTTGTTCTTTAGGCCTAAA+CGG 0.471880 3_4:-58425623 Msa0509830:CDS
AAACAGAGAAACAACCCTCT+TGG 0.479509 3_4:-58427005 Msa0509830:CDS
AACTGCATTTATGTATGTAT+TGG 0.481938 3_4:-58425093 Msa0509830:three_prime_UTR
ACAATCAGGACAAGAACAAA+TGG 0.483435 3_4:+58426435 None:intergenic
TGTTGAGTTGCAGAGGTTTG+AGG 0.485252 3_4:+58425598 None:intergenic
CAGACGGAAACGAGTTACTA+AGG 0.485531 3_4:-58425664 Msa0509830:CDS
TACAAATCATATAAGCCAAA+AGG 0.487150 3_4:-58427046 Msa0509830:CDS
ATTTGTTCTTGTCCTGATTG+TGG 0.489818 3_4:-58426433 Msa0509830:CDS
TTATGCCGCACACGTTGCAT+TGG 0.500527 3_4:+58425573 None:intergenic
AAACACGGGTTTAAGTTGAA+TGG 0.502774 3_4:-58425548 Msa0509830:CDS
TGATGAGAAGAGGGCAATGT+TGG 0.513521 3_4:-58425438 Msa0509830:CDS
CATTCGACACTCGTAACAAC+CGG 0.518656 3_4:+58426507 None:intergenic
TCTGGAGCTGGTTCTTTCAG+GGG 0.520859 3_4:-58426550 Msa0509830:CDS
GACCTTTCAGGTTGTGAGAG+TGG 0.524110 3_4:-58425461 Msa0509830:CDS
AAATAATATTCCATTCAAGC+TGG 0.528424 3_4:-58425832 Msa0509830:CDS
AAGCAAGGTAAAATAGCTCT+AGG 0.537013 3_4:+58425284 None:intergenic
TGTTATGGAAGAGTATGATT+CGG 0.537909 3_4:-58425363 Msa0509830:CDS
CGGTTGTTACGAGTGTCGAA+TGG 0.544614 3_4:-58426506 Msa0509830:CDS
TGAGAGTGGTGATGAGAAGA+GGG 0.545449 3_4:-58425447 Msa0509830:CDS
ATGCAGTTTAGGAGACTCTC+CGG 0.548192 3_4:-58426526 Msa0509830:CDS
CTTCCGTTGAGTTCATTCAA+AGG 0.552983 3_4:+58426625 None:intergenic
GAGTATGATTCGGTTAGTGC+TGG 0.553594 3_4:-58425353 Msa0509830:CDS
GTACTAATAAACAAAGTGCT+AGG 0.556960 3_4:-58427259 None:intergenic
GTGAAGAAGAACATGGAAGG+TGG 0.558857 3_4:-58425392 Msa0509830:CDS
GGTTCACTCTGCAACAACAC+TGG 0.561299 3_4:-58426784 Msa0509830:CDS
GAAACAACCCTCTTGGGCGG+TGG 0.562290 3_4:-58426998 Msa0509830:CDS
GTGAGAGTGGTGATGAGAAG+AGG 0.564974 3_4:-58425448 Msa0509830:CDS
TAGAAAACTAGAATATGGTA+TGG 0.565951 3_4:+58427169 None:intergenic
TTAAGTTGAATGGTAGCGAT+GGG 0.566451 3_4:-58425538 Msa0509830:CDS
AAAATGGTGTTTCTATAACA+TGG 0.568328 3_4:+58427112 None:intergenic
CATCAAGCTGTCAAACATGC+AGG 0.569618 3_4:-58426379 Msa0509830:intron
TGAAAGTGAAGACGAAGAAG+AGG 0.573976 3_4:+58426591 None:intergenic
TTTAAGTTGAATGGTAGCGA+TGG 0.575452 3_4:-58425539 Msa0509830:CDS
AGAGTGAAGAAGAACATGGA+AGG 0.577959 3_4:-58425395 Msa0509830:CDS
GCCTCTTACCACCGCCCAAG+AGG 0.582339 3_4:+58426990 None:intergenic
ATGGAAAGAGTACTTAAACT+AGG 0.583068 3_4:-58425039 Msa0509830:three_prime_UTR
CACCACTCTCACAACCTGAA+AGG 0.586123 3_4:+58425459 None:intergenic
TTCCGTCTGCTATGCAGCGG+GGG 0.586954 3_4:+58425678 None:intergenic
TGGTTTGTAGGGTGATAGCA+GGG 0.589739 3_4:-58425418 Msa0509830:CDS
TGTTGTGGACTTTAAGGATG+CGG 0.593997 3_4:+58425777 None:intergenic
CTATAGATTACAACAAAGCA+AGG 0.600839 3_4:+58425269 None:intergenic
ATTGGGATGTTGAGTTGCAG+AGG 0.601738 3_4:+58425591 None:intergenic
AATCCAACAACAACAGCAGA+AGG 0.606544 3_4:-58426944 Msa0509830:CDS
CCTCTTACCACCGCCCAAGA+GGG 0.611776 3_4:+58426991 None:intergenic
GGAGTTGGGAGTGTGAGTGG+AGG 0.612055 3_4:+58427217 None:intergenic
CGTTTCCGTCTGCTATGCAG+CGG 0.617775 3_4:+58425675 None:intergenic
CAACAACACTGGAATGACAA+TGG 0.620216 3_4:-58426773 Msa0509830:CDS
CTCTAGTGAAACCAAGAACA+GGG 0.633221 3_4:+58426476 None:intergenic
AGTGAACTAAATTTAGCTAG+AGG 0.643108 3_4:+58425140 None:intergenic
TTTCCGTCTGCTATGCAGCG+GGG 0.644816 3_4:+58425677 None:intergenic
ACATCCCAATGCAACGTGTG+CGG 0.650064 3_4:-58425578 Msa0509830:CDS
GTGTGCGGCATAATAAAACA+CGG 0.650403 3_4:-58425563 Msa0509830:CDS
GGTTAGTGCTGGTGATGCTG+GGG 0.653244 3_4:-58425342 Msa0509830:CDS
GCTCCTTTGAATGAACTCAA+CGG 0.658606 3_4:-58426628 Msa0509830:CDS
AGAGAAACAACCCTCTTGGG+CGG 0.687568 3_4:-58427001 Msa0509830:CDS
TGTGCGGCATAATAAAACAC+GGG 0.688551 3_4:-58425562 Msa0509830:CDS
AGGGAGAGTGAAGAAGAACA+TGG 0.698562 3_4:-58425399 Msa0509830:CDS
ATATTGACGACAGCAACGAG+TGG 0.716849 3_4:-58425515 Msa0509830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGAAACTAAAGATTAT+AGG + chr3_4:58425928-58425947 None:intergenic 15.0%
