AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384410 MtrunA17_Chr3g0142061 98.299 294 4 1 1 293 1 294 0.0 584
Msa1384410 MtrunA17_Chr3g0091571 30.556 216 133 5 61 260 251 465 1.74e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384410 AT1G75460.1 82.222 225 36 3 64 286 56 278 1.59e-122 352
Msa1384410 AT1G19740.1 73.123 253 61 4 37 284 26 276 9.74e-114 329
Msa1384410 AT1G18660.1 30.233 215 135 5 61 260 257 471 2.09e-20 91.3
Msa1384410 AT1G18660.2 30.233 215 135 5 61 260 257 471 2.09e-20 91.3
Msa1384410 AT1G18660.3 30.233 215 135 5 61 260 257 471 2.09e-20 91.3
Msa1384410 AT1G18660.4 30.047 213 134 5 61 258 257 469 5.10e-19 87.4

Find 74 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCTGGTTCTCTTTCC+CGG 0.239782 tig0020661:+12352 Msa1384410:CDS
GCAACAAGCTTTGCTGGAAT+TGG 0.287787 tig0020661:+12834 Msa1384410:CDS
CCCTTTGTTCCCTCTTCCTC+TGG 0.303397 tig0020661:+12339 Msa1384410:CDS
ATCTACAACGACGCCGTTAC+CGG 0.361966 tig0020661:+12460 Msa1384410:CDS
GAATGGATAAGCTGTGGAAT+TGG 0.380189 tig0020661:-12112 None:intergenic
TAGAGAGCAACAAGCTTTGC+TGG 0.387344 tig0020661:+12828 Msa1384410:CDS
TTCTGTTACATCGTCGGAGT+TGG 0.409875 tig0020661:-12314 None:intergenic
GGAAAGAGAACCAGAGGAAG+AGG 0.410585 tig0020661:-12349 None:intergenic
AATGGATAAGCTGTGGAATT+GGG 0.420732 tig0020661:-12111 None:intergenic
ATTCGGTTATCGAATCGATT+AGG 0.434648 tig0020661:+12712 Msa1384410:CDS
AGCAAAGCTTGTTGCTCTCT+AGG 0.438130 tig0020661:-12826 None:intergenic
CTGGAGAGGGAGGATTGCTC+CGG 0.459586 tig0020661:-12371 None:intergenic
GAGTTAGCGTGGTGCTTCTC+CGG 0.461263 tig0020661:-12289 None:intergenic
TTGCTGGAATTGGAAGATAC+TGG 0.465086 tig0020661:+12844 Msa1384410:CDS
TCTGTTACATCGTCGGAGTT+GGG 0.466042 tig0020661:-12313 None:intergenic
GGAAAAGCAGAGAAAGAAGT+TGG 0.471044 tig0020661:+12736 Msa1384410:CDS
CGCCGAATCTGAGATCGGTT+TGG 0.472867 tig0020661:-12435 None:intergenic
ATTTAACAAAGGTGAATTTG+AGG 0.472885 tig0020661:-12134 None:intergenic
CGTATATGAAAGACGTGATT+CGG 0.475568 tig0020661:+12695 Msa1384410:CDS
TAACTCCCTTCTCCGATGTT+CGG 0.477101 tig0020661:+12255 Msa1384410:CDS
CCAGAGGAAGAGGGAACAAA+GGG 0.483400 tig0020661:-12339 None:intergenic
TCTGCTGACGTGGATGTTGA+CGG 0.485829 tig0020661:+12652 Msa1384410:CDS
TGCGAACCACTTTCGTGATA+CGG 0.495843 tig0020661:-12576 None:intergenic
ACCAGAGGAAGAGGGAACAA+AGG 0.495884 tig0020661:-12340 None:intergenic
AAGAAGTTGGTGATTTGAGA+AGG 0.506570 tig0020661:+12749 Msa1384410:CDS
CTCCAAACCGATCTCAGATT+CGG 0.513016 tig0020661:+12433 Msa1384410:CDS
