AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208020 MtrunA17_Chr4g0056921 100.000 151 0 0 1 151 1 151 5.58e-109 306
Msa1208020 MtrunA17_Chr4g0011261 94.040 151 9 0 1 151 1 151 2.54e-102 289
Msa1208020 MtrunA17_Chr5g0398801 92.715 151 11 0 1 151 1 151 1.19e-100 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208020 AT4G00100.1 92.053 151 12 0 1 151 1 151 7.99e-101 286
Msa1208020 AT3G60770.1 92.053 151 12 0 1 151 1 151 1.99e-100 285

Find 62 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGATCGGTGTTATTCTT+AGG 0.199752 8_1:-65884729 Msa1208020:CDS
CCAGACTGGTGGGAGCTTCT+TGG 0.208703 8_1:+65883883 None:intergenic
TGCTGTTCTGCAGTCGCTTT+TGG 0.209015 8_1:-65883140 Msa1208020:three_prime_UTR
ATCCTTCAGATGCAGTAAAA+TGG 0.217744 8_1:+65882916 None:intergenic
GAGCTGCGCGCTTTGTGATT+AGG 0.236941 8_1:+65885114 None:intergenic
AGCTGCGCGCTTTGTGATTA+GGG 0.250350 8_1:+65885115 None:intergenic
CATCTGAAGGATACGTTGTT+TGG 0.330974 8_1:-65882905 Msa1208020:three_prime_UTR
TTAACTAGTTCAAGTCTTCC+AGG 0.332262 8_1:+65883072 None:intergenic
ACTTGGAGTCCTTATCCTTT+CGG 0.353333 8_1:+65883963 None:intergenic
TCAAGAAGGCAGTTTCAATT+AGG 0.353735 8_1:-65884003 Msa1208020:CDS
TACAGATCCTCAGGAATTTC+CGG 0.365553 8_1:+65884034 None:intergenic
CACAAGAATCAACCTGAACT+TGG 0.390376 8_1:+65883946 None:intergenic
GCTCAAAGCTTCAGCAATCA+TGG 0.390594 8_1:-65885095 Msa1208020:exon
TGTTGATGTTGCGTTGGGTT+TGG 0.400753 8_1:-65882865 Msa1208020:three_prime_UTR
TATATGCATGCTGGAAATCT+TGG 0.402365 8_1:-65882946 Msa1208020:three_prime_UTR
TCAGATCGGTGTTATTCTTA+GGG 0.403625 8_1:-65884728 Msa1208020:CDS
AGTTTCAATTAGGAAGCATT+TGG 0.418745 8_1:-65883993 Msa1208020:CDS
CCAAGAAGCTCCCACCAGTC+TGG 0.424976 8_1:-65883883 Msa1208020:CDS
AAACTGCCTTCTTGATCAAA+TGG 0.434219 8_1:+65884011 None:intergenic
TCCTTCAGATGCAGTAAAAT+GGG 0.439527 8_1:+65882917 None:intergenic
AGTGAACCAGAACTAGGGTT+TGG 0.452696 8_1:-65885172 None:intergenic
TATTTGCAAGTTTGCAAAGA+AGG 0.458801 8_1:-65884764 Msa1208020:CDS
GGAGAGGAACCGAAAGGATA+AGG 0.464398 8_1:-65883972 Msa1208020:CDS
AGGATAAGGACTCCAAGTTC+AGG 0.467196 8_1:-65883958 Msa1208020:CDS
TTTGGTTTCATGATCAGTCC+TGG 0.477897 8_1:-65883090 Msa1208020:three_prime_UTR
ATCAAATGGTACAGATCCTC+AGG 0.478375 8_1:+65884025 None:intergenic
TCACTGGCAGCAAAATCCTT+AGG 0.488968 8_1:-65884675 Msa1208020:CDS
CTCAAAGCTTCAGCAATCAT+GGG 0.490699 8_1:-65885094 Msa1208020:exon
CAAGTTCAGGTTGATTCTTG+TGG 0.500791 8_1:-65883945 Msa1208020:CDS
GTTATTCTTAGGGATTCTCA+TGG 0.504564 8_1:-65884718 Msa1208020:CDS
GCTCAAGTTAAGTTTATCAC+TGG 0.507100 8_1:-65884691 Msa1208020:CDS
CATGAGCCTTGAGGATCCTA+AGG 0.520024 8_1:+65884659 None:intergenic
ATCAACAACTGCCAGCACTT+TGG 0.526669 8_1:-65883196 Msa1208020:CDS
CCTCTGCTTTACCATACAAA+AGG 0.527826 8_1:-65884920 Msa1208020:CDS
ATTTGCAAGTTTGCAAAGAA+GGG 0.531484 8_1:-65884763 Msa1208020:CDS
GTAGAGGTCTTGAGCCATCC+TGG 0.536330 8_1:+65884891 None:intergenic
AAACATGTTGATGTTGCGTT+GGG 0.538051 8_1:-65882870 Msa1208020:three_prime_UTR
AGCATAACAAGTCAAAATCA+AGG 0.544124 8_1:+65883159 None:intergenic
AGAATAACACCGATCTGAGA+TGG 0.551609 8_1:+65884733 None:intergenic
CTTAGGATCCTCAAGGCTCA+TGG 0.558577 8_1:-65884658 Msa1208020:intron
TCTCTAAGCAACCAAAGTGC+TGG 0.564231 8_1:+65883185 None:intergenic
AAAACATGTTGATGTTGCGT+TGG 0.577507 8_1:-65882871 Msa1208020:three_prime_UTR
GTTGATTGTAGGACTTGCAC+CGG 0.579296 8_1:-65884053 Msa1208020:intron
TCTGTACCATTTGATCAAGA+AGG 0.592710 8_1:-65884017 Msa1208020:CDS
ACTTACTACTTCCAGACTGG+TGG 0.595917 8_1:+65883872 None:intergenic
CCATACAAAAGGTCTGCACC+AGG 0.597287 8_1:-65884909 Msa1208020:CDS