!! TTATTGAAACTAAAGATTAT+AGG + chr3_4:58425928-58425947 None:intergenic 15.0%
!!! ATTCTTGTTTTAGGTTTATT+GGG + chr3_4:58425066-58425085 None:intergenic 20.0%
!! TATAGTAGAAAACTAGAATA+TGG + chr3_4:58425098-58425117 None:intergenic 20.0%
!! TTGCTCATTGTAAAAAAAAA+TGG + chr3_4:58425166-58425185 None:intergenic 20.0%
!! CTTAAGAAATTAGTTACATT+TGG + chr3_4:58426027-58426046 None:intergenic 20.0%
!!! TAGTCTTAAGTTAAGATTAT+CGG + chr3_4:58426075-58426094 None:intergenic 20.0%
!! TAATCTTAACTTAAGACTAT+CGG - chr3_4:58426076-58426095 Msa0509830:intron 20.0%
!! TATATTCAATTATGGTACAT+TGG + chr3_4:58426314-58426333 None:intergenic 20.0%
!! CACTTAAGTATATTCAATTA+TGG + chr3_4:58426322-58426341 None:intergenic 20.0%
!! AGGATTGTATATGTATATTA+AGG - chr3_4:58427240-58427259 Msa0509830:five_prime_UTR 20.0%
!!! ATTCTTGTTTTAGGTTTATT+GGG + chr3_4:58425066-58425085 None:intergenic 20.0%
!! TATAGTAGAAAACTAGAATA+TGG + chr3_4:58425098-58425117 None:intergenic 20.0%
!! TTGCTCATTGTAAAAAAAAA+TGG + chr3_4:58425166-58425185 None:intergenic 20.0%
!! CTTAAGAAATTAGTTACATT+TGG + chr3_4:58426027-58426046 None:intergenic 20.0%
!!! TAGTCTTAAGTTAAGATTAT+CGG + chr3_4:58426075-58426094 None:intergenic 20.0%
!! TAATCTTAACTTAAGACTAT+CGG - chr3_4:58426076-58426095 Msa0509830:intron 20.0%
!! TATATTCAATTATGGTACAT+TGG + chr3_4:58426314-58426333 None:intergenic 20.0%
!! CACTTAAGTATATTCAATTA+TGG + chr3_4:58426322-58426341 None:intergenic 20.0%
!! AGGATTGTATATGTATATTA+AGG - chr3_4:58427240-58427259 Msa0509830:five_prime_UTR 20.0%
!!! GATTCTTGTTTTAGGTTTAT+TGG + chr3_4:58425067-58425086 None:intergenic 25.0%
!!! TATGGTATGATTCTTGTTTT+AGG + chr3_4:58425075-58425094 None:intergenic 25.0%
! TAGAAAACTAGAATATGGTA+TGG + chr3_4:58425093-58425112 None:intergenic 25.0%
!! AAAATGGTGTTTCTATAACA+TGG + chr3_4:58425150-58425169 None:intergenic 25.0%
! CAAATCAAAAATCCAAAGAA+AGG - chr3_4:58425183-58425202 Msa0509830:three_prime_UTR 25.0%
!! TTGGCTTATATGATTTGTAA+TGG + chr3_4:58425212-58425231 None:intergenic 25.0%
! TACAAATCATATAAGCCAAA+AGG - chr3_4:58425213-58425232 Msa0509830:three_prime_UTR 25.0%
!!! CTTTGTTCTTGTTTTTTCTT+TGG + chr3_4:58425391-58425410 None:intergenic 25.0%
! CAAAGAAAAAACAAGAACAA+AGG - chr3_4:58425389-58425408 Msa0509830:CDS 25.0%
! TACAGATATTCACAAGAAAA+AGG - chr3_4:58425552-58425571 Msa0509830:CDS 25.0%
! TTGAAACTAAAGATTATAGG+TGG + chr3_4:58425925-58425944 None:intergenic 25.0%
! TAATAAATGTCATTATCTCG+AGG + chr3_4:58425999-58426018 None:intergenic 25.0%
!! GATACTAGTATCCATTTTAA+TGG - chr3_4:58426046-58426065 Msa0509830:intron 25.0%
! ATTATCGGTATCCATTAAAA+TGG + chr3_4:58426060-58426079 None:intergenic 25.0%
!! TTAGGACATAATTGATTTCT+TGG - chr3_4:58426227-58426246 Msa0509830:intron 25.0%
! TGATTTCTTGGATACATTAA+TGG - chr3_4:58426239-58426258 Msa0509830:intron 25.0%
! CAGAAACTAATATATGCATA+AGG + chr3_4:58426371-58426390 None:intergenic 25.0%
! AAATAATATTCCATTCAAGC+TGG - chr3_4:58426427-58426446 Msa0509830:CDS 25.0%
! ACAACATTTGTTTGTTCTTT+AGG - chr3_4:58426627-58426646 Msa0509830:CDS 25.0%
!!! CTTTTGATAATGTGTATTGA+TGG - chr3_4:58427016-58427035 Msa0509830:CDS 25.0%
! AACTGCATTTATGTATGTAT+TGG - chr3_4:58427166-58427185 Msa0509830:five_prime_UTR 25.0%
!!! GATTCTTGTTTTAGGTTTAT+TGG + chr3_4:58425067-58425086 None:intergenic 25.0%
!!! TATGGTATGATTCTTGTTTT+AGG + chr3_4:58425075-58425094 None:intergenic 25.0%
! TAGAAAACTAGAATATGGTA+TGG + chr3_4:58425093-58425112 None:intergenic 25.0%
!! AAAATGGTGTTTCTATAACA+TGG + chr3_4:58425150-58425169 None:intergenic 25.0%
! CAAATCAAAAATCCAAAGAA+AGG - chr3_4:58425183-58425202 Msa0509830:three_prime_UTR 25.0%
!! TTGGCTTATATGATTTGTAA+TGG + chr3_4:58425212-58425231 None:intergenic 25.0%
! TACAAATCATATAAGCCAAA+AGG - chr3_4:58425213-58425232 Msa0509830:three_prime_UTR 25.0%
!!! CTTTGTTCTTGTTTTTTCTT+TGG + chr3_4:58425391-58425410 None:intergenic 25.0%
! CAAAGAAAAAACAAGAACAA+AGG - chr3_4:58425389-58425408 Msa0509830:CDS 25.0%
