AlfalfaGEDB | Msa1373820

M. sativa cultivar zhongmu-4 / Msa1373820

KEGG: K20899
GO: GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009987 GO:0010033 GO:0034097 GO:0034341 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071345 GO:0071346
PFAM: PF02841.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1373820	XP_024626436.1	99.525	421	2	0	5	425	178	598	0.0	871

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1373820	A0A396H4G1	99.525	421	2	0	5	425	178	598	0.0	871

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa1373820	0.899485	1.891184e-77	-8.615850e-47
Msa0002560	Msa1373820	0.802508	5.425932e-49	-8.615850e-47
Msa0002680	Msa1373820	0.855800	4.947639e-62	-8.615850e-47
Msa0002710	Msa1373820	0.808225	3.438481e-50	-8.615850e-47
Msa0003220	Msa1373820	0.838109	3.494716e-57	-8.615850e-47
Msa0003270	Msa1373820	0.821823	3.288839e-53	-8.615850e-47
Msa0003720	Msa1373820	0.812441	4.233826e-51	-8.615850e-47
Msa0004540	Msa1373820	0.835698	1.442243e-56	-8.615850e-47
Msa0007850	Msa1373820	0.810904	9.140640e-51	-8.615850e-47
Msa0007970	Msa1373820	0.837900	3.955697e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1373820	MtrunA17_Chr7g0260571	99.525	421	2	0	5	425	178	598	0.0	871
Msa1373820	MtrunA17_Chr1g0184861	74.645	422	103	2	7	425	4	424	0.0	674

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1373820	AT2G38840.2	75.000	416	104	0	5	420	21	436	0.0	683
Msa1373820	AT2G38840.1	75.000	416	104	0	5	420	179	594	0.0	682