ATCATGGGGCGTATGCATAG+TGG 0.599233 8_1:-65885079 Msa1208020:CDS
GGTACTTACTACTTCCAGAC+TGG 0.601291 8_1:+65883869 None:intergenic
CAATTAGGAAGCATTTGGAG+AGG 0.603553 8_1:-65883988 Msa1208020:CDS
ATGGGGCGTATGCATAGTGG+CGG 0.611401 8_1:-65885076 Msa1208020:CDS
TGGGGCGTATGCATAGTGGC+GGG 0.622617 8_1:-65885075 Msa1208020:intron
AGAACATACCATGAGCCTTG+AGG 0.623812 8_1:+65884650 None:intergenic
TGTAATAGCGAGCAAGACGG+TGG 0.633533 8_1:+65883912 None:intergenic
ACAAAAGGTCTGCACCAGGA+TGG 0.633754 8_1:-65884905 Msa1208020:CDS
CAAAATCCTTAGGATCCTCA+AGG 0.639899 8_1:-65884665 Msa1208020:CDS
CTGTTGTCATTTGAAAGATG+TGG 0.649779 8_1:-65883000 Msa1208020:three_prime_UTR
CTTACTACTTCCAGACTGGT+GGG 0.659946 8_1:+65883873 None:intergenic
GCATTTGGAGAGGAACCGAA+AGG 0.672061 8_1:-65883978 Msa1208020:CDS
GGTTTGACTCCATCTCAGAT+CGG 0.677869 8_1:-65884742 Msa1208020:CDS
TCAAAGCTTCAGCAATCATG+GGG 0.680472 8_1:-65885093 Msa1208020:exon
TCTTGTAATAGCGAGCAAGA+CGG 0.689009 8_1:+65883909 None:intergenic
ACTTGCACCGGAAATTCCTG+AGG 0.709274 8_1:-65884041 Msa1208020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATAAAAGAAAAAAAAA+TGG + chr8_1:65884211-65884230 None:intergenic 10.0%
!! CTATATATCTAATAATATAA+TGG - chr8_1:65884505-65884524 Msa1208020:intron 10.0%
!! ATACATAAAAGAAAAAAAAA+TGG + chr8_1:65884211-65884230 None:intergenic 10.0%
!! CTATATATCTAATAATATAA+TGG - chr8_1:65884505-65884524 Msa1208020:intron 10.0%
!!! TTTTGAATTGTTTCAATTTT+TGG - chr8_1:65883015-65883034 Msa1208020:three_prime_UTR 15.0%
!!! GATTGATTTATTTGAATTAT+AGG - chr8_1:65883181-65883200 Msa1208020:exon 15.0%
!! TCAATATGAATAAACAAATA+GGG + chr8_1:65884133-65884152 None:intergenic 15.0%
!! ATCAATATGAATAAACAAAT+AGG + chr8_1:65884134-65884153 None:intergenic 15.0%
!! TTTATATTGAAATTCTATTC+TGG - chr8_1:65884573-65884592 Msa1208020:intron 15.0%
!!! TTTTGAATTGTTTCAATTTT+TGG - chr8_1:65883015-65883034 Msa1208020:three_prime_UTR 15.0%
!!! GATTGATTTATTTGAATTAT+AGG - chr8_1:65883181-65883200 Msa1208020:exon 15.0%
!! TCAATATGAATAAACAAATA+GGG + chr8_1:65884133-65884152 None:intergenic 15.0%
!! ATCAATATGAATAAACAAAT+AGG + chr8_1:65884134-65884153 None:intergenic 15.0%
!! TTTATATTGAAATTCTATTC+TGG - chr8_1:65884573-65884592 Msa1208020:intron 15.0%
!! ATTGACAAAAAAATGATGAT+GGG + chr8_1:65883135-65883154 None:intergenic 20.0%
!! TGATTTATTTGAATTATAGG+TGG - chr8_1:65883184-65883203 Msa1208020:exon 20.0%
!!! ATTTGTGTCATTATAGATTA+TGG - chr8_1:65883375-65883394 Msa1208020:intron 20.0%
!!! TTTGTGTCATTATAGATTAT+GGG - chr8_1:65883376-65883395 Msa1208020:intron 20.0%
!!! GTTTTCAGTTTATTTACATA+TGG - chr8_1:65883499-65883518 Msa1208020:intron 20.0%
!! TTATGTGAATTTAGATAAAC+AGG - chr8_1:65883724-65883743 Msa1208020:intron 20.0%
!! ATATTATAAGCACTTATGAT+AGG - chr8_1:65883829-65883848 Msa1208020:intron 20.0%
!!! TAGTAAATGAGATTTCTTTT+GGG - chr8_1:65883902-65883921 Msa1208020:CDS 20.0%
!!! TAGTACTAGAAAAATGATTT+TGG - chr8_1:65884183-65884202 Msa1208020:intron 20.0%
!! AGATTATTTGATCTATTTGA+AGG - chr8_1:65884275-65884294 Msa1208020:intron 20.0%
!! ACATTTAATACAATAGCATA+GGG + chr8_1:65884312-65884331 None:intergenic 20.0%
!!! TATATAGCTTTTGTTGAAAA+TGG + chr8_1:65884492-65884511 None:intergenic 20.0%
!! ATTGACAAAAAAATGATGAT+GGG + chr8_1:65883135-65883154 None:intergenic 20.0%
!! TGATTTATTTGAATTATAGG+TGG - chr8_1:65883184-65883203 Msa1208020:exon 20.0%
!!! ATTTGTGTCATTATAGATTA+TGG - chr8_1:65883375-65883394 Msa1208020:intron 20.0%
!!! TTTGTGTCATTATAGATTAT+GGG - chr8_1:65883376-65883395 Msa1208020:intron 20.0%
!!! GTTTTCAGTTTATTTACATA+TGG - chr8_1:65883499-65883518 Msa1208020:intron 20.0%