CGATTCTTCTTGATCTGCAA+AGG 0.513629 tig0020661:+12541 Msa1384410:CDS
TGACGTGGATGTTGACGGTT+TGG 0.523603 tig0020661:+12657 Msa1384410:CDS
ACAAAGGTGAATTTGAGGAA+TGG 0.524563 tig0020661:-12129 None:intergenic
AAGACGCCGAACATCGGAGA+AGG 0.526361 tig0020661:-12261 None:intergenic
GGTAGCGAAACTCGAAGATC+TGG 0.526389 tig0020661:-12390 None:intergenic
GCCACACGAGCGACGAGATA+AGG 0.527547 tig0020661:-12604 None:intergenic
ACCTTCACCTTCTGCTGACG+TGG 0.537960 tig0020661:+12642 Msa1384410:CDS
CGAAACTCGAAGATCTGGAG+AGG 0.546555 tig0020661:-12385 None:intergenic
CGAATCTGAGATCGGTTTGG+AGG 0.550475 tig0020661:-12432 None:intergenic
CATCATGATGATGGTGATGA+AGG 0.550733 tig0020661:-12964 None:intergenic
TGCAAGATTGATGAGGGAAA+AGG 0.552398 tig0020661:+12867 Msa1384410:CDS
AGAACATTCAGATGCGGCGG+CGG 0.552805 tig0020661:-12208 None:intergenic
ACGATTCCGTATCACGAAAG+TGG 0.555815 tig0020661:+12570 Msa1384410:CDS
GAAAGAGAACCAGAGGAAGA+GGG 0.557773 tig0020661:-12348 None:intergenic
TGGAGAGGGAGGATTGCTCC+GGG 0.558531 tig0020661:-12370 None:intergenic
TTATCTGAAGTCGGTTGCGT+CGG 0.560429 tig0020661:+12484 Msa1384410:CDS
TTCAGATGCGGCGGCGGAGT+AGG 0.564966 tig0020661:-12202 None:intergenic
GCAACCGACTTCAGATAATC+CGG 0.567100 tig0020661:-12479 None:intergenic
GAAAAGAAGACGCCGAACAT+CGG 0.578682 tig0020661:-12267 None:intergenic
GATGAAGGAGAAGATGAAGA+TGG 0.583790 tig0020661:-12949 None:intergenic
GAATCCATACATCATGATGA+TGG 0.586174 tig0020661:-12973 None:intergenic
ACCTTATCTCGTCGCTCGTG+TGG 0.587657 tig0020661:+12603 Msa1384410:CDS
TAGAGTTACGGCGGCGAGAG+TGG 0.592773 tig0020661:-12234 None:intergenic
AGTGGAGTGAGATTTAACAA+AGG 0.593394 tig0020661:-12145 None:intergenic
AGACGCCGAACATCGGAGAA+GGG 0.600938 tig0020661:-12260 None:intergenic
AGTTACGGCGGCGAGAGTGG+TGG 0.605508 tig0020661:-12231 None:intergenic
GGAGAAGGGAGTTAGAGTTA+CGG 0.606713 tig0020661:-12246 None:intergenic
TACTGGTGCAAGATTGATGA+GGG 0.609439 tig0020661:+12861 Msa1384410:CDS
ACTCGAAGATCTGGAGAGGG+AGG 0.612614 tig0020661:-12381 None:intergenic
CGGTTATCGAATCGATTAGG+TGG 0.619832 tig0020661:+12715 Msa1384410:CDS
AGGGAGTTCTGTTACATCGT+CGG 0.622473 tig0020661:-12320 None:intergenic
CGGCGGCGGAGTAGGTGTTG+AGG 0.626773 tig0020661:-12194 None:intergenic
TCCACGTCAGCAGAAGGTGA+AGG 0.630346 tig0020661:-12643 None:intergenic
TCAACATCCACGTCAGCAGA+AGG 0.631046 tig0020661:-12649 None:intergenic
GATGACGCCGAATCTGAGAT+CGG 0.634713 tig0020661:-12440 None:intergenic
