AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514940 MtrunA17_Chr3g0123821 99.099 222 2 0 1 222 1 222 6.40e-166 456
Msa0514940 MtrunA17_Chr8g0381841 89.286 224 22 2 1 222 1 224 1.05e-149 415
Msa0514940 MtrunA17_Chr1g0174281 73.394 218 56 2 6 221 5 222 4.82e-116 330
Msa0514940 MtrunA17_Chr7g0231131 72.558 215 59 0 6 220 5 219 8.30e-115 327
Msa0514940 MtrunA17_Chr8g0346421 65.438 217 67 2 8 220 18 230 1.54e-96 281
Msa0514940 MtrunA17_Chr4g0032201 63.208 212 74 1 10 221 6 213 1.93e-95 277
Msa0514940 MtrunA17_Chr7g0275991 65.700 207 68 2 11 216 15 219 1.18e-94 276
Msa0514940 MtrunA17_Chr2g0276941 61.321 212 78 2 11 221 10 218 1.73e-92 270
Msa0514940 MtrunA17_Chr3g0112681 62.802 207 75 1 14 220 10 214 1.02e-91 268
Msa0514940 MtrunA17_Chr2g0315551 59.633 218 84 4 4 221 2 215 1.27e-90 265
Msa0514940 MtrunA17_Chr8g0351861 56.109 221 91 3 7 221 6 226 7.71e-90 264
Msa0514940 MtrunA17_Chr2g0319951 64.865 185 64 1 4 188 2 185 2.27e-88 259
Msa0514940 MtrunA17_Chr2g0283131 57.674 215 84 3 9 221 6 215 8.45e-87 256
Msa0514940 MtrunA17_Chr4g0046261 55.814 215 88 2 9 221 6 215 3.17e-86 254
Msa0514940 MtrunA17_Chr4g0040781 55.814 215 88 2 9 221 6 215 9.99e-86 253
Msa0514940 MtrunA17_Chr1g0189361 57.820 211 86 1 14 221 12 222 1.09e-85 253
Msa0514940 MtrunA17_Chr2g0325091 55.814 215 91 1 7 221 2 212 1.36e-85 252
Msa0514940 MtrunA17_Chr7g0214241 55.924 211 84 2 15 221 14 219 8.49e-83 245
Msa0514940 MtrunA17_Chr7g0234201 56.250 208 85 2 15 221 12 214 1.16e-79 237
Msa0514940 MtrunA17_Chr6g0482721 51.887 212 99 1 10 221 6 214 7.46e-75 225
Msa0514940 MtrunA17_Chr8g0392931 53.704 216 90 4 10 221 8 217 3.63e-73 221
Msa0514940 MtrunA17_Chr2g0290891 46.701 197 100 2 15 211 5 196 1.35e-61 191
Msa0514940 MtrunA17_Chr6g0458081 51.515 165 80 0 14 178 4 168 8.38e-60 187
Msa0514940 MtrunA17_Chr8g0335471 44.811 212 105 2 10 221 2 201 4.73e-59 184
Msa0514940 MtrunA17_Chr8g0349711 51.829 164 79 0 15 178 5 168 6.33e-59 184
Msa0514940 MtrunA17_Chr4g0055651 44.340 212 105 2 10 221 2 200 9.83e-59 184
Msa0514940 MtrunA17_Chr7g0250531 43.396 212 107 2 10 221 2 200 3.41e-57 180
Msa0514940 MtrunA17_Chr4g0030911 42.584 209 111 3 14 221 13 213 2.12e-56 178
Msa0514940 MtrunA17_Chr2g0276931 42.723 213 110 2 9 221 2 202 2.57e-56 177
Msa0514940 MtrunA17_Chr8g0349681 45.550 191 103 1 15 204 383 573 8.73e-55 184
Msa0514940 MtrunA17_Chr8g0349681 47.027 185 97 1 10 193 169 353 1.07e-51 176
Msa0514940 MtrunA17_Chr8g0349681 51.923 156 75 0 15 170 12 167 1.26e-50 172
Msa0514940 MtrunA17_Chr1g0182321 47.059 170 89 1 9 177 8 177 2.09e-54 173
Msa0514940 MtrunA17_Chr1g0212521 47.879 165 85 1 14 177 13 177 3.13e-54 172
Msa0514940 MtrunA17_Chr7g0263071 47.879 165 85 1 14 177 13 177 5.55e-54 172
Msa0514940 MtrunA17_Chr1g0182301 46.471 170 90 1 9 177 8 177 6.26e-54 172
Msa0514940 MtrunA17_Chr3g0109721 44.509 173 90 1 1 173 1 167 4.76e-49 159
Msa0514940 MtrunA17_Chr2g0327911 44.578 166 90 2 14 177 13 178 5.58e-49 159
Msa0514940 MtrunA17_Chr1g0199331 47.904 167 83 2 5 170 23 186 7.95e-49 158
Msa0514940 MtrunA17_Chr5g0433561 42.373 177 96 1 1 177 1 171 3.03e-47 154
Msa0514940 MtrunA17_Chr8g0390561 37.745 204 110 2 18 221 11 197 1.09e-46 153
Msa0514940 MtrunA17_Chr8g0384311 38.140 215 119 5 9 221 6 208 1.33e-46 153
Msa0514940 MtrunA17_Chr1g0159481 37.264 212 120 5 12 221 13 213 2.55e-44 147
Msa0514940 MtrunA17_Chr8g0382221 34.848 198 113 2 17 198 10 207 6.31e-43 144
Msa0514940 MtrunA17_Chr3g0130271 37.383 214 119 6 11 221 7 208 8.06e-43 143
Msa0514940 MtrunA17_Chr3g0123971 35.533 197 112 2 17 198 10 206 1.25e-42 143
Msa0514940 MtrunA17_Chr5g0400131 39.610 154 93 0 17 170 10 163 2.60e-42 142
Msa0514940 MtrunA17_Chr7g0265001 45.283 159 85 2 14 170 14 172 3.13e-42 142
Msa0514940 MtrunA17_Chr1g0197331 42.286 175 98 3 9 180 8 182 3.78e-41 139
Msa0514940 MtrunA17_Chr4g0055081 37.662 154 96 0 17 170 10 163 5.54e-41 139
Msa0514940 MtrunA17_Chr1g0180291 42.012 169 95 3 14 180 12 179 4.89e-40 136
Msa0514940 MtrunA17_Chr8g0383261 38.182 165 95 3 16 173 12 176 5.62e-35 123
Msa0514940 MtrunA17_Chr6g0466301 39.394 165 93 3 16 173 8 172 8.23e-35 122
Msa0514940 MtrunA17_Chr6g0465491 39.394 165 93 3 16 173 8 172 8.23e-35 122
Msa0514940 MtrunA17_Chr4g0034871 38.788 165 94 3 16 173 8 172 9.99e-35 122
Msa0514940 MtrunA17_Chr1g0201121 38.788 165 94 3 16 173 8 172 1.51e-34 122
Msa0514940 MtrunA17_Chr2g0331691 37.576 165 96 3 16 173 10 174 6.56e-33 118
Msa0514940 MtrunA17_Chr4g0004661 37.576 165 96 3 16 173 64 228 6.96e-32 117
Msa0514940 MtrunA17_Chr6g0466161 38.514 148 84 4 33 173 7 154 1.66e-26 101
Msa0514940 MtrunA17_Chr6g0465471 38.514 148 84 4 33 173 7 154 1.79e-26 101