! TACAGATATTCACAAGAAAA+AGG - chr3_4:58425552-58425571 Msa0509830:CDS 25.0%
! TTGAAACTAAAGATTATAGG+TGG + chr3_4:58425925-58425944 None:intergenic 25.0%
! TAATAAATGTCATTATCTCG+AGG + chr3_4:58425999-58426018 None:intergenic 25.0%
!! GATACTAGTATCCATTTTAA+TGG - chr3_4:58426046-58426065 Msa0509830:intron 25.0%
! ATTATCGGTATCCATTAAAA+TGG + chr3_4:58426060-58426079 None:intergenic 25.0%
!! TTAGGACATAATTGATTTCT+TGG - chr3_4:58426227-58426246 Msa0509830:intron 25.0%
! TGATTTCTTGGATACATTAA+TGG - chr3_4:58426239-58426258 Msa0509830:intron 25.0%
! CAGAAACTAATATATGCATA+AGG + chr3_4:58426371-58426390 None:intergenic 25.0%
! AAATAATATTCCATTCAAGC+TGG - chr3_4:58426427-58426446 Msa0509830:CDS 25.0%
! ACAACATTTGTTTGTTCTTT+AGG - chr3_4:58426627-58426646 Msa0509830:CDS 25.0%
!!! CTTTTGATAATGTGTATTGA+TGG - chr3_4:58427016-58427035 Msa0509830:CDS 25.0%
! AACTGCATTTATGTATGTAT+TGG - chr3_4:58427166-58427185 Msa0509830:five_prime_UTR 25.0%
!!! TTTTAGGTTTATTGGGAGTT+GGG + chr3_4:58425059-58425078 None:intergenic 30.0%
TTGTAATGGTAACCTTTCTT+TGG + chr3_4:58425198-58425217 None:intergenic 30.0%
! CATATATTAGTTTCTGAGCT+GGG - chr3_4:58426375-58426394 Msa0509830:intron 30.0%
! TGTTATGGAAGAGTATGATT+CGG - chr3_4:58426896-58426915 Msa0509830:CDS 30.0%
CTATAGATTACAACAAAGCA+AGG + chr3_4:58426993-58427012 None:intergenic 30.0%
! TGCTTTGTTGTAATCTATAG+AGG - chr3_4:58426993-58427012 Msa0509830:CDS 30.0%
!!! GTGTATTGATGGTTTTTTGT+TGG - chr3_4:58427027-58427046 Msa0509830:CDS 30.0%
!!! TGATGGTTTTTTGTTGGATT+AGG - chr3_4:58427033-58427052 Msa0509830:CDS 30.0%
!!! GATGGTTTTTTGTTGGATTA+GGG - chr3_4:58427034-58427053 Msa0509830:CDS 30.0%
!!! ATGGTTTTTTGTTGGATTAG+GGG - chr3_4:58427035-58427054 Msa0509830:CDS 30.0%
AGTGAACTAAATTTAGCTAG+AGG + chr3_4:58427122-58427141 None:intergenic 30.0%
! TCTAGCTAAATTTAGTTCAC+TGG - chr3_4:58427121-58427140 Msa0509830:five_prime_UTR 30.0%
ATCAATCCCACTAAAATCAA+TGG - chr3_4:58427201-58427220 Msa0509830:five_prime_UTR 30.0%
!!! CTCTTTCCATTGATTTTAGT+GGG + chr3_4:58427210-58427229 None:intergenic 30.0%
!!! ACTCTTTCCATTGATTTTAG+TGG + chr3_4:58427211-58427230 None:intergenic 30.0%
!! ATGGAAAGAGTACTTAAACT+AGG - chr3_4:58427220-58427239 Msa0509830:five_prime_UTR 30.0%
!!! TTTTAGGTTTATTGGGAGTT+GGG + chr3_4:58425059-58425078 None:intergenic 30.0%
TTGTAATGGTAACCTTTCTT+TGG + chr3_4:58425198-58425217 None:intergenic 30.0%
! CATATATTAGTTTCTGAGCT+GGG - chr3_4:58426375-58426394 Msa0509830:intron 30.0%
! TGTTATGGAAGAGTATGATT+CGG - chr3_4:58426896-58426915 Msa0509830:CDS 30.0%
CTATAGATTACAACAAAGCA+AGG + chr3_4:58426993-58427012 None:intergenic 30.0%
! TGCTTTGTTGTAATCTATAG+AGG - chr3_4:58426993-58427012 Msa0509830:CDS 30.0%
!!! GTGTATTGATGGTTTTTTGT+TGG - chr3_4:58427027-58427046 Msa0509830:CDS 30.0%
!!! TGATGGTTTTTTGTTGGATT+AGG - chr3_4:58427033-58427052 Msa0509830:CDS 30.0%
!!! GATGGTTTTTTGTTGGATTA+GGG - chr3_4:58427034-58427053 Msa0509830:CDS 30.0%
!!! ATGGTTTTTTGTTGGATTAG+GGG - chr3_4:58427035-58427054 Msa0509830:CDS 30.0%
AGTGAACTAAATTTAGCTAG+AGG + chr3_4:58427122-58427141 None:intergenic 30.0%
! TCTAGCTAAATTTAGTTCAC+TGG - chr3_4:58427121-58427140 Msa0509830:five_prime_UTR 30.0%
ATCAATCCCACTAAAATCAA+TGG - chr3_4:58427201-58427220 Msa0509830:five_prime_UTR 30.0%
!!! CTCTTTCCATTGATTTTAGT+GGG + chr3_4:58427210-58427229 None:intergenic 30.0%
!!! ACTCTTTCCATTGATTTTAG+TGG + chr3_4:58427211-58427230 None:intergenic 30.0%
!! ATGGAAAGAGTACTTAAACT+AGG - chr3_4:58427220-58427239 Msa0509830:five_prime_UTR 30.0%
!!! GTTTTAGGTTTATTGGGAGT+TGG + chr3_4:58425060-58425079 None:intergenic 35.0%
!!! TCTCTGTTTTTTGTGGCTTT+TGG + chr3_4:58425243-58425262 None:intergenic 35.0%
!!! GGTTGTTTCTCTGTTTTTTG+TGG + chr3_4:58425250-58425269 None:intergenic 35.0%
!!! TTCTTTGGCTGTTTTTGTTC+TGG + chr3_4:58425376-58425395 None:intergenic 35.0%
CATCTTCTTGCATTTCTTGT+TGG + chr3_4:58425446-58425465 None:intergenic 35.0%
TGCAAGAAGATGAAATGTTC+AGG - chr3_4:58425454-58425473 Msa0509830:CDS 35.0%