!! TTATGTGAATTTAGATAAAC+AGG - chr8_1:65883724-65883743 Msa1208020:intron 20.0%
!! ATATTATAAGCACTTATGAT+AGG - chr8_1:65883829-65883848 Msa1208020:intron 20.0%
!!! TAGTAAATGAGATTTCTTTT+GGG - chr8_1:65883902-65883921 Msa1208020:CDS 20.0%
!!! TAGTACTAGAAAAATGATTT+TGG - chr8_1:65884183-65884202 Msa1208020:intron 20.0%
!! AGATTATTTGATCTATTTGA+AGG - chr8_1:65884275-65884294 Msa1208020:intron 20.0%
!! ACATTTAATACAATAGCATA+GGG + chr8_1:65884312-65884331 None:intergenic 20.0%
!!! TATATAGCTTTTGTTGAAAA+TGG + chr8_1:65884492-65884511 None:intergenic 20.0%
!!! TTCAATTTTTGGTTACAGTA+AGG - chr8_1:65883026-65883045 Msa1208020:three_prime_UTR 25.0%
!!! TCAATTTTTGGTTACAGTAA+GGG - chr8_1:65883027-65883046 Msa1208020:three_prime_UTR 25.0%
! AAAAATTACATCTTGTGTAG+AGG + chr8_1:65883106-65883125 None:intergenic 25.0%
! CATTGACAAAAAAATGATGA+TGG + chr8_1:65883136-65883155 None:intergenic 25.0%
! ACTACCAAATAAGTACTTAT+GGG + chr8_1:65883416-65883435 None:intergenic 25.0%
! TACTACCAAATAAGTACTTA+TGG + chr8_1:65883417-65883436 None:intergenic 25.0%
! TTATAGAAACAGTGTATTAC+AGG - chr8_1:65883701-65883720 Msa1208020:intron 25.0%
! CTTATGAAAACAGGTTATAT+TGG - chr8_1:65883752-65883771 Msa1208020:intron 25.0%
! CTAAATTAAAACTAGAGCAT+AGG + chr8_1:65883857-65883876 None:intergenic 25.0%
!! GTAGTAAATGAGATTTCTTT+TGG - chr8_1:65883901-65883920 Msa1208020:CDS 25.0%
!! AGTAAATGAGATTTCTTTTG+GGG - chr8_1:65883903-65883922 Msa1208020:CDS 25.0%
! ATTTAATACAATAGCATAGG+GGG + chr8_1:65884310-65884329 None:intergenic 25.0%
! CATTTAATACAATAGCATAG+GGG + chr8_1:65884311-65884330 None:intergenic 25.0%
! GACATTTAATACAATAGCAT+AGG + chr8_1:65884313-65884332 None:intergenic 25.0%
! TTAAATGTCAACCTATTTGA+AGG - chr8_1:65884324-65884343 Msa1208020:intron 25.0%
!! CATTTTTCTACTCTTTCTAT+TGG - chr8_1:65884388-65884407 Msa1208020:intron 25.0%
! GTTGAATAAAACAAAGTTTC+AGG - chr8_1:65884422-65884441 Msa1208020:intron 25.0%
! GAATGTTACATTTGATACTA+TGG - chr8_1:65884545-65884564 Msa1208020:intron 25.0%
!!! TAGAATGTTATTGCTTTTGT+CGG - chr8_1:65884681-65884700 Msa1208020:CDS 25.0%
!!! TGCCAATATCTTGTATTTTT+TGG - chr8_1:65884709-65884728 Msa1208020:CDS 25.0%
! CACCAAAAAATACAAGATAT+TGG + chr8_1:65884714-65884733 None:intergenic 25.0%
!!! ATTTTAAGTTATATGCATGC+TGG - chr8_1:65885023-65885042 Msa1208020:intron 25.0%
! CCAAATTAAAATAGTTCAAC+AGG - chr8_1:65885161-65885180 Msa1208020:five_prime_UTR 25.0%
!!! TTCAATTTTTGGTTACAGTA+AGG - chr8_1:65883026-65883045 Msa1208020:three_prime_UTR 25.0%
!!! TCAATTTTTGGTTACAGTAA+GGG - chr8_1:65883027-65883046 Msa1208020:three_prime_UTR 25.0%
! AAAAATTACATCTTGTGTAG+AGG + chr8_1:65883106-65883125 None:intergenic 25.0%
! CATTGACAAAAAAATGATGA+TGG + chr8_1:65883136-65883155 None:intergenic 25.0%
! ACTACCAAATAAGTACTTAT+GGG + chr8_1:65883416-65883435 None:intergenic 25.0%
! TACTACCAAATAAGTACTTA+TGG + chr8_1:65883417-65883436 None:intergenic 25.0%
! TTATAGAAACAGTGTATTAC+AGG - chr8_1:65883701-65883720 Msa1208020:intron 25.0%
! CTTATGAAAACAGGTTATAT+TGG - chr8_1:65883752-65883771 Msa1208020:intron 25.0%
! CTAAATTAAAACTAGAGCAT+AGG + chr8_1:65883857-65883876 None:intergenic 25.0%
!! GTAGTAAATGAGATTTCTTT+TGG - chr8_1:65883901-65883920 Msa1208020:CDS 25.0%
!! AGTAAATGAGATTTCTTTTG+GGG - chr8_1:65883903-65883922 Msa1208020:CDS 25.0%
! ATTTAATACAATAGCATAGG+GGG + chr8_1:65884310-65884329 None:intergenic 25.0%
! CATTTAATACAATAGCATAG+GGG + chr8_1:65884311-65884330 None:intergenic 25.0%
! GACATTTAATACAATAGCAT+AGG + chr8_1:65884313-65884332 None:intergenic 25.0%
