AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207310 MtrunA17_Chr4g0056191 99.559 227 1 0 1 227 1 227 2.18e-167 460
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207310 AT3G13200.1 73.913 230 57 1 1 227 1 230 5.46e-105 303

Find 65 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAATTGCTTTCACAAAT+AGG 0.209078 8_1:+64734349 None:intergenic
TTTAGATCCAAATCATAAAT+TGG 0.236784 8_1:+64734411 None:intergenic
TATAATTGCTTTCACAAATA+GGG 0.271523 8_1:+64734350 None:intergenic
ACGTTGTCCAATTTATGATT+TGG 0.308262 8_1:-64734418 Msa1207310:three_prime_UTR
GCCTTGTTCGTTTCCACCTT+TGG 0.329362 8_1:+64737873 None:intergenic
AATGTAATATATTGTGTTGA+TGG 0.340079 8_1:-64734482 Msa1207310:three_prime_UTR
TGTCAGAAACCTGAGTTGTT+TGG 0.354566 8_1:-64734536 Msa1207310:three_prime_UTR
TATAAACCATAAGTTTCTTC+AGG 0.365747 8_1:+64734511 None:intergenic
GGATGACACTGAAGCTTTGC+TGG 0.370195 8_1:-64735827 Msa1207310:CDS
TTGGAGCCTGAAGAAACTTA+TGG 0.386666 8_1:-64734517 Msa1207310:three_prime_UTR
GATGAATCGCTTTGCGAGCT+TGG 0.402778 8_1:+64734623 None:intergenic
CATCTTTCAGTGTCAAAAGA+AGG 0.407995 8_1:-64735217 Msa1207310:intron
TCCTTCCTTTCTTCAATCAC+CGG 0.423596 8_1:-64737971 Msa1207310:five_prime_UTR
TCCATGCTTTGACAGATGAC+AGG 0.425910 8_1:-64736585 Msa1207310:intron
CCTTTGGCCGGTGCCCATGT+TGG 0.438499 8_1:+64737889 None:intergenic
TTGGGTACTTAGCAGGTTAG+AGG 0.440145 8_1:-64734311 Msa1207310:three_prime_UTR
TGCGAGCTTGGTTTCTCCAC+GGG 0.448028 8_1:+64734635 None:intergenic
CTTACTTCATGTATTTGTGC+AGG 0.449310 8_1:+64734565 None:intergenic
AATGTACTTGGGTACTTAGC+AGG 0.450760 8_1:-64734318 Msa1207310:three_prime_UTR
TGTTCGTTTCCACCTTTGGC+CGG 0.457672 8_1:+64737877 None:intergenic
ATGTCGGGTTATTGATCAAA+GGG 0.461011 8_1:+64735237 None:intergenic
TTGACAGATGACAGGGATCA+TGG 0.467290 8_1:-64736577 Msa1207310:intron
ATTTGTGCAGGAATTTCCTA+TGG 0.474919 8_1:+64734577 None:intergenic
AGAGGAAGATCTTAAAGTAA+AGG 0.493826 8_1:-64735282 Msa1207310:CDS
GATTCATCAATGACACCATC+AGG 0.497137 8_1:-64734608 Msa1207310:CDS
CTTCAGGCTCCAAACAACTC+AGG 0.508450 8_1:+64734527 None:intergenic
TTGCGAGCTTGGTTTCTCCA+CGG 0.514076 8_1:+64734634 None:intergenic
TTGAACAAATAAAGAAGGAA+AGG 0.524193 8_1:-64735798 Msa1207310:CDS
CGCTAGACCAACATGGGCAC+CGG 0.524224 8_1:-64737896 Msa1207310:CDS
TGAACAAATAAAGAAGGAAA+GGG 0.539554 8_1:-64735797 Msa1207310:CDS
TGAGCTTGAACAAATAAAGA+AGG 0.544665 8_1:-64735803 Msa1207310:CDS
CCATGCTTTGACAGATGACA+GGG 0.549331 8_1:-64736584 Msa1207310:intron
AATAAAGAAGGAAAGGGCAC+AGG 0.549972 8_1:-64735791 Msa1207310:CDS
GATGACAGGGATCATGGAAG+GGG 0.552181 8_1:-64736571 Msa1207310:CDS
GAAAGACGGGCAGGATACAC+AGG 0.556936 8_1:-64736821 Msa1207310:CDS
CGACCGCCGCTAGACCAACA+TGG 0.559680 8_1:-64737903 Msa1207310:CDS
TCCGGTGATTGAAGAAAGGA+AGG 0.560695 8_1:+64737970 None:intergenic
GATGTCGGGTTATTGATCAA+AGG 0.561231 8_1:+64735236 None:intergenic
ACATGGGCACCGGCCAAAGG+TGG 0.565377 8_1:-64737886 Msa1207310:CDS
GACAGGGATCATGGAAGGGG+CGG 0.566656 8_1:-64736568 Msa1207310:CDS
GGAAGATCTTAAAGTAAAGG+AGG 0.567127 8_1:-64735279 Msa1207310:CDS
CGCACACCACTCTCAAACCT+AGG 0.567486 8_1:-64737798 Msa1207310:intron
CAGATGACAGGGATCATGGA+AGG 0.571029 8_1:-64736573 Msa1207310:CDS
CACAGGATGAGTTAAAGAGA+AGG 0.579428 8_1:-64736804 Msa1207310:CDS
GCCAAAGGTGGAAACGAACA+AGG 0.588363 8_1:-64737874 Msa1207310:CDS
CCATCAGGAATGATTTCCAT+AGG 0.597909 8_1:-64734593 Msa1207310:CDS
AGATGACAGGGATCATGGAA+GGG 0.602143 8_1:-64736572 Msa1207310:CDS