GAAACTCGAAGATCTGGAGA+GGG 0.638580 tig0020661:-12384 None:intergenic
TGACGGTTTGGCGAACGAGG+TGG 0.639770 tig0020661:+12669 Msa1384410:CDS
GACTTCAGATAATCCGGTAA+CGG 0.642423 tig0020661:-12473 None:intergenic
TGTTGACGGTTTGGCGAACG+AGG 0.649491 tig0020661:+12666 Msa1384410:CDS
TGGAGAACATTCAGATGCGG+CGG 0.651359 tig0020661:-12211 None:intergenic
GTTACCGGATTATCTGAAGT+CGG 0.652627 tig0020661:+12475 Msa1384410:CDS
TTTGAGGAATGGATAAGCTG+TGG 0.652982 tig0020661:-12118 None:intergenic
CGGAGTTGGGAGAGTTAGCG+TGG 0.657208 tig0020661:-12300 None:intergenic
GCTCCGGGAAAGAGAACCAG+AGG 0.665734 tig0020661:-12355 None:intergenic
TGGTGGAGAACATTCAGATG+CGG 0.673867 tig0020661:-12214 None:intergenic
ATACTGGTGCAAGATTGATG+AGG 0.686122 tig0020661:+12860 Msa1384410:CDS
GGAGCGTGTGCATCATGACG+CGG 0.716824 tig0020661:-12411 None:intergenic
GAAGGGAGTTAGAGTTACGG+CGG 0.725021 tig0020661:-12243 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTTAACAAAGGTGAATTTG+AGG - tig0020661:12137-12156 None:intergenic 25.0%
!!! TTGAAAGATTTTAGGGTTTA+AGG - tig0020661:12173-12192 None:intergenic 25.0%
!! TTGAGGATTGAAAGATTTTA+GGG - tig0020661:12180-12199 None:intergenic 25.0%
! ATTTAACAAAGGTGAATTTG+AGG - tig0020661:12137-12156 None:intergenic 25.0%
!!! TTGAAAGATTTTAGGGTTTA+AGG - tig0020661:12173-12192 None:intergenic 25.0%
!! TTGAGGATTGAAAGATTTTA+GGG - tig0020661:12180-12199 None:intergenic 25.0%
! GTTGAGGATTGAAAGATTTT+AGG - tig0020661:12181-12200 None:intergenic 30.0%
CTTCCAACAAAAAACGAAAA+CGG - tig0020661:12790-12809 None:intergenic 30.0%
! GTTGAGGATTGAAAGATTTT+AGG - tig0020661:12181-12200 None:intergenic 30.0%
CTTCCAACAAAAAACGAAAA+CGG - tig0020661:12790-12809 None:intergenic 30.0%
AATGGATAAGCTGTGGAATT+GGG - tig0020661:12114-12133 None:intergenic 35.0%
ACAAAGGTGAATTTGAGGAA+TGG - tig0020661:12132-12151 None:intergenic 35.0%
AGTGGAGTGAGATTTAACAA+AGG - tig0020661:12148-12167 None:intergenic 35.0%
!!! ATTTTAGGGTTTAAGGAGAG+TGG - tig0020661:12166-12185 None:intergenic 35.0%
CGTATATGAAAGACGTGATT+CGG + tig0020661:12695-12714 Msa1384410:CDS 35.0%
ATTCGGTTATCGAATCGATT+AGG + tig0020661:12712-12731 Msa1384410:CDS 35.0%
!! AAGAAGTTGGTGATTTGAGA+AGG + tig0020661:12749-12768 Msa1384410:CDS 35.0%
!!! TTTGTTGGAAGCACTTTTGA+AGG + tig0020661:12799-12818 Msa1384410:CDS 35.0%
AATGGATAAGCTGTGGAATT+GGG - tig0020661:12114-12133 None:intergenic 35.0%
ACAAAGGTGAATTTGAGGAA+TGG - tig0020661:12132-12151 None:intergenic 35.0%
AGTGGAGTGAGATTTAACAA+AGG - tig0020661:12148-12167 None:intergenic 35.0%