! TTAAATGTCAACCTATTTGA+AGG - chr8_1:65884324-65884343 Msa1208020:intron 25.0%
!! CATTTTTCTACTCTTTCTAT+TGG - chr8_1:65884388-65884407 Msa1208020:intron 25.0%
! GTTGAATAAAACAAAGTTTC+AGG - chr8_1:65884422-65884441 Msa1208020:intron 25.0%
! GAATGTTACATTTGATACTA+TGG - chr8_1:65884545-65884564 Msa1208020:intron 25.0%
!!! TAGAATGTTATTGCTTTTGT+CGG - chr8_1:65884681-65884700 Msa1208020:CDS 25.0%
!!! TGCCAATATCTTGTATTTTT+TGG - chr8_1:65884709-65884728 Msa1208020:CDS 25.0%
! CACCAAAAAATACAAGATAT+TGG + chr8_1:65884714-65884733 None:intergenic 25.0%
!!! ATTTTAAGTTATATGCATGC+TGG - chr8_1:65885023-65885042 Msa1208020:intron 25.0%
TTTCACAAAAATCGTCGTTT+CGG - chr8_1:65882830-65882849 Msa1208020:three_prime_UTR 30.0%
ATGAAATTGCGATTGAGAAT+GGG + chr8_1:65882942-65882961 None:intergenic 30.0%
TATTTGCAAGTTTGCAAAGA+AGG - chr8_1:65883214-65883233 Msa1208020:intron 30.0%
ATTTGCAAGTTTGCAAAGAA+GGG - chr8_1:65883215-65883234 Msa1208020:intron 30.0%
TTGACCCATAAGTACTTATT+TGG - chr8_1:65883409-65883428 Msa1208020:intron 30.0%
AAGCACTTGTAAAACTGATT+AGG - chr8_1:65883617-65883636 Msa1208020:intron 30.0%
AAGCACTTGTGAAATTGATT+AGG - chr8_1:65883673-65883692 Msa1208020:intron 30.0%
!! AGTTTCAATTAGGAAGCATT+TGG - chr8_1:65883985-65884004 Msa1208020:CDS 30.0%
!! TCATTTTTCTAGTACTACCA+CGG + chr8_1:65884180-65884199 None:intergenic 30.0%
TCACTTCACACATAAAAACA+TGG + chr8_1:65884255-65884274 None:intergenic 30.0%
ACTCAACAAATCCTTCAAAT+AGG + chr8_1:65884338-65884357 None:intergenic 30.0%
TTGTTGAAAATGGATATCCA+CGG + chr8_1:65884482-65884501 None:intergenic 30.0%
TAACCTAAAATTCTAGCATC+AGG + chr8_1:65884645-65884664 None:intergenic 30.0%
GACAAAAGCAATAACATTCT+AGG + chr8_1:65884682-65884701 None:intergenic 30.0%
AGAGACAAGTCATTAATATC+AGG + chr8_1:65884752-65884771 None:intergenic 30.0%
AGCATAACAAGTCAAAATCA+AGG + chr8_1:65884822-65884841 None:intergenic 30.0%
!!! TTGCTCGAATGTAGTTTTTT+TGG - chr8_1:65884870-65884889 Msa1208020:intron 30.0%
TCTACAGCTGATAAAAAAGA+AGG + chr8_1:65884953-65884972 None:intergenic 30.0%
!!! ATACGTTGTTTGGTTTTTGA+AGG - chr8_1:65885083-65885102 Msa1208020:exon 30.0%
TTTCACAAAAATCGTCGTTT+CGG - chr8_1:65882830-65882849 Msa1208020:three_prime_UTR 30.0%
ATGAAATTGCGATTGAGAAT+GGG + chr8_1:65882942-65882961 None:intergenic 30.0%
TATTTGCAAGTTTGCAAAGA+AGG - chr8_1:65883214-65883233 Msa1208020:intron 30.0%
ATTTGCAAGTTTGCAAAGAA+GGG - chr8_1:65883215-65883234 Msa1208020:intron 30.0%
TTGACCCATAAGTACTTATT+TGG - chr8_1:65883409-65883428 Msa1208020:intron 30.0%
AAGCACTTGTAAAACTGATT+AGG - chr8_1:65883617-65883636 Msa1208020:intron 30.0%
AAGCACTTGTGAAATTGATT+AGG - chr8_1:65883673-65883692 Msa1208020:intron 30.0%
!! AGTTTCAATTAGGAAGCATT+TGG - chr8_1:65883985-65884004 Msa1208020:CDS 30.0%
!! TCATTTTTCTAGTACTACCA+CGG + chr8_1:65884180-65884199 None:intergenic 30.0%
TCACTTCACACATAAAAACA+TGG + chr8_1:65884255-65884274 None:intergenic 30.0%
ACTCAACAAATCCTTCAAAT+AGG + chr8_1:65884338-65884357 None:intergenic 30.0%
TTGTTGAAAATGGATATCCA+CGG + chr8_1:65884482-65884501 None:intergenic 30.0%
TAACCTAAAATTCTAGCATC+AGG + chr8_1:65884645-65884664 None:intergenic 30.0%
GACAAAAGCAATAACATTCT+AGG + chr8_1:65884682-65884701 None:intergenic 30.0%
AGAGACAAGTCATTAATATC+AGG + chr8_1:65884752-65884771 None:intergenic 30.0%
AGCATAACAAGTCAAAATCA+AGG + chr8_1:65884822-65884841 None:intergenic 30.0%
!!! TTGCTCGAATGTAGTTTTTT+TGG - chr8_1:65884870-65884889 Msa1208020:intron 30.0%
TCTACAGCTGATAAAAAAGA+AGG + chr8_1:65884953-65884972 None:intergenic 30.0%
!!! ATACGTTGTTTGGTTTTTGA+AGG - chr8_1:65885083-65885102 Msa1208020:exon 30.0%