CCTATGGAAATCATTCCTGA+TGG 0.606526 8_1:+64734593 None:intergenic
CAGTGATGACGACGACGATG+AGG 0.607786 8_1:-64735848 Msa1207310:CDS
GTATAGGTGGGATGATGATG+TGG 0.611321 8_1:-64734673 Msa1207310:intron
GACCGCCGCTAGACCAACAT+GGG 0.618179 8_1:-64737902 Msa1207310:CDS
CGGTGCCCATGTTGGTCTAG+CGG 0.624635 8_1:+64737897 None:intergenic
AGCTTGATGAACGTGAAAGG+AGG 0.626044 8_1:-64736768 Msa1207310:CDS
GCAGGAACAACAACAACAAG+AGG 0.626881 8_1:-64735300 Msa1207310:intron
GGCACAGGAAAAGCTGCGCA+AGG 0.629250 8_1:-64735776 Msa1207310:intron
AAGTCAACAGTGATGATGAA+AGG 0.633175 8_1:-64736318 Msa1207310:intron
ATGAGCTTGATGAACGTGAA+AGG 0.637079 8_1:-64736771 Msa1207310:CDS
CGGCGGTCGTCATCGGATCG+AGG 0.639598 8_1:+64737917 None:intergenic
CAATCACCGGAAAACAAAGT+CGG 0.651013 8_1:-64737958 Msa1207310:five_prime_UTR
AAGGAGGCAGAGCTTATGCG+TGG 0.661072 8_1:-64735263 Msa1207310:CDS
AACCTACCTAGGTTTGAGAG+TGG 0.662167 8_1:+64737792 None:intergenic
ACTTGGTTGGAACACACAAG+TGG 0.664795 8_1:+64734267 None:intergenic
TCATCTGCATCAACACTGCG+TGG 0.670152 8_1:+64736352 None:intergenic
GTTCATCAAGCTCATCACGT+AGG 0.739279 8_1:+64736779 None:intergenic
AAAGGTGGAAACGAACAAGG+CGG 0.806134 8_1:-64737871 Msa1207310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAATTTACATTTTAAATAA+GGG + chr8_1:64736931-64736950 None:intergenic 10.0%
!!! CATTTTTTTAAAAATTTGTT+TGG - chr8_1:64737562-64737581 Msa1207310:intron 10.0%
!! ATCAAAATCAACAAAAAATT+GGG + chr8_1:64734497-64734516 None:intergenic 15.0%
!! AATCAAAATCAACAAAAAAT+TGG + chr8_1:64734498-64734517 None:intergenic 15.0%
!! TAATTCAAATCAAATTTGAA+GGG + chr8_1:64734931-64734950 None:intergenic 15.0%
!! TCAAAAAATAAATCGTATAA+TGG - chr8_1:64735521-64735540 Msa1207310:intron 15.0%
!!! ATAACGTTTTTTTTTTTAAG+AGG + chr8_1:64736182-64736201 None:intergenic 15.0%
!!! GACAATTTACATTTTAAATA+AGG + chr8_1:64736932-64736951 None:intergenic 15.0%
!! TAATTTGAATCTTGATATTT+AGG - chr8_1:64737295-64737314 Msa1207310:intron 15.0%
!!! TTTAAAAATTTGTTTGGTAT+AGG - chr8_1:64737568-64737587 Msa1207310:intron 15.0%
!!! ACACAATATATTACATTTTA+AGG + chr8_1:64737772-64737791 None:intergenic 15.0%
!! ATAAAAATTACAAATGTACT+TGG - chr8_1:64737927-64737946 Msa1207310:exon 15.0%
!! TAAAAATTACAAATGTACTT+GGG - chr8_1:64737928-64737947 Msa1207310:exon 15.0%
!! TCAAAATCAACAAAAAATTG+GGG + chr8_1:64734496-64734515 None:intergenic 20.0%
!! TATGGGTAATTAAAATTCAT+TGG - chr8_1:64734622-64734641 Msa1207310:CDS 20.0%
!!! TTGATAAGTTAGTTTTTTCA+TGG - chr8_1:64734702-64734721 Msa1207310:intron 20.0%
!!! TGATAAGTTAGTTTTTTCAT+GGG - chr8_1:64734703-64734722 Msa1207310:intron 20.0%
!! AATTTCTCAATGTTATTGAT+AGG - chr8_1:64734726-64734745 Msa1207310:intron 20.0%
!! AATTCAAATCAAATTTGAAG+GGG + chr8_1:64734930-64734949 None:intergenic 20.0%
!! CTAATTCAAATCAAATTTGA+AGG + chr8_1:64734932-64734951 None:intergenic 20.0%
!!! CTTCAAATTTGATTTGAATT+AGG - chr8_1:64734930-64734949 Msa1207310:intron 20.0%
!! ACATTAAGTGATATAATTCA+TGG + chr8_1:64735040-64735059 None:intergenic 20.0%
!!! TAATACCTTCTAAAAATAGA+TGG + chr8_1:64735715-64735734 None:intergenic 20.0%
!! GACTGAATATAAATATATCA+TGG + chr8_1:64735823-64735842 None:intergenic 20.0%
!! TTTATATGCATGTATCATTT+AGG - chr8_1:64736006-64736025 Msa1207310:intron 20.0%
!! TGCTACTATTTACAAAAATA+AGG + chr8_1:64736364-64736383 None:intergenic 20.0%
!!! AATTAGATAGTTTTTGTTGA+AGG - chr8_1:64736749-64736768 Msa1207310:CDS 20.0%
!!! ATTAGATAGTTTTTGTTGAA+GGG - chr8_1:64736750-64736769 Msa1207310:CDS 20.0%