CACAAGAAAAAGGTTTCACT+TGG - chr3_4:58425562-58425581 Msa0509830:CDS 35.0%
AAGAAAAAGGTTTCACTTGG+TGG - chr3_4:58425565-58425584 Msa0509830:CDS 35.0%
! TGGTGGATGCAAAAACAATT+TGG - chr3_4:58425582-58425601 Msa0509830:CDS 35.0%
TTCATTCAAAGGAGCTTTCA+TGG + chr3_4:58425626-58425645 None:intergenic 35.0%
ACAATCAGGACAAGAACAAA+TGG + chr3_4:58425827-58425846 None:intergenic 35.0%
ATTTGTTCTTGTCCTGATTG+TGG - chr3_4:58425826-58425845 Msa0509830:CDS 35.0%
TTCATAATCTCACCACAATC+AGG + chr3_4:58425841-58425860 None:intergenic 35.0%
TATATGTATTGAAGACACCG+AGG + chr3_4:58426152-58426171 None:intergenic 35.0%
TATTCTCTCGACTAAGAGTT+AGG - chr3_4:58426209-58426228 Msa0509830:intron 35.0%
! TCTTGGATACATTAATGGAC+CGG - chr3_4:58426244-58426263 Msa0509830:intron 35.0%
! GCATATATTAGTTTCTGAGC+TGG - chr3_4:58426374-58426393 Msa0509830:intron 35.0%
ATGTTCTTGCTTGTATCTTC+TGG + chr3_4:58426402-58426421 None:intergenic 35.0%
! TTATGGTTTTCTGTGTGTTG+TGG + chr3_4:58426500-58426519 None:intergenic 35.0%
GTACTCTTCGAATTTGGTTA+TGG + chr3_4:58426517-58426536 None:intergenic 35.0%
GTTTGTTCTTTAGGCCTAAA+CGG - chr3_4:58426636-58426655 Msa0509830:CDS 35.0%
!! AAACACGGGTTTAAGTTGAA+TGG - chr3_4:58426711-58426730 Msa0509830:CDS 35.0%
!! TTTAAGTTGAATGGTAGCGA+TGG - chr3_4:58426720-58426739 Msa0509830:CDS 35.0%
!! TTAAGTTGAATGGTAGCGAT+GGG - chr3_4:58426721-58426740 Msa0509830:CDS 35.0%
AAGCAAGGTAAAATAGCTCT+AGG + chr3_4:58426978-58426997 None:intergenic 35.0%
! TTCTTTGCAATGTCACTTGA+TGG - chr3_4:58427065-58427084 Msa0509830:CDS 35.0%
!!! TTAGTTCACTGGCGTTTTTT+AGG - chr3_4:58427132-58427151 Msa0509830:five_prime_UTR 35.0%
!!! TAGTTCACTGGCGTTTTTTA+GGG - chr3_4:58427133-58427152 Msa0509830:five_prime_UTR 35.0%
! TACTTCCTAGCACTTTGTTT+AGG + chr3_4:58425008-58425027 None:intergenic 35.0%
!!! GTTTTAGGTTTATTGGGAGT+TGG + chr3_4:58425060-58425079 None:intergenic 35.0%
!!! TCTCTGTTTTTTGTGGCTTT+TGG + chr3_4:58425243-58425262 None:intergenic 35.0%
!!! GGTTGTTTCTCTGTTTTTTG+TGG + chr3_4:58425250-58425269 None:intergenic 35.0%
!!! TTCTTTGGCTGTTTTTGTTC+TGG + chr3_4:58425376-58425395 None:intergenic 35.0%
CATCTTCTTGCATTTCTTGT+TGG + chr3_4:58425446-58425465 None:intergenic 35.0%
TGCAAGAAGATGAAATGTTC+AGG - chr3_4:58425454-58425473 Msa0509830:CDS 35.0%
CACAAGAAAAAGGTTTCACT+TGG - chr3_4:58425562-58425581 Msa0509830:CDS 35.0%
AAGAAAAAGGTTTCACTTGG+TGG - chr3_4:58425565-58425584 Msa0509830:CDS 35.0%
! TGGTGGATGCAAAAACAATT+TGG - chr3_4:58425582-58425601 Msa0509830:CDS 35.0%
TTCATTCAAAGGAGCTTTCA+TGG + chr3_4:58425626-58425645 None:intergenic 35.0%
ACAATCAGGACAAGAACAAA+TGG + chr3_4:58425827-58425846 None:intergenic 35.0%
ATTTGTTCTTGTCCTGATTG+TGG - chr3_4:58425826-58425845 Msa0509830:CDS 35.0%
TTCATAATCTCACCACAATC+AGG + chr3_4:58425841-58425860 None:intergenic 35.0%
TATATGTATTGAAGACACCG+AGG + chr3_4:58426152-58426171 None:intergenic 35.0%
TATTCTCTCGACTAAGAGTT+AGG - chr3_4:58426209-58426228 Msa0509830:intron 35.0%
! TCTTGGATACATTAATGGAC+CGG - chr3_4:58426244-58426263 Msa0509830:intron 35.0%
! GCATATATTAGTTTCTGAGC+TGG - chr3_4:58426374-58426393 Msa0509830:intron 35.0%
ATGTTCTTGCTTGTATCTTC+TGG + chr3_4:58426402-58426421 None:intergenic 35.0%
! TTATGGTTTTCTGTGTGTTG+TGG + chr3_4:58426500-58426519 None:intergenic 35.0%
GTACTCTTCGAATTTGGTTA+TGG + chr3_4:58426517-58426536 None:intergenic 35.0%
GTTTGTTCTTTAGGCCTAAA+CGG - chr3_4:58426636-58426655 Msa0509830:CDS 35.0%
!! AAACACGGGTTTAAGTTGAA+TGG - chr3_4:58426711-58426730 Msa0509830:CDS 35.0%
!! TTTAAGTTGAATGGTAGCGA+TGG - chr3_4:58426720-58426739 Msa0509830:CDS 35.0%
!! TTAAGTTGAATGGTAGCGAT+GGG - chr3_4:58426721-58426740 Msa0509830:CDS 35.0%
AAGCAAGGTAAAATAGCTCT+AGG + chr3_4:58426978-58426997 None:intergenic 35.0%
! TTCTTTGCAATGTCACTTGA+TGG - chr3_4:58427065-58427084 Msa0509830:CDS 35.0%
!!! TTAGTTCACTGGCGTTTTTT+AGG - chr3_4:58427132-58427151 Msa0509830:five_prime_UTR 35.0%