TGAAATTGCGATTGAGAATG+GGG + chr8_1:65882941-65882960 None:intergenic 35.0%
GATGAAATTGCGATTGAGAA+TGG + chr8_1:65882943-65882962 None:intergenic 35.0%
!! TCAGATCGGTGTTATTCTTA+GGG - chr8_1:65883250-65883269 Msa1208020:intron 35.0%
GTTATTCTTAGGGATTCTCA+TGG - chr8_1:65883260-65883279 Msa1208020:intron 35.0%
GCTCAAGTTAAGTTTATCAC+TGG - chr8_1:65883287-65883306 Msa1208020:intron 35.0%
TTATTTACATATGGCGTGTG+TGG - chr8_1:65883508-65883527 Msa1208020:intron 35.0%
CAGGTATAGCTTATGAAAAC+AGG - chr8_1:65883743-65883762 Msa1208020:intron 35.0%
!!! TTTCTTTTGGGGTTGATTGT+AGG - chr8_1:65883914-65883933 Msa1208020:CDS 35.0%
TCTGTACCATTTGATCAAGA+AGG - chr8_1:65883961-65883980 Msa1208020:CDS 35.0%
AAACTGCCTTCTTGATCAAA+TGG + chr8_1:65883970-65883989 None:intergenic 35.0%
TCAAGAAGGCAGTTTCAATT+AGG - chr8_1:65883975-65883994 Msa1208020:CDS 35.0%
! TTGATTGTCAATGTGTTGCT+TGG - chr8_1:65884149-65884168 Msa1208020:intron 35.0%
!! CATTTTTCTAGTACTACCAC+GGG + chr8_1:65884179-65884198 None:intergenic 35.0%
GAGTAGAAAAATGTCTGACA+AGG + chr8_1:65884381-65884400 None:intergenic 35.0%
!! ATGTTATTGCTTTTGTCGGT+TGG - chr8_1:65884685-65884704 Msa1208020:CDS 35.0%
TTAACTAGTTCAAGTCTTCC+AGG + chr8_1:65884909-65884928 None:intergenic 35.0%
! CTGTTGTCATTTGAAAGATG+TGG - chr8_1:65884978-65884997 Msa1208020:intron 35.0%
TATATGCATGCTGGAAATCT+TGG - chr8_1:65885032-65885051 Msa1208020:intron 35.0%
TCCTTCAGATGCAGTAAAAT+GGG + chr8_1:65885064-65885083 None:intergenic 35.0%
ATCCTTCAGATGCAGTAAAA+TGG + chr8_1:65885065-65885084 None:intergenic 35.0%
AAAACATGTTGATGTTGCGT+TGG - chr8_1:65885107-65885126 Msa1208020:five_prime_UTR 35.0%
AAACATGTTGATGTTGCGTT+GGG - chr8_1:65885108-65885127 Msa1208020:five_prime_UTR 35.0%
TGAAATTGCGATTGAGAATG+GGG + chr8_1:65882941-65882960 None:intergenic 35.0%
GATGAAATTGCGATTGAGAA+TGG + chr8_1:65882943-65882962 None:intergenic 35.0%
!! TCAGATCGGTGTTATTCTTA+GGG - chr8_1:65883250-65883269 Msa1208020:intron 35.0%
GTTATTCTTAGGGATTCTCA+TGG - chr8_1:65883260-65883279 Msa1208020:intron 35.0%
GCTCAAGTTAAGTTTATCAC+TGG - chr8_1:65883287-65883306 Msa1208020:intron 35.0%
TTATTTACATATGGCGTGTG+TGG - chr8_1:65883508-65883527 Msa1208020:intron 35.0%
CAGGTATAGCTTATGAAAAC+AGG - chr8_1:65883743-65883762 Msa1208020:intron 35.0%
!!! TTTCTTTTGGGGTTGATTGT+AGG - chr8_1:65883914-65883933 Msa1208020:CDS 35.0%
TCTGTACCATTTGATCAAGA+AGG - chr8_1:65883961-65883980 Msa1208020:CDS 35.0%
AAACTGCCTTCTTGATCAAA+TGG + chr8_1:65883970-65883989 None:intergenic 35.0%
TCAAGAAGGCAGTTTCAATT+AGG - chr8_1:65883975-65883994 Msa1208020:CDS 35.0%
! TTGATTGTCAATGTGTTGCT+TGG - chr8_1:65884149-65884168 Msa1208020:intron 35.0%
!! CATTTTTCTAGTACTACCAC+GGG + chr8_1:65884179-65884198 None:intergenic 35.0%
GAGTAGAAAAATGTCTGACA+AGG + chr8_1:65884381-65884400 None:intergenic 35.0%
!! ATGTTATTGCTTTTGTCGGT+TGG - chr8_1:65884685-65884704 Msa1208020:CDS 35.0%
TTAACTAGTTCAAGTCTTCC+AGG + chr8_1:65884909-65884928 None:intergenic 35.0%
! CTGTTGTCATTTGAAAGATG+TGG - chr8_1:65884978-65884997 Msa1208020:intron 35.0%
TATATGCATGCTGGAAATCT+TGG - chr8_1:65885032-65885051 Msa1208020:intron 35.0%
TCCTTCAGATGCAGTAAAAT+GGG + chr8_1:65885064-65885083 None:intergenic 35.0%
ATCCTTCAGATGCAGTAAAA+TGG + chr8_1:65885065-65885084 None:intergenic 35.0%
AAAACATGTTGATGTTGCGT+TGG - chr8_1:65885107-65885126 Msa1208020:five_prime_UTR 35.0%
AAACATGTTGATGTTGCGTT+GGG - chr8_1:65885108-65885127 Msa1208020:five_prime_UTR 35.0%
CTCAAAGCTTCAGCAATCAT+GGG - chr8_1:65882884-65882903 Msa1208020:three_prime_UTR 40.0%
TCAAAGCTTCAGCAATCATG+GGG - chr8_1:65882885-65882904 Msa1208020:three_prime_UTR 40.0%