!!! ATCTATCTTTTACAGTAAAT+AGG - chr8_1:64737362-64737381 Msa1207310:intron 20.0%
!! AATGTAATATATTGTGTTGA+TGG - chr8_1:64737775-64737794 Msa1207310:intron 20.0%
!! TTTAGATCCAAATCATAAAT+TGG + chr8_1:64737849-64737868 None:intergenic 20.0%
!! TATAATTGCTTTCACAAATA+GGG + chr8_1:64737910-64737929 None:intergenic 20.0%
!! TTATAATTGCTTTCACAAAT+AGG + chr8_1:64737911-64737930 None:intergenic 20.0%
!!! ATCTCTTGAAGAGTATTTTT+GGG + chr8_1:64734432-64734451 None:intergenic 25.0%
!!! TATCTCTTGAAGAGTATTTT+TGG + chr8_1:64734433-64734452 None:intergenic 25.0%
! AAAATCAACAAAAAATTGGG+GGG + chr8_1:64734494-64734513 None:intergenic 25.0%
! CAAAATCAACAAAAAATTGG+GGG + chr8_1:64734495-64734514 None:intergenic 25.0%
! CATGGTATTACATAGATAAA+AGG + chr8_1:64734553-64734572 None:intergenic 25.0%
! TCGAATTTATTCGTGAAATT+AGG - chr8_1:64734579-64734598 Msa1207310:CDS 25.0%
!! GTTAAGTTAATTTGATCTTG+AGG - chr8_1:64734659-64734678 Msa1207310:CDS 25.0%
! GTTACTGTAATCTGATAATA+CGG - chr8_1:64734791-64734810 Msa1207310:intron 25.0%
! CTCGATAAAATGATAACATT+TGG + chr8_1:64734861-64734880 None:intergenic 25.0%
! ATTCAAATCAAATTTGAAGG+GGG + chr8_1:64734929-64734948 None:intergenic 25.0%
! CTACTAAGTGATATAATTTG+GGG + chr8_1:64735008-64735027 None:intergenic 25.0%
! GCTACTAAGTGATATAATTT+GGG + chr8_1:64735009-64735028 None:intergenic 25.0%
! TGCTACTAAGTGATATAATT+TGG + chr8_1:64735010-64735029 None:intergenic 25.0%
! CTTAATCATTTAAAAGAGAG+CGG + chr8_1:64735327-64735346 None:intergenic 25.0%
!! GTTGCATTTATACCTTTTAT+AGG - chr8_1:64735414-64735433 Msa1207310:intron 25.0%
!! TATACCTTTTATAGGAAAGA+CGG - chr8_1:64735422-64735441 Msa1207310:intron 25.0%
!!! ATGATGAAAGGTTGATAATT+TGG - chr8_1:64735951-64735970 Msa1207310:intron 25.0%
! AATAAAATAACAACCCTTGA+TGG + chr8_1:64736042-64736061 None:intergenic 25.0%
!!! AATATGCATGCTATTTCTAT+TGG - chr8_1:64736104-64736123 Msa1207310:intron 25.0%
!! TTAAGCATGTCTTCTTTTAA+GGG + chr8_1:64736226-64736245 None:intergenic 25.0%
!! ATTAAGCATGTCTTCTTTTA+AGG + chr8_1:64736227-64736246 None:intergenic 25.0%
! TTGAACAAATAAAGAAGGAA+AGG - chr8_1:64736459-64736478 Msa1207310:intron 25.0%
! TGAACAAATAAAGAAGGAAA+GGG - chr8_1:64736460-64736479 Msa1207310:intron 25.0%
! AAGCTAATTAGAATGTACAT+CGG - chr8_1:64736648-64736667 Msa1207310:intron 25.0%
!! TTAGATAGTTTTTGTTGAAG+GGG - chr8_1:64736751-64736770 Msa1207310:CDS 25.0%
! ACAAGAATTGAAGAATAGAA+TGG + chr8_1:64736812-64736831 None:intergenic 25.0%
! ATTCTATTCTTCAATTCTTG+TGG - chr8_1:64736811-64736830 Msa1207310:CDS 25.0%
! TTCTATTCTTCAATTCTTGT+GGG - chr8_1:64736812-64736831 Msa1207310:CDS 25.0%
!! AAGGTATTTGTTACTAAGAT+AGG + chr8_1:64736846-64736865 None:intergenic 25.0%
!! TTCAGTTAAATAAGTCCTTT+TGG + chr8_1:64737101-64737120 None:intergenic 25.0%
! AGAAAAATGGCAAACTATTA+GGG + chr8_1:64737125-64737144 None:intergenic 25.0%
! AAGAAAAATGGCAAACTATT+AGG + chr8_1:64737126-64737145 None:intergenic 25.0%
!!! ATCATTGACTTTTCAATCAA+CGG + chr8_1:64737194-64737213 None:intergenic 25.0%
!!! ATTATTGATTTTCCAATCAG+TGG - chr8_1:64737269-64737288 Msa1207310:intron 25.0%
! TTCAAATTATAACCACTGAT+TGG + chr8_1:64737284-64737303 None:intergenic 25.0%
! TTTGAATCTTGATATTTAGG+TGG - chr8_1:64737298-64737317 Msa1207310:intron 25.0%
!!! TATTTTTCAAGCGTTATTTG+TGG - chr8_1:64737398-64737417 Msa1207310:intron 25.0%
!!! TGGAAGTATTAATATGCAAA+TGG - chr8_1:64737457-64737476 Msa1207310:intron 25.0%
!!! ACTTAAAACTTTAAAGTGGT+TGG + chr8_1:64737495-64737514 None:intergenic 25.0%