!!! ATTTTAGGGTTTAAGGAGAG+TGG - tig0020661:12166-12185 None:intergenic 35.0%
CGTATATGAAAGACGTGATT+CGG + tig0020661:12695-12714 Msa1384410:CDS 35.0%
ATTCGGTTATCGAATCGATT+AGG + tig0020661:12712-12731 Msa1384410:CDS 35.0%
!! AAGAAGTTGGTGATTTGAGA+AGG + tig0020661:12749-12768 Msa1384410:CDS 35.0%
!!! TTTGTTGGAAGCACTTTTGA+AGG + tig0020661:12799-12818 Msa1384410:CDS 35.0%
GAATGGATAAGCTGTGGAAT+TGG - tig0020661:12115-12134 None:intergenic 40.0%
TTTGAGGAATGGATAAGCTG+TGG - tig0020661:12121-12140 None:intergenic 40.0%
GACTTCAGATAATCCGGTAA+CGG - tig0020661:12476-12495 None:intergenic 40.0%
! GTTACCGGATTATCTGAAGT+CGG + tig0020661:12475-12494 Msa1384410:CDS 40.0%
CGATTCTTCTTGATCTGCAA+AGG + tig0020661:12541-12560 Msa1384410:CDS 40.0%
GGAAAAGCAGAGAAAGAAGT+TGG + tig0020661:12736-12755 Msa1384410:CDS 40.0%
CAAAAAACGAAAACGGCGTT+GGG - tig0020661:12783-12802 None:intergenic 40.0%
ACAAAAAACGAAAACGGCGT+TGG - tig0020661:12784-12803 None:intergenic 40.0%
!!! ACGCCGTTTTCGTTTTTTGT+TGG + tig0020661:12784-12803 Msa1384410:CDS 40.0%
TTGCTGGAATTGGAAGATAC+TGG + tig0020661:12844-12863 Msa1384410:CDS 40.0%
ATACTGGTGCAAGATTGATG+AGG + tig0020661:12860-12879 Msa1384410:CDS 40.0%
TACTGGTGCAAGATTGATGA+GGG + tig0020661:12861-12880 Msa1384410:CDS 40.0%
TGCAAGATTGATGAGGGAAA+AGG + tig0020661:12867-12886 Msa1384410:CDS 40.0%
GATGAAGGAGAAGATGAAGA+TGG - tig0020661:12952-12971 None:intergenic 40.0%
GAATGGATAAGCTGTGGAAT+TGG - tig0020661:12115-12134 None:intergenic 40.0%
TTTGAGGAATGGATAAGCTG+TGG - tig0020661:12121-12140 None:intergenic 40.0%
GACTTCAGATAATCCGGTAA+CGG - tig0020661:12476-12495 None:intergenic 40.0%
! GTTACCGGATTATCTGAAGT+CGG + tig0020661:12475-12494 Msa1384410:CDS 40.0%
CGATTCTTCTTGATCTGCAA+AGG + tig0020661:12541-12560 Msa1384410:CDS 40.0%
GGAAAAGCAGAGAAAGAAGT+TGG + tig0020661:12736-12755 Msa1384410:CDS 40.0%
CAAAAAACGAAAACGGCGTT+GGG - tig0020661:12783-12802 None:intergenic 40.0%
ACAAAAAACGAAAACGGCGT+TGG - tig0020661:12784-12803 None:intergenic 40.0%
!!! ACGCCGTTTTCGTTTTTTGT+TGG + tig0020661:12784-12803 Msa1384410:CDS 40.0%
TTGCTGGAATTGGAAGATAC+TGG + tig0020661:12844-12863 Msa1384410:CDS 40.0%
ATACTGGTGCAAGATTGATG+AGG + tig0020661:12860-12879 Msa1384410:CDS 40.0%
TACTGGTGCAAGATTGATGA+GGG + tig0020661:12861-12880 Msa1384410:CDS 40.0%
TGCAAGATTGATGAGGGAAA+AGG + tig0020661:12867-12886 Msa1384410:CDS 40.0%
GATGAAGGAGAAGATGAAGA+TGG - tig0020661:12952-12971 None:intergenic 40.0%
TGGTGGAGAACATTCAGATG+CGG - tig0020661:12217-12236 None:intergenic 45.0%