Msa0514940 MtrunA17_Chr3g0138111 28.986 207 130 5 11 214 7 199 1.49e-23 94.0
Msa0514940 MtrunA17_Chr3g0138101 28.986 207 130 5 11 214 7 199 1.57e-23 94.0
Msa0514940 MtrunA17_Chr3g0138121 30.435 184 111 5 11 191 7 176 7.75e-23 92.0
Msa0514940 MtrunA17_Chr2g0325101 33.333 165 96 5 18 170 8 170 3.62e-21 87.0
Msa0514940 MtrunA17_Chr3g0117931 28.358 201 130 5 18 206 10 208 3.07e-20 85.1
Msa0514940 MtrunA17_Chr4g0046211 35.537 121 75 3 18 137 8 126 4.45e-20 82.8
Msa0514940 MtrunA17_Chr6g0486041 28.877 187 119 5 18 192 8 192 9.48e-20 83.6
Msa0514940 MtrunA17_Chr4g0037021 35.294 119 74 3 18 135 8 124 2.20e-18 79.7
Msa0514940 MtrunA17_Chr8g0371501 31.325 166 98 6 18 170 8 170 1.07e-17 78.2
Msa0514940 MtrunA17_Chr5g0405791 31.325 166 98 6 18 170 8 170 3.86e-17 76.6
Msa0514940 MtrunA17_Chr6g0466431 37.374 99 53 1 16 114 8 97 4.74e-17 73.6
Msa0514940 MtrunA17_Chr6g0465611 37.374 99 53 1 16 114 8 97 4.74e-17 73.6
Msa0514940 MtrunA17_Chr1g0178291 31.447 159 102 3 19 177 431 582 2.21e-15 74.3
Msa0514940 MtrunA17_Chr5g0443631 26.744 172 114 5 17 180 105 272 2.03e-13 67.8
Msa0514940 MtrunA17_Chr2g0331841 44.828 58 32 0 85 142 2 59 1.10e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514940 AT5G65270.1 84.685 222 32 2 2 221 3 224 3.95e-137 384
Msa0514940 AT4G39990.1 80.569 211 38 2 12 221 13 221 7.63e-126 355
Msa0514940 AT3G12160.1 75.463 216 52 1 6 221 5 219 2.14e-122 346
Msa0514940 AT5G47960.1 74.528 212 53 1 10 220 9 220 1.10e-114 327
Msa0514940 AT1G07410.1 61.321 212 77 1 10 221 6 212 4.34e-94 274
Msa0514940 AT1G09630.1 59.434 212 83 1 10 221 6 214 2.76e-93 272
Msa0514940 AT4G18800.1 61.009 218 78 3 4 221 2 212 3.09e-92 270
Msa0514940 AT5G45750.1 60.550 218 81 3 4 221 2 214 5.29e-90 264
Msa0514940 AT1G16920.1 59.633 218 83 3 4 221 2 214 1.33e-89 263
Msa0514940 AT3G46830.1 69.143 175 54 0 10 184 6 180 2.37e-89 262
Msa0514940 AT3G46830.2 69.143 175 54 0 10 184 6 180 2.37e-89 262
Msa0514940 AT5G59150.1 69.540 174 53 0 11 184 7 180 1.47e-88 260
Msa0514940 AT4G18430.1 56.744 215 86 2 9 221 6 215 1.52e-88 260
Msa0514940 AT2G33870.1 57.674 215 85 2 9 221 6 216 3.73e-88 259
Msa0514940 AT5G47520.1 56.422 218 95 0 4 221 2 219 5.36e-88 259
Msa0514940 AT1G28550.1 58.605 215 83 2 9 221 6 216 1.58e-87 258
Msa0514940 AT1G01200.1 60.369 217 75 5 11 220 23 235 9.78e-87 256
Msa0514940 AT5G60860.1 57.674 215 84 3 9 221 6 215 1.75e-86 255
Msa0514940 AT1G06400.1 57.991 219 85 3 4 221 2 214 2.25e-86 255
Msa0514940 AT3G15060.1 56.744 215 86 3 9 221 6 215 6.51e-85 251
Msa0514940 AT1G05810.1 63.636 176 64 0 14 189 10 185 2.54e-82 244
Msa0514940 AT1G05810.2 63.636 176 64 0 14 189 56 231 3.12e-82 246
Msa0514940 AT2G43130.1 54.808 208 89 1 14 221 10 212 5.84e-81 241
Msa0514940 AT2G31680.1 61.364 176 68 0 14 189 10 185 3.43e-80 239
Msa0514940 AT3G07410.1 63.068 176 65 0 14 189 10 185 8.15e-79 236
Msa0514940 AT1G73640.1 50.893 224 97 4 11 221 8 231 1.82e-73 223
Msa0514940 AT1G18200.1 50.467 214 99 3 1 214 1 207 5.87e-73 221
Msa0514940 AT4G17170.1 44.550 211 108 3 15 221 5 210 6.02e-62 192
Msa0514940 AT5G59150.2 70.400 125 37 0 60 184 5 129 9.18e-62 191
Msa0514940 AT4G35860.1 44.498 209 113 2 14 221 4 210 1.94e-60 189
Msa0514940 AT4G17160.1 44.340 212 101 3 15 221 5 204 5.39e-60 187
Msa0514940 AT1G02130.1 45.283 212 104 2 10 221 2 201 6.09e-60 187
Msa0514940 AT5G47200.1 44.811 212 104 2 10 221 2 200 1.30e-57 181
Msa0514940 AT4G17530.1 44.811 212 104 2 10 221 2 200 1.44e-57 181
Msa0514940 AT3G11730.1 48.603 179 85 3 14 191 6 178 2.11e-55 176
Msa0514940 AT3G46060.2 41.627 209 114 3 14 221 13 214 2.59e-54 173
Msa0514940 AT3G46060.3 41.627 209 114 3 14 221 13 214 2.59e-54 173
Msa0514940 AT3G46060.1 41.627 209 114 3 14 221 13 214 2.59e-54 173
Msa0514940 AT5G59840.1 41.627 209 114 3 14 221 13 214 2.61e-54 173
Msa0514940 AT5G03520.1 42.056 214 115 3 9 221 8 213 3.54e-53 170
Msa0514940 AT3G53610.2 42.584 209 112 4 14 221 13 214 7.57e-53 169
Msa0514940 AT3G53610.3 42.584 209 112 4 14 221 13 214 7.57e-53 169
Msa0514940 AT3G53610.1 42.584 209 112 4 14 221 13 214 7.57e-53 169
Msa0514940 AT3G09900.1 41.589 214 118 3 9 221 8 215 1.03e-52 169
Msa0514940 AT3G54840.2 51.948 154 73 1 18 170 35 188 1.42e-51 166
Msa0514940 AT3G54840.1 51.948 154 73 1 18 170 35 188 1.97e-51 166
Msa0514940 AT3G54840.3 51.634 153 73 1 19 170 2 154 6.66e-51 163
Msa0514940 AT4G19640.1 37.557 221 116 3 1 221 1 199 5.94e-48 156
Msa0514940 AT1G43890.3 41.232 211 109 6 5 212 2 200 1.34e-46 153
Msa0514940 AT1G43890.1 41.232 211 109 6 5 212 2 200 1.34e-46 153
Msa0514940 AT1G43890.2 41.232 211 109 6 5 212 2 200 1.34e-46 153
Msa0514940 AT5G45130.1 42.775 173 93 1 1 173 1 167 7.00e-46 151