! CCTTTTGTATGGTAAAGCAG+AGG + chr8_1:65883061-65883080 None:intergenic 40.0%
CCTCTGCTTTACCATACAAA+AGG - chr8_1:65883058-65883077 Msa1208020:three_prime_UTR 40.0%
AGAATAACACCGATCTGAGA+TGG + chr8_1:65883248-65883267 None:intergenic 40.0%
!! CTCAGATCGGTGTTATTCTT+AGG - chr8_1:65883249-65883268 Msa1208020:intron 40.0%
CAAAATCCTTAGGATCCTCA+AGG - chr8_1:65883313-65883332 Msa1208020:intron 40.0%
GCTCTCTTAATCAGTTTCAC+AGG + chr8_1:65883569-65883588 None:intergenic 40.0%
TACAGATCCTCAGGAATTTC+CGG + chr8_1:65883947-65883966 None:intergenic 40.0%
ATCAAATGGTACAGATCCTC+AGG + chr8_1:65883956-65883975 None:intergenic 40.0%
!! CAATTAGGAAGCATTTGGAG+AGG - chr8_1:65883990-65884009 Msa1208020:CDS 40.0%
ACTTGGAGTCCTTATCCTTT+CGG + chr8_1:65884018-65884037 None:intergenic 40.0%
CACAAGAATCAACCTGAACT+TGG + chr8_1:65884035-65884054 None:intergenic 40.0%
!! CAAGTTCAGGTTGATTCTTG+TGG - chr8_1:65884033-65884052 Msa1208020:CDS 40.0%
TCTTGTAATAGCGAGCAAGA+CGG + chr8_1:65884072-65884091 None:intergenic 40.0%
! ACAAAGAAGCGCATCAAACA+AGG + chr8_1:65884601-65884620 None:intergenic 40.0%
CTAAAATTCTAGCATCAGGC+AGG + chr8_1:65884641-65884660 None:intergenic 40.0%
! CTGCCTGATGCTAGAATTTT+AGG - chr8_1:65884639-65884658 Msa1208020:intron 40.0%
! TTTGGTTTCATGATCAGTCC+TGG - chr8_1:65884888-65884907 Msa1208020:CDS 40.0%
!! ATGTGGCTGACTTCAGTTTT+TGG - chr8_1:65884995-65885014 Msa1208020:intron 40.0%
! ACCCATTTTACTGCATCTGA+AGG - chr8_1:65885060-65885079 Msa1208020:intron 40.0%
CATCTGAAGGATACGTTGTT+TGG - chr8_1:65885073-65885092 Msa1208020:intron 40.0%
CTCAAAGCTTCAGCAATCAT+GGG - chr8_1:65882884-65882903 Msa1208020:three_prime_UTR 40.0%
TCAAAGCTTCAGCAATCATG+GGG - chr8_1:65882885-65882904 Msa1208020:three_prime_UTR 40.0%
! CCTTTTGTATGGTAAAGCAG+AGG + chr8_1:65883061-65883080 None:intergenic 40.0%
CCTCTGCTTTACCATACAAA+AGG - chr8_1:65883058-65883077 Msa1208020:three_prime_UTR 40.0%
AGAATAACACCGATCTGAGA+TGG + chr8_1:65883248-65883267 None:intergenic 40.0%
!! CTCAGATCGGTGTTATTCTT+AGG - chr8_1:65883249-65883268 Msa1208020:intron 40.0%
CAAAATCCTTAGGATCCTCA+AGG - chr8_1:65883313-65883332 Msa1208020:intron 40.0%
GCTCTCTTAATCAGTTTCAC+AGG + chr8_1:65883569-65883588 None:intergenic 40.0%
TACAGATCCTCAGGAATTTC+CGG + chr8_1:65883947-65883966 None:intergenic 40.0%
ATCAAATGGTACAGATCCTC+AGG + chr8_1:65883956-65883975 None:intergenic 40.0%
!! CAATTAGGAAGCATTTGGAG+AGG - chr8_1:65883990-65884009 Msa1208020:CDS 40.0%
ACTTGGAGTCCTTATCCTTT+CGG + chr8_1:65884018-65884037 None:intergenic 40.0%
CACAAGAATCAACCTGAACT+TGG + chr8_1:65884035-65884054 None:intergenic 40.0%
!! CAAGTTCAGGTTGATTCTTG+TGG - chr8_1:65884033-65884052 Msa1208020:CDS 40.0%
TCTTGTAATAGCGAGCAAGA+CGG + chr8_1:65884072-65884091 None:intergenic 40.0%
! ACAAAGAAGCGCATCAAACA+AGG + chr8_1:65884601-65884620 None:intergenic 40.0%
CTAAAATTCTAGCATCAGGC+AGG + chr8_1:65884641-65884660 None:intergenic 40.0%
! CTGCCTGATGCTAGAATTTT+AGG - chr8_1:65884639-65884658 Msa1208020:intron 40.0%
! TTTGGTTTCATGATCAGTCC+TGG - chr8_1:65884888-65884907 Msa1208020:CDS 40.0%
!! ATGTGGCTGACTTCAGTTTT+TGG - chr8_1:65884995-65885014 Msa1208020:intron 40.0%
! ACCCATTTTACTGCATCTGA+AGG - chr8_1:65885060-65885079 Msa1208020:intron 40.0%
CATCTGAAGGATACGTTGTT+TGG - chr8_1:65885073-65885092 Msa1208020:intron 40.0%
GCTCAAAGCTTCAGCAATCA+TGG - chr8_1:65882883-65882902 Msa1208020:three_prime_UTR 45.0%
TTGCGATTGAGAATGGGGAA+TGG + chr8_1:65882936-65882955 None:intergenic 45.0%
GGTTTGACTCCATCTCAGAT+CGG - chr8_1:65883236-65883255 Msa1208020:intron 45.0%
TCACTGGCAGCAAAATCCTT+AGG - chr8_1:65883303-65883322 Msa1208020:intron 45.0%