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Find 161 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTATGATGATTCAGT+TGG	0.497813	tig0019464:+21072	Msa1373820:exon
AAAAGAAACATGGATCACGG+TGG	0.783518	tig0019464:+21003	Msa1373820:CDS
AAACAAGGTTTACCTTCGCA+CGG	0.606024	tig0019464:+14193	Msa1373820:five_prime_UTR
AAACTTCGTCTATCACAGGA+AGG	0.654561	tig0019464:+15699	Msa1373820:five_prime_UTR
AAAGACTTTCCGGAACGGTA+CGG	0.581971	tig0019464:-16432	None:intergenic
AAAGATATTATTACACCAAG+TGG	0.576063	tig0019464:-20951	None:intergenic
AAATGAACTTTATAATAAAC+CGG	0.436465	tig0019464:-20110	None:intergenic
AACAAACCCCATTGCATCTG+TGG	0.545406	tig0019464:+15743	Msa1373820:five_prime_UTR
AAGATATTATTACACCAAGT+GGG	0.595317	tig0019464:-20950	None:intergenic
AAGCACAGAACTTATTACAG+TGG	0.700561	tig0019464:-16975	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCTGAAAATCGAAAGGAA+CGG	-	tig0019464:14363-14382	None:intergenic	30.0%
ATAACTATAAGTGGCAAATG+CGG	-	tig0019464:14391-14410	None:intergenic	30.0%
ATGGATGGTAAATAAATGGA+TGG	+	tig0019464:14827-14846	Msa1373820:intron	30.0%
TACTTAGTGTATGTTTGGAT+CGG	+	tig0019464:14926-14945	Msa1373820:intron	30.0%
TAACTGTTTAACCGTATGTT+TGG	-	tig0019464:15003-15022	None:intergenic	30.0%
AAACATACGGTTAAACAGTT+AGG	+	tig0019464:15002-15021	Msa1373820:intron	30.0%
GTTGCCAATTCAATAATTTG+GGG	+	tig0019464:15458-15477	Msa1373820:intron	30.0%
TCGTAACACTTATTGATGTT+TGG	+	tig0019464:15835-15854	Msa1373820:intron	30.0%
TAACACTTATTGATGTTTGG+TGG	+	tig0019464:15838-15857	Msa1373820:intron	30.0%
TACTATATAAATAGGCCTCT+AGG	+	tig0019464:16055-16074	Msa1373820:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019464	gene	14166	21524	14166	ID=Msa1373820;Name=Msa1373820
tig0019464	mRNA	14166	21524	14166	ID=Msa1373820-mRNA-1;Parent=Msa1373820;Name=Msa1373820-mRNA-1;_AED=0.15;_eAED=0.15;_QI=943\|1\|1\|1\|1\|0.93\|16\|451\|425
tig0019464	exon	14166	14497	14166	ID=Msa1373820-mRNA-1:exon:3575;Parent=Msa1373820-mRNA-1
tig0019464	exon	15665	15767	15665	ID=Msa1373820-mRNA-1:exon:3576;Parent=Msa1373820-mRNA-1
tig0019464	exon	16423	16492	16423	ID=Msa1373820-mRNA-1:exon:3577;Parent=Msa1373820-mRNA-1
tig0019464	exon	16613	16651	16613	ID=Msa1373820-mRNA-1:exon:3578;Parent=Msa1373820-mRNA-1
tig0019464	exon	16753	16870	16753	ID=Msa1373820-mRNA-1:exon:3579;Parent=Msa1373820-mRNA-1
tig0019464	exon	16961	17018	16961	ID=Msa1373820-mRNA-1:exon:3580;Parent=Msa1373820-mRNA-1
tig0019464	exon	17102	17351	17102	ID=Msa1373820-mRNA-1:exon:3581;Parent=Msa1373820-mRNA-1
tig0019464	exon	17450	17510	17450	ID=Msa1373820-mRNA-1:exon:3582;Parent=Msa1373820-mRNA-1
tig0019464	exon	17659	17718	17659	ID=Msa1373820-mRNA-1:exon:3583;Parent=Msa1373820-mRNA-1
tig0019464	exon	17805	17824	17805	ID=Msa1373820-mRNA-1:exon:3584;Parent=Msa1373820-mRNA-1
tig0019464	exon	17917	17982	17917	ID=Msa1373820-mRNA-1:exon:3585;Parent=Msa1373820-mRNA-1
tig0019464	exon	18123	18290	18123	ID=Msa1373820-mRNA-1:exon:3586;Parent=Msa1373820-mRNA-1
tig0019464	exon	18889	19146	18889	ID=Msa1373820-mRNA-1:exon:3587;Parent=Msa1373820-mRNA-1
tig0019464	exon	19668	19880	19668	ID=Msa1373820-mRNA-1:exon:3588;Parent=Msa1373820-mRNA-1
tig0019464	exon	20015	20286	20015	ID=Msa1373820-mRNA-1:exon:3589;Parent=Msa1373820-mRNA-1
tig0019464	exon	20941	21524	20941	ID=Msa1373820-mRNA-1:exon:3590;Parent=Msa1373820-mRNA-1
tig0019464	five_prime_UTR	14166	14497	14166	ID=Msa1373820-mRNA-1:five_prime_utr;Parent=Msa1373820-mRNA-1
tig0019464	five_prime_UTR	15665	15767	15665	ID=Msa1373820-mRNA-1:five_prime_utr;Parent=Msa1373820-mRNA-1
tig0019464	five_prime_UTR	16423	16492	16423	ID=Msa1373820-mRNA-1:five_prime_utr;Parent=Msa1373820-mRNA-1
tig0019464	five_prime_UTR	16613	16651	16613	ID=Msa1373820-mRNA-1:five_prime_utr;Parent=Msa1373820-mRNA-1
tig0019464	five_prime_UTR	16753	16870	16753	ID=Msa1373820-mRNA-1:five_prime_utr;Parent=Msa1373820-mRNA-1
tig0019464	five_prime_UTR	16961	17018	16961	ID=Msa1373820-mRNA-1:five_prime_utr;Parent=Msa1373820-mRNA-1
tig0019464	five_prime_UTR	17102	17324	17102	ID=Msa1373820-mRNA-1:five_prime_utr;Parent=Msa1373820-mRNA-1
tig0019464	CDS	17325	17351	17325	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	17450	17510	17450	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	17659	17718	17659	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	17805	17824	17805	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	17917	17982	17917	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	18123	18290	18123	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	18889	19146	18889	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	19668	19880	19668	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	20015	20286	20015	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	CDS	20941	21073	20941	ID=Msa1373820-mRNA-1:cds;Parent=Msa1373820-mRNA-1
tig0019464	three_prime_UTR	21074	21524	21074	ID=Msa1373820-mRNA-1:three_prime_utr;Parent=Msa1373820-mRNA-1

Gene Sequence

>Msa1373820

ATGTCCGTGTGTTGGAATAGAGTGAAGGGCCAGGATGTTGCATTTGAACCTGCCAAGCTCTTGTGGCTTATCCAACGTGATTTTCTGCAAGGGAAATCAGTGCAACAAATGGTGGATGAAGCTCTTCGACAAGTCCCTAATAAAGATAGAGACAGAAATATTGATATGATCAATCAAATTCGGGATTCATTGGCTATTATGGGTGACAATAGTACGGCCTTTAGCTTACCACAACCACATCTCCAGCGGACAAAGCTTTGTGACTTGAAGGATGGGGAGCTTGATCCATCATATGTGAAGAAAAGGGAGAAGCTAAAAGAGCTTGTTTCTAGTATAATCCGTCCAAAGATTGTACAAGGAAAATCTCTAAATGGGAAAGAGTTTGTTTCCTTCCTGAAGCAGATACTTGAAGCCTTGAACAAGGGAGAGATTCCATCAACAGGTTCTCTTGTGGAGATTTTCAACAAGGACATTCTTGAAAGATGTCTTAAGTTATACAGTGAAAAGATGGCCACATTGGCTCTACCTCTTCCAGAAGGATATCTTCAAGCTTCCCATGACATGGCTAGAGGTGACGCCATGCAAGCATTCGATCAGCAACATTTTGGCCGTCACCATGCTAAGAAGTCAGTCACGCAACTGGATGAAGAAATAGATAAGGTATTTAAGAATGTCATTTTACAAAATGAATATAAATCTTCAAAGCTTTGTGAGGCACTGTACACCGATTGCGAGGACATGATGGACCAGCTTCAAGTTCTCAAGCTTCCTTCAATGGCAAAATTTAATGCAGGTCTCGAGAAATGCAATCGTACTTTTGAGCATGATTGTGTTGGACCTTCAAAAGCAAACTACGAGGGACGTATGGCAAAGATGTTGGTAAAGTCTAAGTCTCTATTTATAAAGGAGTACAACCACAGGCTTTTCAATTGGTTGGTGGCTTTCTCCCTCGTCACGGTTGTGGTTGGCCGGTTTATTATAAAGTTCATTTTGATTGAAATTGGAGGATGGTTACTTTTTATATTTCTGGAGACCTACACAAGGTTGTTTTGGTCAGCAGAGTCACTTTACTACAATCCAGTTTGGCATTTTATAGTTGCATCGTGGGAAACTCTTGTTTACAGCCCAGTCCTTGATCTTGACAGATGGGCTATCCCACTTGGTGTAATAATATCTTTTTTCATTCTATATTGGCGGTGTTATGGGAAAAAGAAACATGGATCACGGTGGCTATTACCATTATATAGCAGCAATAAAAATAGACCAAGAACAGACTAA

Protein sequence

>Msa1373820

MSVCWNRVKGQDVAFEPAKLLWLIQRDFLQGKSVQQMVDEALRQVPNKDRDRNIDMINQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDLKDGELDPSYVKKREKLKELVSSIIRPKIVQGKSLNGKEFVSFLKQILEALNKGEIPSTGSLVEIFNKDILERCLKLYSEKMATLALPLPEGYLQASHDMARGDAMQAFDQQHFGRHHAKKSVTQLDEEIDKVFKNVILQNEYKSSKLCEALYTDCEDMMDQLQVLKLPSMAKFNAGLEKCNRTFEHDCVGPSKANYEGRMAKMLVKSKSLFIKEYNHRLFNWLVAFSLVTVVVGRFIIKFILIEIGGWLLFIFLETYTRLFWSAESLYYNPVWHFIVASWETLVYSPVLDLDRWAIPLGVIISFFILYWRCYGKKKHGSRWLLPLYSSNKNRPRTD*