Msa0514940 AT4G35860.2 42.683 164 93 1 58 221 2 164 1.75e-45 149
Msa0514940 AT5G45130.2 44.156 154 86 0 20 173 22 175 6.84e-44 146
Msa0514940 AT2G22290.1 40.260 154 92 0 17 170 10 163 4.86e-43 144
Msa0514940 AT5G10260.1 38.961 154 94 0 17 170 10 163 6.43e-42 141
Msa0514940 AT2G44610.1 38.312 154 95 0 17 170 10 163 3.52e-41 139
Msa0514940 AT5G03520.2 40.698 172 93 3 51 221 40 203 4.46e-41 139
Msa0514940 AT4G39890.1 38.065 155 95 1 17 170 10 164 5.40e-41 139
Msa0514940 AT5G03530.2 35.586 222 124 5 5 221 2 209 1.85e-39 135
Msa0514940 AT5G03530.1 35.586 222 124 5 5 221 2 209 1.85e-39 135
Msa0514940 AT5G64990.1 35.404 161 104 0 17 177 8 168 4.73e-37 129
Msa0514940 AT4G19640.3 37.500 176 103 2 1 176 1 169 6.04e-37 128
Msa0514940 AT4G19640.2 42.958 142 75 2 1 142 1 136 4.29e-36 124
Msa0514940 AT1G22740.1 39.394 165 93 3 16 173 8 172 3.62e-35 124
Msa0514940 AT2G21880.1 39.394 165 93 3 16 173 9 173 4.65e-35 124
Msa0514940 AT3G18820.1 39.394 165 93 3 16 173 8 172 1.78e-34 122
Msa0514940 AT4G09720.1 40.000 165 92 3 16 173 8 172 2.28e-34 122
Msa0514940 AT5G64990.2 33.929 168 104 1 17 177 8 175 2.60e-34 122
Msa0514940 AT1G52280.1 37.647 170 99 3 16 178 8 177 3.78e-34 121
Msa0514940 AT1G49300.2 38.323 167 96 3 16 175 8 174 1.37e-33 120
Msa0514940 AT1G49300.1 38.323 167 96 3 16 175 8 174 1.37e-33 120
Msa0514940 AT4G09720.4 38.824 170 92 3 16 173 8 177 1.61e-33 120
Msa0514940 AT5G46025.1 54.286 105 47 1 78 181 6 110 4.20e-33 115
Msa0514940 AT4G09720.3 37.500 176 92 3 16 173 8 183 1.74e-32 117
Msa0514940 AT3G16100.1 36.970 165 97 3 16 173 8 172 1.14e-31 115
Msa0514940 AT3G09910.3 37.079 178 109 3 5 180 2 178 1.67e-31 114
Msa0514940 AT3G09910.1 37.079 178 109 3 5 180 2 178 1.67e-31 114
Msa0514940 AT3G09910.2 37.079 178 109 3 5 180 2 178 1.67e-31 114
Msa0514940 AT3G09910.5 40.252 159 92 3 14 170 11 168 5.31e-31 113
Msa0514940 AT3G09910.4 40.252 159 92 3 14 170 11 168 5.31e-31 113
Msa0514940 AT5G39620.1 32.075 212 124 5 17 221 6 204 2.57e-30 111
Msa0514940 AT2G21880.4 38.514 148 84 3 33 173 1 148 1.45e-27 103
Msa0514940 AT2G21880.3 38.514 148 84 3 33 173 1 148 1.45e-27 103
Msa0514940 AT5G55080.1 31.548 168 111 3 11 177 7 171 9.41e-26 100
Msa0514940 AT4G09720.6 41.481 135 72 3 46 173 4 138 1.50e-25 98.2
Msa0514940 AT4G09720.5 41.481 135 72 3 46 173 4 138 1.50e-25 98.2
Msa0514940 AT4G09720.2 41.481 135 72 3 46 173 4 138 1.50e-25 98.2
Msa0514940 AT2G21880.2 34.545 165 93 4 16 173 9 165 3.46e-25 98.2
Msa0514940 AT2G44690.1 35.758 165 92 5 18 170 20 182 1.98e-24 96.3
Msa0514940 AT5G20020.1 29.126 206 129 5 11 213 7 198 4.97e-23 93.2
Msa0514940 AT5G20010.1 30.435 184 111 5 11 191 7 176 6.27e-23 92.8
Msa0514940 AT5G55190.1 29.126 206 129 5 11 213 7 198 1.07e-22 92.0
Msa0514940 AT3G48040.1 32.121 165 98 5 18 170 10 172 1.17e-19 84.0
Msa0514940 AT1G20090.1 32.727 165 97 6 18 170 7 169 3.26e-19 82.4
Msa0514940 AT5G45970.1 31.361 169 102 5 18 174 8 174 3.89e-19 82.4
Msa0514940 AT1G75840.1 32.121 165 98 6 18 170 8 170 4.80e-19 82.0
Msa0514940 AT4G35020.1 32.168 143 87 4 18 159 8 141 5.01e-19 82.0
Msa0514940 AT4G35020.2 32.168 143 87 4 18 159 8 141 5.01e-19 82.0
Msa0514940 AT4G35020.3 32.168 143 87 4 18 159 8 141 5.01e-19 82.0
Msa0514940 AT5G62880.1 30.233 172 106 5 18 177 10 179 6.87e-19 82.0
Msa0514940 AT3G48040.2 36.364 121 74 3 18 137 10 128 4.24e-18 79.0
Msa0514940 AT3G51300.1 30.909 165 100 6 18 170 8 170 4.42e-18 79.3
Msa0514940 AT5G62880.2 34.711 121 76 3 18 137 10 128 1.61e-17 77.8
Msa0514940 AT4G28950.1 27.374 179 118 4 18 186 8 184 1.74e-17 78.2
Msa0514940 AT2G17800.2 30.909 165 100 6 18 170 8 170 2.16e-17 77.4
Msa0514940 AT2G17800.1 30.909 165 100 6 18 170 8 170 2.16e-17 77.4
Msa0514940 AT4G35950.1 30.909 165 100 6 18 170 8 170 3.18e-17 77.0
Msa0514940 AT4G08190.1 59.375 64 23 1 107 170 67 127 3.34e-17 75.1
Msa0514940 AT4G35020.4 33.333 114 73 3 18 130 8 119 2.65e-16 73.6
Msa0514940 AT4G35020.5 33.333 114 73 3 18 130 8 119 2.65e-16 73.6
Msa0514940 AT3G22950.1 29.167 120 79 3 17 135 18 132 4.83e-11 60.1
Msa0514940 AT3G22950.2 29.167 120 79 3 17 135 18 132 4.83e-11 60.1

Find 76 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCTATATTAGGCTATT+TGG 0.161280 3_4:+65919875 None:intergenic
TGACAACACATGCTCTTCTT+AGG 0.168776 3_4:+65920147 None:intergenic
TTAATTAGCGGGTTTGAATT+TGG 0.271621 3_4:+65923347 None:intergenic
AATATAGTCATCATTCTTAT+AGG 0.279237 3_4:-65920429 Msa0514940:CDS
CCTGGCTGCTGATGAGAATC+AGG 0.310405 3_4:-65920235 Msa0514940:CDS
ATAATCAACCTCTCTATATT+AGG 0.319121 3_4:+65919867 None:intergenic
CTCTGGTATCAGTAATATAA+TGG 0.325188 3_4:+65919800 None:intergenic
ATAGGTAGCCTGATTGGAAT+TGG 0.345742 3_4:-65919927 Msa0514940:three_prime_UTR