GGAGAAGGGAGTTAGAGTTA+CGG - tig0020661:12249-12268 None:intergenic 45.0%
TAACTCCCTTCTCCGATGTT+CGG + tig0020661:12255-12274 Msa1384410:CDS 45.0%
GAAAAGAAGACGCCGAACAT+CGG - tig0020661:12270-12289 None:intergenic 45.0%
! ATGTTCGGCGTCTTCTTTTC+CGG + tig0020661:12270-12289 Msa1384410:CDS 45.0%
TCTGTTACATCGTCGGAGTT+GGG - tig0020661:12316-12335 None:intergenic 45.0%
TTCTGTTACATCGTCGGAGT+TGG - tig0020661:12317-12336 None:intergenic 45.0%
AGGGAGTTCTGTTACATCGT+CGG - tig0020661:12323-12342 None:intergenic 45.0%
GAAAGAGAACCAGAGGAAGA+GGG - tig0020661:12351-12370 None:intergenic 45.0%
GAAACTCGAAGATCTGGAGA+GGG - tig0020661:12387-12406 None:intergenic 45.0%
CTCCAAACCGATCTCAGATT+CGG + tig0020661:12433-12452 Msa1384410:CDS 45.0%
! GCAACCGACTTCAGATAATC+CGG - tig0020661:12482-12501 None:intergenic 45.0%
! TTATCTGAAGTCGGTTGCGT+CGG + tig0020661:12484-12503 Msa1384410:CDS 45.0%
ACGATTCCGTATCACGAAAG+TGG + tig0020661:12570-12589 Msa1384410:CDS 45.0%
TGCGAACCACTTTCGTGATA+CGG - tig0020661:12579-12598 None:intergenic 45.0%
CGGTTATCGAATCGATTAGG+TGG + tig0020661:12715-12734 Msa1384410:CDS 45.0%
!! AGCAAAGCTTGTTGCTCTCT+AGG - tig0020661:12829-12848 None:intergenic 45.0%
TAGAGAGCAACAAGCTTTGC+TGG + tig0020661:12828-12847 Msa1384410:CDS 45.0%
GCAACAAGCTTTGCTGGAAT+TGG + tig0020661:12834-12853 Msa1384410:CDS 45.0%
TGGTGGAGAACATTCAGATG+CGG - tig0020661:12217-12236 None:intergenic 45.0%
GGAGAAGGGAGTTAGAGTTA+CGG - tig0020661:12249-12268 None:intergenic 45.0%
TAACTCCCTTCTCCGATGTT+CGG + tig0020661:12255-12274 Msa1384410:CDS 45.0%
GAAAAGAAGACGCCGAACAT+CGG - tig0020661:12270-12289 None:intergenic 45.0%
! ATGTTCGGCGTCTTCTTTTC+CGG + tig0020661:12270-12289 Msa1384410:CDS 45.0%
TCTGTTACATCGTCGGAGTT+GGG - tig0020661:12316-12335 None:intergenic 45.0%
TTCTGTTACATCGTCGGAGT+TGG - tig0020661:12317-12336 None:intergenic 45.0%
AGGGAGTTCTGTTACATCGT+CGG - tig0020661:12323-12342 None:intergenic 45.0%
GAAAGAGAACCAGAGGAAGA+GGG - tig0020661:12351-12370 None:intergenic 45.0%
GAAACTCGAAGATCTGGAGA+GGG - tig0020661:12387-12406 None:intergenic 45.0%
CTCCAAACCGATCTCAGATT+CGG + tig0020661:12433-12452 Msa1384410:CDS 45.0%
! GCAACCGACTTCAGATAATC+CGG - tig0020661:12482-12501 None:intergenic 45.0%
! TTATCTGAAGTCGGTTGCGT+CGG + tig0020661:12484-12503 Msa1384410:CDS 45.0%
ACGATTCCGTATCACGAAAG+TGG + tig0020661:12570-12589 Msa1384410:CDS 45.0%
TGCGAACCACTTTCGTGATA+CGG - tig0020661:12579-12598 None:intergenic 45.0%