!!! TAGTTCACTGGCGTTTTTTA+GGG - chr3_4:58427133-58427152 Msa0509830:five_prime_UTR 35.0%
!!! GTGGCTTTTGGTTTTCCTTT+TGG + chr3_4:58425231-58425250 None:intergenic 40.0%
AAACAGAGAAACAACCCTCT+TGG - chr3_4:58425254-58425273 Msa0509830:exon 40.0%
AACAGAGAAACAACCCTCTT+GGG - chr3_4:58425255-58425274 Msa0509830:exon 40.0%
AATCCAACAACAACAGCAGA+AGG - chr3_4:58425315-58425334 Msa0509830:CDS 40.0%
! TTTTGTTCTGGTACAGGTTG+AGG + chr3_4:58425364-58425383 None:intergenic 40.0%
CAACAACACTGGAATGACAA+TGG - chr3_4:58425486-58425505 Msa0509830:CDS 40.0%
!! GTTGCTGCTGTTGTTATTTC+TGG + chr3_4:58425517-58425536 None:intergenic 40.0%
GCTCCTTTGAATGAACTCAA+CGG - chr3_4:58425631-58425650 Msa0509830:CDS 40.0%
CTTCCGTTGAGTTCATTCAA+AGG + chr3_4:58425637-58425656 None:intergenic 40.0%
TGAAAGTGAAGACGAAGAAG+AGG + chr3_4:58425671-58425690 None:intergenic 40.0%
CTCTAGTGAAACCAAGAACA+GGG + chr3_4:58425786-58425805 None:intergenic 40.0%
TCTCTAGTGAAACCAAGAAC+AGG + chr3_4:58425787-58425806 None:intergenic 40.0%
TGACAGCTTGATGAAGTTCA+AGG + chr3_4:58425873-58425892 None:intergenic 40.0%
TTACGTCCTAACTCTCAGTT+GGG - chr3_4:58426115-58426134 Msa0509830:intron 40.0%
AATGTAACACAAGCGAGAAC+CGG + chr3_4:58426266-58426285 None:intergenic 40.0%
! TGTTGTGGACTTTAAGGATG+CGG + chr3_4:58426485-58426504 None:intergenic 40.0%
TCTGTGTGTTGTGGACTTTA+AGG + chr3_4:58426491-58426510 None:intergenic 40.0%
GTCTCTGTACTCTTCGAATT+TGG + chr3_4:58426523-58426542 None:intergenic 40.0%
GTGTGCGGCATAATAAAACA+CGG - chr3_4:58426696-58426715 Msa0509830:CDS 40.0%
TGTGCGGCATAATAAAACAC+GGG - chr3_4:58426697-58426716 Msa0509830:CDS 40.0%
! CGACAAAGCTAGTAGTGTTT+TGG - chr3_4:58426776-58426795 Msa0509830:CDS 40.0%
!! AGTAGTGTTTTGGACCTTTC+AGG - chr3_4:58426786-58426805 Msa0509830:CDS 40.0%
AGAGTGAAGAAGAACATGGA+AGG - chr3_4:58426864-58426883 Msa0509830:CDS 40.0%
GGAAGGTGGTAGTAATGTTA+TGG - chr3_4:58426881-58426900 Msa0509830:CDS 40.0%
TGCTGGGGCTTATTCTAATT+TGG - chr3_4:58426932-58426951 Msa0509830:CDS 40.0%
!!! AGTTCACTGGCGTTTTTTAG+GGG - chr3_4:58427134-58427153 Msa0509830:five_prime_UTR 40.0%
!!! GTGGCTTTTGGTTTTCCTTT+TGG + chr3_4:58425231-58425250 None:intergenic 40.0%
AAACAGAGAAACAACCCTCT+TGG - chr3_4:58425254-58425273 Msa0509830:exon 40.0%
AACAGAGAAACAACCCTCTT+GGG - chr3_4:58425255-58425274 Msa0509830:exon 40.0%
AATCCAACAACAACAGCAGA+AGG - chr3_4:58425315-58425334 Msa0509830:CDS 40.0%
! TTTTGTTCTGGTACAGGTTG+AGG + chr3_4:58425364-58425383 None:intergenic 40.0%
CAACAACACTGGAATGACAA+TGG - chr3_4:58425486-58425505 Msa0509830:CDS 40.0%
!! GTTGCTGCTGTTGTTATTTC+TGG + chr3_4:58425517-58425536 None:intergenic 40.0%
GCTCCTTTGAATGAACTCAA+CGG - chr3_4:58425631-58425650 Msa0509830:CDS 40.0%
CTTCCGTTGAGTTCATTCAA+AGG + chr3_4:58425637-58425656 None:intergenic 40.0%
TGAAAGTGAAGACGAAGAAG+AGG + chr3_4:58425671-58425690 None:intergenic 40.0%
CTCTAGTGAAACCAAGAACA+GGG + chr3_4:58425786-58425805 None:intergenic 40.0%
TCTCTAGTGAAACCAAGAAC+AGG + chr3_4:58425787-58425806 None:intergenic 40.0%
TGACAGCTTGATGAAGTTCA+AGG + chr3_4:58425873-58425892 None:intergenic 40.0%
TTACGTCCTAACTCTCAGTT+GGG - chr3_4:58426115-58426134 Msa0509830:intron 40.0%
AATGTAACACAAGCGAGAAC+CGG + chr3_4:58426266-58426285 None:intergenic 40.0%
! TGTTGTGGACTTTAAGGATG+CGG + chr3_4:58426485-58426504 None:intergenic 40.0%
TCTGTGTGTTGTGGACTTTA+AGG + chr3_4:58426491-58426510 None:intergenic 40.0%
GTCTCTGTACTCTTCGAATT+TGG + chr3_4:58426523-58426542 None:intergenic 40.0%
GTGTGCGGCATAATAAAACA+CGG - chr3_4:58426696-58426715 Msa0509830:CDS 40.0%
TGTGCGGCATAATAAAACAC+GGG - chr3_4:58426697-58426716 Msa0509830:CDS 40.0%
! CGACAAAGCTAGTAGTGTTT+TGG - chr3_4:58426776-58426795 Msa0509830:CDS 40.0%
!! AGTAGTGTTTTGGACCTTTC+AGG - chr3_4:58426786-58426805 Msa0509830:CDS 40.0%
AGAGTGAAGAAGAACATGGA+AGG - chr3_4:58426864-58426883 Msa0509830:CDS 40.0%
GGAAGGTGGTAGTAATGTTA+TGG - chr3_4:58426881-58426900 Msa0509830:CDS 40.0%
TGCTGGGGCTTATTCTAATT+TGG - chr3_4:58426932-58426951 Msa0509830:CDS 40.0%