!! AGTCACTTAAAACTTTAAAG+TGG + chr8_1:64737499-64737518 None:intergenic 25.0%
!! AAAAATTTGTTTGGTATAGG+TGG - chr8_1:64737571-64737590 Msa1207310:intron 25.0%
!! AAAATTTGTTTGGTATAGGT+GGG - chr8_1:64737572-64737591 Msa1207310:intron 25.0%
! TATAAACCATAAGTTTCTTC+AGG + chr8_1:64737749-64737768 None:intergenic 25.0%
GTGATGTATTGTCATATAGT+AGG - chr8_1:64734748-64734767 Msa1207310:intron 30.0%
CTTATTGTAAACCTGTACTT+AGG - chr8_1:64734825-64734844 Msa1207310:intron 30.0%
TAAACCTGTACTTAGGTAAT+TGG - chr8_1:64734832-64734851 Msa1207310:intron 30.0%
!! CTAGTTTTTACAAGAACAGA+AGG - chr8_1:64735064-64735083 Msa1207310:intron 30.0%
AACCATTTCAATGACTATAG+TGG + chr8_1:64735278-64735297 None:intergenic 30.0%
! ATACCTTTTATAGGAAAGAC+GGG - chr8_1:64735423-64735442 Msa1207310:intron 30.0%
AAAATGAAAACTTGTCTCAC+AGG + chr8_1:64735619-64735638 None:intergenic 30.0%
TCCAATTACTATCCAAGAAA+AGG - chr8_1:64735784-64735803 Msa1207310:CDS 30.0%
! TCCTTTTCTTGGATAGTAAT+TGG + chr8_1:64735788-64735807 None:intergenic 30.0%
! TTCTTTTCTTCTCCTTTTCT+TGG + chr8_1:64735799-64735818 None:intergenic 30.0%
TGATGAGTCTTTATCTTAAC+AGG - chr8_1:64735851-64735870 Msa1207310:intron 30.0%
!!! TTTTTTTTAAGAGGACCACA+AGG + chr8_1:64736173-64736192 None:intergenic 30.0%
AAAAAAAACGTTATCACACG+AGG - chr8_1:64736188-64736207 Msa1207310:intron 30.0%
AAAAAAACGTTATCACACGA+GGG - chr8_1:64736189-64736208 Msa1207310:intron 30.0%
! TAAGCATGTCTTCTTTTAAG+GGG + chr8_1:64736225-64736244 None:intergenic 30.0%
TGCATTTAAGTAATCTTCGT+CGG - chr8_1:64736286-64736305 Msa1207310:intron 30.0%
TGAGCTTGAACAAATAAAGA+AGG - chr8_1:64736454-64736473 Msa1207310:intron 30.0%
AGAGTGGTTAGGAATTTATA+AGG - chr8_1:64736683-64736702 Msa1207310:intron 30.0%
GAGTGGTTAGGAATTTATAA+GGG - chr8_1:64736684-64736703 Msa1207310:intron 30.0%
! TCAGATAAATAGAGTACTTG+AGG - chr8_1:64736714-64736733 Msa1207310:intron 30.0%
! CAGATAAATAGAGTACTTGA+GGG - chr8_1:64736715-64736734 Msa1207310:intron 30.0%
ACAAAGAGAATTCTCCTAAA+AGG + chr8_1:64736781-64736800 None:intergenic 30.0%
ACAACTAATTAGCATGCAAA+AGG + chr8_1:64736865-64736884 None:intergenic 30.0%
AATGTAAATTGTCTTTGTGC+AGG - chr8_1:64736939-64736958 Msa1207310:intron 30.0%
AGAGGAAGATCTTAAAGTAA+AGG - chr8_1:64736975-64736994 Msa1207310:intron 30.0%
!!! TGCCATTTTTCTTTAAAGTG+AGG - chr8_1:64737133-64737152 Msa1207310:intron 30.0%
!!! GCCATTTTTCTTTAAAGTGA+GGG - chr8_1:64737134-64737153 Msa1207310:intron 30.0%
! TCCCTCACTTTAAAGAAAAA+TGG + chr8_1:64737138-64737157 None:intergenic 30.0%
ACGTTGTCCAATTTATGATT+TGG - chr8_1:64737839-64737858 Msa1207310:CDS 30.0%
!!! CTTGAAGAGTATTTTTGGGA+AGG + chr8_1:64734428-64734447 None:intergenic 35.0%
GAATAAATTCGAATCGTGCA+TGG + chr8_1:64734571-64734590 None:intergenic 35.0%
TGTGCTTGCTTATCTTGTTA+TGG - chr8_1:64734604-64734623 Msa1207310:CDS 35.0%
! GTGCTTGCTTATCTTGTTAT+GGG - chr8_1:64734605-64734624 Msa1207310:CDS 35.0%
GTATCCAATTACCTAAGTAC+AGG + chr8_1:64734839-64734858 None:intergenic 35.0%
AACAATTTCAGGGAGCAAAT+CGG + chr8_1:64734891-64734910 None:intergenic 35.0%
ATTTGCTCCCTGAAATTGTT+GGG - chr8_1:64734891-64734910 Msa1207310:intron 35.0%
ACCCAATGTCATTCGAAATA+AGG - chr8_1:64735095-64735114 Msa1207310:intron 35.0%
! CCCTTATTTCGAATGACATT+GGG + chr8_1:64735099-64735118 None:intergenic 35.0%
CCCAATGTCATTCGAAATAA+GGG - chr8_1:64735096-64735115 Msa1207310:intron 35.0%
! ACCCTTATTTCGAATGACAT+TGG + chr8_1:64735100-64735119 None:intergenic 35.0%
GCCTATTTGCAAATTTCAAG+CGG - chr8_1:64735128-64735147 Msa1207310:intron 35.0%