CATACTACAGGGGCGCTGTT+GGG 0.366375 3_4:-65920539 Msa0514940:CDS
AGAAAGAAGAGAACCGTTCT+TGG 0.377427 3_4:+65923053 None:intergenic
GTGATCGAAGCTCGGACGTT+TGG 0.386754 3_4:+65920494 None:intergenic
ATGTAAATATACACGGGAAA+TGG 0.392454 3_4:+65920041 None:intergenic
GGCAAGAAGATTATTGTTCC+TGG 0.407195 3_4:-65920186 Msa0514940:CDS
AATTTCATAGGTAGCCTGAT+TGG 0.411337 3_4:-65919933 Msa0514940:three_prime_UTR
GACAACACATGCTCTTCTTA+GGG 0.416162 3_4:+65920148 None:intergenic
TTTGAATTTGGTTTGAAAAG+TGG 0.418073 3_4:+65923359 None:intergenic
AGAGTGTTAAGGCTCAGATC+TGG 0.425788 3_4:-65923087 Msa0514940:CDS
GGGCGCTGTTGGGGCAATGT+TGG 0.427779 3_4:-65920529 Msa0514940:CDS
CCTGATTCTCATCAGCAGCC+AGG 0.437809 3_4:+65920235 None:intergenic
TTCTTAGGGATTTCTTGTGC+AGG 0.438762 3_4:+65920162 None:intergenic
TGAGTTTCAAACTCGTACTT+TGG 0.440485 3_4:-65923122 Msa0514940:CDS
GAAGATAGACTACGTCTTCA+AGG 0.447575 3_4:-65923242 Msa0514940:CDS
GCATACTACAGGGGCGCTGT+TGG 0.449830 3_4:-65920540 Msa0514940:CDS
TGAAGACGTAGTCTATCTTC+TGG 0.451825 3_4:+65923245 None:intergenic
ACAAGCGCTACTAATTTCAT+AGG 0.455963 3_4:-65919945 Msa0514940:three_prime_UTR
CGCAGTTCTTCTAACCATCT+AGG 0.458553 3_4:+65920468 None:intergenic
GTTTAATTTACTAGATTCCA+TGG 0.478421 3_4:-65920099 Msa0514940:three_prime_UTR
AGGAACAATAATCTTCTTGC+CGG 0.480386 3_4:+65920188 None:intergenic
TGGAGATTAGTTTAATTAGC+GGG 0.481023 3_4:+65923336 None:intergenic
ACAATGTTCCAATTCCAATC+AGG 0.483149 3_4:+65919919 None:intergenic
AAAGAATTTGCGGAGAAAGA+AGG 0.487634 3_4:-65920357 Msa0514940:CDS
GCTGATGAGAATCAGGGAAA+TGG 0.488775 3_4:-65920228 Msa0514940:CDS
GGCATCTCAGCATCTCTGTC+CGG 0.488883 3_4:-65920207 Msa0514940:CDS
TATTGAACATAAGAGTGTTA+AGG 0.489565 3_4:-65923098 Msa0514940:CDS
CAGTTACAAGTGCATACTAC+AGG 0.490649 3_4:-65920551 Msa0514940:CDS
AGCATGTGTTGTCAGTAATC+CGG 0.495819 3_4:-65920138 Msa0514940:exon
GCTTCGATCACATACCTAGA+TGG 0.498381 3_4:-65920482 Msa0514940:CDS
ATTACCTCCGACTCCATCTC+AGG 0.499272 3_4:+65919983 None:intergenic
GGGATTTCTTGTGCAGGACC+AGG 0.502312 3_4:+65920168 None:intergenic
TGTTGATTTAAGACCTGAGA+TGG 0.509875 3_4:-65919996 Msa0514940:three_prime_UTR
TGGTGGAAGAATATCTCCTC+TGG 0.518121 3_4:+65919783 None:intergenic
TTAATCGGTGATTCCGCCGT+TGG 0.519747 3_4:-65923214 Msa0514940:CDS
ATACTACAGGGGCGCTGTTG+GGG 0.525539 3_4:-65920538 Msa0514940:CDS
GCTCAGATCTGGGACACTGC+TGG 0.529753 3_4:-65923076 Msa0514940:CDS
AGAGGATGCAAAAGAATTTG+CGG 0.531636 3_4:-65920367 Msa0514940:CDS
GAGTGTTAAGGCTCAGATCT+GGG 0.538288 3_4:-65923086 Msa0514940:CDS
GCAAGAACAATGGCGAGTGC+AGG 0.539693 3_4:-65923283 Msa0514940:exon
TTCTGTCAAAACAGTCATGA+AGG 0.542515 3_4:+65920284 None:intergenic
ACAATGGCGAGTGCAGGTTA+CGG 0.545612 3_4:-65923277 Msa0514940:CDS
GTGGAGATTAGTTTAATTAG+CGG 0.554778 3_4:+65923335 None:intergenic
ATGGCCAAACCATCAAAACT+TGG 0.558491 3_4:+65920060 None:intergenic
GTGGACTCAAAAGCTACAAT+CGG 0.568023 3_4:-65923148 Msa0514940:CDS
CATTGTCAACAAGAAGAACC+TGG 0.569186 3_4:-65920253 Msa0514940:CDS
GGGACACTGCTGGCCAAGAA+CGG 0.580774 3_4:-65923066 Msa0514940:intron
AGGAAACAAAAGTGATCTTG+AGG 0.580983 3_4:-65920409 Msa0514940:CDS
CTAGGTATGTGATCGAAGCT+CGG 0.584273 3_4:+65920486 None:intergenic
GAAAATCTCAGATACTAGCT+CGG 0.589018 3_4:-65923192 Msa0514940:CDS
GGCTCAAGGAGAGACGCACT+TGG 0.591839 3_4:+65919763 None:intergenic
TCAAGGAGAGACGCACTTGG+TGG 0.595991 3_4:+65919766 None:intergenic
TTGAATGATGTAAATATACA+CGG 0.596315 3_4:+65920034 None:intergenic
TGAATGATGTAAATATACAC+GGG 0.603917 3_4:+65920035 None:intergenic
AGTTACAAGTGCATACTACA+GGG 0.605565 3_4:-65920550 Msa0514940:CDS
TTTAAGACCTGAGATGGAGT+CGG 0.620598 3_4:-65919990 Msa0514940:three_prime_UTR
CTGGCTGCTGATGAGAATCA+GGG 0.625486 3_4:-65920234 Msa0514940:CDS
CCAAATAGCCTAATATAGAG+AGG 0.634926 3_4:-65919875 Msa0514940:three_prime_UTR
TGACTATATTCTTGTCAGCA+TGG 0.639191 3_4:+65920442 None:intergenic
GAAATCAAAAGCAAGAACAA+TGG 0.640264 3_4:-65923293 Msa0514940:exon
ATTAGTTGCTTGCAGCGCAG+AGG 0.640396 3_4:+65920317 None:intergenic
GCAAGCAACTAATGTTGAGA+CGG 0.646912 3_4:-65920307 Msa0514940:CDS
AAGACCTGAGATGGAGTCGG+AGG 0.667296 3_4:-65919987 Msa0514940:three_prime_UTR
GTCATACGAACATAGAACCA+TGG 0.670149 3_4:+65920082 None:intergenic
TGCAAGAAACGACTTCAGCG+TGG 0.696247 3_4:-65923167 Msa0514940:CDS
GTTACAAGTGCATACTACAG+GGG 0.696627 3_4:-65920549 Msa0514940:CDS
CATTATATTACTGATACCAG+AGG 0.697861 3_4:-65919799 Msa0514940:three_prime_UTR
GCAGCGTGCAGTACCCACAG+AGG 0.703658 3_4:-65920385 Msa0514940:CDS
GATAGACTACGTCTTCAAGG+TGG 0.714276 3_4:-65923239 Msa0514940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTAAATT+CGG + chr3_4:65920719-65920738 None:intergenic 0.0%
!!! AATTATATCAAATTTAAAAC+TGG + chr3_4:65921148-65921167 None:intergenic 10.0%