!!! AGTTCACTGGCGTTTTTTAG+GGG - chr3_4:58427134-58427153 Msa0509830:five_prime_UTR 40.0%
CTTCCTTCTGCTGTTGTTGT+TGG + chr3_4:58425321-58425340 None:intergenic 45.0%
!!! GGCTGTTTTTGTTCTGGTAC+AGG + chr3_4:58425370-58425389 None:intergenic 45.0%
GCAGCATCTTCTAACTCTTC+TGG - chr3_4:58425691-58425710 Msa0509830:CDS 45.0%
!! TCTTCTAACTCTTCTGGAGC+TGG - chr3_4:58425697-58425716 Msa0509830:CDS 45.0%
!! TTCTGGAGCTGGTTCTTTCA+GGG - chr3_4:58425708-58425727 Msa0509830:CDS 45.0%
CTTTCAGGGGAATGCAGTTT+AGG - chr3_4:58425722-58425741 Msa0509830:CDS 45.0%
ATGCAGTTTAGGAGACTCTC+CGG - chr3_4:58425733-58425752 Msa0509830:CDS 45.0%
CATTCGACACTCGTAACAAC+CGG + chr3_4:58425755-58425774 None:intergenic 45.0%
ATGGTTGTTGACCCTGTTCT+TGG - chr3_4:58425772-58425791 Msa0509830:CDS 45.0%
CATCAAGCTGTCAAACATGC+AGG - chr3_4:58425880-58425899 Msa0509830:intron 45.0%
CAGCTCAGTCTCAGATACTT+TGG + chr3_4:58425967-58425986 None:intergenic 45.0%
GTTACGTCCTAACTCTCAGT+TGG - chr3_4:58426114-58426133 Msa0509830:intron 45.0%
TACGTCCTAACTCTCAGTTG+GGG - chr3_4:58426116-58426135 Msa0509830:intron 45.0%
TATCTCCCCAACTGAGAGTT+AGG + chr3_4:58426124-58426143 None:intergenic 45.0%
GTTGGGGAGATAATGAACCT+CGG - chr3_4:58426132-58426151 Msa0509830:intron 45.0%
GCTTCTTTAGCCAGCTTGAA+TGG + chr3_4:58426440-58426459 None:intergenic 45.0%
CAGACGGAAACGAGTTACTA+AGG - chr3_4:58426595-58426614 Msa0509830:CDS 45.0%
AGAGGTTTGAGGAACCGTTT+AGG + chr3_4:58426653-58426672 None:intergenic 45.0%
! TGTTGAGTTGCAGAGGTTTG+AGG + chr3_4:58426664-58426683 None:intergenic 45.0%
! ATTGGGATGTTGAGTTGCAG+AGG + chr3_4:58426671-58426690 None:intergenic 45.0%
ATATTGACGACAGCAACGAG+TGG - chr3_4:58426744-58426763 Msa0509830:CDS 45.0%
! TGAGAGTGGTGATGAGAAGA+GGG - chr3_4:58426812-58426831 Msa0509830:CDS 45.0%
TGATGAGAAGAGGGCAATGT+TGG - chr3_4:58426821-58426840 Msa0509830:CDS 45.0%
!! AGAGGGCAATGTTGGTTTGT+AGG - chr3_4:58426829-58426848 Msa0509830:CDS 45.0%
!! GAGGGCAATGTTGGTTTGTA+GGG - chr3_4:58426830-58426849 Msa0509830:CDS 45.0%
!! TTGGTTTGTAGGGTGATAGC+AGG - chr3_4:58426840-58426859 Msa0509830:CDS 45.0%
! TGGTTTGTAGGGTGATAGCA+GGG - chr3_4:58426841-58426860 Msa0509830:CDS 45.0%
AGGGAGAGTGAAGAAGAACA+TGG - chr3_4:58426860-58426879 Msa0509830:CDS 45.0%
GTGAAGAAGAACATGGAAGG+TGG - chr3_4:58426867-58426886 Msa0509830:CDS 45.0%
!! GAGTATGATTCGGTTAGTGC+TGG - chr3_4:58426906-58426925 Msa0509830:CDS 45.0%
CTTCCTTCTGCTGTTGTTGT+TGG + chr3_4:58425321-58425340 None:intergenic 45.0%
!!! GGCTGTTTTTGTTCTGGTAC+AGG + chr3_4:58425370-58425389 None:intergenic 45.0%
GCAGCATCTTCTAACTCTTC+TGG - chr3_4:58425691-58425710 Msa0509830:CDS 45.0%
!! TCTTCTAACTCTTCTGGAGC+TGG - chr3_4:58425697-58425716 Msa0509830:CDS 45.0%
!! TTCTGGAGCTGGTTCTTTCA+GGG - chr3_4:58425708-58425727 Msa0509830:CDS 45.0%
CTTTCAGGGGAATGCAGTTT+AGG - chr3_4:58425722-58425741 Msa0509830:CDS 45.0%
ATGCAGTTTAGGAGACTCTC+CGG - chr3_4:58425733-58425752 Msa0509830:CDS 45.0%
CATTCGACACTCGTAACAAC+CGG + chr3_4:58425755-58425774 None:intergenic 45.0%
ATGGTTGTTGACCCTGTTCT+TGG - chr3_4:58425772-58425791 Msa0509830:CDS 45.0%
CATCAAGCTGTCAAACATGC+AGG - chr3_4:58425880-58425899 Msa0509830:intron 45.0%
CAGCTCAGTCTCAGATACTT+TGG + chr3_4:58425967-58425986 None:intergenic 45.0%
GTTACGTCCTAACTCTCAGT+TGG - chr3_4:58426114-58426133 Msa0509830:intron 45.0%
TACGTCCTAACTCTCAGTTG+GGG - chr3_4:58426116-58426135 Msa0509830:intron 45.0%
TATCTCCCCAACTGAGAGTT+AGG + chr3_4:58426124-58426143 None:intergenic 45.0%
GTTGGGGAGATAATGAACCT+CGG - chr3_4:58426132-58426151 Msa0509830:intron 45.0%
GCTTCTTTAGCCAGCTTGAA+TGG + chr3_4:58426440-58426459 None:intergenic 45.0%
CAGACGGAAACGAGTTACTA+AGG - chr3_4:58426595-58426614 Msa0509830:CDS 45.0%
AGAGGTTTGAGGAACCGTTT+AGG + chr3_4:58426653-58426672 None:intergenic 45.0%
! TGTTGAGTTGCAGAGGTTTG+AGG + chr3_4:58426664-58426683 None:intergenic 45.0%
! ATTGGGATGTTGAGTTGCAG+AGG + chr3_4:58426671-58426690 None:intergenic 45.0%