CCTATTTGCAAATTTCAAGC+GGG - chr8_1:64735129-64735148 Msa1207310:intron 35.0%
TGTTTACCCTTTGCAATTGA+GGG + chr8_1:64735223-64735242 None:intergenic 35.0%
TTGTTTACCCTTTGCAATTG+AGG + chr8_1:64735224-64735243 None:intergenic 35.0%
CGTACATTATGGGACTAAAA+TGG + chr8_1:64735247-64735266 None:intergenic 35.0%
! TTTTAGTCCCATAATGTACG+AGG - chr8_1:64735247-64735266 Msa1207310:CDS 35.0%
TTTAGTCCCATAATGTACGA+GGG - chr8_1:64735248-64735267 Msa1207310:CDS 35.0%
TGCCACTATAGTCATTGAAA+TGG - chr8_1:64735273-64735292 Msa1207310:CDS 35.0%
ATCATTTAAAAGAGAGCGGA+GGG + chr8_1:64735323-64735342 None:intergenic 35.0%
AATCATTTAAAAGAGAGCGG+AGG + chr8_1:64735324-64735343 None:intergenic 35.0%
! AAGTCAACAGTGATGATGAA+AGG - chr8_1:64735939-64735958 Msa1207310:intron 35.0%
TAGGATTTGTAGAACCATCA+AGG - chr8_1:64736025-64736044 Msa1207310:intron 35.0%
AGGATTTGTAGAACCATCAA+GGG - chr8_1:64736026-64736045 Msa1207310:intron 35.0%
TGTGAATAGTTAGAGTGGTT+AGG - chr8_1:64736672-64736691 Msa1207310:intron 35.0%
GGAAGATCTTAAAGTAAAGG+AGG - chr8_1:64736978-64736997 Msa1207310:intron 35.0%
ATGTCGGGTTATTGATCAAA+GGG + chr8_1:64737023-64737042 None:intergenic 35.0%
! TTTTGACACTGAAAGATGTC+GGG + chr8_1:64737038-64737057 None:intergenic 35.0%
! CTTTTGACACTGAAAGATGT+CGG + chr8_1:64737039-64737058 None:intergenic 35.0%
CATCTTTCAGTGTCAAAAGA+AGG - chr8_1:64737040-64737059 Msa1207310:intron 35.0%
ATATGCAAATGGTCCATAAC+TGG - chr8_1:64737468-64737487 Msa1207310:intron 35.0%
AGATCATGACAGCAGATTAA+TGG + chr8_1:64737542-64737561 None:intergenic 35.0%
ATTTGTGCAGGAATTTCCTA+TGG + chr8_1:64737683-64737702 None:intergenic 35.0%
CTTACTTCATGTATTTGTGC+AGG + chr8_1:64737695-64737714 None:intergenic 35.0%
TCCTTCCTTTCTTCAATCAC+CGG - chr8_1:64734286-64734305 Msa1207310:three_prime_UTR 40.0%
! GTTTTCCGGTGATTGAAGAA+AGG + chr8_1:64734294-64734313 None:intergenic 40.0%
CAATCACCGGAAAACAAAGT+CGG - chr8_1:64734299-64734318 Msa1207310:three_prime_UTR 40.0%
! GATTTGCTCCCTGAAATTGT+TGG - chr8_1:64734890-64734909 Msa1207310:intron 40.0%
TTTGCTCCCTGAAATTGTTG+GGG - chr8_1:64734892-64734911 Msa1207310:intron 40.0%
TCGAATGACATTGGGTAACT+TGG + chr8_1:64735091-64735110 None:intergenic 40.0%
CCCGCTTGAAATTTGCAAAT+AGG + chr8_1:64735132-64735151 None:intergenic 40.0%
TTTACCCTTTGCAATTGAGG+GGG + chr8_1:64735221-64735240 None:intergenic 40.0%
GTTTACCCTTTGCAATTGAG+GGG + chr8_1:64735222-64735241 None:intergenic 40.0%
AGCTTTCCATGTTATCACGT+TGG - chr8_1:64735374-64735393 Msa1207310:intron 40.0%
CATGTTATCACGTTGGTATG+CGG - chr8_1:64735381-64735400 Msa1207310:intron 40.0%
CACAGGATGAGTTAAAGAGA+AGG - chr8_1:64735453-64735472 Msa1207310:intron 40.0%
ATGAGCTTGATGAACGTGAA+AGG - chr8_1:64735486-64735505 Msa1207310:intron 40.0%
GGATTTACTCTTCAACCTTG+TGG - chr8_1:64736155-64736174 Msa1207310:intron 40.0%
TAAATGCATCCAGAGATGCT+AGG + chr8_1:64736274-64736293 None:intergenic 40.0%
! AATAAAGAAGGAAAGGGCAC+AGG - chr8_1:64736466-64736485 Msa1207310:intron 40.0%
TGCCATTGAACCTCTTTAGA+TGG - chr8_1:64736534-64736553 Msa1207310:intron 40.0%
GCCATTGAACCTCTTTAGAT+GGG - chr8_1:64736535-64736554 Msa1207310:intron 40.0%
TCCCATCTAAAGAGGTTCAA+TGG + chr8_1:64736539-64736558 None:intergenic 40.0%
GTTCAATGTCCCATCTAAAG+AGG + chr8_1:64736547-64736566 None:intergenic 40.0%
TAGATGGGACATTGAACTTG+TGG - chr8_1:64736550-64736569 Msa1207310:intron 40.0%
AACACCTCTCTTAGGATAGA+AGG - chr8_1:64736577-64736596 Msa1207310:intron 40.0%
TCGGTTGTGAATAGTTAGAG+TGG - chr8_1:64736667-64736686 Msa1207310:intron 40.0%