CGGTTATCGAATCGATTAGG+TGG + tig0020661:12715-12734 Msa1384410:CDS 45.0%
!! AGCAAAGCTTGTTGCTCTCT+AGG - tig0020661:12829-12848 None:intergenic 45.0%
TAGAGAGCAACAAGCTTTGC+TGG + tig0020661:12828-12847 Msa1384410:CDS 45.0%
GCAACAAGCTTTGCTGGAAT+TGG + tig0020661:12834-12853 Msa1384410:CDS 45.0%
TGGAGAACATTCAGATGCGG+CGG - tig0020661:12214-12233 None:intergenic 50.0%
GAAGGGAGTTAGAGTTACGG+CGG - tig0020661:12246-12265 None:intergenic 50.0%
CCAGAGGAAGAGGGAACAAA+GGG - tig0020661:12342-12361 None:intergenic 50.0%
ACCAGAGGAAGAGGGAACAA+AGG - tig0020661:12343-12362 None:intergenic 50.0%
GGAAAGAGAACCAGAGGAAG+AGG - tig0020661:12352-12371 None:intergenic 50.0%
!! CTTCCTCTGGTTCTCTTTCC+CGG + tig0020661:12352-12371 Msa1384410:CDS 50.0%
CGAAACTCGAAGATCTGGAG+AGG - tig0020661:12388-12407 None:intergenic 50.0%
GGTAGCGAAACTCGAAGATC+TGG - tig0020661:12393-12412 None:intergenic 50.0%
!! CGAATCTGAGATCGGTTTGG+AGG - tig0020661:12435-12454 None:intergenic 50.0%
! GATGACGCCGAATCTGAGAT+CGG - tig0020661:12443-12462 None:intergenic 50.0%
ATCTACAACGACGCCGTTAC+CGG + tig0020661:12460-12479 Msa1384410:CDS 50.0%
TCAACATCCACGTCAGCAGA+AGG - tig0020661:12652-12671 None:intergenic 50.0%
TCTGCTGACGTGGATGTTGA+CGG + tig0020661:12652-12671 Msa1384410:CDS 50.0%
TGACGTGGATGTTGACGGTT+TGG + tig0020661:12657-12676 Msa1384410:CDS 50.0%
TGGAGAACATTCAGATGCGG+CGG - tig0020661:12214-12233 None:intergenic 50.0%
GAAGGGAGTTAGAGTTACGG+CGG - tig0020661:12246-12265 None:intergenic 50.0%
CCAGAGGAAGAGGGAACAAA+GGG - tig0020661:12342-12361 None:intergenic 50.0%
ACCAGAGGAAGAGGGAACAA+AGG - tig0020661:12343-12362 None:intergenic 50.0%
GGAAAGAGAACCAGAGGAAG+AGG - tig0020661:12352-12371 None:intergenic 50.0%
!! CTTCCTCTGGTTCTCTTTCC+CGG + tig0020661:12352-12371 Msa1384410:CDS 50.0%
CGAAACTCGAAGATCTGGAG+AGG - tig0020661:12388-12407 None:intergenic 50.0%
GGTAGCGAAACTCGAAGATC+TGG - tig0020661:12393-12412 None:intergenic 50.0%
!! CGAATCTGAGATCGGTTTGG+AGG - tig0020661:12435-12454 None:intergenic 50.0%
! GATGACGCCGAATCTGAGAT+CGG - tig0020661:12443-12462 None:intergenic 50.0%
ATCTACAACGACGCCGTTAC+CGG + tig0020661:12460-12479 Msa1384410:CDS 50.0%
TCAACATCCACGTCAGCAGA+AGG - tig0020661:12652-12671 None:intergenic 50.0%
TCTGCTGACGTGGATGTTGA+CGG + tig0020661:12652-12671 Msa1384410:CDS 50.0%
TGACGTGGATGTTGACGGTT+TGG + tig0020661:12657-12676 Msa1384410:CDS 50.0%
AGAACATTCAGATGCGGCGG+CGG - tig0020661:12211-12230 None:intergenic 55.0%
AGACGCCGAACATCGGAGAA+GGG - tig0020661:12263-12282 None:intergenic 55.0%