ATATTGACGACAGCAACGAG+TGG - chr3_4:58426744-58426763 Msa0509830:CDS 45.0%
! TGAGAGTGGTGATGAGAAGA+GGG - chr3_4:58426812-58426831 Msa0509830:CDS 45.0%
TGATGAGAAGAGGGCAATGT+TGG - chr3_4:58426821-58426840 Msa0509830:CDS 45.0%
!! AGAGGGCAATGTTGGTTTGT+AGG - chr3_4:58426829-58426848 Msa0509830:CDS 45.0%
!! GAGGGCAATGTTGGTTTGTA+GGG - chr3_4:58426830-58426849 Msa0509830:CDS 45.0%
!! TTGGTTTGTAGGGTGATAGC+AGG - chr3_4:58426840-58426859 Msa0509830:CDS 45.0%
! TGGTTTGTAGGGTGATAGCA+GGG - chr3_4:58426841-58426860 Msa0509830:CDS 45.0%
AGGGAGAGTGAAGAAGAACA+TGG - chr3_4:58426860-58426879 Msa0509830:CDS 45.0%
GTGAAGAAGAACATGGAAGG+TGG - chr3_4:58426867-58426886 Msa0509830:CDS 45.0%
!! GAGTATGATTCGGTTAGTGC+TGG - chr3_4:58426906-58426925 Msa0509830:CDS 45.0%
GTGTGAGTGGAGGCTCTTTA+TGG + chr3_4:58425035-58425054 None:intergenic 50.0%
AGAGAAACAACCCTCTTGGG+CGG - chr3_4:58425258-58425277 Msa0509830:exon 50.0%
GGTTCACTCTGCAACAACAC+TGG - chr3_4:58425475-58425494 Msa0509830:CDS 50.0%
!! CTTCTGGAGCTGGTTCTTTC+AGG - chr3_4:58425707-58425726 Msa0509830:CDS 50.0%
! TCTGGAGCTGGTTCTTTCAG+GGG - chr3_4:58425709-58425728 Msa0509830:CDS 50.0%
!! CGGTTGTTACGAGTGTCGAA+TGG - chr3_4:58425753-58425772 Msa0509830:CDS 50.0%
!! ATGCGGTCGATTTTGCAGAC+TGG + chr3_4:58426468-58426487 None:intergenic 50.0%
ACATCCCAATGCAACGTGTG+CGG - chr3_4:58426681-58426700 Msa0509830:CDS 50.0%
TATGCCGCACACGTTGCATT+GGG + chr3_4:58426688-58426707 None:intergenic 50.0%
TTATGCCGCACACGTTGCAT+TGG + chr3_4:58426689-58426708 None:intergenic 50.0%
!! GACCTTTCAGGTTGTGAGAG+TGG - chr3_4:58426798-58426817 Msa0509830:CDS 50.0%
CACCACTCTCACAACCTGAA+AGG + chr3_4:58426803-58426822 None:intergenic 50.0%
! GTGAGAGTGGTGATGAGAAG+AGG - chr3_4:58426811-58426830 Msa0509830:CDS 50.0%
GTGTGAGTGGAGGCTCTTTA+TGG + chr3_4:58425035-58425054 None:intergenic 50.0%
AGAGAAACAACCCTCTTGGG+CGG - chr3_4:58425258-58425277 Msa0509830:exon 50.0%
GGTTCACTCTGCAACAACAC+TGG - chr3_4:58425475-58425494 Msa0509830:CDS 50.0%
!! CTTCTGGAGCTGGTTCTTTC+AGG - chr3_4:58425707-58425726 Msa0509830:CDS 50.0%
! TCTGGAGCTGGTTCTTTCAG+GGG - chr3_4:58425709-58425728 Msa0509830:CDS 50.0%
!! CGGTTGTTACGAGTGTCGAA+TGG - chr3_4:58425753-58425772 Msa0509830:CDS 50.0%
!! ATGCGGTCGATTTTGCAGAC+TGG + chr3_4:58426468-58426487 None:intergenic 50.0%
ACATCCCAATGCAACGTGTG+CGG - chr3_4:58426681-58426700 Msa0509830:CDS 50.0%
TATGCCGCACACGTTGCATT+GGG + chr3_4:58426688-58426707 None:intergenic 50.0%
TTATGCCGCACACGTTGCAT+TGG + chr3_4:58426689-58426708 None:intergenic 50.0%
!! GACCTTTCAGGTTGTGAGAG+TGG - chr3_4:58426798-58426817 Msa0509830:CDS 50.0%
CACCACTCTCACAACCTGAA+AGG + chr3_4:58426803-58426822 None:intergenic 50.0%
! GTGAGAGTGGTGATGAGAAG+AGG - chr3_4:58426811-58426830 Msa0509830:CDS 50.0%
! TTGGGAGTTGGGAGTGTGAG+TGG + chr3_4:58425048-58425067 None:intergenic 55.0%
! GGCGGTGGTAAGAGGCTTTT+TGG - chr3_4:58425276-58425295 Msa0509830:CDS 55.0%
TTTCCGTCTGCTATGCAGCG+GGG + chr3_4:58426585-58426604 None:intergenic 55.0%
GTTTCCGTCTGCTATGCAGC+GGG + chr3_4:58426586-58426605 None:intergenic 55.0%
CGTTTCCGTCTGCTATGCAG+CGG + chr3_4:58426587-58426606 None:intergenic 55.0%
!! TCGGTTAGTGCTGGTGATGC+TGG - chr3_4:58426915-58426934 Msa0509830:CDS 55.0%
!! CGGTTAGTGCTGGTGATGCT+GGG - chr3_4:58426916-58426935 Msa0509830:CDS 55.0%
!! GGTTAGTGCTGGTGATGCTG+GGG - chr3_4:58426917-58426936 Msa0509830:CDS 55.0%
! TTGGGAGTTGGGAGTGTGAG+TGG + chr3_4:58425048-58425067 None:intergenic 55.0%
! GGCGGTGGTAAGAGGCTTTT+TGG - chr3_4:58425276-58425295 Msa0509830:CDS 55.0%
TTTCCGTCTGCTATGCAGCG+GGG + chr3_4:58426585-58426604 None:intergenic 55.0%
GTTTCCGTCTGCTATGCAGC+GGG + chr3_4:58426586-58426605 None:intergenic 55.0%
CGTTTCCGTCTGCTATGCAG+CGG + chr3_4:58426587-58426606 None:intergenic 55.0%
!! TCGGTTAGTGCTGGTGATGC+TGG - chr3_4:58426915-58426934 Msa0509830:CDS 55.0%
!! CGGTTAGTGCTGGTGATGCT+GGG - chr3_4:58426916-58426935 Msa0509830:CDS 55.0%