! GTTGAAGGGGAAATCCTTTT+AGG - chr8_1:64736764-64736783 Msa1207310:CDS 40.0%
GATGTCGGGTTATTGATCAA+AGG + chr8_1:64737024-64737043 None:intergenic 40.0%
GAACTGCTCACTTAACCAAA+AGG - chr8_1:64737083-64737102 Msa1207310:intron 40.0%
AGTGAGGGAGTCAATTCATT+CGG - chr8_1:64737149-64737168 Msa1207310:intron 40.0%
ACAGTAGTGCAATGGTCAAA+TGG + chr8_1:64737329-64737348 None:intergenic 40.0%
TGCATACAACAGTAGTGCAA+TGG + chr8_1:64737337-64737356 None:intergenic 40.0%
TTCAAGCGTTATTTGTGGTG+TGG - chr8_1:64737403-64737422 Msa1207310:intron 40.0%
! TAAAGTGGTTGGTCCAGTTA+TGG + chr8_1:64737484-64737503 None:intergenic 40.0%
GATTCATCAATGACACCATC+AGG - chr8_1:64737649-64737668 Msa1207310:intron 40.0%
CCTATGGAAATCATTCCTGA+TGG + chr8_1:64737667-64737686 None:intergenic 40.0%
CCATCAGGAATGATTTCCAT+AGG - chr8_1:64737664-64737683 Msa1207310:intron 40.0%
TGTCAGAAACCTGAGTTGTT+TGG - chr8_1:64737721-64737740 Msa1207310:intron 40.0%
TTGGAGCCTGAAGAAACTTA+TGG - chr8_1:64737740-64737759 Msa1207310:intron 40.0%
AATGTACTTGGGTACTTAGC+AGG - chr8_1:64737939-64737958 Msa1207310:five_prime_UTR 40.0%
TCCGGTGATTGAAGAAAGGA+AGG + chr8_1:64734290-64734309 None:intergenic 45.0%
!!! CTGTCACCGACTTTGTTTTC+CGG + chr8_1:64734308-64734327 None:intergenic 45.0%
AAAGGTGGAAACGAACAAGG+CGG - chr8_1:64734386-64734405 Msa1207310:three_prime_UTR 45.0%
! CAAGGCGGTACTCGAATTTT+CGG - chr8_1:64734401-64734420 Msa1207310:three_prime_UTR 45.0%
AACCTACCTAGGTTTGAGAG+TGG + chr8_1:64734468-64734487 None:intergenic 45.0%
TGCTTGACCCTTGCAATTTC+AGG - chr8_1:64735156-64735175 Msa1207310:intron 45.0%
TTGACCCTTGCAATTTCAGG+TGG - chr8_1:64735159-64735178 Msa1207310:intron 45.0%
! TGACCCTTGCAATTTCAGGT+GGG - chr8_1:64735160-64735179 Msa1207310:intron 45.0%
TTCCCCACCTGAAATTGCAA+GGG + chr8_1:64735166-64735185 None:intergenic 45.0%
ATTCCCCACCTGAAATTGCA+AGG + chr8_1:64735167-64735186 None:intergenic 45.0%
! TGCAATTTCAGGTGGGGAAT+TGG - chr8_1:64735167-64735186 Msa1207310:intron 45.0%
TTACCCTTTGCAATTGAGGG+GGG + chr8_1:64735220-64735239 None:intergenic 45.0%
GGCATTCCCTCGTACATTAT+GGG + chr8_1:64735257-64735276 None:intergenic 45.0%
TGGCATTCCCTCGTACATTA+TGG + chr8_1:64735258-64735277 None:intergenic 45.0%
CGCATACCAACGTGATAACA+TGG + chr8_1:64735383-64735402 None:intergenic 45.0%
CTGCCCGTCTTTCCTATAAA+AGG + chr8_1:64735429-64735448 None:intergenic 45.0%
! CTTTTATAGGAAAGACGGGC+AGG - chr8_1:64735427-64735446 Msa1207310:intron 45.0%
GTTCATCAAGCTCATCACGT+AGG + chr8_1:64735481-64735500 None:intergenic 45.0%
AGCTTGATGAACGTGAAAGG+AGG - chr8_1:64735489-64735508 Msa1207310:intron 45.0%
TCCATGCTTTGACAGATGAC+AGG - chr8_1:64735672-64735691 Msa1207310:intron 45.0%
CCATGCTTTGACAGATGACA+GGG - chr8_1:64735673-64735692 Msa1207310:intron 45.0%
TTGACAGATGACAGGGATCA+TGG - chr8_1:64735680-64735699 Msa1207310:intron 45.0%
AGATGACAGGGATCATGGAA+GGG - chr8_1:64735685-64735704 Msa1207310:intron 45.0%
!!! GGCGGCCATCTATTTTTAGA+AGG - chr8_1:64735707-64735726 Msa1207310:intron 45.0%
TCTATTGGCCAGTTTCCCAT+AGG - chr8_1:64736119-64736138 Msa1207310:intron 45.0%
CCAAATGACCTATGGGAAAC+TGG + chr8_1:64736130-64736149 None:intergenic 45.0%
CCAGTTTCCCATAGGTCATT+TGG - chr8_1:64736127-64736146 Msa1207310:intron 45.0%
CCTGCAACCAAATGACCTAT+GGG + chr8_1:64736137-64736156 None:intergenic 45.0%
TCCTGCAACCAAATGACCTA+TGG + chr8_1:64736138-64736157 None:intergenic 45.0%
! TTTTGTGAGCCTAGCATCTC+TGG - chr8_1:64736262-64736281 Msa1207310:intron 45.0%