AGAACATACCATGAGCCTTG+AGG + chr8_1:65883331-65883350 None:intergenic 45.0%
GTTGATTGTAGGACTTGCAC+CGG - chr8_1:65883925-65883944 Msa1208020:CDS 45.0%
AGGATAAGGACTCCAAGTTC+AGG - chr8_1:65884020-65884039 Msa1208020:CDS 45.0%
CTTACTACTTCCAGACTGGT+GGG + chr8_1:65884108-65884127 None:intergenic 45.0%
ACTTACTACTTCCAGACTGG+TGG + chr8_1:65884109-65884128 None:intergenic 45.0%
GGTACTTACTACTTCCAGAC+TGG + chr8_1:65884112-65884131 None:intergenic 45.0%
ATCAACAACTGCCAGCACTT+TGG - chr8_1:65884782-65884801 Msa1208020:intron 45.0%
TCTCTAAGCAACCAAAGTGC+TGG + chr8_1:65884796-65884815 None:intergenic 45.0%
TGTTGATGTTGCGTTGGGTT+TGG - chr8_1:65885113-65885132 Msa1208020:five_prime_UTR 45.0%
GCTCAAAGCTTCAGCAATCA+TGG - chr8_1:65882883-65882902 Msa1208020:three_prime_UTR 45.0%
TTGCGATTGAGAATGGGGAA+TGG + chr8_1:65882936-65882955 None:intergenic 45.0%
GGTTTGACTCCATCTCAGAT+CGG - chr8_1:65883236-65883255 Msa1208020:intron 45.0%
TCACTGGCAGCAAAATCCTT+AGG - chr8_1:65883303-65883322 Msa1208020:intron 45.0%
AGAACATACCATGAGCCTTG+AGG + chr8_1:65883331-65883350 None:intergenic 45.0%
GTTGATTGTAGGACTTGCAC+CGG - chr8_1:65883925-65883944 Msa1208020:CDS 45.0%
AGGATAAGGACTCCAAGTTC+AGG - chr8_1:65884020-65884039 Msa1208020:CDS 45.0%
CTTACTACTTCCAGACTGGT+GGG + chr8_1:65884108-65884127 None:intergenic 45.0%
ACTTACTACTTCCAGACTGG+TGG + chr8_1:65884109-65884128 None:intergenic 45.0%
GGTACTTACTACTTCCAGAC+TGG + chr8_1:65884112-65884131 None:intergenic 45.0%
ATCAACAACTGCCAGCACTT+TGG - chr8_1:65884782-65884801 Msa1208020:intron 45.0%
TCTCTAAGCAACCAAAGTGC+TGG + chr8_1:65884796-65884815 None:intergenic 45.0%
TGTTGATGTTGCGTTGGGTT+TGG - chr8_1:65885113-65885132 Msa1208020:five_prime_UTR 45.0%
AGCTGCGCGCTTTGTGATTA+GGG + chr8_1:65882866-65882885 None:intergenic 50.0%
ATCATGGGGCGTATGCATAG+TGG - chr8_1:65882899-65882918 Msa1208020:three_prime_UTR 50.0%
! CCTGGTGCAGACCTTTTGTA+TGG + chr8_1:65883072-65883091 None:intergenic 50.0%
CCATACAAAAGGTCTGCACC+AGG - chr8_1:65883069-65883088 Msa1208020:three_prime_UTR 50.0%
ACAAAAGGTCTGCACCAGGA+TGG - chr8_1:65883073-65883092 Msa1208020:three_prime_UTR 50.0%
CATGAGCCTTGAGGATCCTA+AGG + chr8_1:65883322-65883341 None:intergenic 50.0%
CTTAGGATCCTCAAGGCTCA+TGG - chr8_1:65883320-65883339 Msa1208020:intron 50.0%
ACTTGCACCGGAAATTCCTG+AGG - chr8_1:65883937-65883956 Msa1208020:CDS 50.0%
GCATTTGGAGAGGAACCGAA+AGG - chr8_1:65884000-65884019 Msa1208020:CDS 50.0%
GGAGAGGAACCGAAAGGATA+AGG - chr8_1:65884006-65884025 Msa1208020:CDS 50.0%
TGTAATAGCGAGCAAGACGG+TGG + chr8_1:65884069-65884088 None:intergenic 50.0%
TGTCTTCGTGTTTGCTTCCG+TGG - chr8_1:65884462-65884481 Msa1208020:intron 50.0%
!! TGCTGTTCTGCAGTCGCTTT+TGG - chr8_1:65884838-65884857 Msa1208020:intron 50.0%
AGCTGCGCGCTTTGTGATTA+GGG + chr8_1:65882866-65882885 None:intergenic 50.0%
ATCATGGGGCGTATGCATAG+TGG - chr8_1:65882899-65882918 Msa1208020:three_prime_UTR 50.0%
! CCTGGTGCAGACCTTTTGTA+TGG + chr8_1:65883072-65883091 None:intergenic 50.0%
CCATACAAAAGGTCTGCACC+AGG - chr8_1:65883069-65883088 Msa1208020:three_prime_UTR 50.0%
ACAAAAGGTCTGCACCAGGA+TGG - chr8_1:65883073-65883092 Msa1208020:three_prime_UTR 50.0%
CATGAGCCTTGAGGATCCTA+AGG + chr8_1:65883322-65883341 None:intergenic 50.0%
CTTAGGATCCTCAAGGCTCA+TGG - chr8_1:65883320-65883339 Msa1208020:intron 50.0%
ACTTGCACCGGAAATTCCTG+AGG - chr8_1:65883937-65883956 Msa1208020:CDS 50.0%
GCATTTGGAGAGGAACCGAA+AGG - chr8_1:65884000-65884019 Msa1208020:CDS 50.0%
GGAGAGGAACCGAAAGGATA+AGG - chr8_1:65884006-65884025 Msa1208020:CDS 50.0%
TGTAATAGCGAGCAAGACGG+TGG + chr8_1:65884069-65884088 None:intergenic 50.0%