!! TTATTCCTCAATAAAAAAAT+TGG + chr3_4:65920356-65920375 None:intergenic 15.0%
!!! ACTGTTGATAAATAAATATT+TGG + chr3_4:65921754-65921773 None:intergenic 15.0%
!! TGTACTTGTAATTTAAATAT+TGG + chr3_4:65922503-65922522 None:intergenic 15.0%
!!! GTTTATTTATCTGAAGTTAA+TGG - chr3_4:65920242-65920261 Msa0514940:CDS 20.0%
!! AAAAAAATCTAGTATGTGAA+TGG - chr3_4:65920731-65920750 Msa0514940:intron 20.0%
!!! ATGATTTTTATTTCAAAGAG+TGG + chr3_4:65922242-65922261 None:intergenic 20.0%
!!! ATTTTCAAAATCAGCAATTT+TGG - chr3_4:65922314-65922333 Msa0514940:intron 20.0%
!!! GTTTTGTACTATTTTTTCTA+CGG - chr3_4:65922427-65922446 Msa0514940:intron 20.0%
!!! GTTTTGTCTGATTTTATAAA+TGG - chr3_4:65922539-65922558 Msa0514940:intron 20.0%
!! AATATAGTCATCATTCTTAT+AGG - chr3_4:65922706-65922725 Msa0514940:intron 20.0%
!!! AACATTTTATAAATGAACTC+CGG + chr3_4:65923019-65923038 None:intergenic 20.0%
!! TTGAATGATGTAAATATACA+CGG + chr3_4:65923104-65923123 None:intergenic 20.0%
!!! TTTGAATTTGGTTTGAAAAG+TGG + chr3_4:65919779-65919798 None:intergenic 25.0%
!!! TATTGAACATAAGAGTGTTA+AGG - chr3_4:65920037-65920056 Msa0514940:three_prime_UTR 25.0%
!!! CAACACCAATTTTTTTATTG+AGG - chr3_4:65920348-65920367 Msa0514940:CDS 25.0%
! ACATCAGTCAAATTAATTCA+AGG - chr3_4:65920399-65920418 Msa0514940:CDS 25.0%
!!! TTGTTTATTGTTTTTGCCTA+TGG - chr3_4:65920547-65920566 Msa0514940:CDS 25.0%
! TATGTGAATTAACCCATTTA+GGG - chr3_4:65920668-65920687 Msa0514940:intron 25.0%
! CAGATTTATGAAATTTACGA+GGG - chr3_4:65920771-65920790 Msa0514940:intron 25.0%
! AGATTTATGAAATTTACGAG+GGG - chr3_4:65920772-65920791 Msa0514940:intron 25.0%
!! TGATTTTACCATAAGTTCAA+AGG + chr3_4:65920980-65920999 None:intergenic 25.0%
!!! ACCATATTTTGATTTGAAAC+CGG + chr3_4:65921004-65921023 None:intergenic 25.0%
!!! ATGTATTGACTGATTTCAAT+TGG - chr3_4:65921079-65921098 Msa0514940:intron 25.0%
!! TCAAATTTAAAACTGGAATG+TGG + chr3_4:65921141-65921160 None:intergenic 25.0%
! TGATTATTTATAGAGCAGTT+AGG - chr3_4:65921328-65921347 Msa0514940:intron 25.0%
! TAATAGTTGTAAAGAGAAGA+AGG - chr3_4:65921455-65921474 Msa0514940:intron 25.0%
! GAACCAAATCATTTATTCAT+GGG + chr3_4:65921637-65921656 None:intergenic 25.0%
!! ACCTTTTGTACATATTAACA+GGG + chr3_4:65922176-65922195 None:intergenic 25.0%
!! AACCTTTTGTACATATTAAC+AGG + chr3_4:65922177-65922196 None:intergenic 25.0%
!! TATCAATAACACGTTTTCAA+AGG + chr3_4:65922291-65922310 None:intergenic 25.0%
! TTGGTTGAGTAAAAAAACAT+GGG + chr3_4:65922389-65922408 None:intergenic 25.0%
! ATTGGTTGAGTAAAAAAACA+TGG + chr3_4:65922390-65922409 None:intergenic 25.0%
! TAAATTACAAGTACATCGAA+TGG - chr3_4:65922508-65922527 Msa0514940:intron 25.0%
!! GTTTAATTTACTAGATTCCA+TGG - chr3_4:65923036-65923055 Msa0514940:intron 25.0%
! TGAATGATGTAAATATACAC+GGG + chr3_4:65923103-65923122 None:intergenic 25.0%
! ATAATCAACCTCTCTATATT+AGG + chr3_4:65923271-65923290 None:intergenic 25.0%
!! TTAATTAGCGGGTTTGAATT+TGG + chr3_4:65919791-65919810 None:intergenic 30.0%
!! TGGAGATTAGTTTAATTAGC+GGG + chr3_4:65919802-65919821 None:intergenic 30.0%
!! GTGGAGATTAGTTTAATTAG+CGG + chr3_4:65919803-65919822 None:intergenic 30.0%
!! TTGGTTTTCGATTTTGAATG+TGG + chr3_4:65919822-65919841 None:intergenic 30.0%
!!! TGTTCTTGCTTTTGATTTCT+TGG + chr3_4:65919841-65919860 None:intergenic 30.0%
GAAATCAAAAGCAAGAACAA+TGG - chr3_4:65919842-65919861 Msa0514940:three_prime_UTR 30.0%
!! TAGTATCTGAGATTTTCCAA+CGG + chr3_4:65919940-65919959 None:intergenic 30.0%
GTGTCAAACAAATTCAAGAT+TGG + chr3_4:65920451-65920470 None:intergenic 30.0%
! TTTTTGCCTATGGTTTCTTT+GGG - chr3_4:65920557-65920576 Msa0514940:CDS 30.0%
GTATGTGAATTAACCCATTT+AGG - chr3_4:65920667-65920686 Msa0514940:intron 30.0%
GCAGATTTATGAAATTTACG+AGG - chr3_4:65920770-65920789 Msa0514940:intron 30.0%
TCCATATAGTATGCTAATAG+TGG - chr3_4:65920915-65920934 Msa0514940:intron 30.0%
ACCACTATTAGCATACTATA+TGG + chr3_4:65920919-65920938 None:intergenic 30.0%
CAATGATTCCTTTGAACTTA+TGG - chr3_4:65920969-65920988 Msa0514940:intron 30.0%
GAACTTATGGTAAAATCATC+CGG - chr3_4:65920982-65921001 Msa0514940:intron 30.0%
TCCGGTTTCAAATCAAAATA+TGG - chr3_4:65921000-65921019 Msa0514940:intron 30.0%
GTTATATAAGTCCACAGATT+TGG + chr3_4:65921105-65921124 None:intergenic 30.0%
TGTTCATATACATAGTGTGT+TGG + chr3_4:65921189-65921208 None:intergenic 30.0%
! TATGTTGCTTAAACAAAGCT+GGG - chr3_4:65921489-65921508 Msa0514940:intron 30.0%
GGAACCAAATCATTTATTCA+TGG + chr3_4:65921638-65921657 None:intergenic 30.0%
! ACTTTACTGATTACTCACTT+TGG + chr3_4:65921662-65921681 None:intergenic 30.0%
CAGTAAAGTGAGAAAATCAA+TGG - chr3_4:65921673-65921692 Msa0514940:intron 30.0%
! AGCAAGTATCTGTTACTTAA+GGG + chr3_4:65921996-65922015 None:intergenic 30.0%
AAATACTTGTAGGGAGAAAT+GGG + chr3_4:65922037-65922056 None:intergenic 30.0%
ACCCTGTTAATATGTACAAA+AGG - chr3_4:65922172-65922191 Msa0514940:intron 30.0%
!! GCTGATTATTTTTCTGTCTT+GGG - chr3_4:65922336-65922355 Msa0514940:intron 30.0%
TACTTCTGATCATTTCATCA+TGG - chr3_4:65922475-65922494 Msa0514940:intron 30.0%
ATGTAAATATACACGGGAAA+TGG + chr3_4:65923097-65923116 None:intergenic 30.0%
CTCTGGTATCAGTAATATAA+TGG + chr3_4:65923338-65923357 None:intergenic 30.0%
CATTATATTACTGATACCAG+AGG - chr3_4:65923336-65923355 Msa0514940:five_prime_UTR 30.0%
!!! GTCTTCAAGGTGGTTTTAAT+CGG - chr3_4:65919906-65919925 Msa0514940:three_prime_UTR 35.0%
GAAAATCTCAGATACTAGCT+CGG - chr3_4:65919943-65919962 Msa0514940:three_prime_UTR 35.0%
TGAGTTTCAAACTCGTACTT+TGG - chr3_4:65920013-65920032 Msa0514940:three_prime_UTR 35.0%
! GTTTTTGCCTATGGTTTCTT+TGG - chr3_4:65920556-65920575 Msa0514940:CDS 35.0%
CGCAGGATTTAAGTAAGAAA+AGG - chr3_4:65920615-65920634 Msa0514940:intron 35.0%
! TGAATTAACCCATTTAGGGT+TGG - chr3_4:65920672-65920691 Msa0514940:intron 35.0%
CAGTTTGCATGCTCTTTAAT+CGG - chr3_4:65920843-65920862 Msa0514940:intron 35.0%
GTTCAAAGGAATCATTGCTA+AGG + chr3_4:65920966-65920985 None:intergenic 35.0%
ATTTCAATTGGCCAAATCTG+TGG - chr3_4:65921091-65921110 Msa0514940:intron 35.0%
!! TGTTGGTAGCATTTCTAACA+TGG + chr3_4:65921172-65921191 None:intergenic 35.0%
ATTTACTTGAATGACACGTG+TGG - chr3_4:65921275-65921294 Msa0514940:intron 35.0%
! ACATTGATGGGAAATGGATT+TGG - chr3_4:65921354-65921373 Msa0514940:intron 35.0%
ATTTGGAAGTTGGGAGAAAA+TGG - chr3_4:65921371-65921390 Msa0514940:intron 35.0%
TTTGGAAGTTGGGAGAAAAT+GGG - chr3_4:65921372-65921391 Msa0514940:intron 35.0%
! GTATGTTGCTTAAACAAAGC+TGG - chr3_4:65921488-65921507 Msa0514940:intron 35.0%
TAGGAGTTACTGAGATTTCA+GGG - chr3_4:65921577-65921596 Msa0514940:intron 35.0%
CAGCCCATGAATAAATGATT+TGG - chr3_4:65921631-65921650 Msa0514940:intron 35.0%
! TTACTGATTACTCACTTTGG+AGG + chr3_4:65921659-65921678 None:intergenic 35.0%
GCACATGCATGATAAATCAT+GGG + chr3_4:65921714-65921733 None:intergenic 35.0%
TGCACATGCATGATAAATCA+TGG + chr3_4:65921715-65921734 None:intergenic 35.0%
CTCTAATTTATTGCTGGATC+AGG + chr3_4:65921826-65921845 None:intergenic 35.0%
GCAAGACTCTAATTTATTGC+TGG + chr3_4:65921832-65921851 None:intergenic 35.0%
TTACTTAAGGGAGTTAGAGT+TGG + chr3_4:65921984-65922003 None:intergenic 35.0%
! GAGCAAGTATCTGTTACTTA+AGG + chr3_4:65921997-65922016 None:intergenic 35.0%
GAAATACTTGTAGGGAGAAA+TGG + chr3_4:65922038-65922057 None:intergenic 35.0%
CCAGAAAGGAAATACTTGTA+GGG + chr3_4:65922046-65922065 None:intergenic 35.0%
ATTCTGTGATACTAGCATAC+TGG + chr3_4:65922132-65922151 None:intergenic 35.0%
!! GGCTGATTATTTTTCTGTCT+TGG - chr3_4:65922335-65922354 Msa0514940:intron 35.0%
TCAACCAATGTTCTTCAATC+TGG - chr3_4:65922401-65922420 Msa0514940:intron 35.0%
AGTTACAAGTGCATACTACA+GGG - chr3_4:65922585-65922604 Msa0514940:intron 35.0%
TGACTATATTCTTGTCAGCA+TGG + chr3_4:65922696-65922715 None:intergenic 35.0%
AGGAAACAAAAGTGATCTTG+AGG - chr3_4:65922726-65922745 Msa0514940:intron 35.0%
! AATTCTTTTGCATCCTCTGT+GGG + chr3_4:65922766-65922785 None:intergenic 35.0%
! AAATTCTTTTGCATCCTCTG+TGG + chr3_4:65922767-65922786 None:intergenic 35.0%
AGAGGATGCAAAAGAATTTG+CGG - chr3_4:65922768-65922787 Msa0514940:intron 35.0%
AAAGAATTTGCGGAGAAAGA+AGG - chr3_4:65922778-65922797 Msa0514940:intron 35.0%
TTCTGTCAAAACAGTCATGA+AGG + chr3_4:65922854-65922873 None:intergenic 35.0%
AGGAACAATAATCTTCTTGC+CGG + chr3_4:65922950-65922969 None:intergenic 35.0%
!! TTCGTATGACCAAGTTTTGA+TGG - chr3_4:65923066-65923085 Msa0514940:intron 35.0%
!! ATGACCAAGTTTTGATGGTT+TGG - chr3_4:65923071-65923090 Msa0514940:CDS 35.0%
!! TGTTGATTTAAGACCTGAGA+TGG - chr3_4:65923139-65923158 Msa0514940:CDS 35.0%
ACAAGCGCTACTAATTTCAT+AGG - chr3_4:65923190-65923209 Msa0514940:CDS 35.0%
AATTTCATAGGTAGCCTGAT+TGG - chr3_4:65923202-65923221 Msa0514940:CDS 35.0%
ACAATGTTCCAATTCCAATC+AGG + chr3_4:65923219-65923238 None:intergenic 35.0%
CCTCTCTATATTAGGCTATT+TGG + chr3_4:65923263-65923282 None:intergenic 35.0%
CCAAATAGCCTAATATAGAG+AGG - chr3_4:65923260-65923279 Msa0514940:CDS 35.0%
TGAAGACGTAGTCTATCTTC+TGG + chr3_4:65919893-65919912 None:intergenic 40.0%
GAAGATAGACTACGTCTTCA+AGG - chr3_4:65919893-65919912 Msa0514940:three_prime_UTR 40.0%
!! TATCTGAGATTTTCCAACGG+CGG + chr3_4:65919937-65919956 None:intergenic 40.0%
GTGGACTCAAAAGCTACAAT+CGG - chr3_4:65919987-65920006 Msa0514940:three_prime_UTR 40.0%
AGAAAGAAGAGAACCGTTCT+TGG + chr3_4:65920085-65920104 None:intergenic 40.0%
!! ATTTGACTGATGTTGACTCG+AGG + chr3_4:65920392-65920411 None:intergenic 40.0%
ACTCATCCCAAAGAAACCAT+AGG + chr3_4:65920566-65920585 None:intergenic 40.0%
TCGGCATATTTGAACTTCAG+TGG - chr3_4:65920862-65920881 Msa0514940:intron 40.0%
GTATGCATTCGACATGAATG+AGG + chr3_4:65921037-65921056 None:intergenic 40.0%
GTTGGATTTCATACGTCACA+AGG - chr3_4:65921297-65921316 Msa0514940:intron 40.0%
AGCAGTTAGGAAGACATTGA+TGG - chr3_4:65921341-65921360 Msa0514940:intron 40.0%
GCAGTTAGGAAGACATTGAT+GGG - chr3_4:65921342-65921361 Msa0514940:intron 40.0%
AGGAAGACATTGATGGGAAA+TGG - chr3_4:65921348-65921367 Msa0514940:intron 40.0%
! TGGGAAATGGATTTGGAAGT+TGG - chr3_4:65921361-65921380 Msa0514940:intron 40.0%
! GGGAAATGGATTTGGAAGTT+GGG - chr3_4:65921362-65921381 Msa0514940:intron 40.0%
GGGTCAGAAAGTAAGAAGAA+CGG - chr3_4:65921509-65921528 Msa0514940:intron 40.0%
GGTCAGAAAGTAAGAAGAAC+GGG - chr3_4:65921510-65921529 Msa0514940:intron 40.0%
CTAGGAGTTACTGAGATTTC+AGG - chr3_4:65921576-65921595 Msa0514940:intron 40.0%
CATGCATGATAAATCATGGG+TGG + chr3_4:65921711-65921730 None:intergenic 40.0%
GTAGTTGTGTTTAGAGGGAA+AGG + chr3_4:65921854-65921873 None:intergenic 40.0%
TAGCGGTAGTTGTGTTTAGA+GGG + chr3_4:65921859-65921878 None:intergenic 40.0%
TTAGCGGTAGTTGTGTTTAG+AGG + chr3_4:65921860-65921879 None:intergenic 40.0%
CAATAGGGGATTCAGTTTAG+CGG + chr3_4:65921876-65921895 None:intergenic 40.0%
ATGTGTGGAGAGAACAATAG+GGG + chr3_4:65921890-65921909 None:intergenic 40.0%
GATGTGTGGAGAGAACAATA+GGG + chr3_4:65921891-65921910 None:intergenic 40.0%
AGGTAGGTTATAAGGATGTG+TGG + chr3_4:65921905-65921924 None:intergenic 40.0%
ATTGGCAGAGGTAGGTTATA+AGG + chr3_4:65921913-65921932 None:intergenic 40.0%
CCCTACAAGTATTTCCTTTC+TGG - chr3_4:65922043-65922062 Msa0514940:intron 40.0%
GCCAGAAAGGAAATACTTGT+AGG + chr3_4:65922047-65922066 None:intergenic 40.0%
CTCACCAGATTGAAGAACAT+TGG + chr3_4:65922408-65922427 None:intergenic 40.0%
CAGTTACAAGTGCATACTAC+AGG - chr3_4:65922584-65922603 Msa0514940:intron 40.0%
GTTACAAGTGCATACTACAG+GGG - chr3_4:65922586-65922605 Msa0514940:intron 40.0%
GCAAGCAACTAATGTTGAGA+CGG - chr3_4:65922828-65922847 Msa0514940:intron 40.0%
CATTGTCAACAAGAAGAACC+TGG - chr3_4:65922882-65922901 Msa0514940:intron 40.0%
GGCAAGAAGATTATTGTTCC+TGG - chr3_4:65922949-65922968 Msa0514940:intron 40.0%
TTCTTAGGGATTTCTTGTGC+AGG + chr3_4:65922976-65922995 None:intergenic 40.0%
GACAACACATGCTCTTCTTA+GGG + chr3_4:65922990-65923009 None:intergenic 40.0%
TGACAACACATGCTCTTCTT+AGG + chr3_4:65922991-65923010 None:intergenic 40.0%
AGCATGTGTTGTCAGTAATC+CGG - chr3_4:65922997-65923016 Msa0514940:intron 40.0%
GTCATACGAACATAGAACCA+TGG + chr3_4:65923056-65923075 None:intergenic 40.0%
ATGGCCAAACCATCAAAACT+TGG + chr3_4:65923078-65923097 None:intergenic 40.0%
! TTTAAGACCTGAGATGGAGT+CGG - chr3_4:65923145-65923164 Msa0514940:CDS 40.0%
ATAGGTAGCCTGATTGGAAT+TGG - chr3_4:65923208-65923227 Msa0514940:CDS 40.0%
GATAGACTACGTCTTCAAGG+TGG - chr3_4:65919896-65919915 Msa0514940:three_prime_UTR 45.0%
! AGAGTGTTAAGGCTCAGATC+TGG - chr3_4:65920048-65920067 Msa0514940:three_prime_UTR 45.0%
GAGTGTTAAGGCTCAGATCT+GGG - chr3_4:65920049-65920068 Msa0514940:three_prime_UTR 45.0%
!! GTTTGACTGATGTTGACTCG+AGG - chr3_4:65920483-65920502 Msa0514940:CDS 45.0%
AGTTTGAGTGTGTATGAGCG+AGG - chr3_4:65920583-65920602 Msa0514940:intron 45.0%
!! TAACCCATTTAGGGTTGGCT+TGG - chr3_4:65920677-65920696 Msa0514940:intron 45.0%
!! AACCCATTTAGGGTTGGCTT+GGG - chr3_4:65920678-65920697 Msa0514940:intron 45.0%
AACCCAAGCCAACCCTAAAT+GGG + chr3_4:65920683-65920702 None:intergenic 45.0%
CATACTGCCTGACTTAACTC+AGG - chr3_4:65921052-65921071 Msa0514940:intron 45.0%
CATGTCACCTGAGTTAAGTC+AGG + chr3_4:65921062-65921081 None:intergenic 45.0%
ACTTGAATGACACGTGTGGT+TGG - chr3_4:65921279-65921298 Msa0514940:intron 45.0%
CTCAGTAACTCCTAGCTGTT+GGG + chr3_4:65921571-65921590 None:intergenic 45.0%
TCTCAGTAACTCCTAGCTGT+TGG + chr3_4:65921572-65921591 None:intergenic 45.0%
TGTGAGCAACTCACTGTAGA+GGG + chr3_4:65921794-65921813 None:intergenic 45.0%
TTGTGAGCAACTCACTGTAG+AGG + chr3_4:65921795-65921814 None:intergenic 45.0%
CAGTGAGTTGCTCACAATAG+AGG - chr3_4:65921798-65921817 Msa0514940:intron 45.0%
GGATGTGTGGAGAGAACAAT+AGG + chr3_4:65921892-65921911 None:intergenic 45.0%
AGATAGCACTCTCACAGGAT+TGG + chr3_4:65921931-65921950 None:intergenic 45.0%
!! AATCCTGTGAGAGTGCTATC+TGG - chr3_4:65921930-65921949 Msa0514940:intron 45.0%
GTAACAGATACTTGCTCAGC+TGG - chr3_4:65922000-65922019 Msa0514940:intron 45.0%
GCTGTGTGCTTACAGACATT+GGG - chr3_4:65922065-65922084 Msa0514940:intron 45.0%
GGTGCATGAGTTGTACACTA+AGG + chr3_4:65922155-65922174 None:intergenic 45.0%
CTAGGTATGTGATCGAAGCT+CGG + chr3_4:65922652-65922671 None:intergenic 45.0%
GCTTCGATCACATACCTAGA+TGG - chr3_4:65922653-65922672 Msa0514940:intron 45.0%
CGCAGTTCTTCTAACCATCT+AGG + chr3_4:65922670-65922689 None:intergenic 45.0%
GCTGATGAGAATCAGGGAAA+TGG - chr3_4:65922907-65922926 Msa0514940:intron 45.0%
TGGTGGAAGAATATCTCCTC+TGG + chr3_4:65923355-65923374 None:intergenic 45.0%
ACAATGGCGAGTGCAGGTTA+CGG - chr3_4:65919858-65919877 Msa0514940:three_prime_UTR 50.0%
TTAATCGGTGATTCCGCCGT+TGG - chr3_4:65919921-65919940 Msa0514940:three_prime_UTR 50.0%
TGCAAGAAACGACTTCAGCG+TGG - chr3_4:65919968-65919987 Msa0514940:three_prime_UTR 50.0%
!! GACTGATGTTGACTCGAGGT+TGG - chr3_4:65920487-65920506 Msa0514940:CDS 50.0%
GAACCCAAGCCAACCCTAAA+TGG + chr3_4:65920684-65920703 None:intergenic 50.0%
!! TTAGGGTTGGCTTGGGTTCT+TGG - chr3_4:65920685-65920704 Msa0514940:intron 50.0%
AGCGATACAGACTGCAGAGT+AGG + chr3_4:65921428-65921447 None:intergenic 50.0%
CATAACTCCTCCCAACAGCT+AGG - chr3_4:65921558-65921577 Msa0514940:intron 50.0%
AGTAACTCCTAGCTGTTGGG+AGG + chr3_4:65921568-65921587 None:intergenic 50.0%
AGACCAGATAGCACTCTCAC+AGG + chr3_4:65921936-65921955 None:intergenic 50.0%
GGGAGAAATGGGTGAGTGTT+TGG + chr3_4:65922026-65922045 None:intergenic 50.0%
CTGTAAGCACACAGCCAGAA+AGG + chr3_4:65922060-65922079 None:intergenic 50.0%
GGCTGTGTGCTTACAGACAT+TGG - chr3_4:65922064-65922083 Msa0514940:intron 50.0%
ATTAGTTGCTTGCAGCGCAG+AGG + chr3_4:65922821-65922840 None:intergenic 50.0%
CTGGCTGCTGATGAGAATCA+GGG - chr3_4:65922901-65922920 Msa0514940:intron 50.0%
ATTACCTCCGACTCCATCTC+AGG + chr3_4:65923155-65923174 None:intergenic 50.0%
GCAAGAACAATGGCGAGTGC+AGG - chr3_4:65919852-65919871 Msa0514940:three_prime_UTR 55.0%
! CTCACAGGATTGGCAGAGGT+AGG + chr3_4:65921921-65921940 None:intergenic 55.0%
! CACTCTCACAGGATTGGCAG+AGG + chr3_4:65921925-65921944 None:intergenic 55.0%
!! CATACTACAGGGGCGCTGTT+GGG - chr3_4:65922596-65922615 Msa0514940:intron 55.0%
!! ATACTACAGGGGCGCTGTTG+GGG - chr3_4:65922597-65922616 Msa0514940:intron 55.0%
GTGATCGAAGCTCGGACGTT+TGG + chr3_4:65922644-65922663 None:intergenic 55.0%
CCTGATTCTCATCAGCAGCC+AGG + chr3_4:65922903-65922922 None:intergenic 55.0%
CCTGGCTGCTGATGAGAATC+AGG - chr3_4:65922900-65922919 Msa0514940:intron 55.0%
GGCATCTCAGCATCTCTGTC+CGG - chr3_4:65922928-65922947 Msa0514940:intron 55.0%
GGGATTTCTTGTGCAGGACC+AGG + chr3_4:65922970-65922989 None:intergenic 55.0%
AAGACCTGAGATGGAGTCGG+AGG - chr3_4:65923148-65923167 Msa0514940:CDS 55.0%
! GCTCAGATCTGGGACACTGC+TGG - chr3_4:65920059-65920078 Msa0514940:three_prime_UTR 60.0%
GGGACACTGCTGGCCAAGAA+CGG - chr3_4:65920069-65920088 Msa0514940:three_prime_UTR 60.0%
GAGCGAGGTGTGATTGACGC+AGG - chr3_4:65920598-65920617 Msa0514940:intron 60.0%
!! GCATACTACAGGGGCGCTGT+TGG - chr3_4:65922595-65922614 Msa0514940:intron 60.0%
! GGGCGCTGTTGGGGCAATGT+TGG - chr3_4:65922606-65922625 Msa0514940:intron 65.0%
GCAGCGTGCAGTACCCACAG+AGG - chr3_4:65922750-65922769 Msa0514940:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 65919776 65923381 65919776 ID=Msa0514940;Name=Msa0514940
chr3_4 mRNA 65919776 65923381 65919776 ID=Msa0514940-mRNA-1;Parent=Msa0514940;Name=Msa0514940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|1|1|1|1|1|2|367|222
chr3_4 exon 65919776 65920581 65919776 ID=Msa0514940-mRNA-1:exon:16953;Parent=Msa0514940-mRNA-1
chr3_4 exon 65923067 65923381 65923067 ID=Msa0514940-mRNA-1:exon:16952;Parent=Msa0514940-mRNA-1
chr3_4 five_prime_UTR 65923297 65923381 65923297 ID=Msa0514940-mRNA-1:five_prime_utr;Parent=Msa0514940-mRNA-1
chr3_4 CDS 65923067 65923296 65923067 ID=Msa0514940-mRNA-1:cds;Parent=Msa0514940-mRNA-1
chr3_4 CDS 65920143 65920581 65920143 ID=Msa0514940-mRNA-1:cds;Parent=Msa0514940-mRNA-1
chr3_4 three_prime_UTR 65919776 65920142 65919776 ID=Msa0514940-mRNA-1:three_prime_utr;Parent=Msa0514940-mRNA-1
Gene Sequence

>Msa0514940

ATGGCGAGTGCAGGTTACGGTGATGCAAACCAGAAGATAGACTACGTCTTCAAGGTGGTTTTAATCGGTGATTCCGCCGTTGGAAAATCTCAGATACTAGCTCGGTTTGCAAGAAACGACTTCAGCGTGGACTCAAAAGCTACAATCGGTGTTGAGTTTCAAACTCGTACTTTGGTTATTGAACATAAGAGTGTTAAGGCTCAGATCTGGGACACTGCTGGCCAAGAACGATATAGAGCAGTTACAAGTGCATACTACAGGGGCGCTGTTGGGGCAATGTTGGTTTATGACATTACCAAACGTCCGAGCTTCGATCACATACCTAGATGGTTAGAAGAACTGCGCAACCATGCTGACAAGAATATAGTCATCATTCTTATAGGAAACAAAAGTGATCTTGAGGAGCAGCGTGCAGTACCCACAGAGGATGCAAAAGAATTTGCGGAGAAAGAAGGCTTATTTTTCTTAGAGACCTCTGCGCTGCAAGCAACTAATGTTGAGACGGCCTTCATGACTGTTTTGACAGAAATATTTAACATTGTCAACAAGAAGAACCTGGCTGCTGATGAGAATCAGGGAAATGGCATCTCAGCATCTCTGTCCGGCAAGAAGATTATTGTTCCTGGTCCTGCACAAGAAATCCCTAAGAAGAGCATGTGTTGTCAGTAA
Protein sequence

>Msa0514940

MASAGYGDANQKIDYVFKVVLIGDSAVGKSQILARFARNDFSVDSKATIGVEFQTRTLVIEHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRPSFDHIPRWLEELRNHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAEKEGLFFLETSALQATNVETAFMTVLTEIFNIVNKKNLAADENQGNGISASLSGKKIIVPGPAQEIPKKSMCCQ*