ACCTCTCTTAGGATAGAAGG+AGG - chr8_1:64736580-64736599 Msa1207310:intron 45.0%
TCCTCCTTCTATCCTAAGAG+AGG + chr8_1:64736584-64736603 None:intergenic 45.0%
GCAGGAACAACAACAACAAG+AGG - chr8_1:64736957-64736976 Msa1207310:intron 45.0%
GTAGTGCAATGGTCAAATGG+CGG + chr8_1:64737326-64737345 None:intergenic 45.0%
CTCGAACAGTAGTGCACAAT+TGG - chr8_1:64737437-64737456 Msa1207310:intron 45.0%
! GTATAGGTGGGATGATGATG+TGG - chr8_1:64737584-64737603 Msa1207310:intron 45.0%
GTGTTCAAAAATCAAGCCCG+TGG - chr8_1:64737606-64737625 Msa1207310:intron 45.0%
TTGGGTACTTAGCAGGTTAG+AGG - chr8_1:64737946-64737965 Msa1207310:five_prime_UTR 45.0%
TGTTCGTTTCCACCTTTGGC+CGG + chr8_1:64734383-64734402 None:intergenic 50.0%
GCCAAAGGTGGAAACGAACA+AGG - chr8_1:64734383-64734402 Msa1207310:three_prime_UTR 50.0%
! GCCTTGTTCGTTTCCACCTT+TGG + chr8_1:64734387-64734406 None:intergenic 50.0%
CACCACTCTCAAACCTAGGT+AGG - chr8_1:64734463-64734482 Msa1207310:three_prime_UTR 50.0%
TTGGGGGGAAAAACCTACCT+AGG + chr8_1:64734479-64734498 None:intergenic 50.0%
CTCCCTGAAATTGTTGGGGT+CGG - chr8_1:64734896-64734915 Msa1207310:intron 50.0%
TCCCTGAAATTGTTGGGGTC+GGG - chr8_1:64734897-64734916 Msa1207310:intron 50.0%
! GACCCTTGCAATTTCAGGTG+GGG - chr8_1:64735161-64735180 Msa1207310:intron 50.0%
GAGAGCGGAGGGTTAGAAAA+GGG + chr8_1:64735312-64735331 None:intergenic 50.0%
AGAGAGCGGAGGGTTAGAAA+AGG + chr8_1:64735313-64735332 None:intergenic 50.0%
CCCTGTCATCTGTCAAAGCA+TGG + chr8_1:64735676-64735695 None:intergenic 50.0%
CAGATGACAGGGATCATGGA+AGG - chr8_1:64735684-64735703 Msa1207310:intron 50.0%
GATGACAGGGATCATGGAAG+GGG - chr8_1:64735686-64735705 Msa1207310:intron 50.0%
TCATCTGCATCAACACTGCG+TGG + chr8_1:64735908-64735927 None:intergenic 50.0%
CCCATAGGTCATTTGGTTGC+AGG - chr8_1:64736134-64736153 Msa1207310:intron 50.0%
GGATGACACTGAAGCTTTGC+TGG - chr8_1:64736430-64736449 Msa1207310:intron 50.0%
GTGGTCGTAACACCTCTCTT+AGG - chr8_1:64736569-64736588 Msa1207310:CDS 50.0%
TTGCGAGCTTGGTTTCTCCA+CGG + chr8_1:64737626-64737645 None:intergenic 50.0%
GATGAATCGCTTTGCGAGCT+TGG + chr8_1:64737637-64737656 None:intergenic 50.0%
CTTCAGGCTCCAAACAACTC+AGG + chr8_1:64737733-64737752 None:intergenic 50.0%
CGCACACCACTCTCAAACCT+AGG - chr8_1:64734459-64734478 Msa1207310:three_prime_UTR 55.0%
GCCCGACCCCAACAATTTCA+GGG + chr8_1:64734901-64734920 None:intergenic 55.0%
TGCCCGACCCCAACAATTTC+AGG + chr8_1:64734902-64734921 None:intergenic 55.0%
TTTGCAATTGAGGGGGGTGG+GGG + chr8_1:64735214-64735233 None:intergenic 55.0%
CTTTGCAATTGAGGGGGGTG+GGG + chr8_1:64735215-64735234 None:intergenic 55.0%
CCTTTGCAATTGAGGGGGGT+GGG + chr8_1:64735216-64735235 None:intergenic 55.0%
CCACCCCCCTCAATTGCAAA+GGG - chr8_1:64735214-64735233 Msa1207310:intron 55.0%
GAAAGACGGGCAGGATACAC+AGG - chr8_1:64735436-64735455 Msa1207310:intron 55.0%
! CAGTGATGACGACGACGATG+AGG - chr8_1:64736409-64736428 Msa1207310:intron 55.0%
AAGGAGGCAGAGCTTATGCG+TGG - chr8_1:64736994-64737013 Msa1207310:intron 55.0%
TGCGAGCTTGGTTTCTCCAC+GGG + chr8_1:64737625-64737644 None:intergenic 55.0%
GACCGCCGCTAGACCAACAT+GGG - chr8_1:64734355-64734374 Msa1207310:three_prime_UTR 60.0%
! TGCCCATGTTGGTCTAGCGG+CGG + chr8_1:64734360-64734379 None:intergenic 60.0%
! CGGTGCCCATGTTGGTCTAG+CGG + chr8_1:64734363-64734382 None:intergenic 60.0%
CGCTAGACCAACATGGGCAC+CGG - chr8_1:64734361-64734380 Msa1207310:three_prime_UTR 60.0%
CCCACCCCCCTCAATTGCAA+AGG - chr8_1:64735213-64735232 Msa1207310:intron 60.0%
CCCTTTGCAATTGAGGGGGG+TGG + chr8_1:64735217-64735236 None:intergenic 60.0%