AAGACGCCGAACATCGGAGA+AGG - tig0020661:12264-12283 None:intergenic 55.0%
GAGTTAGCGTGGTGCTTCTC+CGG - tig0020661:12292-12311 None:intergenic 55.0%
CCCTTTGTTCCCTCTTCCTC+TGG + tig0020661:12339-12358 Msa1384410:CDS 55.0%
ACTCGAAGATCTGGAGAGGG+AGG - tig0020661:12384-12403 None:intergenic 55.0%
! CGCCGAATCTGAGATCGGTT+TGG - tig0020661:12438-12457 None:intergenic 55.0%
ACCTTATCTCGTCGCTCGTG+TGG + tig0020661:12603-12622 Msa1384410:CDS 55.0%
ACCTTCACCTTCTGCTGACG+TGG + tig0020661:12642-12661 Msa1384410:CDS 55.0%
TCCACGTCAGCAGAAGGTGA+AGG - tig0020661:12646-12665 None:intergenic 55.0%
! TGTTGACGGTTTGGCGAACG+AGG + tig0020661:12666-12685 Msa1384410:CDS 55.0%
AGAACATTCAGATGCGGCGG+CGG - tig0020661:12211-12230 None:intergenic 55.0%
AGACGCCGAACATCGGAGAA+GGG - tig0020661:12263-12282 None:intergenic 55.0%
AAGACGCCGAACATCGGAGA+AGG - tig0020661:12264-12283 None:intergenic 55.0%
GAGTTAGCGTGGTGCTTCTC+CGG - tig0020661:12292-12311 None:intergenic 55.0%
CCCTTTGTTCCCTCTTCCTC+TGG + tig0020661:12339-12358 Msa1384410:CDS 55.0%
ACTCGAAGATCTGGAGAGGG+AGG - tig0020661:12384-12403 None:intergenic 55.0%
! CGCCGAATCTGAGATCGGTT+TGG - tig0020661:12438-12457 None:intergenic 55.0%
ACCTTATCTCGTCGCTCGTG+TGG + tig0020661:12603-12622 Msa1384410:CDS 55.0%
ACCTTCACCTTCTGCTGACG+TGG + tig0020661:12642-12661 Msa1384410:CDS 55.0%
TCCACGTCAGCAGAAGGTGA+AGG - tig0020661:12646-12665 None:intergenic 55.0%
! TGTTGACGGTTTGGCGAACG+AGG + tig0020661:12666-12685 Msa1384410:CDS 55.0%
TAGAGTTACGGCGGCGAGAG+TGG - tig0020661:12237-12256 None:intergenic 60.0%
CGGAGTTGGGAGAGTTAGCG+TGG - tig0020661:12303-12322 None:intergenic 60.0%
GCTCCGGGAAAGAGAACCAG+AGG - tig0020661:12358-12377 None:intergenic 60.0%
TGGAGAGGGAGGATTGCTCC+GGG - tig0020661:12373-12392 None:intergenic 60.0%
CTGGAGAGGGAGGATTGCTC+CGG - tig0020661:12374-12393 None:intergenic 60.0%
GGAGCGTGTGCATCATGACG+CGG - tig0020661:12414-12433 None:intergenic 60.0%
GCCACACGAGCGACGAGATA+AGG - tig0020661:12607-12626 None:intergenic 60.0%
! TGACGGTTTGGCGAACGAGG+TGG + tig0020661:12669-12688 Msa1384410:CDS 60.0%
TAGAGTTACGGCGGCGAGAG+TGG - tig0020661:12237-12256 None:intergenic 60.0%
CGGAGTTGGGAGAGTTAGCG+TGG - tig0020661:12303-12322 None:intergenic 60.0%
GCTCCGGGAAAGAGAACCAG+AGG - tig0020661:12358-12377 None:intergenic 60.0%
TGGAGAGGGAGGATTGCTCC+GGG - tig0020661:12373-12392 None:intergenic 60.0%
CTGGAGAGGGAGGATTGCTC+CGG - tig0020661:12374-12393 None:intergenic 60.0%
GGAGCGTGTGCATCATGACG+CGG - tig0020661:12414-12433 None:intergenic 60.0%