!! GGTTAGTGCTGGTGATGCTG+GGG - chr3_4:58426917-58426936 Msa0509830:CDS 55.0%
! GGAGTTGGGAGTGTGAGTGG+AGG + chr3_4:58425045-58425064 None:intergenic 60.0%
GAAACAACCCTCTTGGGCGG+TGG - chr3_4:58425261-58425280 Msa0509830:CDS 60.0%
CCTCTTACCACCGCCCAAGA+GGG + chr3_4:58425271-58425290 None:intergenic 60.0%
TTCCGTCTGCTATGCAGCGG+GGG + chr3_4:58426584-58426603 None:intergenic 60.0%
! GGAGTTGGGAGTGTGAGTGG+AGG + chr3_4:58425045-58425064 None:intergenic 60.0%
GAAACAACCCTCTTGGGCGG+TGG - chr3_4:58425261-58425280 Msa0509830:CDS 60.0%
CCTCTTACCACCGCCCAAGA+GGG + chr3_4:58425271-58425290 None:intergenic 60.0%
TTCCGTCTGCTATGCAGCGG+GGG + chr3_4:58426584-58426603 None:intergenic 60.0%
CCCTCTTGGGCGGTGGTAAG+AGG - chr3_4:58425268-58425287 Msa0509830:CDS 65.0%
GCCTCTTACCACCGCCCAAG+AGG + chr3_4:58425272-58425291 None:intergenic 65.0%
CACCCCCGCTGCATAGCAGA+CGG - chr3_4:58426579-58426598 Msa0509830:CDS 65.0%
CCCTCTTGGGCGGTGGTAAG+AGG - chr3_4:58425268-58425287 Msa0509830:CDS 65.0%
GCCTCTTACCACCGCCCAAG+AGG + chr3_4:58425272-58425291 None:intergenic 65.0%
CACCCCCGCTGCATAGCAGA+CGG - chr3_4:58426579-58426598 Msa0509830:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58425007 58427274 58425007 ID=Msa0509830;Name=Msa0509830
chr3_4 mRNA 58425007 58427274 58425007 ID=Msa0509830-mRNA-1;Parent=Msa0509830;Name=Msa0509830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=171|1|1|1|1|1|2|252|453
chr3_4 exon 58425007 58425896 58425007 ID=Msa0509830-mRNA-1:exon:13537;Parent=Msa0509830-mRNA-1
chr3_4 exon 58426380 58427274 58426380 ID=Msa0509830-mRNA-1:exon:13536;Parent=Msa0509830-mRNA-1
chr3_4 five_prime_UTR 58427104 58427274 58427104 ID=Msa0509830-mRNA-1:five_prime_utr;Parent=Msa0509830-mRNA-1
chr3_4 CDS 58426380 58427103 58426380 ID=Msa0509830-mRNA-1:cds;Parent=Msa0509830-mRNA-1
chr3_4 CDS 58425259 58425896 58425259 ID=Msa0509830-mRNA-1:cds;Parent=Msa0509830-mRNA-1
chr3_4 three_prime_UTR 58425007 58425258 58425007 ID=Msa0509830-mRNA-1:three_prime_utr;Parent=Msa0509830-mRNA-1
Gene Sequence

>Msa0509830

ATGAGCAAATCAAAAATCCAAAGAAAGGTTACCATTACAAATCATATAAGCCAAAAGGAAAACCAAAAGCCACAAAAAACAGAGAAACAACCCTCTTGGGCGGTGGTAAGAGGCTTTTTGGCTTGTAAGAATGTTCAAATCCAACAACAACAGCAGAAGGAAGCAAAACAGCTACAACAACAACCTCAACCTGTACCAGAACAAAAACAGCCAAAGAAAAAACAAGAACAAAGGAAGCTGAAAGAAGAAAGAGTCTCAGAAGATACCAACAAGAAATGCAAGAAGATGAAATGTTCAGGTTCACTCTGCAACAACACTGGAATGACAATGGCAAAACCAGAAATAACAACAGCAGCAACAACAACAAGAACAACTACAGATATTCACAAGAAAAAGGTTTCACTTGGTGGATGCAAAAACAATTTGGCTTCTAGTTCAAGCAGATCCATGAAAGCTCCTTTGAATGAACTCAACGGAAGAACTGTGTCAGCCTCTTCTTCGTCTTCACTTTCAGCAGCATCTTCTAACTCTTCTGGAGCTGGTTCTTTCAGGGGAATGCAGTTTAGGAGACTCTCCGGTTGTTACGAGTGTCGAATGGTTGTTGACCCTGTTCTTGGTTTCACTAGAGACTCTTCTCTAAGAAGCTCCATTTGTTCTTGTCCTGATTGTGGTGAGATTATGAAAACTGAAAGCCTTGAACTTCATCAAGCTGTCAAACATGCAGTTTCTGAGCTGGGTCCAGAAGATACAAGCAAGAACATAGTTGAAATAATATTCCATTCAAGCTGGCTAAAGAAGCAATCTCCAGTCTGCAAAATCGACCGCATCCTTAAAGTCCACAACACACAGAAAACCATAACCAAATTCGAAGAGTACAGAGACTCAATCAAAGCAAAAGCAACAAATCTCTCAAAAAAACACCCCCGCTGCATAGCAGACGGAAACGAGTTACTAAGGTTTCACTGCACAACATTTGTTTGTTCTTTAGGCCTAAACGGTTCCTCAAACCTCTGCAACTCAACATCCCAATGCAACGTGTGCGGCATAATAAAACACGGGTTTAAGTTGAATGGTAGCGATGGGATATTGACGACAGCAACGAGTGGTAAAGCACACGACAAAGCTAGTAGTGTTTTGGACCTTTCAGGTTGTGAGAGTGGTGATGAGAAGAGGGCAATGTTGGTTTGTAGGGTGATAGCAGGGAGAGTGAAGAAGAACATGGAAGGTGGTAGTAATGTTATGGAAGAGTATGATTCGGTTAGTGCTGGTGATGCTGGGGCTTATTCTAATTTGGATGAGTTGTATGTGAATAATCCTAGAGCTATTTTACCTTGCTTTGTTGTAATCTATAGAGGCTTTTGA
Protein sequence

>Msa0509830

MSKSKIQRKVTITNHISQKENQKPQKTEKQPSWAVVRGFLACKNVQIQQQQQKEAKQLQQQPQPVPEQKQPKKKQEQRKLKEERVSEDTNKKCKKMKCSGSLCNNTGMTMAKPEITTAATTTRTTTDIHKKKVSLGGCKNNLASSSSRSMKAPLNELNGRTVSASSSSSLSAASSNSSGAGSFRGMQFRRLSGCYECRMVVDPVLGFTRDSSLRSSICSCPDCGEIMKTESLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQKTITKFEEYRDSIKAKATNLSKKHPRCIADGNELLRFHCTTFVCSLGLNGSSNLCNSTSQCNVCGIIKHGFKLNGSDGILTTATSGKAHDKASSVLDLSGCESGDEKRAMLVCRVIAGRVKKNMEGGSNVMEEYDSVSAGDAGAYSNLDELYVNNPRAILPCFVVIYRGF*