GACAGGGATCATGGAAGGGG+CGG - chr8_1:64735689-64735708 Msa1207310:intron 60.0%
GGCACAGGAAAAGCTGCGCA+AGG - chr8_1:64736481-64736500 Msa1207310:intron 60.0%
GGTCTAGCGGCGGTCGTCAT+CGG + chr8_1:64734350-64734369 None:intergenic 65.0%
CGACCGCCGCTAGACCAACA+TGG - chr8_1:64734354-64734373 Msa1207310:three_prime_UTR 65.0%
CCTTTGGCCGGTGCCCATGT+TGG + chr8_1:64734371-64734390 None:intergenic 65.0%
!! CCAACATGGGCACCGGCCAA+AGG - chr8_1:64734368-64734387 Msa1207310:three_prime_UTR 65.0%
!! ACATGGGCACCGGCCAAAGG+TGG - chr8_1:64734371-64734390 Msa1207310:three_prime_UTR 65.0%
CGGCGGTCGTCATCGGATCG+AGG + chr8_1:64734343-64734362 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 64734272 64738007 64734272 ID=Msa1207310;Name=Msa1207310
chr8_1 mRNA 64734272 64738007 64734272 ID=Msa1207310-mRNA-1;Parent=Msa1207310;Name=Msa1207310-mRNA-1;_AED=0.11;_eAED=0.11;_QI=78|1|1|1|1|1|7|294|227
chr8_1 exon 64734272 64734689 64734272 ID=Msa1207310-mRNA-1:exon:21242;Parent=Msa1207310-mRNA-1
chr8_1 exon 64735218 64735318 64735218 ID=Msa1207310-mRNA-1:exon:21241;Parent=Msa1207310-mRNA-1
chr8_1 exon 64735777 64735867 64735777 ID=Msa1207310-mRNA-1:exon:21240;Parent=Msa1207310-mRNA-1
chr8_1 exon 64736319 64736406 64736319 ID=Msa1207310-mRNA-1:exon:21239;Parent=Msa1207310-mRNA-1
chr8_1 exon 64736551 64736592 64736551 ID=Msa1207310-mRNA-1:exon:21238;Parent=Msa1207310-mRNA-1
chr8_1 exon 64736737 64736843 64736737 ID=Msa1207310-mRNA-1:exon:21237;Parent=Msa1207310-mRNA-1
chr8_1 exon 64737799 64738007 64737799 ID=Msa1207310-mRNA-1:exon:21236;Parent=Msa1207310-mRNA-1
chr8_1 five_prime_UTR 64737930 64738007 64737930 ID=Msa1207310-mRNA-1:five_prime_utr;Parent=Msa1207310-mRNA-1
chr8_1 CDS 64737799 64737929 64737799 ID=Msa1207310-mRNA-1:cds;Parent=Msa1207310-mRNA-1
chr8_1 CDS 64736737 64736843 64736737 ID=Msa1207310-mRNA-1:cds;Parent=Msa1207310-mRNA-1
chr8_1 CDS 64736551 64736592 64736551 ID=Msa1207310-mRNA-1:cds;Parent=Msa1207310-mRNA-1
chr8_1 CDS 64736319 64736406 64736319 ID=Msa1207310-mRNA-1:cds;Parent=Msa1207310-mRNA-1
chr8_1 CDS 64735777 64735867 64735777 ID=Msa1207310-mRNA-1:cds;Parent=Msa1207310-mRNA-1
chr8_1 CDS 64735218 64735318 64735218 ID=Msa1207310-mRNA-1:cds;Parent=Msa1207310-mRNA-1
chr8_1 CDS 64734566 64734689 64734566 ID=Msa1207310-mRNA-1:cds;Parent=Msa1207310-mRNA-1
chr8_1 three_prime_UTR 64734272 64734565 64734272 ID=Msa1207310-mRNA-1:three_prime_utr;Parent=Msa1207310-mRNA-1
Gene Sequence

>Msa1207310

ATGACGACCGCCGCTAGACCAACATGGGCACCGGCCAAAGGTGGAAACGAACAAGGCGGTACTCGAATTTTCGGTCCTTCCCAAAAATACTCTTCAAGAGATATCGCATCGCACACCACTCTCAAACCTAGGAAAGACGGGCAGGATACACAGGATGAGTTAAAGAGAAGGAACCTACGTGATGAGCTTGATGAACGTGAAAGGAGGCACTTCTCATCAAAAAATAAATCGTATAATGATGACAGGGATCATGGAAGGGGCGGCCATCTATTTTTAGAAGGAACAAAAAGAGACATTGAAGACAACATCATTCCACGCAGTGTTGATGCAGATGATTCTGACGTTGAAGTCAACAGTGATGATGAAAGTGATGACGACGACGATGAGGATGACACTGAAGCTTTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGGGCACAGGAAAAGCTGCGCAAGGAACAACAACAACAAGAGGAAGATCTTAAAGTAAAGGAGGCAGAGCTTATGCGTGGAAACCCTTTGATCAATAACCCGACATCTTTCAGTGTCAAAAGAAGGTGGGATGATGATGTGGTGTTCAAAAATCAAGCCCGTGGAGAAACCAAGCTCGCAAAGCGATTCATCAATGACACCATCAGGAATGATTTCCATAGGAAATTCCTGCACAAATACATGAAGTAA

Protein sequence

>Msa1207310

MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRKDGQDTQDELKRRNLRDELDERERRHFSSKNKSYNDDRDHGRGGHLFLEGTKRDIEDNIIPRSVDADDSDVEVNSDDESDDDDDEDDTEALLAELEQIKKERAQEKLRKEQQQQEEDLKVKEAELMRGNPLINNPTSFSVKRRWDDDVVFKNQARGETKLAKRFINDTIRNDFHRKFLHKYMK*