GCCACACGAGCGACGAGATA+AGG - tig0020661:12607-12626 None:intergenic 60.0%
! TGACGGTTTGGCGAACGAGG+TGG + tig0020661:12669-12688 Msa1384410:CDS 60.0%
TTCAGATGCGGCGGCGGAGT+AGG - tig0020661:12205-12224 None:intergenic 65.0%
AGTTACGGCGGCGAGAGTGG+TGG - tig0020661:12234-12253 None:intergenic 65.0%
ATCTCGTCGCTCGTGTGGCG+TGG + tig0020661:12608-12627 Msa1384410:CDS 65.0%
TTCAGATGCGGCGGCGGAGT+AGG - tig0020661:12205-12224 None:intergenic 65.0%
AGTTACGGCGGCGAGAGTGG+TGG - tig0020661:12234-12253 None:intergenic 65.0%
ATCTCGTCGCTCGTGTGGCG+TGG + tig0020661:12608-12627 Msa1384410:CDS 65.0%
! CGGCGGCGGAGTAGGTGTTG+AGG - tig0020661:12197-12216 None:intergenic 70.0%
! CGGCGGCGGAGTAGGTGTTG+AGG - tig0020661:12197-12216 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020661 gene 12103 12984 12103 ID=Msa1384410;Name=Msa1384410
tig0020661 mRNA 12103 12984 12103 ID=Msa1384410-mRNA-1;Parent=Msa1384410;Name=Msa1384410-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|293
tig0020661 exon 12103 12984 12103 ID=Msa1384410-mRNA-1:exon:9086;Parent=Msa1384410-mRNA-1
tig0020661 CDS 12103 12984 12103 ID=Msa1384410-mRNA-1:cds;Parent=Msa1384410-mRNA-1
Gene Sequence

>Msa1384410

ATGGCATTCCCAATTCCACAGCTTATCCATTCCTCAAATTCACCTTTGTTAAATCTCACTCCACTCTCCTTAAACCCTAAAATCTTTCAATCCTCAACACCTACTCCGCCGCCGCATCTGAATGTTCTCCACCACTCTCGCCGCCGTAACTCTAACTCCCTTCTCCGATGTTCGGCGTCTTCTTTTCCGGAGAAGCACCACGCTAACTCTCCCAACTCCGACGATGTAACAGAACTCCCTTTGTTCCCTCTTCCTCTGGTTCTCTTTCCCGGAGCAATCCTCCCTCTCCAGATCTTCGAGTTTCGCTACCGCGTCATGATGCACACGCTCCTCCAAACCGATCTCAGATTCGGCGTCATCTACAACGACGCCGTTACCGGATTATCTGAAGTCGGTTGCGTCGGAGAAGTAATCAAACACGAAAGACTCGTCGATGATCGATTCTTCTTGATCTGCAAAGGTCAAGAACGATTCCGTATCACGAAAGTGGTTCGCACGAAACCTTATCTCGTCGCTCGTGTGGCGTGGCTTGAAGATAGACCTTCACCTTCTGCTGACGTGGATGTTGACGGTTTGGCGAACGAGGTGGAGACGTATATGAAAGACGTGATTCGGTTATCGAATCGATTAGGTGGAAAAGCAGAGAAAGAAGTTGGTGATTTGAGAAGGAACTTATTCCCAACGCCGTTTTCGTTTTTTGTTGGAAGCACTTTTGAAGGTGCGCCTAGAGAGCAACAAGCTTTGCTGGAATTGGAAGATACTGGTGCAAGATTGATGAGGGAAAAGGAAACTTTGAAGAATACGCTTAATTATCTATCTGCTGCTTCTGCTGTTAAAGATGTTTTTCCATCTTCATCTTCTCCTTCATCACCATCATCATGA

Protein sequence

>Msa1384410

MAFPIPQLIHSSNSPLLNLTPLSLNPKIFQSSTPTPPPHLNVLHHSRRRNSNSLLRCSASSFPEKHHANSPNSDDVTELPLFPLPLVLFPGAILPLQIFEFRYRVMMHTLLQTDLRFGVIYNDAVTGLSEVGCVGEVIKHERLVDDRFFLICKGQERFRITKVVRTKPYLVARVAWLEDRPSPSADVDVDGLANEVETYMKDVIRLSNRLGGKAEKEVGDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTGARLMREKETLKNTLNYLSAASAVKDVFPSSSSPSSPSS*