TGTCTTCGTGTTTGCTTCCG+TGG - chr8_1:65884462-65884481 Msa1208020:intron 50.0%
!! TGCTGTTCTGCAGTCGCTTT+TGG - chr8_1:65884838-65884857 Msa1208020:intron 50.0%
GAGCTGCGCGCTTTGTGATT+AGG + chr8_1:65882867-65882886 None:intergenic 55.0%
ATGGGGCGTATGCATAGTGG+CGG - chr8_1:65882902-65882921 Msa1208020:three_prime_UTR 55.0%
GTAGAGGTCTTGAGCCATCC+TGG + chr8_1:65883090-65883109 None:intergenic 55.0%
!! TGTGTTGCTTGGTTTGCCCG+TGG - chr8_1:65884160-65884179 Msa1208020:intron 55.0%
TCTAGCATCAGGCAGGCATG+TGG + chr8_1:65884634-65884653 None:intergenic 55.0%
GAGCTGCGCGCTTTGTGATT+AGG + chr8_1:65882867-65882886 None:intergenic 55.0%
ATGGGGCGTATGCATAGTGG+CGG - chr8_1:65882902-65882921 Msa1208020:three_prime_UTR 55.0%
GTAGAGGTCTTGAGCCATCC+TGG + chr8_1:65883090-65883109 None:intergenic 55.0%
!! TGTGTTGCTTGGTTTGCCCG+TGG - chr8_1:65884160-65884179 Msa1208020:intron 55.0%
TCTAGCATCAGGCAGGCATG+TGG + chr8_1:65884634-65884653 None:intergenic 55.0%
TGGGGCGTATGCATAGTGGC+GGG - chr8_1:65882903-65882922 Msa1208020:three_prime_UTR 60.0%
CCAGACTGGTGGGAGCTTCT+TGG + chr8_1:65884098-65884117 None:intergenic 60.0%
CCAAGAAGCTCCCACCAGTC+TGG - chr8_1:65884095-65884114 Msa1208020:intron 60.0%
TGGGGCGTATGCATAGTGGC+GGG - chr8_1:65882903-65882922 Msa1208020:three_prime_UTR 60.0%
CCAGACTGGTGGGAGCTTCT+TGG + chr8_1:65884098-65884117 None:intergenic 60.0%
CCAAGAAGCTCCCACCAGTC+TGG - chr8_1:65884095-65884114 Msa1208020:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65882820 65885180 65882820 ID=Msa1208020;Name=Msa1208020
chr8_1 mRNA 65882820 65885180 65882820 ID=Msa1208020-mRNA-1;Parent=Msa1208020;Name=Msa1208020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|1|0.8|5|368|151
chr8_1 exon 65882820 65883221 65882820 ID=Msa1208020-mRNA-1:exon:21658;Parent=Msa1208020-mRNA-1
chr8_1 exon 65883878 65884064 65883878 ID=Msa1208020-mRNA-1:exon:21657;Parent=Msa1208020-mRNA-1
chr8_1 exon 65884659 65884797 65884659 ID=Msa1208020-mRNA-1:exon:21656;Parent=Msa1208020-mRNA-1
chr8_1 exon 65884884 65884956 65884884 ID=Msa1208020-mRNA-1:exon:21655;Parent=Msa1208020-mRNA-1
chr8_1 exon 65885076 65885180 65885076 ID=Msa1208020-mRNA-1:exon:21654;Parent=Msa1208020-mRNA-1
chr8_1 five_prime_UTR 65885099 65885180 65885099 ID=Msa1208020-mRNA-1:five_prime_utr;Parent=Msa1208020-mRNA-1
chr8_1 CDS 65885076 65885098 65885076 ID=Msa1208020-mRNA-1:cds;Parent=Msa1208020-mRNA-1
chr8_1 CDS 65884884 65884956 65884884 ID=Msa1208020-mRNA-1:cds;Parent=Msa1208020-mRNA-1
chr8_1 CDS 65884659 65884797 65884659 ID=Msa1208020-mRNA-1:cds;Parent=Msa1208020-mRNA-1
chr8_1 CDS 65883878 65884064 65883878 ID=Msa1208020-mRNA-1:cds;Parent=Msa1208020-mRNA-1
chr8_1 CDS 65883188 65883221 65883188 ID=Msa1208020-mRNA-1:cds;Parent=Msa1208020-mRNA-1
chr8_1 three_prime_UTR 65882820 65883187 65882820 ID=Msa1208020-mRNA-1:three_prime_utr;Parent=Msa1208020-mRNA-1
Gene Sequence

>Msa1208020

ATGGGGCGTATGCATAGTGGCGGTAAGGGTATTTCATCCTCTGCTTTACCATACAAAAGGTCTGCACCAGGATGGCTCAAGACCTCTACACAAGATGTGGAAGAGACTATTTGCAAGTTTGCAAAGAAGGGTTTGACTCCATCTCAGATCGGTGTTATTCTTAGGGATTCTCATGGAATTGCTCAAGTTAAGTTTATCACTGGCAGCAAAATCCTTAGGATCCTCAAGGCTCATGGACTTGCACCGGAAATTCCTGAGGATCTGTACCATTTGATCAAGAAGGCAGTTTCAATTAGGAAGCATTTGGAGAGGAACCGAAAGGATAAGGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGAATCCACCGTCTTGCTCGCTATTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTACGAATCAACAACTGCCAGCACTTTGGTTGCTTAG

Protein sequence

>Msa1208020

MGRMHSGGKGISSSALPYKRSAPGWLKTSTQDVEETICKFAKKGLTPSQIGVILRDSHGIAQVKFITGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA*